Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 48 of 322
Found at i:14500309 original size:19 final size:19
Alignment explanation
Indices: 14500281--14500338 Score: 71
Period size: 19 Copynumber: 3.0 Consensus size: 19
14500271 ATCTTCAGGG
*
14500281 ATATGCAATCTTAGATATA
1 ATATACAATCTTAGATATA
* *
14500300 ATATATAATCTTAGATATG
1 ATATACAATCTTAGATATA
*
14500319 ATATGCAATCTTAGAATATA
1 ATATACAATCTTAG-ATATA
14500339 TGATTTTGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 28 0.88
20 4 0.12
ACGTcount: A:0.43, C:0.09, G:0.10, T:0.38
Consensus pattern (19 bp):
ATATACAATCTTAGATATA
Found at i:14500949 original size:48 final size:48
Alignment explanation
Indices: 14500895--14501056 Score: 132
Period size: 48 Copynumber: 3.2 Consensus size: 48
14500885 TTTTTAAGTT
*
14500895 TATATATGTAATTATTATTTTTATGATTTATATATTTATTACCTTATA
1 TATATATGTAATTATTATTTTTATGATTTATATATTTATTAACTTATA
** * *
14500943 TATATATGTACGTA-TATATATAAT-ACTTTCTATACATATTT-TATAATTTCTATATA
1 TATATATGTAATTATTAT-TTTTATGA--TT-TAT--ATATTTAT-TAA---CT-TATA
* * *
14500999 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATA
1 TATATATGTAATTATTATTTTTATGATTTATATATTTATTAACTTATA
14501047 TATATATGTA
1 TATATATGTA
14501057 CGTATATATA
Statistics
Matches: 88, Mismatches: 12, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
47 4 0.05
48 30 0.34
49 4 0.05
50 3 0.03
51 1 0.01
52 17 0.19
53 1 0.01
54 3 0.03
55 3 0.03
56 18 0.20
57 4 0.05
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.53
Consensus pattern (48 bp):
TATATATGTAATTATTATTTTTATGATTTATATATTTATTAACTTATA
Found at i:14500981 original size:20 final size:20
Alignment explanation
Indices: 14500958--14501004 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
14500948 ATGTACGTAT
*
14500958 ATATATAATACTTTCTATAC
1 ATATATAATAATTTCTATAC
* * *
14500978 ATATTTTATAATTTCTATAT
1 ATATATAATAATTTCTATAC
14500998 ATATATA
1 ATATATA
14501005 TGTAATCATT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATATAATAATTTCTATAC
Found at i:14501022 original size:104 final size:106
Alignment explanation
Indices: 14500895--14501097 Score: 329
Period size: 104 Copynumber: 1.9 Consensus size: 106
14500885 TTTTTAAGTT
* * * *
14500895 TATATATGTAATTATTATTTTTATGATTTATATATTTATTACCTTATATATATATGTACG-TATA
1 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGATATA
14500959 TATATA-ATACTTTCTATACATATTTTATAATTTCTATATA
66 TATATATATACTTTCTATACATATTTTATAATTTCTATATA
14500999 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGTATAT
1 TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACG-ATAT
*
14501064 ATATATATTATACTTTCTATCCATATTTTATAAT
65 ATATATA-TATACTTTCTATACATATTTTATAAT
14501098 AAATAATAAA
Statistics
Matches: 90, Mismatches: 5, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
104 56 0.62
106 10 0.11
108 24 0.27
ACGTcount: A:0.35, C:0.08, G:0.04, T:0.53
Consensus pattern (106 bp):
TATATATGTAATCATTATCTTTATGATCTATATATTTATTAACTTATATATATATGTACGATATA
TATATATATACTTTCTATACATATTTTATAATTTCTATATA
Found at i:14506883 original size:27 final size:27
Alignment explanation
Indices: 14506861--14506916 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
14506851 CAAAGCAATG
*
14506861 ATGACGCAAGCAATGATGGAAGCAACC
1 ATGACACAAGCAATGATGGAAGCAACC
*
14506888 ATGACACAAGCAGTGATGGAAGCAACC
1 ATGACACAAGCAATGATGGAAGCAACC
14506915 AT
1 AT
14506917 TAATTCAAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.21, G:0.25, T:0.12
Consensus pattern (27 bp):
ATGACACAAGCAATGATGGAAGCAACC
Found at i:14508841 original size:16 final size:15
Alignment explanation
Indices: 14508816--14508845 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14508806 TACTTTATAG
14508816 TTTTCTTTTGTAAAC
1 TTTTCTTTTGTAAAC
14508831 TTTTCCTTTTGTAAA
1 TTTT-CTTTTGTAAA
14508846 AAAGAGTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTTCTTTTGTAAAC
Found at i:14509356 original size:16 final size:15
Alignment explanation
Indices: 14509335--14509364 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14509325 TAGACTTTTT
14509335 TTTACAAAAGGAAAAG
1 TTTACAAAA-GAAAAG
14509351 TTTACAAAAGAAAA
1 TTTACAAAAGAAAA
14509365 CTATAAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (15 bp):
TTTACAAAAGAAAAG
Found at i:14511194 original size:16 final size:15
Alignment explanation
Indices: 14511169--14511198 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14511159 TACTTTATAG
14511169 TTTTCTTTTGTAAAC
1 TTTTCTTTTGTAAAC
14511184 TTTTCCTTTTGTAAA
1 TTTT-CTTTTGTAAA
14511199 AAAGAGTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.20, C:0.13, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTTCTTTTGTAAAC
Found at i:14511971 original size:16 final size:15
Alignment explanation
Indices: 14511950--14511979 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
14511940 TATACTCTTT
14511950 TTTACAAAAGGAAAAG
1 TTTACAAAA-GAAAAG
14511966 TTTACAAAAGAAAA
1 TTTACAAAAGAAAA
14511980 CTATAAAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.07, G:0.13, T:0.20
Consensus pattern (15 bp):
TTTACAAAAGAAAAG
Found at i:14521808 original size:305 final size:305
Alignment explanation
Indices: 14521253--14522178 Score: 1426
Period size: 307 Copynumber: 3.0 Consensus size: 305
14521243 TCTTTGTGGG
*
14521253 TATTCCAGATTATTCTTTCTTACTGCTGATTTTGTGTTGAATTACCTTGCAATCTTTTTTTTTTT
1 TATTCCAGATTATTCTTTCTTACTGTTGATTTTGTGTTGAATTACCTTGCAATC--TTTTTTTTT
* * *
14521318 TGCTGGTCTTGGGTAAGTTTTGGTTTAGAGCTAATTGGTTAGTAGCTTGTGTTTTATTTAAATTA
64 TGCTGGTCTTGGGTAAGTTTTGGTTCAGAGCTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTA
* *
14521383 TATTTCTATGTTATTAGTTTTATCTGCTTAGTACTTGGAGACTCTACATTATTAATTGTATTTCT
129 TATTTCTATGTTATTAGTTTTATCT-CTTGGTACTTGGAGAC-CTACATTATTAATTGTATATCT
*
14521448 GATGTGGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCGTT
192 GATGTGGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATT
* *
14521513 TTATTTCTTCGTTCTGCATATTACTGCTGGTGAAAAGGGCCTTCCTTTT
257 TTATTTCTTCGCTCTGCATGTTACTGCTGGTGAAAAGGGCCTTCCTTTT
* * * *
14521562 TATTCCAAATTATTCTTTCTTATTGTTGATTTTTGTGTTGAATTACCTTACAATCTTTCTTTTTT
1 TATTCCAGATTATTCTTTCTTACTGTTGA-TTTTGTGTTGAATTACCTTGCAATCTTTTTTTTTT
* *
14521627 GCTGGTCTTGGGTAAGTTTTGGTTCA-AGCTAATTGGTTAGTAGCTTTTGTATTCTTTAAACTAT
65 GCTGGTCTTGGGTAAGTTTTGGTTCAGAGCTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTAT
* * *
14521691 ATTTCTATGTTATTAGTTTTATCTACTTGGTACTTTGAGA-CTATATTATTAATTGTATATCTAA
130 ATTTCTATGTTATTAGTTTTATCT-CTTGGTACTTGGAGACCTACATTATTAATTGTATATCTGA
* *
14521755 TGTAGGTTTTGTATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTT
194 TGTGGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTT
* * *
14521820 ATTTTTTCGCTCTGCATGTTATTGCTAGTGAAAAGGGCCTTCCTTTTT
259 ATTTCTTCGCTCTGCATGTTACTGCTGGTGAAAAGGGCCTTCC-TTTT
* *
14521868 TATTCCAGATTATTCTTTCTTACTGTTGATTTTGTGTTAAACTACCTTGCAAT-TTTTTTCTTTT
1 TATTCCAGATTATTCTTTCTTACTGTTGATTTTGTGTTGAATTACCTTGCAATCTTTTTT-TTTT
* *
14521932 GCTGGTCTTGGGTAAATTTTGGTTCAGAGCTAATTGATTAGTAGCTTTTGTTTTCTTTAAATTAT
65 GCTGGTCTTGGGTAAGTTTTGGTTCAGAGCTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTAT
* * * *
14521997 ATCTCTATGTTATTAGTTTTATCTGTTGGTACTTGGAGACTCTACATGATTAATTGTAAATCTGA
130 ATTTCTATGTTATTAGTTTTATCTCTTGGTACTTGGAGAC-CTACATTATTAATTGTATATCTGA
* *
14522062 TGTGGGTTTTGCATAATTTTTGCTAAGAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTT
194 TGTGGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTT
* * *
14522127 ATTTCTTTGCTATGCATGTTACTGCTGGTGAAAAGGGCTTTCCTTTT
259 ATTTCTTCGCTCTGCATGTTACTGCTGGTGAAAAGGGCCTTCCTTTT
14522174 TATTC
1 TATTC
14522179 TTTTGTAATT
Statistics
Matches: 560, Mismatches: 51, Indels: 15
0.89 0.08 0.02
Matches are distributed among these distances:
304 5 0.01
305 184 0.33
306 98 0.17
307 189 0.34
308 34 0.06
309 26 0.05
310 24 0.04
ACGTcount: A:0.22, C:0.13, G:0.16, T:0.49
Consensus pattern (305 bp):
TATTCCAGATTATTCTTTCTTACTGTTGATTTTGTGTTGAATTACCTTGCAATCTTTTTTTTTTG
CTGGTCTTGGGTAAGTTTTGGTTCAGAGCTAATTGGTTAGTAGCTTTTGTTTTCTTTAAATTATA
TTTCTATGTTATTAGTTTTATCTCTTGGTACTTGGAGACCTACATTATTAATTGTATATCTGATG
TGGGTTTTGCATAATTTCTGCTAACAACTTGGTTTTACTCAAATTTGGATCTAAAATCATTTTAT
TTCTTCGCTCTGCATGTTACTGCTGGTGAAAAGGGCCTTCCTTTT
Found at i:14522743 original size:57 final size:57
Alignment explanation
Indices: 14522631--14522743 Score: 127
Period size: 57 Copynumber: 2.0 Consensus size: 57
14522621 TTGCACTTGT
* *** *
14522631 AATTTACAGCTGCTGCCAAAATATCTTTTAATGTGTATATTTATGCTATCCAAATGC
1 AATTTACAACTGCTGCCAAAATATCTTTTAATGCACATATTTATGCTATCAAAATGC
* * * * * *
14522688 AATTTGCAACTGCTGTCATAATGTCTTTTAATGCACATATTTATGTTGTCAAAATG
1 AATTTACAACTGCTGCCAAAATATCTTTTAATGCACATATTTATGCTATCAAAATG
14522744 TGAATAATGG
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
57 45 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (57 bp):
AATTTACAACTGCTGCCAAAATATCTTTTAATGCACATATTTATGCTATCAAAATGC
Found at i:14529430 original size:21 final size:20
Alignment explanation
Indices: 14529401--14529439 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
