Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 45 of 322
Found at i:13498308 original size:40 final size:40
Alignment explanation
Indices: 13498253--13498558 Score: 459
Period size: 40 Copynumber: 7.7 Consensus size: 40
13498243 GAGAATTGAG
13498253 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* *
13498293 AGTGATATATCCGGGCTAAGTCCCAAGGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
13498333 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
13498373 AGTGGTATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
*
13498413 AGTGATATATCTGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * * *
13498453 AGTGATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* ** * * *
13498493 AGTGATATATCCGTGCTAAACCCCAAAGAGCGTTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
13498533 GGTGTTATATCCGGGCTAGGTCCCGA
1 AGTGATATATCCGGGCTAAGTCCCGA
13498559 AGAGTAATCA
Statistics
Matches: 239, Mismatches: 27, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 239 1.00
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:13502030 original size:47 final size:47
Alignment explanation
Indices: 13501976--13502179 Score: 320
Period size: 47 Copynumber: 4.3 Consensus size: 47
13501966 TATATTTGAG
* *
13501976 TGAATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCTGATATGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGA
* *
13502023 TGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCC-AAAGTGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATA-TGA
*
13502070 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATATGA
*
13502119 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGA
1 TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGA
13502166 TGAATGTGAAAGTG
1 TGAATGTGAAAGTG
13502180 GCCGATATGA
Statistics
Matches: 144, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
46 2 0.01
47 99 0.69
49 42 0.29
50 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (47 bp):
TGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATATGA
Found at i:13502107 original size:96 final size:95
Alignment explanation
Indices: 13501976--13502179 Score: 331
Period size: 96 Copynumber: 2.1 Consensus size: 95
13501966 TATATTTGAG
*
13501976 TGAATGTGAAAGT-TTATATATGTGATAAGGCCTAATGGCTGATATGATGAATGTGAAAGTGTAT
1 TGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTAT
*
13502040 ATATGTGATAAGGCCGAATGGCC-AAAGTGA
66 ATATGTGATAAGGCCGAATAGCCGAAA-TGA
*
13502070 TGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTA
1 TGAATGTGAAAGTGT-TATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTA
* *
13502135 TATATGTGATAAGGCCTAATAGCCGATATGA
65 TATATGTGATAAGGCCGAATAGCCGAAATGA
13502166 TGAATGTGAAAGTG
1 TGAATGTGAAAGTG
13502180 GCCGATATGA
Statistics
Matches: 102, Mismatches: 5, Indels: 4
0.92 0.05 0.04
Matches are distributed among these distances:
94 13 0.13
95 1 0.01
96 86 0.84
97 2 0.02
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.30
Consensus pattern (95 bp):
TGAATGTGAAAGTGTTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAAAGTGTAT
ATATGTGATAAGGCCGAATAGCCGAAATGA
Found at i:13502182 original size:71 final size:71
Alignment explanation
Indices: 13502107--13502250 Score: 234
Period size: 71 Copynumber: 2.0 Consensus size: 71
13502097 TAAGGCCTAA
* * *
13502107 TGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATATGATGAATG
1 TGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATATGATGAATG
13502172 TGAAAG
66 TGAAAG
* * *
13502178 TGGCCGATATGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATATGATGAATG
13502243 TGAAAG
66 TGAAAG
13502249 TG
1 TG
13502251 TATATATATG
Statistics
Matches: 67, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
71 67 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (71 bp):
TGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATAGCCAATATGATGAATG
TGAAAG
Found at i:13502183 original size:24 final size:24
Alignment explanation
Indices: 13502156--13502203 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
13502146 AGGCCTAATA
13502156 GCCGATATGATGAATGTGAAAGTG
1 GCCGATATGATGAATGTGAAAGTG
13502180 GCCGATATGATGAATGTGAAAGTG
1 GCCGATATGATGAATGTGAAAGTG
13502204 TGTATATGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.08, G:0.33, T:0.25
Consensus pattern (24 bp):
GCCGATATGATGAATGTGAAAGTG
Found at i:13502229 original size:47 final size:47
Alignment explanation
Indices: 13502178--13502361 Score: 224
Period size: 47 Copynumber: 3.9 Consensus size: 47
13502168 AATGTGAAAG
* * *
13502178 TGGCCGATATGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAA
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
*
13502225 TGGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAA
1 TGGCCAATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCGAA
* * * * * *
13502274 TGGCCGATGTGATGAATGTGAAAGTGTTTATATGTGACAGGGCTGAG
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
* * * *
13502321 TGGCCAACGTGATGGATGTGAAAGTGTATAAATGTCATAAG
1 TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAG
13502362 TCCCGAAGGG
Statistics
Matches: 116, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
47 72 0.62
49 44 0.38
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
TGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAA
Found at i:13502260 original size:96 final size:95
Alignment explanation
Indices: 13502178--13502350 Score: 256
Period size: 96 Copynumber: 1.8 Consensus size: 95
13502168 AATGTGAAAG
* *
13502178 TGGCCGATATGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGGCCGATATGATGAATGTGAAAGTGTGTATATGTGACAAGGCCGAATGGCCAACGTGATGAATG
*
13502243 TGAAAGTGTATATATATGTGATAAGGCCTAA
66 TGAAAGTGTATATATATGTGATAAGG-CAAA
* * * * * *
13502274 TGGCCGATGTGATGAATGTGAAAGTGTTTATATGTGACAGGGCTGAGTGGCCAACGTGATGGATG
1 TGGCCGATATGATGAATGTGAAAGTGTGTATATGTGACAAGGCCGAATGGCCAACGTGATGAATG
13502339 TGAAAGTGTATA
66 TGAAAGTGTATA
13502351 AATGTCATAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
96 69 1.00
ACGTcount: A:0.31, C:0.09, G:0.32, T:0.29
Consensus pattern (95 bp):
TGGCCGATATGATGAATGTGAAAGTGTGTATATGTGACAAGGCCGAATGGCCAACGTGATGAATG
TGAAAGTGTATATATATGTGATAAGGCAAA
Found at i:13502342 original size:167 final size:167
Alignment explanation
Indices: 13502011--13502346 Score: 548
Period size: 167 Copynumber: 2.0 Consensus size: 167
13502001 TAAGGCCTAA
*
13502011 TGGCTGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAAGTGATGAATG
1 TGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAAGTGATGAATG
13502076 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
66 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
* *
13502141 TGATAAGGCCTAATAGCCGATATGATGAATGTGAAAG
131 TGATAAGGCCTAATAGCCAACATGATGAATGTGAAAG
* *
13502178 TGGCCGATATGATGAATGTGAAAGTGTGTATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
1 TGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAAGTGATGAATG
*
13502243 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTTTATATG
66 TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
* * * * * *
13502308 TGA-CAGGGCTGAGTGGCCAACGTGATGGATGTGAAAG
131 TGATAAGGCCT-AATAGCCAACATGATGAATGTGAAAG
13502345 TG
1 TG
13502347 TATAAATGTC
Statistics
Matches: 156, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
166 5 0.03
167 151 0.97
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.29
Consensus pattern (167 bp):
TGGCCGATATGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAAAGTGATGAATG
TGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
TGATAAGGCCTAATAGCCAACATGATGAATGTGAAAG
Found at i:13506306 original size:52 final size:51
Alignment explanation
Indices: 13506192--13506369 Score: 238
Period size: 51 Copynumber: 3.5 Consensus size: 51
13506182 ACTAGTGACT
* *
13506192 CAAGTGTAGTACTATGTCG-AGGCCACTTTGAGAAG-AGATAGC-TTGGTCA
1 CAAGTGTGGTACTATGT-GAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
*
13506241 CAAGTGTGGTACTATGTGAAGGCCGCTTTGTGAAGAAAGATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGATAGCTTTGGTCA
* *
13506293 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTT-GACTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTC-A
* *
13506344 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
13506370 CGGGTATCCG
Statistics
Matches: 116, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
48 1 0.01
49 30 0.26
50 2 0.02
51 42 0.36
52 41 0.35
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.27
Consensus pattern (51 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAGATAGCTTTGGTCA
Found at i:13509763 original size:23 final size:23
Alignment explanation
Indices: 13509737--13509785 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
13509727 AGCATTCATT
*
13509737 TCACAGTCATCATAGCATCATAA
1 TCACAATCATCATAGCATCATAA
13509760 TCACAATCATCATAGCATCATAA
1 TCACAATCATCATAGCATCATAA
13509783 TCA
1 TCA
13509786 TACATCCATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.41, C:0.27, G:0.06, T:0.27
Consensus pattern (23 bp):
TCACAATCATCATAGCATCATAA
Found at i:13520829 original size:34 final size:34
Alignment explanation
Indices: 13520791--13520982 Score: 141
Period size: 34 Copynumber: 5.4 Consensus size: 34
13520781 CTCAGGCCCA
*
13520791 AACTGATACTGATATTGTAATAGGCTAAGACCCT
1 AACTGAAACTGATATTGTAATAGGCTAAGACCCT
* * * * * * *
13520825 AACTGAAATTGAACCATTACTGAAATGGGCTCAGTCCCA
1 AACTGAAACTG----A-TATTGTAATAGGCTAAGACCCT
*
13520864 AACTGATACTGATATTGTAATAGGCTAAGACCCT
1 AACTGAAACTGATATTGTAATAGGCTAAGACCCT
* * * * * * *
13520898 AACTGAAATTGAACCATTACTGAAATGGGCTCAGTCCCA
1 AACTGAAACTG----A-TATTGTAATAGGCTAAGACCCT
*
13520937 AACTGATACTGATATTGTAATAGGCTAAGACCCT
1 AACTGAAACTGATATTGTAATAGGCTAAGACCCT
13520971 AACTGAAACTGA
1 AACTGAAACTGA
13520983 ACCATTACTG
Statistics
Matches: 115, Mismatches: 33, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
34 61 0.53
35 2 0.02
38 2 0.02
39 50 0.43
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (34 bp):
AACTGAAACTGATATTGTAATAGGCTAAGACCCT
Found at i:13520887 original size:73 final size:73
Alignment explanation
Indices: 13520768--13521001 Score: 441
Period size: 73 Copynumber: 3.2 Consensus size: 73
13520758 ACCGTTACTG
* *
13520768 TTACTGAGATGGGCTCAGGCCCAAACTGATACTGATATTGTAATAGGCTAAGACCCTAACTGAAA
1 TTACTGAAATGGGCTCAGTCCCAAACTGATACTGATATTGTAATAGGCTAAGACCCTAACTGAAA
13520833 TTGAACCA
66 TTGAACCA
13520841 TTACTGAAATGGGCTCAGTCCCAAACTGATACTGATATTGTAATAGGCTAAGACCCTAACTGAAA
1 TTACTGAAATGGGCTCAGTCCCAAACTGATACTGATATTGTAATAGGCTAAGACCCTAACTGAAA
13520906 TTGAACCA
66 TTGAACCA
13520914 TTACTGAAATGGGCTCAGTCCCAAACTGATACTGATATTGTAATAGGCTAAGACCCTAACTGAAA
1 TTACTGAAATGGGCTCAGTCCCAAACTGATACTGATATTGTAATAGGCTAAGACCCTAACTGAAA
*
13520979 CTGAACCA
66 TTGAACCA
13520987 TTACTGAAATGGGCT
1 TTACTGAAATGGGCT
13521002 TAGGCCTAGA
Statistics
Matches: 158, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 158 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (73 bp):
TTACTGAAATGGGCTCAGTCCCAAACTGATACTGATATTGTAATAGGCTAAGACCCTAACTGAAA
TTGAACCA
Found at i:13522044 original size:43 final size:42
Alignment explanation
Indices: 13521997--13522095 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 42
13521987 TCCCAAACGT
*
13521997 GGTCTTACATGTAATCAAATATCAATGCC-ACTATCCCAGATAG
1 GGTCTTACATGTAATCAAATA-CAATGCCGA-TATCCCAGACAG
* * * *
13522040 GGTCTTACACGAAATCAAATACAATGCCGATGTCCCAGACAT
1 GGTCTTACATGTAATCAAATACAATGCCGATATCCCAGACAG
13522082 GGTCTTACATGTAA
1 GGTCTTACATGTAA
13522096 ATCATAAGTC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 28 0.58
43 20 0.42
ACGTcount: A:0.34, C:0.23, G:0.16, T:0.26
Consensus pattern (42 bp):
GGTCTTACATGTAATCAAATACAATGCCGATATCCCAGACAG
Found at i:13522098 original size:43 final size:42
Alignment explanation
Indices: 13521986--13522134 Score: 142
Period size: 43 Copynumber: 3.5 Consensus size: 42
13521976 CGATGCCAAC
*
13521986 GTCCCAAACGTGGTCTTACATGT-AATCAAATATCAATGCCACT
1 GTCCCAAACATGGTCTTACATGTAAATCAAATA-CAATGCCA-T
* * * * *
13522029 ATCCCAGATAGGGTCTTACACG-AAATCAAATACAATGCCGAT
1 GTCCCAAACATGGTCTTACATGTAAATCAAATACAATGCC-AT
* * *
13522071 GTCCCAGACATGGTCTTACATGTAAATCATAAGT-CGATGCCAAC
1 GTCCCAAACATGGTCTTACATGTAAATCA-AA-TACAATGCC-AT