14529391 ACGCCTACGA
14529401 AAAGATCGCTTGGATTTAAG
1 AAAGATCGCTTGGATTTAAG
14529421 AAAGAGTCGCTTGGATTTA
1 AAAGA-TCGCTTGGATTTA
14529440 TCCATGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.31
Consensus pattern (20 bp):
AAAGATCGCTTGGATTTAAG
Found at i:14529612 original size:13 final size:13
Alignment explanation
Indices: 14529594--14529636 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 13
14529584 ATTATTTATC
14529594 ATTTAAATATATA
1 ATTTAAATATATA
14529607 ATTTAAATATATAAAA
1 ATTTAAATATAT---A
14529623 ATTTAAATATATA
1 ATTTAAATATATA
14529636 A
1 A
14529637 ATAATATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
13 14 0.52
16 13 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (13 bp):
ATTTAAATATATA
Found at i:14529627 original size:16 final size:16
Alignment explanation
Indices: 14529594--14529637 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
14529584 ATTATTTATC
14529594 ATTTAAATATAT---A
1 ATTTAAATATATAAAA
14529607 ATTTAAATATATAAAA
1 ATTTAAATATATAAAA
14529623 ATTTAAATATATAAA
1 ATTTAAATATATAAA
14529638 TAATATTAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.43
16 16 0.57
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATTTAAATATATAAAA
Found at i:14529637 original size:8 final size:8
Alignment explanation
Indices: 14529597--14529654 Score: 50
Period size: 8 Copynumber: 7.4 Consensus size: 8
14529587 ATTTATCATT
14529597 TAAATATA
1 TAAATATA
14529605 T-AAT-T-
1 TAAATATA
14529610 TAAATATA
1 TAAATATA
* *
14529618 TAAAAATT
1 TAAATATA
14529626 TAAATATA
1 TAAATATA
14529634 TAAATAATA
1 TAAAT-ATA
*
14529643 TTAATAATA
1 TAAAT-ATA
14529652 TAA
1 TAA
14529655 TAATATAGAA
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
5 1 0.03
6 4 0.10
7 4 0.10
8 18 0.45
9 13 0.32
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (8 bp):
TAAATATA
Found at i:14529660 original size:17 final size:16
Alignment explanation
Indices: 14529600--14529658 Score: 68
Period size: 16 Copynumber: 3.6 Consensus size: 16
14529590 TATCATTTAA
14529600 ATAT-ATAATTTAAAT
1 ATATAATAATTTAAAT
*
14529615 ATATAAAAATTTAAAT
1 ATATAATAATTTAAAT
14529631 ATATAAATAATATT-AAT
1 ATAT-AATAAT-TTAAAT
14529648 AATATAATAAT
1 -ATATAATAAT
14529659 ATAGAAAGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
15 4 0.11
16 14 0.37
17 14 0.37
18 6 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
ATATAATAATTTAAAT
Found at i:14529717 original size:23 final size:25
Alignment explanation
Indices: 14529670--14529719 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
14529660 TAGAAAGAAA
*
14529670 ATATGCATTATATATAAATTCAATT
1 ATATGCATTATATATAAACTCAATT
*
14529695 ATATGCGTTATATAT-AACT-AATT
1 ATATGCATTATATATAAACTCAATT
14529718 AT
1 AT
14529720 GTACTTATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 6 0.26
24 3 0.13
25 14 0.61
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (25 bp):
ATATGCATTATATATAAACTCAATT
Found at i:14531406 original size:13 final size:13
Alignment explanation
Indices: 14531388--14531421 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
14531378 ACGTCCTTGG
14531388 ATTAAATTATTAA
1 ATTAAATTATTAA
14531401 ATTAAAATTATTAA
1 ATT-AAATTATTAA
14531415 A-TAAATT
1 ATTAAATT
14531422 GAAATTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
12 5 0.25
13 4 0.20
14 11 0.55
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATTAAATTATTAA
Found at i:14537853 original size:16 final size:17
Alignment explanation
Indices: 14537821--14537857 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
14537811 GTTTAAAAAT
14537821 TTTAATTAATCAAATTTA
1 TTTAATTAA-CAAATTTA
14537839 TTTAATTAA-AAATTTA
1 TTTAATTAACAAATTTA
14537855 TTT
1 TTT
14537858 TAATCCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 10 0.53
18 9 0.47
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTAATTAACAAATTTA
Found at i:14539467 original size:27 final size:28
Alignment explanation
Indices: 14539419--14539474 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
14539409 GTTGTCTCAA
14539419 AGGTCTTGTCTAAATAGATTGTTTAAAC
1 AGGTCTTGTCTAAATAGATTGTTTAAAC
* * *
14539447 AGGT-TTGTCTAAATGGGTTGTTTGAAC
1 AGGTCTTGTCTAAATAGATTGTTTAAAC
14539474 A
1 A
14539475 AGAGTTGAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 21 0.84
28 4 0.16
ACGTcount: A:0.29, C:0.09, G:0.23, T:0.39
Consensus pattern (28 bp):
AGGTCTTGTCTAAATAGATTGTTTAAAC
Found at i:14542172 original size:16 final size:16
Alignment explanation
Indices: 14542151--14542206 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
14542141 AATGAAAAGG
14542151 TTGAAATGGATATCAA
1 TTGAAATGGATATCAA
*
14542167 TTGAAAT-GATTTCAA
1 TTGAAATGGATATCAA
* *
14542182 ATGAAAAGGATATC-A
1 TTGAAATGGATATCAA
*
14542197 TTGGAATGGA
1 TTGAAATGGA
14542207 CTATTATGTA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
15 20 0.62
16 12 0.38
ACGTcount: A:0.43, C:0.05, G:0.21, T:0.30
Consensus pattern (16 bp):
TTGAAATGGATATCAA
Found at i:14545162 original size:24 final size:24
Alignment explanation
Indices: 14545116--14545162 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
14545106 ACCAATGGGC
**
14545116 TTAAGAACCATCCTCCTTGATAAA
1 TTAAGAACCATCCTCCTACATAAA
**
14545140 TTAAGAACCATTTTCCTACATAA
1 TTAAGAACCATCCTCCTACATAA
14545163 CCCTTTGGTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (24 bp):
TTAAGAACCATCCTCCTACATAAA
Found at i:14552805 original size:284 final size:284
Alignment explanation
Indices: 14552295--14552862 Score: 1136
Period size: 284 Copynumber: 2.0 Consensus size: 284
14552285 CACGCATATG
14552295 AAATAAGCGTGGAAAGTAGAGAAATGCAAATGAAAATAAAGAAATTATGAAGAGTTAAAGTTATA
1 AAATAAGCGTGGAAAGTAGAGAAATGCAAATGAAAATAAAGAAATTATGAAGAGTTAAAGTTATA
14552360 TAAAATCCTACTAAGCTTGGGATAATATGTTTAAGTGATACTGTGGATTTATTCACCTTGTGAGT
66 TAAAATCCTACTAAGCTTGGGATAATATGTTTAAGTGATACTGTGGATTTATTCACCTTGTGAGT
14552425 TGATGAATATAGCTTCATGAGTATTGTGGTATTAATATTGGATTATTCTTGATATGTATAGATTT
131 TGATGAATATAGCTTCATGAGTATTGTGGTATTAATATTGGATTATTCTTGATATGTATAGATTT
14552490 CATATTTGGAATGAACTAAAATGATTAAAGTTTATACGAGCTTACTAAGCATTCATTGCTTATGT
196 CATATTTGGAATGAACTAAAATGATTAAAGTTTATACGAGCTTACTAAGCATTCATTGCTTATGT
14552555 AGTTGTTTTCCTTTACTTTCTAGA
261 AGTTGTTTTCCTTTACTTTCTAGA
14552579 AAATAAGCGTGGAAAGTAGAGAAATGCAAATGAAAATAAAGAAATTATGAAGAGTTAAAGTTATA
1 AAATAAGCGTGGAAAGTAGAGAAATGCAAATGAAAATAAAGAAATTATGAAGAGTTAAAGTTATA
14552644 TAAAATCCTACTAAGCTTGGGATAATATGTTTAAGTGATACTGTGGATTTATTCACCTTGTGAGT
66 TAAAATCCTACTAAGCTTGGGATAATATGTTTAAGTGATACTGTGGATTTATTCACCTTGTGAGT
14552709 TGATGAATATAGCTTCATGAGTATTGTGGTATTAATATTGGATTATTCTTGATATGTATAGATTT
131 TGATGAATATAGCTTCATGAGTATTGTGGTATTAATATTGGATTATTCTTGATATGTATAGATTT
14552774 CATATTTGGAATGAACTAAAATGATTAAAGTTTATACGAGCTTACTAAGCATTCATTGCTTATGT
196 CATATTTGGAATGAACTAAAATGATTAAAGTTTATACGAGCTTACTAAGCATTCATTGCTTATGT
14552839 AGTTGTTTTCCTTTACTTTCTAGA
261 AGTTGTTTTCCTTTACTTTCTAGA
14552863 TTATCGGAAG
Statistics
Matches: 284, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
284 284 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (284 bp):
AAATAAGCGTGGAAAGTAGAGAAATGCAAATGAAAATAAAGAAATTATGAAGAGTTAAAGTTATA
TAAAATCCTACTAAGCTTGGGATAATATGTTTAAGTGATACTGTGGATTTATTCACCTTGTGAGT
TGATGAATATAGCTTCATGAGTATTGTGGTATTAATATTGGATTATTCTTGATATGTATAGATTT
CATATTTGGAATGAACTAAAATGATTAAAGTTTATACGAGCTTACTAAGCATTCATTGCTTATGT
AGTTGTTTTCCTTTACTTTCTAGA
Found at i:14566547 original size:29 final size:30
Alignment explanation
Indices: 14566504--14566584 Score: 83
Period size: 29 Copynumber: 2.7 Consensus size: 30
14566494 AAATTGAATC
* *
14566504 AAATCAAATTTTCATGTATAAAATTGCACA-
1 AAATCAAA-ATTCATGTATAAAATTACACAT
* * *
14566534 AAATCAAAGTTCATTTATAACATTACACATT
1 AAATCAAAATTCATGTATAAAATTACACA-T
*
14566565 AAATTAAAATTCATGTATAA
1 AAATCAAAATTCATGTATAA
14566585 TTTTAATATT
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 17 0.40
30 8 0.19
31 17 0.40
ACGTcount: A:0.48, C:0.12, G:0.05, T:0.35
Consensus pattern (30 bp):
AAATCAAAATTCATGTATAAAATTACACAT
Found at i:14566850 original size:13 final size:13
Alignment explanation
Indices: 14566832--14566859 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14566822 AGTTCAACTC
14566832 ACTTTTACATAAA
1 ACTTTTACATAAA
14566845 ACTTTTACATAAA
1 ACTTTTACATAAA
14566858 AC
1 AC
14566860 ATGTGATGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.46, C:0.18, G:0.00, T:0.36
Consensus pattern (13 bp):
ACTTTTACATAAA
Found at i:14581555 original size:59 final size:58
Alignment explanation
Indices: 14581424--14581560 Score: 157
Period size: 59 Copynumber: 2.3 Consensus size: 58
14581414 TATCAGTAAT
* * *
14581424 CATTGACTAATGAAAAGGGATGGTGATGACCATCGAATATGAAAAGGGATAGCTTCAGC
1 CATTGAAT-ATGAAAAGGGATGGTGACGAACATCGAATATGAAAAGGGATAGCTTCAGC
* * * * * * * *
14581483 TATCGATTATGAAAAGGGTTGGTGACGAACATCGATTAATGAAAAGGGATGGTTTCGGC
1 CATTGAATATGAAAAGGGATGGTGACGAACATCGAAT-ATGAAAAGGGATAGCTTCAGC
14581542 CATTGAATATGAAAAGGGA
1 CATTGAATATGAAAAGGGA
14581561 CAGTTACGAC
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
58 25 0.40
59 38 0.60
ACGTcount: A:0.36, C:0.11, G:0.28, T:0.24
Consensus pattern (58 bp):
CATTGAATATGAAAAGGGATGGTGACGAACATCGAATATGAAAAGGGATAGCTTCAGC
Found at i:14581559 original size:29 final size:29
Alignment explanation
Indices: 14581433--14581560 Score: 107
Period size: 29 Copynumber: 4.4 Consensus size: 29
14581423 TCATTGACTA
*
14581433 ATGAAAAGGGATGGTGAT-GACCATCGAAT
1 ATGAAAAGGGATGGT-TTCGACCATCGAAT
* * * *
14581462 ATGAAAAGGGATAGCTTC-AGCTATCGATT
1 ATGAAAAGGGATGGTTTCGA-CCATCGAAT
* ** * *
14581491 ATGAAAAGGGTTGGTGACGAACATCGATT
1 ATGAAAAGGGATGGTTTCGACCATCGAAT
* *
14581520 AATGAAAAGGGATGGTTTCGGCCATTGAAT
1 -ATGAAAAGGGATGGTTTCGACCATCGAAT
14581550 ATGAAAAGGGA
1 ATGAAAAGGGA
14581561 CAGTTACGAC
Statistics
Matches: 76, Mismatches: 19, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
28 2 0.03
29 51 0.67
30 23 0.30
ACGTcount: A:0.37, C:0.10, G:0.30, T:0.23
Consensus pattern (29 bp):
ATGAAAAGGGATGGTTTCGACCATCGAAT
Found at i:14586040 original size:16 final size:15
Alignment explanation
Indices: 14586013--14586056 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
14586003 TTATCTTAAA
14586013 ATATGAATATGTGTAT
1 ATATG-ATATGTGTAT
* *
14586029 ATTGTGATATGTGTTT
1 A-TATGATATGTGTAT
14586045 ATATGATATGTG
1 ATATGATATGTG
14586057 ACTATTATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
15 10 0.42
16 11 0.46
17 3 0.12
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.48
Consensus pattern (15 bp):
ATATGATATGTGTAT
Found at i:14593111 original size:20 final size:20
Alignment explanation
Indices: 14593059--14593121 Score: 74
Period size: 20 Copynumber: 3.2 Consensus size: 20
14593049 TACAAAGTAC
*
14593059 GCCACAAAGGC-AATATAAT
1 GCCACAAAGGCTAATAAAAT
* * *
14593078 GCCACAACGACTAACAAAAT
1 GCCACAAAGGCTAATAAAAT
*
14593098 GCCACAAAGGCTAATAGAAT
1 GCCACAAAGGCTAATAAAAT
14593118 GCCA
1 GCCA
14593122 TGAAGGCCCA
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
19 9 0.26
20 26 0.74
ACGTcount: A:0.46, C:0.25, G:0.16, T:0.13
Consensus pattern (20 bp):
GCCACAAAGGCTAATAAAAT
Found at i:14596146 original size:86 final size:86
Alignment explanation
Indices: 14596001--14596166 Score: 314
Period size: 86 Copynumber: 1.9 Consensus size: 86
14595991 GAATTCACAA
14596001 ACATATTTAGCATAGGTAAAATAACACTTACACTTGGAATTTAGAGGAGGGGTTTAGGATACCTC
1 ACATATTTAGCATAGGTAAAATAACACTTACACTTGGAATTTAGAGGAGGGGTTTAGGATACCTC
14596066 TAAATTCCAAAAATATTTATC
66 TAAATTCCAAAAATATTTATC
*
14596087 ACATATTTAGCATAGGTAAAATAACACTTCCACTTGGAATTTAGAGGAGGGGTTTAGGATACCTC
1 ACATATTTAGCATAGGTAAAATAACACTTACACTTGGAATTTAGAGGAGGGGTTTAGGATACCTC
*
14596152 TAAATTCCCAAAATA
66 TAAATTCCAAAAATA
14596167 CACAACGAAT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
86 78 1.00
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (86 bp):
ACATATTTAGCATAGGTAAAATAACACTTACACTTGGAATTTAGAGGAGGGGTTTAGGATACCTC
TAAATTCCAAAAATATTTATC
Found at i:14604631 original size:18 final size:18
Alignment explanation
Indices: 14604610--14604645 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14604600 ACAAAATTTC
*
14604610 GCCCTTGAAATTTTCTAA
1 GCCCTGGAAATTTTCTAA
14604628 GCCCTGGAAATTTTCTAA
1 GCCCTGGAAATTTTCTAA
14604646 CTTAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.36
Consensus pattern (18 bp):
GCCCTGGAAATTTTCTAA
Found at i:14607013 original size:21 final size:21
Alignment explanation
Indices: 14606951--14607015 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
14606941 TGCATGCCAA
*
14606951 TAGGGTTTGAACGTGCGCTTA
1 TAGGGTTTGAACGTGCGCTTG
*
14606972 TAGGGTTTGAACGTGTGCTTG
1 TAGGGTTTGAACGTGCGCTTG
*
14606993 TAGGGTTTGAACGTGCACTTG
1 TAGGGTTTGAACGTGCGCTTG
14607014 TA
1 TA
14607016 AGAGTTTTCA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.18, C:0.12, G:0.34, T:0.35
Consensus pattern (21 bp):
TAGGGTTTGAACGTGCGCTTG
Found at i:14607138 original size:20 final size:20
Alignment explanation
Indices: 14607019--14607137 Score: 157
Period size: 20 Copynumber: 6.0 Consensus size: 20
14607009 ACTTGTAAGA
* * *
14607019 GTTTTCACTTCAGTGCCTTC
1 GTTTGCACTTCGGTGCCTCC
* * *
14607039 ATTTGCTCTTCAGTGCCTCC
1 GTTTGCACTTCGGTGCCTCC
14607059 GTTTGCACTTCGGTGCCTCC
1 GTTTGCACTTCGGTGCCTCC
14607079 GTTTGCACTTCGGTGCCTCC
1 GTTTGCACTTCGGTGCCTCC
*
14607099 GTTTGCACTTCGGTGCCTCT
1 GTTTGCACTTCGGTGCCTCC
* *
14607119 ATTCGCACTTCGGTGCCTC
1 GTTTGCACTTCGGTGCCTC
14607138 TGTTACACTT
Statistics
Matches: 89, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 89 1.00
ACGTcount: A:0.08, C:0.34, G:0.21, T:0.38
Consensus pattern (20 bp):
GTTTGCACTTCGGTGCCTCC
Found at i:14614110 original size:31 final size:31
Alignment explanation
Indices: 14614075--14614141 Score: 107
Period size: 31 Copynumber: 2.2 Consensus size: 31
14614065 ATAATTAATC
*
14614075 AAAAGGAATGGTTTGAAATAGAGAGTTTAAG
1 AAAAGCAATGGTTTGAAATAGAGAGTTTAAG
**
14614106 AAAAGCCTTGGTTTGAAATAGAGAGTTTAAG
1 AAAAGCAATGGTTTGAAATAGAGAGTTTAAG
14614137 AAAAG
1 AAAAG
14614142 TTTATTGATA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.45, C:0.03, G:0.27, T:0.25
Consensus pattern (31 bp):
AAAAGCAATGGTTTGAAATAGAGAGTTTAAG
Found at i:14623674 original size:46 final size:46
Alignment explanation
Indices: 14623607--14623697 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
14623597 AACTACATGT
14623607 TAGTCTTAATGCATTATTGTTGTCGTATCCAACAATAATACTTGAC
1 TAGTCTTAATGCATTATTGTTGTCGTATCCAACAATAATACTTGAC
14623653 TAGTCTTAATGCATTATTGTTGTCGTATCCAACAATAATACTTGA
1 TAGTCTTAATGCATTATTGTTGTCGTATCCAACAATAATACTTGA
14623698 ATAAGGACCT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.31, C:0.16, G:0.13, T:0.40
Consensus pattern (46 bp):
TAGTCTTAATGCATTATTGTTGTCGTATCCAACAATAATACTTGAC
Found at i:14634844 original size:22 final size:22
Alignment explanation
Indices: 14634813--14634855 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14634803 GTGTTATGAA
* *
14634813 TGGTAATTTATTTGCAAATCAG
1 TGGTAATTTATATACAAATCAG
*
14634835 TGGTAGTTTATATACAAATCA
1 TGGTAATTTATATACAAATCA
14634856 ATGACATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (22 bp):
TGGTAATTTATATACAAATCAG
Found at i:14638120 original size:15 final size:15
Alignment explanation
Indices: 14638072--14638112 Score: 82
Period size: 15 Copynumber: 2.7 Consensus size: 15
14638062 CTAACCCTAT
14638072 TCCTACACCTGCCAA
1 TCCTACACCTGCCAA
14638087 TCCTACACCTGCCAA
1 TCCTACACCTGCCAA
14638102 TCCTACACCTG
1 TCCTACACCTG
14638113 TTAGTCCTCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.24, C:0.46, G:0.07, T:0.22
Consensus pattern (15 bp):
TCCTACACCTGCCAA
Found at i:14642283 original size:19 final size:21
Alignment explanation
Indices: 14642248--14642286 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
14642238 TCTAGGGTTT
14642248 TTATAATAATAAAATAAAATA
1 TTATAATAATAAAATAAAATA
14642269 TTATAA-AAT-AAATAAAAT
1 TTATAATAATAAAATAAAAT
14642287 TCAAGAGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 3 0.17
21 6 0.33
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (21 bp):
TTATAATAATAAAATAAAATA
Found at i:14655371 original size:16 final size:16
Alignment explanation
Indices: 14655330--14655374 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 16
14655320 TGAATTACTG
*
14655330 ATTACAACTTTATTCC
1 ATTACAACTCTATTCC
*
14655346 ATTA-AACTCTATTCT
1 ATTACAACTCTATTCC
14655361 ATTACAACTCTATT
1 ATTACAACTCTATT
14655375 TCATAATAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.33, C:0.22, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:14663173 original size:20 final size:20
Alignment explanation
Indices: 14663148--14663189 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
14663138 AGGTCATTTG
14663148 TTTTGC-TCTTCCTTTTCTGT
1 TTTTGCATCTTCC-TTTCTGT
*
14663168 TTTTGCATCTTGCTTTCTGT
1 TTTTGCATCTTCCTTTCTGT
14663188 TT
1 TT
14663190 GAGCAAATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.02, C:0.21, G:0.12, T:0.64
Consensus pattern (20 bp):
TTTTGCATCTTCCTTTCTGT
Found at i:14670834 original size:23 final size:23
Alignment explanation
Indices: 14670807--14670879 Score: 78
Period size: 23 Copynumber: 3.2 Consensus size: 23
14670797 TAAAAGAGAA
*
14670807 ACAAATTCCTAAAATTGTGGAAG
1 ACAAATACCTAAAATTGTGGAAG
* *
14670830 ACAAATACCTACAATT-TAGCCAA-
1 ACAAATACCTAAAATTGT-G-GAAG
*
14670853 ACAAATCCCTAAAATTGTGGAAG
1 ACAAATACCTAAAATTGTGGAAG
14670876 ACAA
1 ACAA
14670880 CTTGACTTGA
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
22 3 0.08
23 34 0.85
24 3 0.08
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.22
Consensus pattern (23 bp):
ACAAATACCTAAAATTGTGGAAG
Found at i:14672636 original size:24 final size:25
Alignment explanation
Indices: 14672564--14672636 Score: 103
Period size: 25 Copynumber: 3.0 Consensus size: 25
14672554 TTGGCCCTCT
*
14672564 CGAGCTTCCCGTTATATGGTTCTTA
1 CGAGCTTCCCGTTATATAGTTCTTA
** *
14672589 CGAGCTTTTCGTTATATAGTTCTTG
1 CGAGCTTCCCGTTATATAGTTCTTA