13522115 GTCCCAAACATGGTCTTACA
1 GTCCCAAACATGGTCTTACA
13522135 CGAAAACACA
Statistics
Matches: 87, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
42 26 0.30
43 32 0.37
44 28 0.32
45 1 0.01
ACGTcount: A:0.34, C:0.26, G:0.16, T:0.25
Consensus pattern (42 bp):
GTCCCAAACATGGTCTTACATGTAAATCAAATACAATGCCAT
Found at i:13525586 original size:27 final size:27
Alignment explanation
Indices: 13525552--13525689 Score: 154
Period size: 27 Copynumber: 5.1 Consensus size: 27
13525542 TGGATAAGTT
*
13525552 GTAGAATTATCGAAATAGCCCTGTAAG
1 GTAGAATTATCGAAATACCCCTGTAAG
* *
13525579 GTAGAATTATCGAAATACCCCTATAGG
1 GTAGAATTATCGAAATACCCCTGTAAG
* *
13525606 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAAG
* *
13525633 GTAGAATTACCGAGATA-CCCTGT-AG
1 GTAGAATTATCGAAATACCCCTGTAAG
* * **
13525658 GATAGAATTACCGAAATATCGTTGTAAG
1 G-TAGAATTATCGAAATACCCCTGTAAG
13525686 GTAG
1 GTAG
13525690 GACAACCGAT
Statistics
Matches: 96, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
25 2 0.02
26 21 0.22
27 70 0.73
28 3 0.03
ACGTcount: A:0.36, C:0.15, G:0.22, T:0.27
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAAG
Found at i:13525663 original size:26 final size:27
Alignment explanation
Indices: 13525552--13525675 Score: 169
Period size: 27 Copynumber: 4.6 Consensus size: 27
13525542 TGGATAAGTT
* *
13525552 GTAGAATTATCGAAATAGCCCTGTAAG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
13525579 GTAGAATTATCGAAATACCCCTATAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
13525606 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* *
13525633 GTAGAATTACCGAGATA-CCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* *
13525659 ATAGAATTACCGAAATA
1 GTAGAATTATCGAAATA
13525676 TCGTTGTAAG
Statistics
Matches: 87, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
26 24 0.28
27 63 0.72
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:13526385 original size:27 final size:26
Alignment explanation
Indices: 13526345--13526396 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
13526335 CTCACTACAA
*
13526345 TCTGGTGGCCTCGTCACATATATCTGT
1 TCTGGTGACCTCGTCACA-ATATCTGT
*
13526372 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGTCACAATATCTG
13526397 GCAGCCTCGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.30
27 16 0.70
ACGTcount: A:0.17, C:0.25, G:0.21, T:0.37
Consensus pattern (26 bp):
TCTGGTGACCTCGTCACAATATCTGT
Found at i:13535888 original size:68 final size:68
Alignment explanation
Indices: 13535739--13535896 Score: 153
Period size: 68 Copynumber: 2.3 Consensus size: 68
13535729 CTAGCCGATT
* * * *
13535739 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACTCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
*
13535804 TTTA
65 TATA
* * *
13535808 TCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
13535870 CTATATA
63 C-ATATA
13535877 GTATCTCGTAGC-CTTCTTGT
1 -TATCTCGTAGCTC-TCTTGT
13535897 ACACATGATG
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 8 0.11
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAT
ATA
Found at i:13543189 original size:68 final size:68
Alignment explanation
Indices: 13543040--13543197 Score: 153
Period size: 68 Copynumber: 2.3 Consensus size: 68
13543030 CTAGCCGATT
* * * *
13543040 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACGCATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
*
13543105 TTTA
65 TATA
* * *
13543109 TCTCTCACGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
13543171 CTATATA
63 C-ATATA
13543178 GTATCTCGTAGC-CTTCTTGT
1 -TATCTCGTAGCTC-TCTTGT
13543198 ACACATGATG
Statistics
Matches: 74, Mismatches: 9, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
67 1 0.01
68 33 0.45
69 8 0.11
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAT
ATA
Found at i:13556080 original size:12 final size:12
Alignment explanation
Indices: 13556063--13556088 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13556053 CATTCGGAAG
13556063 TATATATATACA
1 TATATATATACA
13556075 TATATATATACA
1 TATATATATACA
13556087 TA
1 TA
13556089 AGTATGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.08, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATATATACA
Found at i:13556602 original size:28 final size:28
Alignment explanation
Indices: 13556536--13556663 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
13556526 CATGAGATTG
* * **
13556536 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
13556565 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
13556593 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
13556622 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
13556650 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
13556664 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:13556625 original size:57 final size:57
Alignment explanation
Indices: 13556536--13556663 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
13556526 CATGAGATTG
*
13556536 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
13556593 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
13556650 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
13556664 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:13564752 original size:27 final size:28
Alignment explanation
Indices: 13564668--13564765 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
13564658 CATGAGATTG
* * * *
13564668 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
13564697 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
13564725 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
13564752 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
13564766 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:13564776 original size:27 final size:27
Alignment explanation
Indices: 13564696--13564778 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
13564686 TAAATTGTAC
* *
13564696 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
13564724 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
13564751 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
13564778 A
1 A
13564779 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:13564779 original size:29 final size:27
Alignment explanation
Indices: 13564668--13564779 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
13564658 CATGAGATTG
** * *
13564668 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
13564697 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
13564725 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
13564752 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
13564780 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:13569500 original size:40 final size:40
Alignment explanation
Indices: 13569423--13569680 Score: 351
Period size: 40 Copynumber: 6.5 Consensus size: 40
13569413 AAACCAAGTA
* *
13569423 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
13569462 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
13569502 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
13569542 CCTTCGGGACTTAGACCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
13569582 CCTTCCGGTCTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * * * *
13569622 CCTTCGGGGCTTATTCC-GAAATTAGTCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
13569662 CCTTCAGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
13569681 TTATCATCCG
Statistics
Matches: 195, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
39 17 0.09
40 177 0.91
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:13576172 original size:27 final size:27
Alignment explanation
Indices: 13576141--13576194 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
13576131 ATTACCAGTG
*
13576141 ATTGGCTAAGAAAATTTGGGAGATTAT
1 ATTGGCTAAGAAAAATTGGGAGATTAT
13576168 ATTGGCTAAGAAAAATTGGGAGATTAT
1 ATTGGCTAAGAAAAATTGGGAGATTAT
13576195 GTATAAGAGT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.39, C:0.04, G:0.26, T:0.31
Consensus pattern (27 bp):
ATTGGCTAAGAAAAATTGGGAGATTAT
Found at i:13577093 original size:67 final size:66
Alignment explanation
Indices: 13576951--13577125 Score: 179
Period size: 67 Copynumber: 2.6 Consensus size: 66
13576941 CAGGAGTTCG
* * * *
13576951 CTAGGACATTAAACATGGGGTACATTTGTAAGACCAAAGCTTAGCTATGGCAACATGTGGAGTCC
1 CTAGGACATTAAACATGGGGTACATTTGTAAGACCAAAGCTTAGCTATGGAAAAATATGGAATCC
13577016 T
66 T
* ** * * * ** *
13577017 CCAAAACATTAAACATTGGGTACATTATTTAAGATCGTATCTTAGCTATGGAAAAATATGGAATC
1 CTAGGACATTAAACATGGGGTACATT-TGTAAGACCAAAGCTTAGCTATGGAAAAATATGGAATC
*
13577082 TT
65 CT
* * *
13577084 CTAGGACATTACATATGGGGTACATTGTGTAAGACCATAGCT
1 CTAGGACATTAAACATGGGGTACATT-TGTAAGACCAAAGCT
13577126 CAGTTCGAGT
Statistics
Matches: 83, Mismatches: 25, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
66 22 0.27
67 61 0.73
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.29
Consensus pattern (66 bp):
CTAGGACATTAAACATGGGGTACATTTGTAAGACCAAAGCTTAGCTATGGAAAAATATGGAATCC
T
Found at i:13578804 original size:26 final size:26
Alignment explanation
Indices: 13578763--13578819 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13578753 TATGTAAATC
* *
13578763 AAATGAGCTATAATGTTGAGTATATG
1 AAATGAGCTATAATGTTGAGCATATA
* *
13578789 AAATGAGTTATGATGTTGAGCATATA
1 AAATGAGCTATAATGTTGAGCATATA
13578815 AAATG
1 AAATG
13578820 GATAGTATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.40, C:0.04, G:0.23, T:0.33
Consensus pattern (26 bp):
AAATGAGCTATAATGTTGAGCATATA
Found at i:13579150 original size:39 final size:39
Alignment explanation
Indices: 13579096--13579173 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
13579086 TACTTATGTA
*
13579096 ATTGTTTTGTCTATTTTGTAGATCATCGGAAGACTCATT
1 ATTGTTTTGTCTATTTTGTAGATCATCGGAAGAATCATT
13579135 ATTGTTTTGTCTATTTTGTAGATCATCGGAAGAATCATT
1 ATTGTTTTGTCTATTTTGTAGATCATCGGAAGAATCATT
13579174 CCGTTGGGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.46
Consensus pattern (39 bp):
ATTGTTTTGTCTATTTTGTAGATCATCGGAAGAATCATT
Found at i:13580177 original size:34 final size:34
Alignment explanation
Indices: 13580137--13580205 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
13580127 ATAAAAAGAG
13580137 AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
1 AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
13580171 AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
1 AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
13580205 A
1 A
13580206 CCGTAGCTGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.42, C:0.06, G:0.26, T:0.26
Consensus pattern (34 bp):
AAAAGAGTTTCTTGAATGAAAATAGGGTCGTAGA
Found at i:13586553 original size:28 final size:28
Alignment explanation
Indices: 13586513--13586604 Score: 121
Period size: 28 Copynumber: 3.3 Consensus size: 28
13586503 TGGGAAGTAG
* *
13586513 TTGGGTCTGATGGGCCATATGAATGTGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
* *
13586541 TTGGGCCTGATGGGCCATACGAATGGGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
* * *
13586569 TTGGGCCAGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGGCCATATGAATGAGA
13586597 TTGGGCCT
1 TTGGGCCT
13586605 AAAGGGGCCG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 55 1.00
ACGTcount: A:0.21, C:0.16, G:0.38, T:0.25
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATGAATGAGA
Found at i:13586951 original size:27 final size:27
Alignment explanation
Indices: 13586921--13587394 Score: 366
Period size: 27 Copynumber: 17.7 Consensus size: 27
13586911 TAATAAAGAG
* *
13586921 AAATTACTAAAATATCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
13586948 AAATTACCGAAATACCATCGA-TTGTG
1 AAATTACTGAAATACCCTCGATTTGTA
** *
13586974 AAATTACTGAAATACTGTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
13587001 AAATTACCT-AAATACCCTCGA-TTGTG
1 AAATTA-CTGAAATACCCTCGATTTGTA
* *
13587027 AAATT-TTGAAAATATCCTCGATTTGTA
1 AAATTACTG-AAATACCCTCGATTTGTA
** *
13587054 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACTGAAATACCCTC-GATTTGTA
* *
13587081 AAATTACCGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
13587108 AAGTTATTAAAATACCC-CTGATTTGTA
1 AAATTACTGAAATACCCTC-GATTTGTA
*