14672614 CGAGCTTCCCGTTA-ATAGTTCTT
1 CGAGCTTCCCGTTATATAGTTCTT
14672637 CGAAGCATCA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 9 0.21
25 33 0.79
ACGTcount: A:0.16, C:0.22, G:0.19, T:0.42
Consensus pattern (25 bp):
CGAGCTTCCCGTTATATAGTTCTTA
Found at i:14672801 original size:25 final size:25
Alignment explanation
Indices: 14672773--14672822 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
14672763 CTCGCTTGAA
14672773 CTTCCCGA-TATATGGCTATTTGGAG
1 CTTCCCGATTA-ATGGCTATTTGGAG
*
14672798 CTTCCCGATTAATGGCTCTTTGGAG
1 CTTCCCGATTAATGGCTATTTGGAG
14672823 ATACCTGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 21 0.91
26 2 0.09
ACGTcount: A:0.18, C:0.22, G:0.24, T:0.36
Consensus pattern (25 bp):
CTTCCCGATTAATGGCTATTTGGAG
Found at i:14678180 original size:13 final size:13
Alignment explanation
Indices: 14678162--14678192 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
14678152 TGTATAAATG
14678162 GAAATGGATATAT
1 GAAATGGATATAT
*
14678175 GAAATGGCTATAT
1 GAAATGGATATAT
14678188 GAAAT
1 GAAAT
14678193 TAGTCATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.45, C:0.03, G:0.23, T:0.29
Consensus pattern (13 bp):
GAAATGGATATAT
Found at i:14680002 original size:13 final size:13
Alignment explanation
Indices: 14679984--14680008 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14679974 AAATGAGTAT
14679984 TTTCTTCTTCTTC
1 TTTCTTCTTCTTC
14679997 TTTCTTCTTCTT
1 TTTCTTCTTCTT
14680009 TTTTTTACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTCTTCTTCTTC
Found at i:14686647 original size:78 final size:78
Alignment explanation
Indices: 14686518--14686671 Score: 290
Period size: 78 Copynumber: 2.0 Consensus size: 78
14686508 GGACAGTCTA
14686518 TCTTTCTCTACATGGGTTCTCATCCTTCTCAGCTGGAACCAGCATAGGAAGATATGAATTTGTGG
1 TCTTTCTCTACATGGGTTCTCATCCTTCTCAGCTGGAACCAGCATAGGAAGATATGAATTTGTGG
14686583 TATCTAGTTCATC
66 TATCTAGTTCATC
* *
14686596 TCTTTCTCTACGTGGGTTCTCATCCTTCTCAGCTGGAACCAGCATGGGAAGATATGAATTTGTGG
1 TCTTTCTCTACATGGGTTCTCATCCTTCTCAGCTGGAACCAGCATAGGAAGATATGAATTTGTGG
14686661 TATCTAGTTCA
66 TATCTAGTTCA
14686672 GAGACAAACC
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 74 1.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (78 bp):
TCTTTCTCTACATGGGTTCTCATCCTTCTCAGCTGGAACCAGCATAGGAAGATATGAATTTGTGG
TATCTAGTTCATC
Found at i:14689546 original size:20 final size:20
Alignment explanation
Indices: 14689517--14689556 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14689507 TTATAAAGTT
*
14689517 AATAATAAAATACCTTACAA
1 AATAACAAAATACCTTACAA
*
14689537 AATAACAAAATATCTTACAA
1 AATAACAAAATACCTTACAA
14689557 CTCATCTAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.60, C:0.15, G:0.00, T:0.25
Consensus pattern (20 bp):
AATAACAAAATACCTTACAA
Found at i:14692353 original size:29 final size:29
Alignment explanation
Indices: 14692306--14692374 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
14692296 AGTCTCGTAA
*
14692306 CAAGTGGTATCAGAGCTGTTGGTTCGAAC
1 CAAGTGGTATCAGAACTGTTGGTTCGAAC
*
14692335 CAAGTGGTATTC-GAACTGTTGGTTTGAAC
1 CAAGTGGTA-TCAGAACTGTTGGTTCGAAC
*
14692364 CAAGTGATATC
1 CAAGTGGTATC
14692375 TAATATATTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.06
29 32 0.89
30 2 0.06
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (29 bp):
CAAGTGGTATCAGAACTGTTGGTTCGAAC
Found at i:14696177 original size:3 final size:3
Alignment explanation
Indices: 14696169--14696198 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
14696159 ATTAGTACTG
14696169 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
14696199 GTGTTTCTGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:14701207 original size:64 final size:64
Alignment explanation
Indices: 14701105--14701232 Score: 247
Period size: 64 Copynumber: 2.0 Consensus size: 64
14701095 GATTTTTAGA
14701105 TAGATTTTATTTCTTTCCTTTTACTCACTCTTAAGGCCCTTTTGGATGGGTAGTGCATTTACCT
1 TAGATTTTATTTCTTTCCTTTTACTCACTCTTAAGGCCCTTTTGGATGGGTAGTGCATTTACCT
*
14701169 TAGATTTTATTTCTTTCCTTTTACTCACTCTTAGGGCCCTTTTGGATGGGTAGTGCATTTACCT
1 TAGATTTTATTTCTTTCCTTTTACTCACTCTTAAGGCCCTTTTGGATGGGTAGTGCATTTACCT
14701233 GTGGTTAATG
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 63 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.47
Consensus pattern (64 bp):
TAGATTTTATTTCTTTCCTTTTACTCACTCTTAAGGCCCTTTTGGATGGGTAGTGCATTTACCT
Found at i:14708613 original size:20 final size:21
Alignment explanation
Indices: 14708565--14708608 Score: 61
Period size: 24 Copynumber: 2.0 Consensus size: 21
14708555 TGGATACAAG
14708565 AAAGAATGTCTTTCTTCATATAAA
1 AAAGAATGTCTTTCTTC--A-AAA
14708589 AAAGAATGTCTTTCTTCAAA
1 AAAGAATGTCTTTCTTCAAA
14708609 GAAGAGGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 2 0.10
22 1 0.05
24 17 0.85
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (21 bp):
AAAGAATGTCTTTCTTCAAAA
Found at i:14721384 original size:24 final size:25
Alignment explanation
Indices: 14721351--14721461 Score: 91
Period size: 25 Copynumber: 4.5 Consensus size: 25
14721341 TACATGTATA
* *
14721351 CTCATACGAGCTGTA-AATAGTAAG
1 CTCATCCGAGCTGTATAATAGGAAG
* *
14721375 CTCCTCCGAGCTGTATAATGGGAAG
1 CTCATCCGAGCTGTATAATAGGAAG
* * **
14721400 CTCATGCGAGCTGAATAACGGGAAG
1 CTCATCCGAGCTGTATAATAGGAAG
* **
14721425 CTCATGCGAGCTG-AGTAACGGGAAG
1 CTCATCCGAGCTGTA-TAATAGGAAG
*
14721450 CTCATGCGAGCT
1 CTCATCCGAGCT
14721462 ATGGTGTGTC
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
24 14 0.18
25 63 0.82
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.21
Consensus pattern (25 bp):
CTCATCCGAGCTGTATAATAGGAAG
Found at i:14721409 original size:25 final size:25
Alignment explanation
Indices: 14721372--14721461 Score: 128
Period size: 25 Copynumber: 3.6 Consensus size: 25
14721362 TGTAAATAGT
* * *
14721372 AAGCTCCTCCGAGCTGTATAATGGG
1 AAGCTCATGCGAGCTGTATAACGGG
*
14721397 AAGCTCATGCGAGCTGAATAACGGG
1 AAGCTCATGCGAGCTGTATAACGGG
14721422 AAGCTCATGCGAGCTG-AGTAACGGG
1 AAGCTCATGCGAGCTGTA-TAACGGG
14721447 AAGCTCATGCGAGCT
1 AAGCTCATGCGAGCT
14721462 ATGGTGTGTC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
24 1 0.02
25 59 0.98
ACGTcount: A:0.28, C:0.22, G:0.31, T:0.19
Consensus pattern (25 bp):
AAGCTCATGCGAGCTGTATAACGGG
Found at i:14721798 original size:16 final size:17
Alignment explanation
Indices: 14721772--14721805 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
14721762 ATGAATTTAA
14721772 CTCATTTCAATATAATT
1 CTCATTTCAATATAATT
*
14721789 CTCA-TTCAATTTAATT
1 CTCATTTCAATATAATT
14721805 C
1 C
14721806 AACATGGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (17 bp):
CTCATTTCAATATAATT
Found at i:14722572 original size:13 final size:13
Alignment explanation
Indices: 14722554--14722589 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
14722544 GTAAACGGTA
14722554 AAATTTCTTA-ACG
1 AAATTT-TTATACG
14722567 AAATTTTTATACG
1 AAATTTTTATACG
14722580 AAATTTTTAT
1 AAATTTTTAT
14722590 CATACTGTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 3 0.14
13 19 0.86
ACGTcount: A:0.39, C:0.08, G:0.06, T:0.47
Consensus pattern (13 bp):
AAATTTTTATACG
Found at i:14723432 original size:224 final size:226
Alignment explanation
Indices: 14723033--14723486 Score: 774
Period size: 224 Copynumber: 2.0 Consensus size: 226
14723023 TTCATATATG
*
14723033 TTCTTTTTGAGAAGACAATGTTTAAAACTATATATAGTCTCTCTCCAACCTATAAATAAGAGGAT
1 TTCTTTTTGAGAAGACAATGTTTAAAACTATACATAGTCTCTCTCCAACCTATAAATAAGAGGAT
14723098 AATGAGATTCAATACACTCGAACCCATGTCCTCCTATATTGCTATAAAATTAAATAAAATAAATT
66 AATGAGATTCAATACACTCGAACCCATGTCCTCCTATATTGCTATAAAATTAAATAAAATAAATT
* **
14723163 AAGATAAACTACCTAGTTGGTTACCCAACTTTTTAAGTGCTTTCATTTTAATCCCTCAAATAAAA
131 AAGATAAACTACCTAGTTGATTACCCAACTTTTTAAGCCCTTTCATTTTAATCCCTCAAATAAAA
14723228 AAAAACTTGTAATTTAGTCACTACCGTTAGAAAA
196 AAAAA---GTAATTTAGTCACTACCGTTAGAAAA
* *
14723262 TTCTTTTTGAGAAGACAATGTTTAAAACTATACATAGTC-C-CT-C-TCC-ATAAATAAGATGAT
1 TTCTTTTTGAGAAGACAATGTTTAAAACTATACATAGTCTCTCTCCAACCTATAAATAAGAGGAT
*
14723322 AATGAGATTCAGTACACTCGAACCCATGTCCTCCTATATTGCTATAAAATTAAATAAAATAAATT
66 AATGAGATTCAATACACTCGAACCCATGTCCTCCTATATTGCTATAAAATTAAATAAAATAAATT
*
14723387 AAGATAAACTACCTAGTTGATTACCCAACTTTTTAAGCCCTTTCATTTTGATCCCTCAAATAAAA
131 AAGATAAACTACCTAGTTGATTACCCAACTTTTTAAGCCCTTTCATTTTAATCCCTCAAATAAAA
14723452 AAAAAGTAATTTAGTCACTACCGTTAGAAAA
196 AAAAAGTAATTTAGTCACTACCGTTAGAAAA
14723483 TTCT
1 TTCT
14723487 CACTAACCTA
Statistics
Matches: 217, Mismatches: 8, Indels: 8
0.93 0.03 0.03
Matches are distributed among these distances:
221 30 0.14
224 143 0.66
225 2 0.01
226 1 0.00
227 2 0.01
228 1 0.00
229 38 0.18
ACGTcount: A:0.39, C:0.18, G:0.10, T:0.33
Consensus pattern (226 bp):
TTCTTTTTGAGAAGACAATGTTTAAAACTATACATAGTCTCTCTCCAACCTATAAATAAGAGGAT
AATGAGATTCAATACACTCGAACCCATGTCCTCCTATATTGCTATAAAATTAAATAAAATAAATT
AAGATAAACTACCTAGTTGATTACCCAACTTTTTAAGCCCTTTCATTTTAATCCCTCAAATAAAA
AAAAAGTAATTTAGTCACTACCGTTAGAAAA
Found at i:14725792 original size:23 final size:23
Alignment explanation
Indices: 14725762--14725807 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
14725752 GCTTATCATT
14725762 CTATTTAAGAGTTCAAGAATGGA
1 CTATTTAAGAGTTCAAGAATGGA
*
14725785 CTATTTAAGAGTTGAAGAATGGA
1 CTATTTAAGAGTTCAAGAATGGA
14725808 TACGAGTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.39, C:0.07, G:0.24, T:0.30
Consensus pattern (23 bp):
CTATTTAAGAGTTCAAGAATGGA
Found at i:14730059 original size:22 final size:22
Alignment explanation
Indices: 14730034--14730099 Score: 84
Period size: 22 Copynumber: 3.1 Consensus size: 22
14730024 TAAGTGACTT
14730034 AATATGTAGAAAAGATCAAATA
1 AATATGTAGAAAAGATCAAATA
**
14730056 AATATGTTTAAAAGATCAAAT-
1 AATATGTAGAAAAGATCAAATA
*
14730077 --TATGTAGAAAAGATCAGATA
1 AATATGTAGAAAAGATCAAATA
14730097 AAT
1 AAT
14730100 TACTGTTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
19 16 0.44
22 20 0.56
ACGTcount: A:0.55, C:0.05, G:0.14, T:0.27
Consensus pattern (22 bp):
AATATGTAGAAAAGATCAAATA
Found at i:14743869 original size:41 final size:41
Alignment explanation
Indices: 14743822--14743946 Score: 198
Period size: 41 Copynumber: 3.0 Consensus size: 41
14743812 ACTTGGTTAC
* *
14743822 TATTTTAACAATAGTTATGATGGTTTAAATTGTATCACAGG
1 TATTTTAACAATAGTTGTGATGGTTTAAATTGTATCACAAG
14743863 CT-TTTTAACAATAGTTGTGATGGTTTAAATTGTATCACAAG
1 -TATTTTAACAATAGTTGTGATGGTTTAAATTGTATCACAAG
* *
14743904 TATTTTAAGAATAGTTGTGATGGTTTAAATTGTATCGCAAG
1 TATTTTAACAATAGTTGTGATGGTTTAAATTGTATCACAAG
14743945 TA
1 TA
14743947 AATTGTCACT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
40 1 0.01
41 76 0.97
42 1 0.01
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (41 bp):
TATTTTAACAATAGTTGTGATGGTTTAAATTGTATCACAAG
Found at i:14755170 original size:523 final size:521
Alignment explanation
Indices: 14754076--14755655 Score: 2057
Period size: 523 Copynumber: 3.0 Consensus size: 521
14754066 CAAATTACAG
* * * * * * *
14754076 ATTATTCTGGTTGAATTCATCTGTACTGCTTGGATTTTTACTTGGTACTTCAAATTTGTTGTTTT
1 ATTATTCTAGCTGAATTCAT-TGTACTGCTTGGATTTTTA-TTGGTTCTTCGAATCTGTCGTTCT
* * * * * * * *
14754141 GGTTGAATAAATAGTTTTTCTTTTAATCAAAATTTTATCTTGTTTCCTTCTTCC-TGTATTTTCT
64 AGTAGAGTAAGTAGTTTTTCTTTCAATC-AGATCTTATCTCGTTTCCTTCTTCCTTG-ATTTTCT
* * * *
14754205 GATTT-GTCTAAATGTTATTGGTGGCATAG-CTGAATTTTCTATACTAACTTTTGAGTGTTATTT
127 GCTTTGGTC-AAATGTTACTGGTGGCATAGTC-AAATATTCTATACTAACTTTTGAGTGTTATTT
* *
14754268 TGATTGAAGGACCTAATCCGAACGTCATGGATCAACAGTGACAT-TGAGACTCATTCTAGTCTTT
190 TGATTGAAGGACCTAATCCGAACGTCATGGATCAACAGTGACATCT-AAACTCATT-TTGTCTTT
* * * *
14754332 GTTCTATATCGAAATATAGTAAGTGATTAAAAATTGAATCCGATTTGACACTGTTAGTCCTTGTT
253 GTTATATATCGAAATAGAGTAAGTGATCAAAAATTGAATCCGATTTGACACTGTTAATCCTTGTT
* *
14754397 CTGG-CTGAACCTTATAGGGGTTTCTAAAGGCTGGTTTTAATTGAGTTTCATTCATTTTGTGTAC
318 CTGGTC-GAACCTTATAGGGGTTTCTAAAGGCTGGTTTTAATCGAGTTTCATTCATGTTGTGTAC
* * **
14754461 AGATCCGATCTAGAGCTGTCTAGATCTAAGTTGTAGAAGTTGCGATTATGTTAGTGCATCAGATT
382 AGATCCGGTCTAGAGCTGTCTAGATCTAAGTTGTAGAAGTTGCAATTGCGTTAGTGCATCAGATT
* * * *
14754526 -GACATAAATTAGGTGTGGGTCTAACATTTGTGTGTATTAGTGTTTAAAAAAAGGTATATTTTAT
447 CG-CATAAATTAGGTGTGGGTTTAACCTTTTTGTGTATTAGTGTTTAAAAAATGGTATATTTTAT
14754590 GCATGTGATTA
511 GCATGTGATTA
* * *
14754601 ATTATTCTA-CTCGAATTCATCGATATTGCTTAGATTTTTCATTGGTTCTTCGAATCTGTCGTTC
1 ATTATTCTAGCT-GAATTCATTG-TACTGCTTGGATTTTT-ATTGGTTCTTCGAATCTGTCGTTC
* * * * * *
14754665 TAGTAGAGTAAGTAATTTTTCTTTCGATCAGATCTGATCTCGGTTCCTTCTCCCTTGATTTTTTG
63 TAGTAGAGTAAGTAGTTTTTCTTTCAATCAGATCTTATCTCGTTTCCTTCTTCCTTGATTTTCTG
* * * *
14754730 CTTTGGACAAATGTTACTGGTGGCATAGTCAAATATTCTTTACTAGCTTTTGATTGTTATTTTGA
128 CTTTGGTCAAATGTTACTGGTGGCATAGTCAAATATTCTATACTAACTTTTGAGTGTTATTTTGA
* * *
14754795 TTGGAGGACTTAATCCGAACGTCATGGATCAACAGTGACATCTAAATTCATTTGTGTCTTTGTTA
193 TTGAAGGACCTAATCCGAACGTCATGGATCAACAGTGACATCTAAACTCATTT-TGTCTTTGTTA
* * * * *
14754860 TAAATCGAGATAGAGTAAGTGACCAAATATTGAATCCGATTTGACACTATTAATCCTTGTTCTGG
257 TATATCGAAATAGAGTAAGTGATCAAAAATTGAATCCGATTTGACACTGTTAATCCTTGTTCTGG
* * *
14754925 TCAAACCTTATA-GGGTTTCTAATGGCTGGTTTTAATCGAGTTTCATTCATGTTGTGTACAAATC
322 TCGAACCTTATAGGGGTTTCTAAAGGCTGGTTTTAATCGAGTTTCATTCATGTTGTGTACAGATC
* *
14754989 CGGTCTAGAGCTGTCTAGATCTAAGTTGTAGAAGTTGCAATTGCGTTAGTGTATCGGATTCGCAT
387 CGGTCTAGAGCTGTCTAGATCTAAGTTGTAGAAGTTGCAATTGCGTTAGTGCATCAGATTCGCAT
* *
14755054 AAATTAGGTGTGGGTTTGACCTTTTTGTGTATTAGTGTTTAAAAAATGGTATATTTTATACATGT
452 AAATTAGGTGTGGGTTTAACCTTTTTGTGTATTAGTGTTTAAAAAATGGTATATTTTATGCATGT
14755119 GATTA
517 GATTA
*
14755124 ATTATTCTAGCTGAATTCATATGTACTGCTTGGATTTTTGATTGGTTCTTCGTATCTGTCGTTC-
1 ATTATTCTAGCTGAATTCAT-TGTACTGCTTGGATTTTT-ATTGGTTCTTCGAATCTGTCGTTCT
* * *
14755188 ATGTGGAGTAAGTAGTTTTTCTTTCAATCAGATCTTATCTCGTTTCCTTCTTCCTTTATTTTCTA
64 A-GTAGAGTAAGTAGTTTTTCTTTCAATCAGATCTTATCTCGTTTCCTTCTTCCTTGATTTTCTG
**
14755253 CTTTGGTTGAATGTTACTGGTGGCATAGTCAAATATTCTATACTAACTTTTGAGTGTTATTTTGA
128 CTTTGGTCAAATGTTACTGGTGGCATAGTCAAATATTCTATACTAACTTTTGAGTGTTATTTTGA
* ** * * *
14755318 TTGAAGGACCTAATCCGAATGTCATGGATCAGTAGTGACATCAAAACTCATTCATGTCTTCGTTA
193 TTGAAGGACCTAATCCGAACGTCATGGATCAACAGTGACATCTAAACTCATT-TTGTCTTTGTTA
** *
14755383 TATATC-ACAATAGAGTAAGTAAGTGATCAAAAATTGAATTTGATTTGACATTGTTAATCCTTGT
257 TATATCGA-AAT--AG--AGTAAGTGATCAAAAATTGAATCCGATTTGACACTGTTAATCCTTGT
* *
14755447 TCTGTTCGAACCTTATAGGGGTTTCTAAAGGCTAGTTTTAATCGAGTTTCATTCATGTTGTGTAC
317 TCTGGTCGAACCTTATAGGGGTTTCTAAAGGCTGGTTTTAATCGAGTTTCATTCATGTTGTGTAC
* * *
14755512 AGATCTGGTCTAGAGTTGTCTAGATTTAAGTTGTAGAAGTTGCAA-TGACGTTAGTGCATCAGAT
382 AGATCCGGTCTAGAGCTGTCTAGATCTAAGTTGTAGAAGTTGCAATTG-CGTTAGTGCATCAGAT
*** * * *
14755576 TCATGTAAATAAGGTGTGGATTTAACCTTTTGTGTGTATTAGTGTTTAAGAAATGGTATATTTTA
446 TCGCATAAATTAGGTGTGGGTTTAACCTTTT-TGTGTATTAGTGTTTAAAAAATGGTATATTTTA
14755641 TGCATGTGATTA
510 TGCATGTGATTA
14755653 ATT
1 ATT
14755656 TTGCATATTG
Statistics
Matches: 915, Mismatches: 118, Indels: 40
0.85 0.11 0.04
Matches are distributed among these distances:
522 2 0.00
523 399 0.44
524 205 0.22
525 79 0.09
526 1 0.00
527 58 0.06
528 125 0.14
529 46 0.05
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (521 bp):
ATTATTCTAGCTGAATTCATTGTACTGCTTGGATTTTTATTGGTTCTTCGAATCTGTCGTTCTAG
TAGAGTAAGTAGTTTTTCTTTCAATCAGATCTTATCTCGTTTCCTTCTTCCTTGATTTTCTGCTT
TGGTCAAATGTTACTGGTGGCATAGTCAAATATTCTATACTAACTTTTGAGTGTTATTTTGATTG
AAGGACCTAATCCGAACGTCATGGATCAACAGTGACATCTAAACTCATTTTGTCTTTGTTATATA
TCGAAATAGAGTAAGTGATCAAAAATTGAATCCGATTTGACACTGTTAATCCTTGTTCTGGTCGA
ACCTTATAGGGGTTTCTAAAGGCTGGTTTTAATCGAGTTTCATTCATGTTGTGTACAGATCCGGT
CTAGAGCTGTCTAGATCTAAGTTGTAGAAGTTGCAATTGCGTTAGTGCATCAGATTCGCATAAAT
TAGGTGTGGGTTTAACCTTTTTGTGTATTAGTGTTTAAAAAATGGTATATTTTATGCATGTGATT
A
Found at i:14756071 original size:359 final size:358
Alignment explanation
Indices: 14755412--14756108 Score: 1277
Period size: 359 Copynumber: 1.9 Consensus size: 358
14755402 TAAGTGATCA
14755412 AAAATTGAATTTGATTTGACATTGTTAATCCTTGTTCTGTTCGAACCTTATAGGGGTTTCTAAAG
1 AAAATTGAATTTGATTTGACATTGTTAATCCTTGTTCTGTTCGAACCTTATAGGGGTTTCTAAAG
*
14755477 GCTAGTTTTAATCGAGTTTCATTCATGTTGTGTACAGATCTGGTCTAGAGTTGTCTAGATTTAAG
66 GCTAGTTTTAATCGAGTTTCATTCATGTTGTGTACAGATCTGGTCTAGAGCTGTCTAGATTTAAG
*
14755542 TTGTAGAAGTTGCAATGACGTTAGTGCATCAGATTCATGTAAATAAGGTGTGGATTTAACCTTTT
131 TTGTAGAAGTTGCAATGACGTTAGTGCATCAGATTCATGTAAATAAGGTGTGGATCTAACCTTTT
*
14755607 GTGTGTATTAGTGTTTAAGAAATGGTATATTTTATGCATGTGATTAATTTTGCATATTGATTTTG
196 GTGTGTATTAGTGTTTAAGAAATGGTATATTTTATGCATGTGATTAATTTTGCATACTGATTTTG
*
14755672 GACCTTGCCGAATGGCCTTGTGACAGTTAAGAGGTATACCAAGATTGGTAAGTAATAAGAGGCAA
261 GACCTTGCCAAATGGCCTTGTGACAGTTAAGAGGTATACCAAGATTGGTAAGTAATAAGAGGCAA
14755737 TCGTCGAATAGTTAAGAGGTATACCAAGATTGGT
326 TCGTCGAAT-GTTAAGAGGTATACCAAGATTGGT
* * *
14755771 AAAATTGAATTTGATTTGACATTGTTAATCCTTGTTCTGTTTGAACCTTATAGGTGTTTTTAAAG
1 AAAATTGAATTTGATTTGACATTGTTAATCCTTGTTCTGTTCGAACCTTATAGGGGTTTCTAAAG
14755836 GCTAGTTTTAATCGAGTTTCATTCATGTTGTGTACAGATCTGGTCTAGAGCTGTCTAGATTTAAG
66 GCTAGTTTTAATCGAGTTTCATTCATGTTGTGTACAGATCTGGTCTAGAGCTGTCTAGATTTAAG
* * * *
14755901 TTGTAGAAGTTGCGATGATGTTAGTGCATTAGATTCATGTAAATAAGGTGTGGGTCTAACCTTTT
131 TTGTAGAAGTTGCAATGACGTTAGTGCATCAGATTCATGTAAATAAGGTGTGGATCTAACCTTTT
*
14755966 GTGTGTATTAGTGTTTAAGAAATGGTATATTTTATGCATGTGATTAATTTTTCATACTGATTTTG
196 GTGTGTATTAGTGTTTAAGAAATGGTATATTTTATGCATGTGATTAATTTTGCATACTGATTTTG
14756031 GACCTTGCCAAATGGCCTTGTGACAGTTAAGAGGTATACCAAGATTGGTAAGTAATAAGAGGCAA
261 GACCTTGCCAAATGGCCTTGTGACAGTTAAGAGGTATACCAAGATTGGTAAGTAATAAGAGGCAA
14756096 TCGTCGAATGTTA
326 TCGTCGAATGTTA
14756109 GGGCCTAAAT
Statistics
Matches: 326, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
358 4 0.01
359 322 0.99
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (358 bp):
AAAATTGAATTTGATTTGACATTGTTAATCCTTGTTCTGTTCGAACCTTATAGGGGTTTCTAAAG
GCTAGTTTTAATCGAGTTTCATTCATGTTGTGTACAGATCTGGTCTAGAGCTGTCTAGATTTAAG
TTGTAGAAGTTGCAATGACGTTAGTGCATCAGATTCATGTAAATAAGGTGTGGATCTAACCTTTT
GTGTGTATTAGTGTTTAAGAAATGGTATATTTTATGCATGTGATTAATTTTGCATACTGATTTTG
GACCTTGCCAAATGGCCTTGTGACAGTTAAGAGGTATACCAAGATTGGTAAGTAATAAGAGGCAA