13587135 AAATTA-TCGAAATACCCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
**
13587161 AAATTACTGAAATA-CCTTTACTTTGTA
1 AAATTACTGAAATACCCTCGA-TTTGTA
*
13587188 AAATTA-TCGAAATACCCCCGATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* *
13587215 AAATTA-TCGAAACACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* * * *
13587242 AAATTACTAAAACACCCTCCATTTATA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
13587269 AAAGTA-TCGAAATACCCTCAATTAGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
13587296 AAATTA-TCGAAATACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
* ** *
13587323 AAATTATTGAAATACCCTAAACTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * *
13587350 AAATTA-TCAAAATACCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
13587377 AAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
13587395 TCTAGTGTAA
Statistics
Matches: 363, Mismatches: 62, Indels: 44
0.77 0.13 0.09
Matches are distributed among these distances:
24 1 0.00
25 4 0.01
26 63 0.17
27 286 0.79
28 9 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:13587104 original size:54 final size:54
Alignment explanation
Indices: 13586930--13587394 Score: 410
Period size: 54 Copynumber: 8.7 Consensus size: 54
13586920 GAAATTACTA
* * *
13586930 AAATATCCTCGATTTGTAAAATTACCGAAATACCATCGA-TTGTGAAATTA-CTG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-G
** * * * *
13586983 AAATACTGTTGATTTGTAAAATTACCTAAATACCCTCGA-TTGTGAAATT-TTG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
* * * *
13587035 AAAATATCCTCGATTTGTAAAATTACCAAAATACCC-CTGATTTGTGAAATTACCG
1 -AAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GATTTGTAAAATTATCG
* * ***
13587090 AAACACCCTCGATTTGTAAAGTTATTAAAATACCC-CTGATTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTC-GATTTGTAAAATTATCG
* * **
13587144 AAATACCCTCGA-TTGTGAAATTACTGAAATA-CCTTTACTTTGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGA-TTTGTAAAATTATCG
* * * * *
13587197 AAATACCCCCGATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTA-CTA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATC-G
* * * * * * *
13587251 AAACACCCTCCATTTATAAAAGTATCGAAATACCCTCAATTAGTAAAATTATCG
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
* ** ** * *
13587305 AAATACCCTCAATTTGTAAAATTATTGAAATACCCTAAACTTGTAAAATTATCA
1 AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
* *
13587359 AAATACCCTTG-TAGTGTAAAATTACCGAAATACCCT
1 AAATACCCTCGAT-TTGTAAAATTACCGAAATACCCT
13587395 TCTAGTGTAA
Statistics
Matches: 342, Mismatches: 58, Indels: 23
0.81 0.14 0.05
Matches are distributed among these distances:
52 5 0.01
53 118 0.35
54 213 0.62
55 6 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (54 bp):
AAATACCCTCGATTTGTAAAATTACCGAAATACCCTCGATTTGTAAAATTATCG
Found at i:13587149 original size:81 final size:81
Alignment explanation
Indices: 13586921--13587394 Score: 412
Period size: 81 Copynumber: 5.9 Consensus size: 81
13586911 TAATAAAGAG
* * * * * *
13586921 AAATTACTAAAATATCCTCGATTTGTAAAATTACCGAAATA-CCATCGA-TTGTGAAATTA-CTG
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCT-GATTTGTAAAATTATC-G
** *
13586983 AAATACTGTTGATTTGTA
64 AAATACCCTCGATTTGTA
* * * * * *
13587001 AAATTACCT-AAATACCCTCGA-TTGTGAAATTTTGAAAATA-TCCTCGATTTGTAAAATTACCA
1 AAATTA-CTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCT-GATTTGTAAAATTATCG
*
13587063 AAATACCC-CTGATTTGTG
64 AAATACCCTC-GATTTGTA
* * * *
13587081 AAATTACCGAAACACCCTCGATTTGTAAAGTTATTAAAATACCCCTGATTTGTAAAATTATCGAA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGAA
*
13587146 ATACCCTCGA-TTGTG
66 ATACCCTCGATTTGTA
** * *
13587161 AAATTACTGAAATA-CCTTTACTTTGTAAAATTATCGAAATACCCCCGATTTGTAAAATTATCGA
1 AAATTACTGAAATACCCTCGA-TTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGA
* *
13587225 AACACCCTCAATTTGTA
65 AATACCCTCGATTTGTA
* * * * * * * *
13587242 AAATTACTAAAACACCCTCCATTTATAAAAGTATCGAAATA-CCCTCAATTAGTAAAATTATCGA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCT-GATTTGTAAAATTATCGA
*
13587306 AATACCCTCAATTTGTA
65 AATACCCTCGATTTGTA
* ** * * * *
13587323 AAATTATTGAAATACCCTAAACTTGTAAAATTATCAAAATACCCTTG-TAGTGTAAAATTACCGA
1 AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCTGAT-TTGTAAAATTATCGA
13587387 AATACCCT
65 AATACCCT
13587395 TCTAGTGTAA
Statistics
Matches: 322, Mismatches: 58, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
79 24 0.07
80 126 0.39
81 161 0.50
82 11 0.03
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (81 bp):
AAATTACTGAAATACCCTCGATTTGTAAAATTATCAAAATACCCCTGATTTGTAAAATTATCGAA
ATACCCTCGATTTGTA
Found at i:13587160 original size:134 final size:132
Alignment explanation
Indices: 13586921--13587328 Score: 446
Period size: 134 Copynumber: 3.0 Consensus size: 132
13586911 TAATAAAGAG
* * * * *
13586921 AAATTACTAAAATA-TCCTCGATTTGTAAAATTACCGAAATACCATCGA-TTGTGAAATTACTGA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACCGAAACACCCTCGATTTGT-AAATTACTAA
*** * * *
13586984 AATACTGTTGATTTGTAAAATTACCTAAATACCCTCGATTGTGAAATT-TTGAAAATATCCTCGA
64 AATACCCCTGATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTATTG-AAATA-CCTCAA
13587048 TTTGTA
127 TTTGTA
* *
13587054 AAATTACCAAAATACCCCTGATTTGTGAAATTACCGAAACACCCTCGATTTGTAAAGTTATTAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAA-TTACTAAA
* * *
13587119 ATACCCCTGATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTACTGAAATACCTTTACTT
65 ATACCCCTGATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTATTGAAATACC-TCAATT
13587184 TGTA
129 TGTA
* * * * *
13587188 AAATTATCGAAATACCCCCGATTTGTAAAATTATCGAAACACCCTCAATTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAACACCCTCGATTTGT-AAATTACTAAA
* * * * * * *
13587253 ACA-CCCTCCATTTATAAAAGTATCGAAATACCCTCAATTAGTAAAATTATCGAAATACCCTCAA
65 ATACCCCT-GATTTGTAAAATTATCGAAATACCCTCGATT-GTGAAATTATTGAAATA-CCTCAA
13587317 TTTGTA
127 TTTGTA
13587323 AAATTA
1 AAATTA
13587329 TTGAAATACC
Statistics
Matches: 233, Mismatches: 33, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
133 48 0.21
134 150 0.64
135 33 0.14
136 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (132 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACCGAAACACCCTCGATTTGTAAATTACTAAAA
TACCCCTGATTTGTAAAATTATCGAAATACCCTCGATTGTGAAATTATTGAAATACCTCAATTTG
TA
Found at i:13587395 original size:27 final size:27
Alignment explanation
Indices: 13587346--13587407 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
13587336 ACCCTAAACT
* *
13587346 TGTAAAATTATCAAAATACCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTCTAG
*
13587373 TGTAAAATTACCGAAATACCCTTCTAG
1 TGTAAAATTACCAAAATACCCTTCTAG
13587400 TGTAAAAT
1 TGTAAAAT
13587408 GACTGCATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.32
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCTTCTAG
Found at i:13587669 original size:50 final size:50
Alignment explanation
Indices: 13587585--13587682 Score: 160
Period size: 50 Copynumber: 2.0 Consensus size: 50
13587575 ATTGGGTATT
* *
13587585 GTCATTCTGCATATACGTGTGATGACTGAGCATGACATTCACAACATATG
1 GTCATTCTGCATACACGTGTGATGACTGAACATGACATTCACAACATATG
* *
13587635 GTCATTCTGCATACACGTGTGATGATTGAACATGACATTCACGACATA
1 GTCATTCTGCATACACGTGTGATGACTGAACATGACATTCACAACATA
13587683 CTGCATGGGT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (50 bp):
GTCATTCTGCATACACGTGTGATGACTGAACATGACATTCACAACATATG
Found at i:13592360 original size:27 final size:27
Alignment explanation
Indices: 13592330--13592507 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
13592320 ATATTGAGCC
* * * *
13592330 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
13592357 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
13592384 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
13592412 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
13592439 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
13592466 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
13592493 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13592508 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:13592469 original size:82 final size:81
Alignment explanation
Indices: 13592351--13592506 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
13592341 TGCTATATAA
* *
13592351 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
13592416 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
13592433 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
13592497 CACTTAGTGC
65 CACTTAGTGC
13592507 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:13600309 original size:27 final size:27
Alignment explanation
Indices: 13600279--13600456 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
13600269 ATATTGAGTC
* * * *
13600279 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
13600306 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
13600333 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
13600361 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
13600388 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
13600415 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
13600442 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13600457 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:13600418 original size:82 final size:81
Alignment explanation
Indices: 13600300--13600455 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
13600290 TGCTATATAA
* *
13600300 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
13600365 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
13600382 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
13600446 CACTTAGTGC
65 CACTTAGTGC
13600456 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:13606270 original size:38 final size:38
Alignment explanation
Indices: 13606219--13606293 Score: 123
Period size: 38 Copynumber: 2.0 Consensus size: 38
13606209 AGTATGAAAT
13606219 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
1 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
** *
13606257 GAAATGTATGAGATGTGTTTAGCAGCAAAAGCACAAA
1 GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAA
13606294 CTTCAACAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.48, C:0.11, G:0.21, T:0.20
Consensus pattern (38 bp):
GAAATGTATGAGATAAGTTTAGCAGCAAAAACACAAAA
Found at i:13613793 original size:26 final size:27
Alignment explanation
Indices: 13613755--13613854 Score: 105
Period size: 27 Copynumber: 3.8 Consensus size: 27
13613745 TAATAATGCA
** *
13613755 GCATAGCTGCCAGAAACAGTAAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* * *
13613782 GCA-AGCCTCCAGTATCAGTAATTGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
*
13613808 GCATAGCCACCAGTAACAGTGAATGTG
1 GCATAGCCACCAGTAACAGTAAATGTG
* *
13613835 ACATAGTCACCAGT-ACAGTA
1 GCATAGCCACCAGTAACAGTA
13613855 CTTCATCCAT
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
26 26 0.43
27 34 0.57
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.21
Consensus pattern (27 bp):
GCATAGCCACCAGTAACAGTAAATGTG
Found at i:13614484 original size:27 final size:27
Alignment explanation
Indices: 13614020--13614489 Score: 407
Period size: 27 Copynumber: 17.6 Consensus size: 27
13614010 TATTACGATC
*
13614020 ATTTTACAAAAC-GAGGGTATTTCGGTA
1 ATTTTACAAATCAG-GGGTATTTCGGTA
* *
13614047 ATTTTATC-AATCGGGGGTATTTTGGTA
1 ATTTTA-CAAATCAGGGGTATTTCGGTA
* * *
13614074 ATTTCACAAGTCAGGGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* *
13614101 ATTTTAC-AACCTGGGAGTATTTCGGTA
1 ATTTTACAAATCAGGG-GTATTTCGGTA
* *
13614128 ATTTCACAAATCAGGGGTATTTCAGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* *
13614155 ATTTT-CAAA--AGAGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * *
13614179 ATTTCACAAATTAGTGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * **
13614206 AATTCACAAATTAGGGGTATTTTAGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
**
13614233 ATTTTACAAATCAGGGGTATTTCGACA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * *
13614260 ATTTCACAAGTCAGGGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * *
13614287 ATTTTACAACTTAGGAGTATTTCGGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * *
13614314 ATTTCATAAAGCAGGGGTATTTCAGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
** *
13614341 ATTTTACAAA--AAAGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * * *
13614366 GTTTCACAAATTAGTGGTATTTCTGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* * * *
13614393 ATTTCACAAATTAGAGGTATTTCGATA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* *
13614420 ATTTTACAAATCAGGGGCATTTTGGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
*
13614447 ATTTTACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAATCAGGGGTATTTCGGTA
* *
13614474 ATTTTATAAATTAGGG
1 ATTTTACAAATCAGGG
13614490 TCTTAACGAC
Statistics
Matches: 359, Mismatches: 74, Indels: 20
0.79 0.16 0.04
Matches are distributed among these distances:
24 16 0.04
25 23 0.06
26 10 0.03
27 302 0.84
28 8 0.02
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (27 bp):
ATTTTACAAATCAGGGGTATTTCGGTA
Found at i:13614487 original size:81 final size:81
Alignment explanation
Indices: 13614007--13614477 Score: 449
Period size: 81 Copynumber: 5.9 Consensus size: 81
13613997 TACCTTATAA
* * * * * *
13614007 GGGTATTACGATCATTTTACAAAAC-GAGGGTATTTCGGTAATTTTATC-AATCGGGGGTATTTT
1 GGGTATTTCGATAATTTTACAAATCAG-GGGTATTTCGATAATTTCA-CAAATCAGGGGTATTTT
*
13614070 GGTAATTTCACAAGTCAG
64 GGTAATTTCACAAATCAG
* * * **
13614088 GGGTATTTCGATAATTTTAC-AACCTGGGAGTATTTCGGTAATTTCACAAATCAGGGGTATTTCA
1 GGGTATTTCGATAATTTTACAAATCAGGG-GTATTTCGATAATTTCACAAATCAGGGGTATTTTG
*
13614152 GTAATTT-TCAAA--AG
65 GTAATTTCACAAATCAG
* * * * * * *
13614166 AGGTATTTCGATAATTTCACAAATTAGTGGTATTTCGATAAATTCACAAATTAGGGGTATTTTAG
1 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
*
13614231 TAATTTTACAAATCAG
66 TAATTTCACAAATCAG
* * * * * * * *
13614247 GGGTATTTCGACAATTTCACAAGTCAGGGGTATTTCGATAATTTTACAACTTAGGAGTATTTCGG
1 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
* *
13614312 TAATTTCATAAAGCAG
66 TAATTTCACAAATCAG
** * * *
13614328 GGGTATTTC-AGTAATTTTACAAA--AAAGGTATTTCGATAGTTTCACAAATTAGTGGTATTTCT
1 GGGTATTTCGA-TAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTT-T
*
13614390 -GTAATTTCACAAATTAG
64 GGTAATTTCACAAATCAG
* * * * *
13614407 AGGTATTTCGATAATTTTACAAATCAGGGGCATTTTGGTAATTTTACAAATCAGGGGTATTTTGG
1 GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
13614472 TAATTT
66 TAATTT
13614478 TATAAATTAG
Statistics
Matches: 319, Mismatches: 58, Indels: 26
0.79 0.14 0.06
Matches are distributed among these distances:
78 58 0.18
79 72 0.23
80 12 0.04
81 177 0.55
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACAAATCAGGGGTATTTCGATAATTTCACAAATCAGGGGTATTTTGG
TAATTTCACAAATCAG
Found at i:13614733 original size:19 final size:19
Alignment explanation
Indices: 13614701--13614738 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
13614691 CGTGTGGGCC
13614701 CACGAGCCCATTCGGCCCA
1 CACGAGCCCATTCGGCCCA
13614720 CACGA-CCCATTTCGGCCCA
1 CACGAGCCCA-TTCGGCCCA
13614739 TCGAGGCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.21, C:0.47, G:0.18, T:0.13
Consensus pattern (19 bp):
CACGAGCCCATTCGGCCCA
Found at i:13616885 original size:6 final size:6
Alignment explanation
Indices: 13616868--13616897 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
13616858 AAATGCTTTT
*
13616868 TCCTTC TTCTTC TCCTTC TCCTTC TCCTTC
1 TCCTTC TCCTTC TCCTTC TCCTTC TCCTTC
13616898 CTTTCATTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (6 bp):
TCCTTC
Found at i:13622881 original size:41 final size:40
Alignment explanation
Indices: 13622828--13622988 Score: 141
Period size: 41 Copynumber: 3.9 Consensus size: 40
13622818 CTTAGCACCA
13622828 GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACTACTG
1 GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGAC-ACTG
* * * *
13622869 GCTCGAAGGCCCTTCG-GAACTAAG-TCCGG-TTATGACACTA
1 GCTCAAAAGCCCTTCGAG-ACCAAGCT-CGGATTA-GACACTG
* * * *
13622909 GCTCTAAAAAGCCCTTCAAAACTAAGTTCGGTTATTAG-CACTG
1 GCTC--AAAAGCCCTTCGAGACCAAGCTCGG--ATTAGACACTG
13622952 GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTTAGAC
1 GCTCAAAAGCCCTTCGAGACCAAGCTCGGA-TTAGAC
13622989 CCCGATTAGC
Statistics
Matches: 95, Mismatches: 13, Indels: 24
0.72 0.10 0.18
Matches are distributed among these distances:
39 1 0.01
40 16 0.17
41 47 0.49
42 18 0.19
43 9 0.09
44 1 0.01
45 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.22
Consensus pattern (40 bp):
GCTCAAAAGCCCTTCGAGACCAAGCTCGGATTAGACACTG
Found at i:13625849 original size:11 final size:11
Alignment explanation
Indices: 13625833--13625876 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
13625823 AAGGCGTCAT
13625833 AGTGAAAAGTA
1 AGTGAAAAGTA
13625844 AGTGAAAACGTCA
1 AGTGAAAA-GT-A
13625857 TAGTGAAAAGTA
1 -AGTGAAAAGTA
*
13625869 AGTTAAAA
1 AGTGAAAA
13625877 CCTAAAACCC
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
11 15 0.52
12 3 0.10
13 3 0.10
14 8 0.28
ACGTcount: A:0.52, C:0.05, G:0.23, T:0.20
Consensus pattern (11 bp):
AGTGAAAAGTA
Found at i:13625857 original size:25 final size:25
Alignment explanation
Indices: 13625827--13625877 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
13625817 AGATAAAAGG
13625827 CGTCATAGTGAAAAGTAAGTGAAAA
1 CGTCATAGTGAAAAGTAAGTGAAAA
*
13625852 CGTCATAGTGAAAAGTAAGTTAAAA
1 CGTCATAGTGAAAAGTAAGTGAAAA
13625877 C
1 C
13625878 CTAAAACCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.47, C:0.10, G:0.22, T:0.22
Consensus pattern (25 bp):
CGTCATAGTGAAAAGTAAGTGAAAA
Found at i:13625863 original size:14 final size:14
Alignment explanation
Indices: 13625827--13625865 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 14
13625817 AGATAAAAGG
13625827 CGTCATAGTGAAAA
1 CGTCATAGTGAAAA
13625841 -GT-A-AGTGAAAA
1 CGTCATAGTGAAAA
13625852 CGTCATAGTGAAAA
1 CGTCATAGTGAAAA
13625866 GTAAGTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 8 0.36
12 3 0.14
13 3 0.14
14 8 0.36
ACGTcount: A:0.46, C:0.10, G:0.23, T:0.21
Consensus pattern (14 bp):
CGTCATAGTGAAAA
Found at i:13630529 original size:41 final size:41
Alignment explanation
Indices: 13630463--13630542 Score: 119
Period size: 41 Copynumber: 2.0 Consensus size: 41
13630453 TGCAGGGGTT
*
13630463 TTTACACGGCCTGGCACACGCCCGTGTCCCTGGCCCGTGTCC
1 TTTACACGGCCTGGCACACGCCCGTGT-CCTAGCCCGTGTCC
13630505 TTTACACGGCCAT-G-ACACGCCCGTGTCCTAGCCCGTGT
1 TTTACACGGCC-TGGCACACGCCCGTGTCCTAGCCCGTGT
13630543 GCACAAACCT
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
40 11 0.31
41 12 0.33
42 12 0.33
43 1 0.03
ACGTcount: A:0.12, C:0.40, G:0.25, T:0.23
Consensus pattern (41 bp):
TTTACACGGCCTGGCACACGCCCGTGTCCTAGCCCGTGTCC
Found at i:13632815 original size:46 final size:46
Alignment explanation
Indices: 13632711--13632929 Score: 173
Period size: 46 Copynumber: 4.7 Consensus size: 46
13632701 GGGTAAGGTT
* * * * *
13632711 CCGATGCCATGTCCTAGACATAGTCTTACACT-AGCTCATATATCAAG-
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGA-CTTATGTCTCGAGC
* *
13632758 TCGATGCCATGTCCCAGA-ATGGTCTTACATTGAC-TATGATCTCGTAG-
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTGACTTATG-TCTCG-AGC
*
13632805 CTGATGCATGTCCCAGACATGTCTTACACTGACTTATGTCTCGAGC
1 CCGATGCATGTCCCAGACATGTCTTACACTGACTTATGTCTCGAGC
* * *
13632851 CCGATGCATGTCCCAGACATGTCTTACACTAGCCCT-TGTCTCAATG-
1 CCGATGCATGTCCCAGACATGTCTTACACT-GACTTATGTCTCGA-GC
* *
13632897 CCAATGCAATGTCCCAAACATGGTCTTACACTG
1 CCGATGC-ATGTCCCAGACAT-GTCTTACACTG
13632930 GCTCTCATAA
Statistics
Matches: 145, Mismatches: 17, Indels: 20
0.80 0.09 0.11
Matches are distributed among these distances:
45 4 0.03
46 85 0.59
47 46 0.32
48 10 0.07
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTGACTTATGTCTCGAGC
Found at i:13632963 original size:140 final size:140
Alignment explanation
Indices: 13632711--13632974 Score: 318
Period size: 140 Copynumber: 1.9 Consensus size: 140
13632701 GGGTAAGGTT
* * * * * *
13632711 CCGATGCCATGTCCTAGACATAGTCTTACACTAGCTCATATATCAAGTCGATGCCATGTCCCAGA
1 CCGATGCCATGTCCCAGACATAGTCTTACACTAGCCCATATATCAAGCCAATGCAATGTCCCAAA
* * * * *
13632776 ATGGTCTTACATTGACTATGATCTCGTAGCTGATGCATGTCCCAGACATGTCTTACACTGACTTA
66 ATGGTCTTACACTGACTATCATATCGTAGCCGATGAATGTCCCAGACATGTCTTACACTGACTTA
13632841 TGTCTCGAGC
131 TGTCTCGAGC
* * *
13632851 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCCCTTGTCTCAATGCCAATGCAATGTCCCAA
1 CCGATGCCATGTCCCAGACATAGTCTTACACTAGCCCATATATCAA-GCCAATGCAATGTCCCAA
* * * *
13632914 ACATGGTCTTACACTGGCTCTCATAAT-GTGGCCGATGAATGTCCTAGACATGTCTTACACT
65 A-ATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGAATGTCCCAGACATGTCTTACACT
13632975 AGCTCACACA
Statistics
Matches: 103, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
138 20 0.19
139 28 0.27
140 54 0.52
141 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (140 bp):
CCGATGCCATGTCCCAGACATAGTCTTACACTAGCCCATATATCAAGCCAATGCAATGTCCCAAA
ATGGTCTTACACTGACTATCATATCGTAGCCGATGAATGTCCCAGACATGTCTTACACTGACTTA
TGTCTCGAGC
Found at i:13640735 original size:46 final size:46
Alignment explanation
Indices: 13640666--13640886 Score: 381
Period size: 46 Copynumber: 4.8 Consensus size: 46
13640656 TGTAACCCGC
* * * *
13640666 CCATAAGCGAACTCGTACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
*
13640712 CAATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
13640758 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
13640804 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
13640850 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
13640887 TGCTCAACCA
Statistics
Matches: 168, Mismatches: 6, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
45 2 0.01
46 166 0.99
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:13642087 original size:27 final size:27
Alignment explanation
Indices: 13642057--13642109 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
13642047 ATCACGAAAT
13642057 TTTCACACAATCATGAAATCATATCAA
1 TTTCACACAATCATGAAATCATATCAA
*
13642084 TTTCACACAATCATGCAATCATATCA
1 TTTCACACAATCATGAAATCATATCA
13642110 TAAACCTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.42, C:0.25, G:0.04, T:0.30
Consensus pattern (27 bp):
TTTCACACAATCATGAAATCATATCAA
Found at i:13645993 original size:51 final size:52
Alignment explanation
Indices: 13645908--13646010 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 52
13645898 GTTCCCTACA
* *
13645908 CTGGCTACCGAAGTAGTCTGGGATTTAGGACCCACATTTTGCTTCTTATAAT
1 CTGGCTACAGAAGTAGTCTGAGATTTAGGACCCACATTTTGCTTCTTATAAT
13645960 CTGGCTACAGAAGTA-TCTGAGATTTAGGACCCACATTTTGCTTCTTATAAT
1 CTGGCTACAGAAGTAGTCTGAGATTTAGGACCCACATTTTGCTTCTTATAAT
13646011 TCCCATATGA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
51 35 0.71
52 14 0.29
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.35
Consensus pattern (52 bp):
CTGGCTACAGAAGTAGTCTGAGATTTAGGACCCACATTTTGCTTCTTATAAT
Found at i:13647566 original size:67 final size:68
Alignment explanation
Indices: 13647436--13647571 Score: 238
Period size: 67 Copynumber: 2.0 Consensus size: 68
13647426 TTCTAATGAA
* *
13647436 ACTAGACTCAACAAGGATTCTGAGAATATAAAATACACTACCTAATTATATCTTTACAATTTATG
1 ACTAGACTCAACAAGGATTCTGAGAATATAAAATAAAATACCTAATTATATCTTTACAATTTATG
13647501 GTG
66 GTG
*
13647504 ACTAGACTCAATAAGGATTCTGAGAATAT-AAATAAAATACCTAATTATATCTTTACAATTTATG
1 ACTAGACTCAACAAGGATTCTGAGAATATAAAATAAAATACCTAATTATATCTTTACAATTTATG
13647568 GTG
66 GTG
13647571 A
1 A
13647572 ATTTCTAAAG
Statistics
Matches: 65, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
67 37 0.57
68 28 0.43
ACGTcount: A:0.41, C:0.14, G:0.12, T:0.33
Consensus pattern (68 bp):
ACTAGACTCAACAAGGATTCTGAGAATATAAAATAAAATACCTAATTATATCTTTACAATTTATG
GTG
Found at i:13648504 original size:46 final size:44
Alignment explanation
Indices: 13648436--13648794 Score: 318
Period size: 46 Copynumber: 7.8 Consensus size: 44
13648426 GTAACCCGCC
* * * *
13648436 CATAAGCGAACTCGTACTCAACTCAACGAGCTCAGGCGTTCGCAT
1 CATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCAT
*
13648481 CAATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAGTT
1 C-ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-A--T
* * * *
13648527 ACATCTCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCTCAT
1 -CA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCAT
* *
13648574 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAAT
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC-AT
*
13648619 CATCCAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAATT
1 CAT--AAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC--A-T
* * *
13648666 ACATCTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 -CA--TAAGTGAACTCGGACTCAACTCAACGAGTTCG-GCATTCGCAT
*
13648713 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCG-GCATTCGCAT
13648759 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 -CATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
13648795 ATGCTCAATC
Statistics
Matches: 269, Mismatches: 22, Indels: 46
0.80 0.07 0.14
Matches are distributed among these distances:
43 1 0.00
44 11 0.04
45 10 0.04
46 169 0.63
47 62 0.23
48 6 0.02
49 7 0.03
50 3 0.01
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (44 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCAT
Found at i:13648552 original size:93 final size:91
Alignment explanation
Indices: 13648440--13648798 Score: 360
Period size: 93 Copynumber: 3.9 Consensus size: 91
13648430 CCCGCCCATA
* * * *
13648440 AGCGAACTCGTACTCAACTCAACGAGCTCAGGCGTTCGCATCAATAAGTGAACTCGGACTCAACT
1 AGCGAACTCGGACTCAACTCAACGAGTTC-GGCATTCGCATCCATAAGTGAACTCGGACTCAACT
13648505 CAACGAGTTCGGATGCCTAGTTACATCTC
65 CAACGAGTTCGGATGCCTA-TT-CATCTC
* *
13648534 A-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCTCATCCATAAGTGAACTCGGACTCAACT
1 AGCGAACTCGGACTCAACTCAACGAGTTCGG-CATTCGCATCCATAAGTGAACTCGGACTCAACT
*
13648598 CAACGAGTTCGGATG-CTCAATCATC-C
65 CAACGAGTTCGGATGCCT-ATTCATCTC
* * * * *
13648624 AAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGC-CTAATTACATCTCA-CGAACTCGGACT
1 -AGCGAACTCGGACTCAACTCAACGAGTTCGGCATTCGC--A-TCCA--TAAGTGAACTCGGACT
* *
13648686 CAACTCAACGAGTTC-GA--AC-ATTCGCATCCATA
60 CAACTCAACGAGTTCGGATGCCTATT--CAT-C-TC
* *
13648718 AGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACTCAACT
1 AGCGAACTCGGACTCAACTCAACGAGTTCG-GCATTCGCATCCATAAGTGAACTCGGACTCAACT
13648783 CAACGAGTTCGGATGC
65 CAACGAGTTCGGATGC
13648799 TCAATCATCC
Statistics
Matches: 222, Mismatches: 21, Indels: 43
0.78 0.07 0.15
Matches are distributed among these distances:
89 3 0.01
90 4 0.02
91 12 0.05
92 64 0.29
93 131 0.59
94 4 0.02
95 3 0.01
96 1 0.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.22
Consensus pattern (91 bp):
AGCGAACTCGGACTCAACTCAACGAGTTCGGCATTCGCATCCATAAGTGAACTCGGACTCAACTC
AACGAGTTCGGATGCCTATTCATCTC
Found at i:13648686 original size:139 final size:138
Alignment explanation
Indices: 13648435--13648798 Score: 543
Period size: 139 Copynumber: 2.6 Consensus size: 138
13648425 TGTAACCCGC
* * * * * * *
13648435 CCATAAGCGAACTCGTACTCAACTCAACGAGCTCAGGCGTTCGCATCAATAAGTGAACTCGGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GACATGCGCATCCATAAGTGAACTCGGACT
* *
13648500 CAACTCAACGAGTTCGGATGCCTAGTTACATCTCACGAACTCAGACTCAACTCAACGAGTTCGGA
65 CAACTCAACGAGTTCGGATGCCTAATTACATCTCACGAACTCAGACTCAACTCAACGAGTTCGAA
*
13648565 CATTCTCAT
130 CATTCGCAT
* *
13648574 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG-GATGCTCAAT-CATCCAAGTGAACTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGACATGCGC-ATCCAT--AAGTGAACTCGGA
*
13648637 CTCAACTCAACGAGTTCGGATGCCTAATTACATCTCACGAACTCGGACTCAACTCAACGAGTTCG
63 CTCAACTCAACGAGTTCGGATGCCTAATTACATCTCACGAACTCAGACTCAACTCAACGAGTTCG
13648702 AACATTCGCAT
128 AACATTCGCAT
*
13648713 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCATAAGTGAACTCGGACT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG-ACATGCGCATCCATAAGTGAACTCGGACT
13648778 CAACTCAACGAGTTCGGATGC
65 CAACTCAACGAGTTCGGATGC
13648799 TCAATCATCC
Statistics
Matches: 204, Mismatches: 15, Indels: 12
0.88 0.06 0.05
Matches are distributed among these distances:
137 5 0.02
138 3 0.01
139 187 0.92
140 2 0.01
141 7 0.03
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (138 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGACATGCGCATCCATAAGTGAACTCGGACTC
AACTCAACGAGTTCGGATGCCTAATTACATCTCACGAACTCAGACTCAACTCAACGAGTTCGAAC
ATTCGCAT
Found at i:13649744 original size:58 final size:58
Alignment explanation
Indices: 13649669--13649785 Score: 225
Period size: 58 Copynumber: 2.0 Consensus size: 58
13649659 GAACCCTTAA
13649669 AATTTCGGCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTC
1 AATTTCGGCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTC
*
13649727 AATTTCGGCCTATTGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTC
1 AATTTCGGCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTC
13649785 A
1 A
13649786 TTTTAACAAC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.40
Consensus pattern (58 bp):
AATTTCGGCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTC
Found at i:13658768 original size:70 final size:70
Alignment explanation
Indices: 13658655--13658790 Score: 245
Period size: 70 Copynumber: 1.9 Consensus size: 70
13658645 GCCGAATGTC
* *
13658655 AATTCACCCGGGGAGTACGAAAATGTACAACGATTTGAAACGTCGATTTTGGTGGCATGGTATGA
1 AATTCACCCGGGGAGCACGAAAATGTACAACGACTTGAAACGTCGATTTTGGTGGCATGGTATGA
13658720 AACGA
66 AACGA
*
13658725 AATTCACCCGGGGAGCACGAAAATGTACAACGACTTGAAACGTCGGTTTTGGTGGCATGGTATGA
1 AATTCACCCGGGGAGCACGAAAATGTACAACGACTTGAAACGTCGATTTTGGTGGCATGGTATGA
13658790 A
66 A
13658791 GCGAGACATC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
70 63 1.00
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.24
Consensus pattern (70 bp):
AATTCACCCGGGGAGCACGAAAATGTACAACGACTTGAAACGTCGATTTTGGTGGCATGGTATGA
AACGA
Found at i:13662449 original size:40 final size:40
Alignment explanation
Indices: 13661985--13662439 Score: 732
Period size: 40 Copynumber: 11.4 Consensus size: 40
13661975 CATTTGAATG
*** * *
13661985 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGA-T
* **
13662025 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
13662065 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
13662105 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
13662145 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
13662185 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
13662225 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
13662265 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
13662305 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
** * *
13662345 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGAT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
** * *
13662385 ATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCT
1 ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
**
13662425 ATGCCCGGGCTAAGA
1 ATATCCGGGCTAAGA
13662440 CCCAAAGGCA
Statistics
Matches: 397, Mismatches: 17, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
40 394 0.99
41 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGAAGCGAAGGCATTTGTGCGAGTTGAT
Found at i:13674458 original size:20 final size:20
Alignment explanation
Indices: 13674415--13674460 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
13674405 ACTGTTTTGT
13674415 TATGGGCCAACTGTATTGAA
1 TATGGGCCAACTGTATTGAA
*
13674435 -ATGGGCTCAACTGTGTT-AA
1 TATGGGC-CAACTGTATTGAA
13674454 TATGGGC
1 TATGGGC
13674461 AAGGCCCAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (20 bp):
TATGGGCCAACTGTATTGAA
Found at i:13679606 original size:24 final size:24
Alignment explanation
Indices: 13679574--13679625 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
13679564 CCACACGGGG
13679574 GTGTGGCCGCCCGTGTGGCAGGCC
1 GTGTGGCCGCCCGTGTGGCAGGCC
13679598 GTGTGGCCGCCCGTGTGGCAGGCC
1 GTGTGGCCGCCCGTGTGGCAGGCC
13679622 GTGT
1 GTGT
13679626 AACAAAACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.04, C:0.31, G:0.46, T:0.19
Consensus pattern (24 bp):
GTGTGGCCGCCCGTGTGGCAGGCC
Found at i:13679623 original size:12 final size:12
Alignment explanation
Indices: 13679574--13679625 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
13679564 CCACACGGGG
*
13679574 GTGTGGCCGCCC
1 GTGTGGCAGCCC
*
13679586 GTGTGGCAGGCC
1 GTGTGGCAGCCC
*
13679598 GTGTGGCCGCCC
1 GTGTGGCAGCCC
*
13679610 GTGTGGCAGGCC
1 GTGTGGCAGCCC
13679622 GTGT
1 GTGT
13679626 AACAAAACAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.04, C:0.31, G:0.46, T:0.19
Consensus pattern (12 bp):
GTGTGGCAGCCC
Found at i:13686977 original size:42 final size:42
Alignment explanation
Indices: 13686867--13687031 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
13686857 TACCGTACCA
* * *
13686867 ATGCCATATCCCAGATATGGTCTTATATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCATATCG
* ** * * *
13686909 AAGTAAATAGCCCAGCTGTGGTCTTACACGAAGTCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * *
13686952 ATGCCATATCCCAGATATGGTCTTACGCGTAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
* * *
13686994 ATGCCATATCCTAAATATGGTCTTACACGTAGTCTCAT
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCAT
13687032 TAACCCTAAT
Statistics
Matches: 100, Mismatches: 21, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
42 70 0.70
43 30 0.30
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:13694989 original size:93 final size:93
Alignment explanation
Indices: 13694830--13695014 Score: 298
Period size: 93 Copynumber: 2.0 Consensus size: 93
13694820 ATGTCGCCAT
* * * *
13694830 ATTTTCAAAGCAAATACGATGGCGGCTAGTTCGAGATCATGGGTCGGATAATTTCTCTCGTGTGG
1 ATTTTCAAAGCAAACACGATGGCAGCTAGTTCAAGATCATGAGTCGGATAATTTCTCTCGTGTGG
*
13694895 CTTCAATTGTCTCGACGCGTAGGCCACA
66 CTTCAATTGTCTCGACGCATAGGCCACA
* *
13694923 ATTTTTAAAGCAAACACGATGGCAGCTAGTTCAAGATCATGAGTCGGATAATTTTTCTCGTGTGG
1 ATTTTCAAAGCAAACACGATGGCAGCTAGTTCAAGATCATGAGTCGGATAATTTCTCTCGTGTGG
*
13694988 CTTTAATTGTCTCGACGCATAGGCCAC
66 CTTCAATTGTCTCGACGCATAGGCCAC
13695015 CACTCGACCT
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 84 1.00
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.30
Consensus pattern (93 bp):
ATTTTCAAAGCAAACACGATGGCAGCTAGTTCAAGATCATGAGTCGGATAATTTCTCTCGTGTGG
CTTCAATTGTCTCGACGCATAGGCCACA
Found at i:13699511 original size:40 final size:40
Alignment explanation
Indices: 13699466--13699617 Score: 207
Period size: 40 Copynumber: 3.8 Consensus size: 40
13699456 ATAACCACAA
* * *
13699466 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
13699506 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
13699546 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
13699586 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
13699618 CATTCAAATG
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 97 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:13701354 original size:14 final size:14
Alignment explanation
Indices: 13701335--13701372 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
13701325 TCCGACTAGG
13701335 GTCACTTTAGGGCT
1 GTCACTTTAGGGCT
13701349 GTCACTTTAGGGCT
1 GTCACTTTAGGGCT
*
13701363 GTCACATTAG
1 GTCACTTTAG
13701373 TGGTTTCTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.34
Consensus pattern (14 bp):
GTCACTTTAGGGCT
Found at i:13710871 original size:42 final size:42
Alignment explanation
Indices: 13710763--13710881 Score: 150
Period size: 43 Copynumber: 2.8 Consensus size: 42
13710753 TATACCAAGT
*
13710763 CCATATCCCAGATATGGTCTTACATGGGATCTCATATCGATG
1 CCATATCCCAGATATGGTCTTACATGGAATCTCATATCGATG
* * *
13710805 CCAATAGCCCAGCTATGGTCTTACAT-GAATCCTCATATTGATG
1 CC-ATATCCCAGATATGGTCTTACATGGAAT-CTCATATCGATG
* * *
13710848 CCATATCCCAGAGATGGTCTTACACGTAATCTCA
1 CCATATCCCAGATATGGTCTTACATGGAATCTCA
13710882 AATAACCCTA
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 28 0.43
43 37 0.57
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (42 bp):
CCATATCCCAGATATGGTCTTACATGGAATCTCATATCGATG
Found at i:13716809 original size:23 final size:23
Alignment explanation
Indices: 13716783--13716836 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 23
13716773 GTATATATAC
13716783 TAGCAGCTTT-TCTGCGTTACAAT
1 TAGCAGCTTTGT-TGCGTTACAAT
*
13716806 TAGCAGCTTTGTTGCGTTACTAT
1 TAGCAGCTTTGTTGCGTTACAAT
*
13716829 TAGTAGCT
1 TAGCAGCT
13716837 ACACTGCGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 27 0.96
24 1 0.04
ACGTcount: A:0.20, C:0.19, G:0.20, T:0.41
Consensus pattern (23 bp):