TCGTCGAATGTTAAGAGGTATACCAAGATTGGT
Found at i:14759062 original size:27 final size:27
Alignment explanation
Indices: 14758419--14759062 Score: 543
Period size: 27 Copynumber: 24.0 Consensus size: 27
14758409 GGAAATTGAC
* * * *
14758419 CGAATTACCCCCGTAGGGTAAAATGAC
1 CGAAATACCCTCGAAGGGTAAAATGAT
* * *
14758446 CGAATTACTCCT-GAAGGGTAAAATAAC
1 CGAAATAC-CCTCGAAGGGTAAAATGAT
*
14758473 CGAAATACCCTCGATGGGTAAAATGAT
1 CGAAATACCCTCGAAGGGTAAAATGAT
* *
14758500 CGAATTACCCCCGAAGGGTAAAATGAT
1 CGAAATACCCTCGAAGGGTAAAATGAT
* *
14758527 TGAAATACCCTTGAAGGGTAAAATGAT
1 CGAAATACCCTCGAAGGGTAAAATGAT
* *
14758554 CGAATTACCCCCGAAGGGTAAAATGAT
1 CGAAATACCCTCGAAGGGTAAAATGAT
* * * * *
14758581 CGGATTA-CCTCAAAAGGTTAAAATGAC
1 CGAAATACCCTC-GAAGGGTAAAATGAT
* * *
14758608 CG-AAT-CACTTACAAAGGGTAAAATGAC
1 CGAAATAC-CCT-CGAAGGGTAAAATGAT
*
14758635 CGAATTA-CCTCCGAAGGGTAAAATGAT
1 CGAAATACCCT-CGAAGGGTAAAATGAT
* *
14758662 TGAAATACTCC-CGAAGGATAAAATGAT
1 CGAAATAC-CCTCGAAGGGTAAAATGAT
* * * * *
14758689 CGAAATACCCCCAAAGGGTAAGATCAC
1 CGAAATACCCTCGAAGGGTAAAATGAT
*
14758716 CTAAATACCCTCGAAGGGTAAAATGA-
1 CGAAATACCCTCGAAGGGTAAAATGAT
*
14758742 CTGAAAT-CCCTCGAAGAGTAAAATGAT
1 C-GAAATACCCTCGAAGGGTAAAATGAT
* * * * *
14758769 CGAAATACCCCCAAAGGGTGAAATAAC
1 CGAAATACCCTCGAAGGGTAAAATGAT
14758796 CGAAATACCCTCGAAGGG-AGAAATGAAT
1 CGAAATACCCTCGAAGGGTA-AAATG-AT
* * *
14758824 -GAAATGCCC-CCATAGGG-AGGAATGAT
1 CGAAATACCCTCGA-AGGGTA-AAATGAT
* *
14758850 CGAATTACCC-CCATAGGGTAAAATGA-
1 CGAAATACCCTCGA-AGGGTAAAATGAT
* *
14758876 CTGAAATA-CCTCGAAGGGTAATATGAC
1 C-GAAATACCCTCGAAGGGTAAAATGAT
*
14758903 CGAAATACCCTTGAAGGGTAAAATGAT
1 CGAAATACCCTCGAAGGGTAAAATGAT
*
14758930 CAAAATACCCTCGAAGGGTAAAATGAT
1 CGAAATACCCTCGAAGGGTAAAATGAT
* *
14758957 -GAAATACCCTCGAAGGTTAAAATAAT
1 CGAAATACCCTCGAAGGGTAAAATGAT
*
14758983 TGAAATACCCT-GAAGGGTAAAATGA-
1 CGAAATACCCTCGAAGGGTAAAATGAT
* * *
14759008 CTAAAATAACCTCGAAAGGTAAAATGAT
1 C-GAAATACCCTCGAAGGGTAAAATGAT
*
14759036 CAAAATACCCTC-ATAGGGTAAAATGAT
1 CGAAATACCCTCGA-AGGGTAAAATGAT
14759063 TTTTATACCC
Statistics
Matches: 506, Mismatches: 83, Indels: 56
0.78 0.13 0.09
Matches are distributed among these distances:
26 102 0.20
27 394 0.78
28 8 0.02
29 2 0.00
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (27 bp):
CGAAATACCCTCGAAGGGTAAAATGAT
Found at i:14759475 original size:28 final size:28
Alignment explanation
Indices: 14759433--14759509 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
14759423 ACTGTAATGT
* *
14759433 TACTGTATTGCGCTAAGGTCCACACTGA
1 TACTGTATTGGGCTAAGGCCCACACTGA
* *
14759461 TACTGTGTTGGGCTAAGGCCCACACTGC
1 TACTGTATTGGGCTAAGGCCCACACTGA
*
14759489 TACTGAATTGGGCTAAGGCCC
1 TACTGTATTGGGCTAAGGCCC
14759510 TCATTGTACT
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.22, C:0.26, G:0.26, T:0.26
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACACTGA
Found at i:14775880 original size:17 final size:17
Alignment explanation
Indices: 14775858--14775891 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
14775848 AAAGTGAAGA
14775858 AAGAGGTATTCTCAAGC
1 AAGAGGTATTCTCAAGC
14775875 AAGAGGTATTCTCAAGC
1 AAGAGGTATTCTCAAGC
14775892 TAAGTAACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24
Consensus pattern (17 bp):
AAGAGGTATTCTCAAGC
Found at i:14778412 original size:24 final size:24
Alignment explanation
Indices: 14778385--14778458 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 24
14778375 AAAAGTTGTA
14778385 ATAATTAAACATTTAAAAATAATT
1 ATAATTAAACATTTAAAAATAATT
* ** *
14778409 ATAACTT--A-A--TAAAAGTTGTG
1 ATAA-TTAAACATTTAAAAATAATT
14778429 ATAATTAAACATTTAAAAATAATT
1 ATAATTAAACATTTAAAAATAATT
14778453 ATAATT
1 ATAATT
14778459 TAATTTATAA
Statistics
Matches: 36, Mismatches: 8, Indels: 12
0.64 0.14 0.21
Matches are distributed among these distances:
19 2 0.06
20 11 0.31
21 1 0.03
22 2 0.06
23 1 0.03
24 17 0.47
25 2 0.06
ACGTcount: A:0.54, C:0.04, G:0.04, T:0.38
Consensus pattern (24 bp):
ATAATTAAACATTTAAAAATAATT
Found at i:14778423 original size:44 final size:44
Alignment explanation
Indices: 14778372--14778462 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
14778362 GTTGAATTAA
14778372 AATAAAAGTTGTAATAATTAAACATTTAAAAATAATTATAACTT
1 AATAAAAGTTGTAATAATTAAACATTTAAAAATAATTATAACTT
* *
14778416 AATAAAAGTTGTGATAATTAAACATTTAAAAATAATTATAATTT
1 AATAAAAGTTGTAATAATTAAACATTTAAAAATAATTATAACTT
14778460 AAT
1 AAT
14778463 TTATAATTAT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.37
Consensus pattern (44 bp):
AATAAAAGTTGTAATAATTAAACATTTAAAAATAATTATAACTT
Found at i:14787094 original size:27 final size:28
Alignment explanation
Indices: 14787060--14787134 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 28
14787050 CACAAAAACT
* *
14787060 AAGAATAGCCTTTGTGGCGAACTCT-AA
1 AAGAATAGCCTTTGTGGCAAAATCTGAA
14787087 AAGAATAGCCTTTGTGGCAAAATCTGAA
1 AAGAATAGCCTTTGTGGCAAAATCTGAA
*
14787115 AAGAAT-GTCTTTGTGGCAAA
1 AAGAATAGCCTTTGTGGCAAA
14787135 TTAGGAATGG
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
27 36 0.82
28 8 0.18
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.27
Consensus pattern (28 bp):
AAGAATAGCCTTTGTGGCAAAATCTGAA
Found at i:14787792 original size:17 final size:17
Alignment explanation
Indices: 14787770--14787819 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
14787760 ATAGAAAGTC
14787770 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
*
14787787 AAAGATATAGGTATCAG
1 AAAGATATGGGTATCAG
14787804 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
14787820 AAATCTGAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.44, C:0.06, G:0.26, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:14787973 original size:2 final size:2
Alignment explanation
Indices: 14787966--14788004 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
14787956 TAAGGCATTT
14787966 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
14788005 TTTTGTAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:14790196 original size:41 final size:41
Alignment explanation
Indices: 14790136--14790325 Score: 301
Period size: 41 Copynumber: 4.6 Consensus size: 41
14790126 GACTATACGT
*
14790136 CTAGCAGGCTAAGTACCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
14790177 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTAT-AAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
*
14790217 CTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* * *
14790258 CTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
* *
14790299 CTAGCAGGATAAGTGCCGATGAATCTG
1 CTAGCAGGCTAAGTGCCGGTG-ATCTG
14790326 TTAAATTAAG
Statistics
Matches: 139, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
40 39 0.28
41 95 0.68
42 5 0.04
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
Found at i:14790271 original size:81 final size:82
Alignment explanation
Indices: 14790136--14790325 Score: 310
Period size: 81 Copynumber: 2.3 Consensus size: 82
14790126 GACTATACGT
*
14790136 CTAGCAGGCTAAGTACCGGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
*
14790201 TGAATCAGGTTATAA-C
66 TGAATCAGGCTATAAGC
*
14790217 CTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
*
14790282 TGAATTAGGCTATAAGC
66 TGAATCAGGCTATAAGC
* *
14790299 CTAGCAGGATAAGTGCCGATGAATCTG
1 CTAGCAGGCTAAGTGCCGGTG-ATCTG
14790326 TTAAATTAAG
Statistics
Matches: 100, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
81 76 0.76
82 20 0.20
83 4 0.04
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (82 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATC
TGAATCAGGCTATAAGC
Found at i:14797164 original size:41 final size:41
Alignment explanation
Indices: 14797107--14797215 Score: 182
Period size: 41 Copynumber: 2.6 Consensus size: 41
14797097 NNNNNNNNNN
*
14797107 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGTTATAAAC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
* *
14797148 CTAGCAGGCTAAGTGCCGGTGATCTGAATTAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
14797189 CTAGCAGGCTAAGTGCCGGTGAATCTG
1 CTAGCAGGCTAAGTGCCGGTG-ATCTG
14797216 TTAAATTAAG
Statistics
Matches: 64, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
41 59 0.92
42 5 0.08
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAAC
Found at i:14801854 original size:15 final size:15
Alignment explanation
Indices: 14801834--14801941 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
14801824 TTTATGGAAA
14801834 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
14801849 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
14801863 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
14801879 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
14801893 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
14801909 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
14801923 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
14801939 ATC
1 ATC
14801942 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:14801863 original size:30 final size:30
Alignment explanation
Indices: 14801827--14801941 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
14801817 ATCCATATTT
*
14801827 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
14801857 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
14801887 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
14801917 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
14801942 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:14806547 original size:15 final size:15
Alignment explanation
Indices: 14806527--14806634 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
14806517 TTTATGGAAA
14806527 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
14806542 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
14806556 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
14806572 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
14806586 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
14806602 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
14806616 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
14806632 ATC
1 ATC
14806635 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:14806556 original size:30 final size:30
Alignment explanation
Indices: 14806520--14806634 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
14806510 ATCCATATTT
*
14806520 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
14806550 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
14806580 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
14806610 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
14806635 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:14810215 original size:83 final size:83
Alignment explanation
Indices: 14810076--14810241 Score: 323
Period size: 83 Copynumber: 2.0 Consensus size: 83
14810066 ATGATATGTT
14810076 GATAGCATCTAAGAGTAAAGTTGAAATTGAGAGATTGAAGACTCAACTCAACCTTGAGTTTGAGA
1 GATAGCATCTAAGAGTAAAGTTGAAATTGAGAGATTGAAGACTCAACTCAACCTTGAGTTTGAGA
*
14810141 TGAAAGATCTAGGTGAAA
66 TGAAAGACCTAGGTGAAA
14810159 GATAGCATCTAAGAGTAAAGTTGAAATTGAGAGATTGAAGACTCAACTCAACCTTGAGTTTGAGA
1 GATAGCATCTAAGAGTAAAGTTGAAATTGAGAGATTGAAGACTCAACTCAACCTTGAGTTTGAGA
14810224 TGAAAGACCTAGGTGAAA
66 TGAAAGACCTAGGTGAAA
14810242 CTTAGAAGAT
Statistics
Matches: 82, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (83 bp):
GATAGCATCTAAGAGTAAAGTTGAAATTGAGAGATTGAAGACTCAACTCAACCTTGAGTTTGAGA
TGAAAGACCTAGGTGAAA
Found at i:14810775 original size:130 final size:130
Alignment explanation
Indices: 14810542--14810797 Score: 449
Period size: 130 Copynumber: 2.0 Consensus size: 130
14810532 TAGTGAGCAG
* *
14810542 GTATATGCATAATCCTGGAAAAGGACATTGGCAAGCTGTGAAATGGATTCTACGGTATATTCATA
1 GTATATGCATAATCCTAGAAAAGGACATTGGCAAGCTGTGAAATGGATTCTACGGTATATTCAGA
* * *
14810607 AGACCATGGATATTGGATTACTGTTCAAGCAGGATACTACACTTGGTAAAGGTGTTGTTGGGTAT
66 AGACCATGGATATTGGATTACTGTTCAAACAAGATACTACACTTGGTAAAGGTGTTATTGGGTAT
*
14810672 GTATATGCATAATCGTAGAAAAGGACATTGGCAAGCTGTGAAATGGATTCTACGGTATATTCAGA
1 GTATATGCATAATCCTAGAAAAGGACATTGGCAAGCTGTGAAATGGATTCTACGGTATATTCAGA
*
14810737 ATACCATGGATATTGGATTACTGTTCAAACAAGATACTACACTTGGTAAAGGTGTTATTGG
66 AGACCATGGATATTGGATTACTGTTCAAACAAGATACTACACTTGGTAAAGGTGTTATTGG
14810798 CTACGTTCAT
Statistics
Matches: 119, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
130 119 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.30
Consensus pattern (130 bp):
GTATATGCATAATCCTAGAAAAGGACATTGGCAAGCTGTGAAATGGATTCTACGGTATATTCAGA
AGACCATGGATATTGGATTACTGTTCAAACAAGATACTACACTTGGTAAAGGTGTTATTGGGTAT
Found at i:14811401 original size:17 final size:17
Alignment explanation
Indices: 14811379--14811428 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
14811369 ATAGAAAGTC
*
14811379 AAAGATATGGGAATCAG
1 AAAGATATGGGTATCAG
* *
14811396 AAAGATATAGGTATTAG
1 AAAGATATGGGTATCAG
14811413 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
14811429 AAATCTGAGA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 28 1.00
ACGTcount: A:0.46, C:0.04, G:0.26, T:0.24
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:14816822 original size:21 final size:21
Alignment explanation
Indices: 14816793--14816834 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14816783 CCAAAAGAAA
*
14816793 ATTTTCATTTTCATTATTATT
1 ATTTCCATTTTCATTATTATT
* *
14816814 ATTTCCATTTTTATTTTTATT
1 ATTTCCATTTTCATTATTATT
14816835 TTTATGTTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.10, G:0.00, T:0.69
Consensus pattern (21 bp):
ATTTCCATTTTCATTATTATT
Found at i:14823953 original size:10 final size:10
Alignment explanation
Indices: 14823927--14823981 Score: 56
Period size: 10 Copynumber: 5.3 Consensus size: 10
14823917 TGCGAATTTG
* *
14823927 TCAAAAATAG
1 TCAAAATTAA
14823937 TCAAAATTAA
1 TCAAAATTAA
14823947 TCAAAATTAA
1 TCAAAATTAA
*
14823957 CTATAAAATTAA
1 -T-CAAAATTAA
*
14823969 TTAAAATTAA
1 TCAAAATTAA
14823979 TCA
1 TCA
14823982 TGTTCGTATT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
10 29 0.74
11 2 0.05
12 8 0.21
ACGTcount: A:0.58, C:0.09, G:0.02, T:0.31
Consensus pattern (10 bp):
TCAAAATTAA
Found at i:14832335 original size:216 final size:216
Alignment explanation
Indices: 14831961--14832388 Score: 707
Period size: 216 Copynumber: 2.0 Consensus size: 216
14831951 TTGGAAGATA
*
14831961 GTATTTATACCCTCTAATTTATTTTCAACCGTTGTGGTTGTTGTAGAAGTGAATTGAGCCTTCGG
1 GTATTTATACCCTCTAATTGATTTTCAACCGTTGTGGTTGTTGTAGAAGTGAATTGAGCCTTCGG
* * **
14832026 GATGAAATACTAGATCATTAACTTTACCTGTAGCAACGAGTATCGATACCAACTAAAAAGGTAAC
66 GATGAAATACTAGATCATTAAATTCACCTACAGCAACGAGTATCGATACCAACTAAAAAGGTAAC
* *
14832091 GATATTTTTTGTAAATAATGATGATTTCAGTGACCGTTGAAGCAGGAATATCTACACCTTAGGAA
131 GATATTTTTTGTAAATAATGATGATTTCAGTAACCGTTGAAGCAGGAATATCTACACCTTAAGAA
14832156 ATATATTGATACCTTAAAATG
196 ATATATTGATACCTTAAAATG
*
14832177 GTATTTATACCCTCTAATTGATTTTCAACCGTTGTGGTTGTTGTAGAAGTGAA-TGTAG-CTGTT
1 GTATTTATACCCTCTAATTGATTTTCAACCGTTGTGGTTGTTGTAGAAGTGAATTG-AGCCT-TC
* *
14832240 GGGATGAAATACTAGGTCATTAAATTCACCTACAGCAACGAGTATCGATACCAACTAAAAGGGTA
64 GGGATGAAATACTAGATCATTAAATTCACCTACAGCAACGAGTATCGATACCAACTAAAAAGGTA
* * *
14832305 TCGATATTTTTTGTAAATAATGTTGATTTCAGTAACCGTTGAAGCAGGAATATCTATACCTTAAG
129 ACGATATTTTTTGTAAATAATGATGATTTCAGTAACCGTTGAAGCAGGAATATCTACACCTTAAG
14832370 AAATATATTGATACCTTAA
194 AAATATATTGATACCTTAA
14832389 GAAAAGTATT
Statistics
Matches: 197, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
215 4 0.02
216 193 0.98
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (216 bp):
GTATTTATACCCTCTAATTGATTTTCAACCGTTGTGGTTGTTGTAGAAGTGAATTGAGCCTTCGG
GATGAAATACTAGATCATTAAATTCACCTACAGCAACGAGTATCGATACCAACTAAAAAGGTAAC
GATATTTTTTGTAAATAATGATGATTTCAGTAACCGTTGAAGCAGGAATATCTACACCTTAAGAA
ATATATTGATACCTTAAAATG
Found at i:14832383 original size:20 final size:20
Alignment explanation
Indices: 14832360--14832403 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
14832350 AGGAATATCT
14832360 ATACCTTAAGAAATA-TATTG
1 ATACCTTAAGAAA-AGTATTG
14832380 ATACCTTAAGAAAAGTATTG
1 ATACCTTAAGAAAAGTATTG
14832400 ATAC
1 ATAC
14832404 TGGATTGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 1 0.04
20 22 0.96
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.32
Consensus pattern (20 bp):
ATACCTTAAGAAAAGTATTG
Found at i:14836050 original size:75 final size:76
Alignment explanation
Indices: 14835941--14836094 Score: 220
Period size: 75 Copynumber: 2.0 Consensus size: 76
14835931 AGGTTTTTGT
* ** * *
14835941 ACCTAGCGCTAGTCGTTTAACTCGACATGATCAATGGTGTGCCCAACACTAGTCAAACGAGTCGA
1 ACCTAGCGCTAGCCGAATAACTCGACAAGATCAATAGTGTGCCCAACACTAGTCAAACGAGTCGA
*
14836006 CAAATTATTAC
66 AAAATTATTAC
* *
14836017 ACCTAGCGCTAGCCGAATAAC-CGACAAGATCAATAGTGTGCCCAGCACTAGTCGAACGAGTCGA
1 ACCTAGCGCTAGCCGAATAACTCGACAAGATCAATAGTGTGCCCAACACTAGTCAAACGAGTCGA
*
14836081 AAAATTATTGC
66 AAAATTATTAC
14836092 ACC
1 ACC
14836095 CGGAGCTAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
75 51 0.74
76 18 0.26
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.21
Consensus pattern (76 bp):
ACCTAGCGCTAGCCGAATAACTCGACAAGATCAATAGTGTGCCCAACACTAGTCAAACGAGTCGA
AAAATTATTAC
Found at i:14836314 original size:36 final size:35
Alignment explanation
Indices: 14836256--14836324 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
14836246 TATAAATACA
*
14836256 TATACTTCCATAACTTACATTCAATTGAATTAACT
1 TATACATCCATAACTTACATTCAATTGAATTAACT
* *
14836291 TATACATCCATAAACTTCCATTCAATTTAATTAA
1 TATACATCCAT-AACTTACATTCAATTGAATTAA
14836325 AAATTACATT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 10 0.33
36 20 0.67
ACGTcount: A:0.39, C:0.20, G:0.01, T:0.39
Consensus pattern (35 bp):
TATACATCCATAACTTACATTCAATTGAATTAACT
Found at i:14836416 original size:41 final size:41
Alignment explanation
Indices: 14836339--14836416 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
14836329 TACATTAGAT
*
14836339 ATATAATAAGGCATCAAGTAGTAATTAGATTAATTAAAAAA