TAGCAGCTTTGTTGCGTTACAAT
Found at i:13721725 original size:36 final size:36
Alignment explanation
Indices: 13721673--13721745 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
13721663 GAAAGCGTTC
*
13721673 AGTCTATTCTTGCTATCATGATAATAATTGAGAATA
1 AGTCTATTCTTACTATCATGATAATAATTGAGAATA
13721709 AGTCTATTCTTACTATCATGATAATAATTGAGAATA
1 AGTCTATTCTTACTATCATGATAATAATTGAGAATA
13721745 A
1 A
13721746 TTCGAACAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38
Consensus pattern (36 bp):
AGTCTATTCTTACTATCATGATAATAATTGAGAATA
Found at i:13723567 original size:15 final size:15
Alignment explanation
Indices: 13723533--13723568 Score: 51
Period size: 13 Copynumber: 2.6 Consensus size: 15
13723523 TTACTTTTTG
13723533 TTTTT-CTTAGTTAA
1 TTTTTACTTAGTTAA
13723547 --TTTACTTAGTTAA
1 TTTTTACTTAGTTAA
13723560 TTTTTACTT
1 TTTTTACTT
13723569 TTTATAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
12 3 0.16
13 9 0.47
15 7 0.37
ACGTcount: A:0.22, C:0.08, G:0.06, T:0.64
Consensus pattern (15 bp):
TTTTTACTTAGTTAA
Found at i:13725800 original size:26 final size:26
Alignment explanation
Indices: 13725747--13725800 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
13725737 GACATCTGGT
* *
13725747 TGGCATGTTTCGACACGACTCTAGAA
1 TGGCATGTTTCGACACGACTCCAAAA
13725773 TGGCATGTTTCGACACGACTCCAAAA
1 TGGCATGTTTCGACACGACTCCAAAA
13725799 TG
1 TG
13725801 TCACGACAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
TGGCATGTTTCGACACGACTCCAAAA
Found at i:13726967 original size:40 final size:40
Alignment explanation
Indices: 13726923--13727168 Score: 384
Period size: 40 Copynumber: 6.2 Consensus size: 40
13726913 AAGTATCCGG
13726923 GCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
1 GCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
* ** *
13726963 GCTAGTGATGTATCCGGGCTAAGTTTCGTAGAGCATTCGT
1 GCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
*
13727003 GCTATTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
1 GCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
* ** *
13727043 GCTAGTGATGTATCCGGGCTAAGTTTCGTAGAGCATTCGT
1 GCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
*
13727083 GCTATTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
1 GCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
* *
13727123 GCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCGT
1 GCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
13727163 GCTAGT
1 GCTAGT
13727169 TGTAACACCC
Statistics
Matches: 184, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 184 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (40 bp):
GCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGT
Found at i:13727061 original size:80 final size:80
Alignment explanation
Indices: 13726923--13727166 Score: 461
Period size: 80 Copynumber: 3.0 Consensus size: 80
13726913 AAGTATCCGG
*
13726923 GCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTT
1 GCTATTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTT
13726988 TCGTAGAGCATTCGT
66 TCGTAGAGCATTCGT
13727003 GCTATTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTT
1 GCTATTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTT
13727068 TCGTAGAGCATTCGT
66 TCGTAGAGCATTCGT
13727083 GCTATTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTT
1 GCTATTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTT
* *
13727148 CCGAAGAGCATTCGT
66 TCGTAGAGCATTCGT
13727163 GCTA
1 GCTA
13727167 GTTGTAACAC
Statistics
Matches: 161, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 161 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (80 bp):
GCTATTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTT
TCGTAGAGCATTCGT
Found at i:13728643 original size:39 final size:39
Alignment explanation
Indices: 13728522--13729446 Score: 1646
Period size: 39 Copynumber: 23.6 Consensus size: 39
13728512 GCTCCTCGTT
* *
13728522 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * * *
13728562 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
13728602 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728641 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728680 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728719 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728758 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728797 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728836 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728875 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728914 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728953 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13728992 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13729031 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13729070 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13729109 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13729148 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13729187 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13729226 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13729265 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13729304 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
13729343 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
13729382 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
13729423 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
13729447 CATCATCCAA
Statistics
Matches: 865, Mismatches: 13, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
39 794 0.92
40 60 0.07
41 11 0.01
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:13745269 original size:19 final size:18
Alignment explanation
Indices: 13745228--13745283 Score: 53
Period size: 18 Copynumber: 3.1 Consensus size: 18
13745218 TGTTTATAAT
* *
13745228 TTTATTCATTTCTTTAT-
1 TTTATTTATTTATTTATG
13745245 TATTATTGT-TTTACTTTATG
1 T-TTATT-TATTTA-TTTATG
13745265 TTTATTTATTTATTTATG
1 TTTATTTATTTATTTATG
13745283 T
1 T
13745284 GTCCATTATT
Statistics
Matches: 32, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
17 1 0.03
18 16 0.50
19 14 0.44
20 1 0.03
ACGTcount: A:0.20, C:0.05, G:0.05, T:0.70
Consensus pattern (18 bp):
TTTATTTATTTATTTATG
Found at i:13745398 original size:15 final size:15
Alignment explanation
Indices: 13745378--13745411 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
13745368 TTTATTTTTG
*
13745378 TTATTTTCGCTCGTA
1 TTATTTTCGCTCGCA
*
13745393 TTATTTTTGCTCGCA
1 TTATTTTCGCTCGCA
13745408 TTAT
1 TTAT
13745412 CGTAATTGTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.15, C:0.18, G:0.12, T:0.56
Consensus pattern (15 bp):
TTATTTTCGCTCGCA
Found at i:13753053 original size:552 final size:552
Alignment explanation
Indices: 13752010--13757753 Score: 11470
Period size: 552 Copynumber: 10.4 Consensus size: 552
13752000 GTGTTGATTA
* *
13752010 TTTCTTGTCTTTTTGTCAAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13752075 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13752140 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13752205 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13752270 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13752335 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13752400 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13752465 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13752530 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13752562 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13752627 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13752692 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13752757 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13752822 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13752887 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13752952 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13753017 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13753082 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13753114 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13753179 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13753244 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13753309 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13753374 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13753439 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13753504 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13753569 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13753634 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13753666 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13753731 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13753796 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13753861 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13753926 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13753991 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13754056 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13754121 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13754186 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13754218 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13754283 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13754348 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13754413 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13754478 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13754543 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13754608 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13754673 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13754738 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13754770 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13754835 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13754900 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13754965 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13755030 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13755095 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13755160 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13755225 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13755290 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13755322 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13755387 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13755452 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13755517 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13755582 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13755647 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13755712 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13755777 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13755842 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13755874 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13755939 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13756004 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13756069 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13756134 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13756199 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13756264 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13756329 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13756394 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13756426 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13756491 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13756556 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13756621 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13756686 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13756751 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13756816 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13756881 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13756946 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13756978 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13757043 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13757108 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13757173 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
196 TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
13757238 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
261 TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
13757303 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
326 TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
13757368 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
391 TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
13757433 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
456 TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
13757498 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
521 ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
13757530 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
1 TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
13757595 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
66 TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
13757660 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
131 GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
13757725 TCCGCATGGGATAGTGAATCGCTTTCGGG
196 TCCGCATGGGATAGTGAATCGCTTTCGGG
13757754 TCTGCATAAT
Statistics
Matches: 5190, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
552 5190 1.00
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (552 bp):
TTTCTTGTCTTTTAGTCGAAAGTTGAAAATTCGATTTAAATTTACGATCCTCTCATTGCATCTCT
TTTGTTTTGAGTTATATTTTTTTATCGTGTTCTGTATTTTATTTTATACCTCTGCACATTACATT
GCATGACCGCTGGTCATACCCTTTTAAGTGGGAGTGAGAAACTACGCCTTCGTGAGGTTTTCACC
TCCGCATGGGATAGTGAATCGCTTTCGGGATACATCCGTACCTATGTCTTCGTGAGATTTTCATC
TCCGCATGGCCATAGGGAAATGTATTCCCTTGAACTGAACTCAGTCCGTATGAGCCTATAATGGG
TGAGGATCGAGGAATCTGCTGGTTCAGGTACCCTTACTTTAGAACTAAACCTCATGTAGTGAACC
TTAGGAGCCCACCCTAGGTAGAACCACCTCGAACCCCTAGTATTCACCCAAATAGGTGTTCTATT
TATTCTTACTTGCTTTTGCTTTGTACTAACATGTTTTCTTTTTGTTATGATTGCATTGCATTTTC
ATCATAAAAAGAGGTGTTGATTCACGTTCGGT
Found at i:13760571 original size:17 final size:18
Alignment explanation
Indices: 13760539--13760573 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
13760529 GAAAACCAAA
*
13760539 AACTTTATGATATCATTG
1 AACTTAATGATATCATTG
13760557 AACTTAATG-TATCATTG
1 AACTTAATGATATCATTG
13760574 CCTTGAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.43
Consensus pattern (18 bp):
AACTTAATGATATCATTG
Found at i:13761454 original size:9 final size:9
Alignment explanation
Indices: 13761440--13761474 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
13761430 TTTTTATTAA
13761440 TATTTTATT
1 TATTTTATT
13761449 TATTTTATT
1 TATTTTATT
13761458 TATTTTATT
1 TATTTTATT
13761467 TATTTTAT
1 TATTTTAT
13761475 AATAGATCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (9 bp):
TATTTTATT
Found at i:13768652 original size:22 final size:19
Alignment explanation
Indices: 13768619--13768658 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 19
13768609 AAAGCAAAGC
13768619 TGGGGAGTAATAATGAAATT
1 TGGGGAGTAATAA-GAAATT
13768639 TGGGGAGTGGAATAAGAAAT
1 TGGGGAGT--AATAAGAAAT
13768659 AAAGAATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 5 0.28
22 5 0.28
ACGTcount: A:0.40, C:0.00, G:0.35, T:0.25
Consensus pattern (19 bp):
TGGGGAGTAATAAGAAATT
Found at i:13771335 original size:12 final size:11
Alignment explanation
Indices: 13771308--13771347 Score: 62
Period size: 11 Copynumber: 3.5 Consensus size: 11
13771298 AATTTTAAAA
13771308 TTTTAAAATAT
1 TTTTAAAATAT
13771319 TTTTAAAATACT
1 TTTTAAAATA-T
*
13771331 TTTTAAAATTT
1 TTTTAAAATAT
13771342 TTTTAA
1 TTTTAA
13771348 TTTTTAAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:13772905 original size:6 final size:6
Alignment explanation
Indices: 13772894--13772918 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
13772884 TAAGTTTCCA
13772894 AAAATG AAAATG AAAATG AAAATG A
1 AAAATG AAAATG AAAATG AAAATG A
13772919 TCCATTTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:13775572 original size:27 final size:26
Alignment explanation
Indices: 13775508--13775579 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 26
13775498 TTTTTCACAC
*
13775508 TCAAGTCTTTGTTTCAAAATTATAAA
1 TCAAGTCTTTGTTTCAAAATCATAAA
*
13775534 TCCAAGTTTTTGTTTCAAAATCATAACA
1 T-CAAGTCTTTGTTTCAAAATCATAA-A
* *
13775562 TCAACTCTTTGATTCAAA
1 TCAAGTCTTTGTTTCAAA
13775580 TTGAACTTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.03
27 36 0.92
28 2 0.05
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.40
Consensus pattern (26 bp):
TCAAGTCTTTGTTTCAAAATCATAAA
Found at i:13775869 original size:20 final size:20
Alignment explanation
Indices: 13775841--13775883 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
13775831 AAAACAGTTT
* *
13775841 AAACTTTTTTAACTCAATTG
1 AAACATTTTTAAATCAATTG
13775861 AAACATTTTTAAATCAATTG
1 AAACATTTTTAAATCAATTG
13775881 AAA
1 AAA
13775884 AACTACTCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.12, G:0.05, T:0.40
Consensus pattern (20 bp):
AAACATTTTTAAATCAATTG
Found at i:13776896 original size:5 final size:5
Alignment explanation
Indices: 13776886--13776919 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
13776876 CAAATATATT
13776886 CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTTT
1 CTTTC CTTTC CTTTC CTTTC CTTTC CTTTC CTTT
13776920 AATTATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (5 bp):
CTTTC
Found at i:13776997 original size:19 final size:18
Alignment explanation
Indices: 13776973--13777009 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
13776963 TCATCCTAAG
*
13776973 TTTTATTTAGTAAATAAAT
1 TTTTATTTAATAAA-AAAT
13776992 TTTTATTTAATAAAAAAT
1 TTTTATTTAATAAAAAAT
13777010 CTTGCTCCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (18 bp):
TTTTATTTAATAAAAAAT
Found at i:13784435 original size:29 final size:30
Alignment explanation
Indices: 13784380--13784436 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
13784370 ATCTATCCTA
* **
13784380 AAAAGAAAAGAGAAAACTTAATTTAAAATG
1 AAAAGAAAAGAGAAAACCTAACCTAAAATG
13784410 AAAAGAAAAGA-AAAACCTAACCTAAAA
1 AAAAGAAAAGAGAAAACCTAACCTAAAA
13784437 CTATGAAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 13 0.54
30 11 0.46
ACGTcount: A:0.67, C:0.09, G:0.11, T:0.14
Consensus pattern (30 bp):
AAAAGAAAAGAGAAAACCTAACCTAAAATG
Found at i:13785870 original size:20 final size:20
Alignment explanation
Indices: 13785845--13785882 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13785835 ATAAAGACCG
*
13785845 TAATTCTTAGAAAATAAAAT
1 TAATTCTAAGAAAATAAAAT
*
13785865 TAATTCTAAGTAAATAAA
1 TAATTCTAAGAAAATAAA
13785883 TTATCACTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (20 bp):
TAATTCTAAGAAAATAAAAT
Found at i:13793137 original size:50 final size:50
Alignment explanation
Indices: 13793031--13793272 Score: 184
Period size: 50 Copynumber: 4.7 Consensus size: 50
13793021 GGGAATGAGA
* * **
13793031 TCCCATGTAAGACCATGTCTGAGACATGGCATTGGCATTATTGAGGTTATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGA---TATGAGAGG
* *
13793087 TCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
* * * **
13793137 TCTCC-CGTAAGACCGTGTCTTGGACATGGCATGGGCACCGATATGAGAAC
1 TC-CCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
* * * * * * * * **
13793187 TCTCATGTAAAACCATATCTGGGATATGGCATTTGCA--GTATAGGAAACA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCG-ATATGAGAGG
* *
13793236 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
13793273 TGTTATTATC
Statistics
Matches: 151, Mismatches: 32, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
48 1 0.01
49 38 0.25
50 74 0.49
51 2 0.01
53 3 0.02
56 33 0.22
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (50 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGG
Found at i:13795685 original size:31 final size:30
Alignment explanation
Indices: 13795645--13795707 Score: 108
Period size: 31 Copynumber: 2.1 Consensus size: 30
13795635 AACATAATTG
*
13795645 ATAAGTGCTAAGTAGTCATAGATTCTGATA
1 ATAAGTGCTAAGTAATCATAGATTCTGATA
13795675 ATAATGTGCTAAGTAATCATAGATTCTGATA
1 ATAA-GTGCTAAGTAATCATAGATTCTGATA
13795706 AT
1 AT
13795708 CCAATTACCA
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.35
Consensus pattern (30 bp):
ATAAGTGCTAAGTAATCATAGATTCTGATA
Found at i:13798063 original size:27 final size:27
Alignment explanation
Indices: 13798033--13798094 Score: 97
Period size: 27 Copynumber: 2.3 Consensus size: 27
13798023 CCTATAAGGT
13798033 AGGCGCCAATGAAGGTGCCTAATAGAG
1 AGGCGCCAATGAAGGTGCCTAATAGAG
* * *
13798060 AGGCTCCAATGAAGTTGCCTCATAGAG
1 AGGCGCCAATGAAGGTGCCTAATAGAG
13798087 AGGCGCCA
1 AGGCGCCA
13798095 TTTTTTAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.16
Consensus pattern (27 bp):
AGGCGCCAATGAAGGTGCCTAATAGAG
Found at i:13798206 original size:137 final size:136
Alignment explanation
Indices: 13797954--13798207 Score: 375
Period size: 137 Copynumber: 1.8 Consensus size: 136
13797944 AATTTTATAT
13797954 ATTTTTTAATATTTTTTAAAAAAATACGGGTCAAAATACGGTCAAAGGGTCGGGTCGGGTCGGGT
1 ATTTTTTAATATTTTTTAAAAAAATACGGGTCAAAATACGGTCAAA--G--GGGTCGGGTCGGGT
* *
13798019 GGCGCCTATAAGGTAGGCGCCAATGAAGGTGCCTAATAGAGAGGCTCCAATGAAGTTGCCTCATA
62 GGCGCCTATAAGGTAGACGCCAATGAAGGTGCCTAATAGAGAGGCGCCAATGAAGTTGCCTCATA
13798084 GAGAGGCGCC
127 GAGAGGCGCC
*
13798094 ATTTTTTAATATTTTTTTTAAAAAAATACGGGTCAAAATACGGTGAAA-GGGTCGGGTCGGGTGG
1 ATTTTTTAATA--TTTTTTAAAAAAATACGGGTCAAAATACGGTCAAAGGGGTCGGGTCGGGTGG
** * * *
13798158 CTTCTCTCAGGTAGACGCCAATGAAGGTGCCTCATAGAGAGGCGCCAATG
64 CGCCTATAAGGTAGACGCCAATGAAGGTGCCTAATAGAGAGGCGCCAATG
13798208 GTGGCCTTCT
Statistics
Matches: 104, Mismatches: 8, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
137 59 0.57
140 11 0.11
142 34 0.33
ACGTcount: A:0.29, C:0.17, G:0.28, T:0.26
Consensus pattern (136 bp):
ATTTTTTAATATTTTTTAAAAAAATACGGGTCAAAATACGGTCAAAGGGGTCGGGTCGGGTGGCG
CCTATAAGGTAGACGCCAATGAAGGTGCCTAATAGAGAGGCGCCAATGAAGTTGCCTCATAGAGA
GGCGCC
Found at i:13798347 original size:14 final size:15
Alignment explanation
Indices: 13798325--13798373 Score: 61
Period size: 14 Copynumber: 3.5 Consensus size: 15
13798315 AAAAAAAAAG
13798325 AGAGAAAGGAGAAGA
1 AGAGAAAGGAGAAGA
13798340 AGAG-AAGGAGAAGA
1 AGAGAAAGGAGAAGA
13798354 AGAAGAAA-GA-AAGA
1 AG-AGAAAGGAGAAGA
13798368 A-AGAAA
1 AGAGAAA
13798374 AAGGTAATGT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
12 5 0.16
14 17 0.53
15 8 0.25
16 2 0.06
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (15 bp):
AGAGAAAGGAGAAGA
Found at i:13798368 original size:17 final size:17
Alignment explanation
Indices: 13798322--13798368 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
13798312 AGAAAAAAAA
* *
13798322 AAGAGAGAAAGGAGAAG
1 AAGAAAGAAAGAAGAAG
*
13798339 AAGAGAAG-GAGAAGAAG
1 AAGA-AAGAAAGAAGAAG
13798356 AAGAAAGAAAGAA
1 AAGAAAGAAAGAA
13798369 AGAAAAAGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
16 3 0.12
17 19 0.79
18 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (17 bp):
AAGAAAGAAAGAAGAAG
Found at i:13798628 original size:120 final size:121
Alignment explanation
Indices: 13798504--13798722 Score: 354
Period size: 120 Copynumber: 1.8 Consensus size: 121
13798494 ATTTAGTGTA
*
13798504 TATAG-TTTAGATTAG-AATTTTGTATGAATATTCTAACTTTTTTGTATGAATATTGTAATTTTT
1 TATAGTTTTAGATTAGTAA-TTTGTATGAATATTCTAA-TTTTTTGTATGAATATTGTAATTTTG
13798567 TATGAATATTGTAA-TGTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATT
64 TATGAATATTGTAATTGTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATT
* *
13798624 TATAGTTTTGGATTAGTAATTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTGTA
1 TATAGTTTTAGATTAGTAATTTGTATGAATATTCTAATTTTTTGTATGAATATTGTAATTTTGTA
*
13798689 TGAATATTGTAATTTTTTGTATGAATATTGTAAT
66 TGAATATTGTAA-TTGTTGTATGAATATTGTAAT
13798723 ATTATAGTTT
Statistics
Matches: 91, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
120 44 0.48
121 26 0.29
122 21 0.23
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (121 bp):
TATAGTTTTAGATTAGTAATTTGTATGAATATTCTAATTTTTTGTATGAATATTGTAATTTTGTA
TGAATATTGTAATTGTTGTATGAATATTGTAATTATTTTATAATTAAATTTGTATT
Found at i:13798728 original size:101 final size:99
Alignment explanation
Indices: 13798544--13798734 Score: 289
Period size: 101 Copynumber: 1.9 Consensus size: 99
13798534 TTCTAACTTT
13798544 TTTGTATGAATATTGTAATTTTTTATGAATATTGTAATGTTGTATGAATATTGTAATTATTTTAT
1 TTTGTATGAATATTGTAATTTTTTATGAATATTGTAATGTTGTATGAATATTGTAATTATTTTAT
*
13798609 AATTAAATTTGTATTTATAGTTTTGGATTAGTAA
66 AATGAAATTTGTATTTATAGTTTTGGATTAGTAA
*
13798643 TTTGTATGAATATTGTAATTTTTTGTATGAATATTGTAATTTTGTATGAATATTGTAATT-TTTT
1 TTTGTATGAATATTGTAA-TTTTT-TATGAATATTGTAATGTTGTATGAATATTGTAATTATTTT
*
13798707 GT-ATG-AATATTGTAATATTATAGTTTTG
64 ATAATGAAAT-TTGT-AT-TTATAGTTTTG
13798735 TATGAATATT
Statistics
Matches: 84, Mismatches: 3, Indels: 8
0.88 0.03 0.08
Matches are distributed among these distances:
98 3 0.04
99 24 0.29
100 12 0.14
101 45 0.54
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (99 bp):
TTTGTATGAATATTGTAATTTTTTATGAATATTGTAATGTTGTATGAATATTGTAATTATTTTAT
AATGAAATTTGTATTTATAGTTTTGGATTAGTAA
Found at i:13798739 original size:27 final size:25
Alignment explanation
Indices: 13798672--13798798 Score: 142
Period size: 27 Copynumber: 5.1 Consensus size: 25
13798662 TTTTTGTATG
13798672 AATATTGTAATTTTGTATGAATATTGT
1 AATATT-T-ATTTTGTATGAATATTGT
13798699 -A-A-TT-TTTTGTATGAATATTGT
1 AATATTTATTTTGTATGAATATTGT
13798720 AATATTATAGTTTTGTATGAATATTG-
1 AATATT-TA-TTTTGTATGAATATTGT
*
13798746 CA-ATTT-TTTTGTATGAATATTGT
1 AATATTTATTTTGTATGAATATTGT
13798769 AATATTGTAATTTTGTATGAATATTGT
1 AATATT-T-ATTTTGTATGAATATTGT
13798796 AAT
1 AAT
13798799 GTCGGGATAT
Statistics
Matches: 87, Mismatches: 2, Indels: 22
0.78 0.02 0.20
Matches are distributed among these distances:
21 17 0.20
22 17 0.20
23 3 0.03
24 6 0.07
25 6 0.07
26 2 0.02
27 36 0.41
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (25 bp):
AATATTTATTTTGTATGAATATTGT
Found at i:13798773 original size:49 final size:48
Alignment explanation
Indices: 13798672--13798851 Score: 222
Period size: 49 Copynumber: 3.7 Consensus size: 48
13798662 TTTTTGTATG
*
13798672 AATATTGTAATTTTGTATGAATATTGTAATTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGCAATTTTTTGTATGAATATTGT
* *
13798720 AATATTATAGTTTTGTATGAATATTGCAATTTTTTTGTATGAATATTGT
1 AATATTGTAATTTTGTATGAATATTGCAA-TTTTTTGTATGAATATTGT
* * ** *
13798769 AATATTGTAATTTTGTATGAATATTGTAA-TGTCGGGAT--ATATTGT
1 AATATTGTAATTTTGTATGAATATTGCAATTTTTTGTATGAATATTGT
*
13798814 AATATTGTAATTTTTTGTATGAATATTGTAATTATTTT
1 AATATTGTAA--TTTTGTATGAATATTGCAATT-TTTT
13798852 ATAATTAATT
Statistics
Matches: 114, Mismatches: 13, Indels: 9
0.84 0.10 0.07
Matches are distributed among these distances:
45 17 0.15
47 24 0.21
48 27 0.24
49 46 0.40
ACGTcount: A:0.31, C:0.01, G:0.15, T:0.53
Consensus pattern (48 bp):
AATATTGTAATTTTGTATGAATATTGCAATTTTTTGTATGAATATTGT
Found at i:13798798 original size:19 final size:19
Alignment explanation
Indices: 13798519--13798722 Score: 182
Period size: 19 Copynumber: 10.2 Consensus size: 19
13798509 TTTAGATTAG
*
13798519 AATTTTGTATGAATATTCT
1 AATTTTGTATGAATATTGT
13798538 AACTTTTTTGTATGAATATTGT
1 AA---TTTTGTATGAATATTGT
*
13798560 AATTTTTTATGAATATTGT
1 AATTTTGTATGAATATTGT
*
13798579 AATGTTGTATGAATATTGT
1 AATTTTGTATGAATATTGT
*
13798598 AATTATTTTAT-AATTAAATTTGT
1 AATT-TTGTATGAA-T--A-TTGT
* * *
13798621 -ATTTATAGTTTTGGAT-TAGT
1 AATTT-T-G-TATGAATATTGT
13798641 AA-TTTGTATGAATATTGT
1 AATTTTGTATGAATATTGT
13798659 AATTTTTTGTATGAATATTGT
1 AA--TTTTGTATGAATATTGT
13798680 AATTTTGTATGAATATTGT
1 AATTTTGTATGAATATTGT
13798699 AATTTTTTGTATGAATATTGT
1 AA--TTTTGTATGAATATTGT
13798720 AAT
1 AAT
13798723 ATTATAGTTT
Statistics
Matches: 153, Mismatches: 13, Indels: 38
0.75 0.06 0.19
Matches are distributed among these distances:
17 5 0.03
18 6 0.04
19 61 0.40
20 11 0.07
21 39 0.25
22 23 0.15
23 4 0.03
24 3 0.02
25 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.54
Consensus pattern (19 bp):
AATTTTGTATGAATATTGT
Found at i:13799040 original size:38 final size:38
Alignment explanation
Indices: 13798995--13799076 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
13798985 CATATAAAGT
13798995 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
*
13799033 TTATAAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
13799071 TTATAA
1 TTATAA
13799077 CTGACTTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATCATTTCATTAAAAGTTTAA
Found at i:13799142 original size:16 final size:15
Alignment explanation
Indices: 13799115--13799154 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 15
13799105 TAACTCATTT
13799115 AATTTATATATAATGTA
1 AATTT-TATATAAT-TA
*
13799132 ACTTTTATATAATTA
1 AATTTTATATAATTA
13799147 AATTTTAT
1 AATTTTAT
13799155 TTGATTTTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
16 8 0.38
17 4 0.19
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (15 bp):
AATTTTATATAATTA
Found at i:13800787 original size:6 final size:6
Alignment explanation
Indices: 13800776--13800828 Score: 88
Period size: 6 Copynumber: 8.8 Consensus size: 6
13800766 GCATCATGCA
*
13800776 CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG ACAGAG
1 CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG
*
13800824 ACAGA
1 CCAGA
13800829 ACTACATTCT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.38, C:0.30, G:0.32, T:0.00
Consensus pattern (6 bp):
CCAGAG
Found at i:13804181 original size:22 final size:23
Alignment explanation
Indices: 13804156--13804201 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
13804146 ATACCTTATT
*
13804156 TTTTTATTCT-TTTCCTTCCTTC
1 TTTTTATTCTGCTTCCTTCCTTC
*
13804178 -TTTTCTTCTGCTTCCTTCCTTC
1 TTTTTATTCTGCTTCCTTCCTTC
13804200 TT
1 TT
13804202 ATTTCTTCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
21 8 0.40
22 11 0.55
23 1 0.05
ACGTcount: A:0.02, C:0.30, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTTATTCTGCTTCCTTCCTTC
Found at i:13804339 original size:27 final size:27
Alignment explanation
Indices: 13804266--13804341 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
13804256 AAAATCAAAG
*
13804266 CATTGGCGCCTCTTAG-TATGGCACTAA
1 CATTGGCGCCTCTTAGATA-GGCACCAA
* * ** * *
13804293 TAATGGCGCCTCCCAAATAGGCACCAC
1 CATTGGCGCCTCTTAGATAGGCACCAA
13804320 CATTGGCGCCTCTTAGATAGGC
1 CATTGGCGCCTCTTAGATAGGC
13804342 GTCAATACTA
Statistics
Matches: 36, Mismatches: 12, Indels: 2
0.72 0.24 0.04
Matches are distributed among these distances:
27 34 0.94
28 2 0.06
ACGTcount: A:0.24, C:0.30, G:0.22, T:0.24
Consensus pattern (27 bp):
CATTGGCGCCTCTTAGATAGGCACCAA
Found at i:13806887 original size:29 final size:29
Alignment explanation
Indices: 13806836--13806892 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
13806826 ATTAAAATAT
*
13806836 TAATTAACATAAAATAACATAATTGAATG
1 TAATTAACATAAAATAACATAATGGAATG
* * * *
13806865 TAATTAACCTAAGATATCCTAATGGAAT
1 TAATTAACATAAAATAACATAATGGAAT
13806893 TTCCTATTCT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.49, C:0.11, G:0.09, T:0.32
Consensus pattern (29 bp):
TAATTAACATAAAATAACATAATGGAATG
Found at i:13807470 original size:10 final size:10
Alignment explanation
Indices: 13807451--13807481 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
13807441 ATAAAATTGT
13807451 CTAAGTCTAA
1 CTAAGTCTAA
*
13807461 CTAGGTCTAA
1 CTAAGTCTAA
13807471 CTAAGTCTAA
1 CTAAGTCTAA
13807481 C
1 C
13807482 CCATCTAACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (10 bp):
CTAAGTCTAA
Found at i:13810045 original size:18 final size:20
Alignment explanation
Indices: 13810017--13810064 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
13810007 GCTCTCCAAT
13810017 TCTTCTCTCTCCAAAAATCC
1 TCTTCTCTCTCCAAAAATCC
13810037 TCTTCTCTCTCCAAAAATCC
1 TCTTCTCTCTCCAAAAATCC
*
13810057 TCTCCTCT
1 TCTTCTCT
13810065 TTTCTTCTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.38
Consensus pattern (20 bp):
TCTTCTCTCTCCAAAAATCC
Found at i:13810879 original size:57 final size:58
Alignment explanation
Indices: 13810774--13810882 Score: 166
Period size: 57 Copynumber: 1.9 Consensus size: 58
13810764 GGACTAAATA
** *
13810774 ATAAATTATACAATTTGATGGGGCAAAAATATAAATAACAAAGATTAAAAGTGTAGGG
1 ATAAATTATACAATTTGAAAGGGCAAAAATATAAACAACAAAGATTAAAAGTGTAGGG
* *
13810832 ATAAATTATACAATTT-AAAGGGTAGAAATATAAACAACAAAGATTAAAAGT
1 ATAAATTATACAATTTGAAAGGGCAAAAATATAAACAACAAAGATTAAAAGT
13810883 TCAAGTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 30 0.65
58 16 0.35
ACGTcount: A:0.53, C:0.06, G:0.16, T:0.26
Consensus pattern (58 bp):
ATAAATTATACAATTTGAAAGGGCAAAAATATAAACAACAAAGATTAAAAGTGTAGGG
Found at i:13822762 original size:31 final size:31
Alignment explanation
Indices: 13822724--13822782 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
13822714 GTAGAAGGCT
* *
13822724 TTCCCTACTAGTTTATCCAACATTTGATCAA
1 TTCCCTACCAGTCTATCCAACATTTGATCAA
13822755 TTCCCTACCAGTCTATCCAACATTTGAT
1 TTCCCTACCAGTCTATCCAACATTTGAT
13822783 AAATAAACAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.27, C:0.29, G:0.07, T:0.37
Consensus pattern (31 bp):
TTCCCTACCAGTCTATCCAACATTTGATCAA
Found at i:13830376 original size:20 final size:21
Alignment explanation
Indices: 13830353--13830391 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
13830343 TAAATTTCAA
13830353 TTTAACCAAAAA-TATTTATT
1 TTTAACCAAAAATTATTTATT
*
13830373 TTTACCCAAAAATTATTTA
1 TTTAACCAAAAATTATTTA
13830392 AAACCATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTAACCAAAAATTATTTATT
Found at i:13831651 original size:14 final size:15
Alignment explanation
Indices: 13831623--13831660 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
13831613 ATGTTTCACC
13831623 TCCTTCGTT-CTCTTT
1 TCCTTC-TTCCTCTTT
13831638 TCC-TCTTCCTCTTT
1 TCCTTCTTCCTCTTT
13831652 TCCTTCTTC
1 TCCTTCTTC
13831661 TTGCCTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.00, C:0.39, G:0.03, T:0.58
Consensus pattern (15 bp):
TCCTTCTTCCTCTTT
Found at i:13837692 original size:74 final size:74
Alignment explanation
Indices: 13837571--13837718 Score: 251
Period size: 74 Copynumber: 2.0 Consensus size: 74
13837561 GCGTCGTCCC
*
13837571 CTCCACGTGCTGTCTGACACCTTTCTGCCATCGTTACCTACAAGGAAGAACAGACACGCAAAGCA
1 CTCCACGTGCTGTCTGACACCTTTCTGCCATCGTTACCTACAAGGAAGAACAAACACGCAAAGCA
13837636 GCAACAGAG
66 GCAACAGAG
* * *
13837645 CTCCACGTGCTGTCTGACACCTTTCTGCCATCGTTACCTGCAAGGAAGAACAAATATGCAAAGCA
1 CTCCACGTGCTGTCTGACACCTTTCTGCCATCGTTACCTACAAGGAAGAACAAACACGCAAAGCA
*
13837710 GTAACAGAG
66 GCAACAGAG
13837719 AAACAGTAGC
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.20
Consensus pattern (74 bp):
CTCCACGTGCTGTCTGACACCTTTCTGCCATCGTTACCTACAAGGAAGAACAAACACGCAAAGCA
GCAACAGAG
Found at i:13841451 original size:20 final size:20
Alignment explanation
Indices: 13841426--13841465 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
13841416 AGAAACAGAT
13841426 CCTACCTTACAAAGAATCAA
1 CCTACCTTACAAAGAATCAA
13841446 CCTACCTTACAAAGAATCAA
1 CCTACCTTACAAAGAATCAA
13841466 TGGAATCCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.30, G:0.05, T:0.20
Consensus pattern (20 bp):
CCTACCTTACAAAGAATCAA
Found at i:13843134 original size:50 final size:44
Alignment explanation
Indices: 13843062--13843283 Score: 151
Period size: 45 Copynumber: 4.9 Consensus size: 44
13843052 TGAAACCACA
* * *
13843062 AATCTTATAC-CCCTAAATTTGCAGTGGGATAGATTGAAGTCATCATAGT
1 AATCTTAT-CTCCCTGAAGTTGCAGTGGAATAGATTGAAG-C--CAT--T
13843111 GAATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCCATT
1 -AATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCCATT
** ** * ** **
13843156 AGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAAC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCCATT
* * * ** **
13843200 AAGTCTTATCTCCCTGAAGTTGTAGTGG-ATCAAACTGAAGATAGCG
1 AA-TCTTATCTCCCTGAAGTTGCAGTGGAAT-AGATTGAAGCCA-TT
* *
13843246 AATCTTATTTCCCTGAAGTTGCAGTGGAATGGATTGAA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAA
13843284 TCTATAAATT
Statistics
Matches: 142, Mismatches: 25, Indels: 15
0.78 0.14 0.08
Matches are distributed among these distances:
44 36 0.25
45 63 0.44
46 4 0.03
47 3 0.02
49 2 0.01
50 34 0.24
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAATAGATTGAAGCCATT
Done.