1 ATATAATAAGGCATCAAGTAGTAATTAGACTAATTAAAAAA
* *
14836380 ATATAATAAGGCATTAAGTAGTAATTAGACTCATTAA
1 ATATAATAAGGCATCAAGTAGTAATTAGACTAATTAA
14836417 TAATTTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.50, C:0.06, G:0.13, T:0.31
Consensus pattern (41 bp):
ATATAATAAGGCATCAAGTAGTAATTAGACTAATTAAAAAA
Found at i:14837022 original size:199 final size:198
Alignment explanation
Indices: 14836667--14837064 Score: 645
Period size: 199 Copynumber: 2.0 Consensus size: 198
14836657 CACAATTAGC
* * *
14836667 CTACTGCTGCTGTCCAAACAGCAAGCAATTTCAGCTTTTCACTAAATCCTTTTTTTTTGCGTTTC
1 CTACTACTGCTGTCCAAACAACAAGCAATTTCAGCTTTTCACTAAATCCTTTTTCTTTGCGTTTC
*
14836732 TGGTACACACCTGGTTCTCTTTGATGCTAAAACAGTCCCCGAGCACTCCAAAGCCTATAATCAAG
66 TGGTACACACCTAGTTCTCTTTGATGCTAAAACAGTCCCCGAGCACTCCAAAGCCTATAATCAAG
* * * *
14836797 ATACTCAACATCATTTTAATGGATTTACAAGAAAATTGACAACCAAGAATGAACAGAAACCCAAC
131 ATACTCAACATCAATTTAACGGATTTACAAGAAAATTGAAAACCAAGAACGAACAGAAACCCAAC
14836862 TTA
196 TTA
*
14836865 CTACTACTGCTGTCCAAACAACAAGCAATTTTAGCTTTTCACCT-AATCCCTTTTTCTTTGCGTT
1 CTACTACTGCTGTCCAAACAACAAGCAATTTCAGCTTTTCA-CTAAAT-CCTTTTTCTTTGCGTT
* * *
14836929 TCTGGTACTCACCTAGTTCTCTTTGATGCTAAATCAGTCCCTGAGCACTCCAAAGCCTATAATCA
64 TCTGGTACACACCTAGTTCTCTTTGATGCTAAAACAGTCCCCGAGCACTCCAAAGCCTATAATCA
* *
14836994 AGATACTCAACATCAATTTAACGGATTTACAAGCAAATTGAAAACCAAGAACGAACAGAAACCCC
129 AGATACTCAACATCAATTTAACGGATTTACAAGAAAATTGAAAACCAAGAACGAACAGAAACCCA
14837059 ACTTA
194 ACTTA
14837064 C
1 C
14837065 CACCAACGAT
Statistics
Matches: 184, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
198 41 0.22
199 143 0.78
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (198 bp):
CTACTACTGCTGTCCAAACAACAAGCAATTTCAGCTTTTCACTAAATCCTTTTTCTTTGCGTTTC
TGGTACACACCTAGTTCTCTTTGATGCTAAAACAGTCCCCGAGCACTCCAAAGCCTATAATCAAG
ATACTCAACATCAATTTAACGGATTTACAAGAAAATTGAAAACCAAGAACGAACAGAAACCCAAC
TTA
Found at i:14844523 original size:16 final size:16
Alignment explanation
Indices: 14844491--14844530 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
14844481 AAAAACTCAG
14844491 TCTTTTGCTTTTGATTT
1 TCTTTT-CTTTTGATTT
14844508 TCTTTTC-TTTGTATTT
1 TCTTTTCTTTTG-ATTT
14844524 TCTTTTC
1 TCTTTTC
14844531 ACTGATTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.18
16 12 0.55
17 6 0.27
ACGTcount: A:0.05, C:0.15, G:0.07, T:0.72
Consensus pattern (16 bp):
TCTTTTCTTTTGATTT
Found at i:14847233 original size:13 final size:13
Alignment explanation
Indices: 14847215--14847239 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14847205 TGGTTTATAT
14847215 GTGTGAAAATTTC
1 GTGTGAAAATTTC
14847228 GTGTGAAAATTT
1 GTGTGAAAATTT
14847240 TATCATTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:14852735 original size:16 final size:16
Alignment explanation
Indices: 14852714--14852744 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14852704 CTATGCATGC
14852714 AAAATATAAAAGACAG
1 AAAATATAAAAGACAG
14852730 AAAATATAAAAGACA
1 AAAATATAAAAGACA
14852745 TAGTAGTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.71, C:0.06, G:0.10, T:0.13
Consensus pattern (16 bp):
AAAATATAAAAGACAG
Found at i:14858650 original size:39 final size:39
Alignment explanation
Indices: 14858534--14858669 Score: 130
Period size: 40 Copynumber: 3.4 Consensus size: 39
14858524 CGTTTGGATA
* *
14858534 AAAAACGCCGCTAAAAATTGAGCATTAGCGGCGCTTCTTC
1 AAAAACGCCGCTAAAAA-TGAGCATTAGCGGCGTTTTTTC
* * * * * *
14858574 ATAAACGCCACTAAAGATCTAGTATTAGCGGCGTTTTTTG
1 AAAAACGCCGCTAAAAAT-GAGCATTAGCGGCGTTTTTTC
* *
14858614 AAAAATGCCGCTAAAAATGAGCATTAGCGGC-ATTTTTC
1 AAAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTTTTC
* *
14858652 AGAAAGCGCCGCAAAAAA
1 A-AAAACGCCGCTAAAAA
14858670 CCCAAGCACA
Statistics
Matches: 75, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
38 6 0.08
39 25 0.33
40 44 0.59
ACGTcount: A:0.36, C:0.21, G:0.20, T:0.24
Consensus pattern (39 bp):
AAAAACGCCGCTAAAAATGAGCATTAGCGGCGTTTTTTC
Found at i:14858762 original size:41 final size:41
Alignment explanation
Indices: 14858709--14859022 Score: 405
Period size: 41 Copynumber: 7.7 Consensus size: 41
14858699 TTTCGGGGCG
* * * * *
14858709 TTAGCGGCGTTTTTTAAAAAGCGCCACTAATTCTCGGGGCT
1 TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGTCT
* * * *
14858750 TTAGCGGTGTTTTTTGAA-AAGCACCGCTAATTCTCGGGGCT
1 TTAGCGGCG-TTTTTGAAGAAGCGCCGCTAATGCTCGGGTCT
* *
14858791 TTAGCGGCATTTTTGAATAAGCGCCGCTAATGCTCGGGTCT
1 TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGTCT
* *
14858832 TTAGCGGCGTTTTTCAAGAAGCGCCGCTAATGCTCGGGTTT
1 TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGTCT
* * * *
14858873 TTAGCGGCATTTTTCAAGAAGCGCCGCTAATGCTCAGGACT
1 TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGTCT
* *
14858914 TTAGCGGCGCTTTTGAAGAAGCGCCGCTAATGCTCGGGTAT
1 TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGTCT
* *
14858955 TTAGCGGCGTTTTTTAAGAAGCGCCGCTAATGCTTGGGTCT
1 TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGTCT
* *
14858996 TTAGTGGCGTTTTTGAAAAAGCGCCGC
1 TTAGCGGCGTTTTTGAAGAAGCGCCGC
14859023 AAAAAATATT
Statistics
Matches: 241, Mismatches: 30, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
40 8 0.03
41 226 0.94
42 7 0.03
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (41 bp):
TTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGGTCT
Found at i:14859803 original size:14 final size:14
Alignment explanation
Indices: 14859760--14859833 Score: 53
Period size: 14 Copynumber: 5.4 Consensus size: 14
14859750 AGGGATTATT
* *
14859760 GTTTATGGTTTACG
1 GTTTAAGGTTTAGG
* *
14859774 GTTTAAGGGTTGGG
1 GTTTAAGGTTTAGG
14859788 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
*
14859802 G--TCAGGTTTAGG
1 GTTTAAGGTTTAGG
* * *
14859814 ATTTAGGGGTTAGGG
1 GTTTAAGGTTTA-GG
14859829 GTTTA
1 GTTTA
14859834 GAGTTAATCC
Statistics
Matches: 45, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
12 10 0.22
14 29 0.64
15 6 0.13
ACGTcount: A:0.18, C:0.03, G:0.39, T:0.41
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:14860122 original size:21 final size:20
Alignment explanation
Indices: 14860088--14860128 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
14860078 TATAGATTTA
*
14860088 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
14860108 GGGATTTAAGGTTTAGGGGTT
1 GGGA-TTAAGGTTTAAGGGTT
14860129 AAGAGTTAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.20, C:0.00, G:0.41, T:0.39
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:14860130 original size:14 final size:14
Alignment explanation
Indices: 14860120--14860153 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
14860110 GATTTAAGGT
14860120 TTAGGGGTTAAGAG
1 TTAGGGGTTAAGAG
*
14860134 TTAGGGGTTAGGAG
1 TTAGGGGTTAAGAG
14860148 TTAGGG
1 TTAGGG
14860154 ATCTAGGGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.24, C:0.00, G:0.47, T:0.29
Consensus pattern (14 bp):
TTAGGGGTTAAGAG
Found at i:14861138 original size:9 final size:9
Alignment explanation
Indices: 14861124--14861149 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14861114 TTTCACAAAC
14861124 AGGTTACAG
1 AGGTTACAG
14861133 AGGTTACAG
1 AGGTTACAG
14861142 AGGTTACA
1 AGGTTACA
14861150 ACCATTGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.31, T:0.23
Consensus pattern (9 bp):
AGGTTACAG
Found at i:14863674 original size:43 final size:43
Alignment explanation
Indices: 14863599--14863851 Score: 278
Period size: 43 Copynumber: 5.9 Consensus size: 43
14863589 GCGTTTTTCT
* * *
14863599 AAAAAGCGTCGCTAAAGGTCTAT--TCTATAGCGGCGTTTGAGG
1 AAAAAGCGCCGCTAAAGGTCT-TGGTCTTTAGCGGCGTTTGTGG
* * * *
14863641 AAAAAACGCCGCTAATGGTCATAGTCTTTAGCGGCGTTTGTGG
1 AAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGG
** *
14863684 GGAAAGCGCCGCTAAAGGTCTTGGTCTTTAGTGGCGTTTGTGG
1 AAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGG
** *** * *
14863727 GGAAAGCATTGCTAAAGGTCTTGGTATTTAGCGGTGTTTGT-G
1 AAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGG
* *
14863769 ACAAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCATTTGTGG
1 A-AAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGG
**
14863813 GGAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
1 AAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTT
14863852 ATTTCTAAAA
Statistics
Matches: 175, Mismatches: 32, Indels: 7
0.82 0.15 0.03
Matches are distributed among these distances:
41 1 0.01
42 18 0.10
43 155 0.89
44 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.29
Consensus pattern (43 bp):
AAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGG
Found at i:14868659 original size:27 final size:27
Alignment explanation
Indices: 14868563--14868659 Score: 108
Period size: 27 Copynumber: 3.6 Consensus size: 27
14868553 GTGGTCCAGG
* *
14868563 TTGTTGATCACCATAGCTTGGTACAGA
1 TTGTTGATCACCATGGCTTAGTACAGA
** * *
14868590 TTGTTGATCACTGTGG-TTTG-ACATTGG
1 TTGTTGATCACCATGGCTTAGTACA--GA
14868617 TTGTTGATCACCATGGCTTAGTACAGA
1 TTGTTGATCACCATGGCTTAGTACAGA
14868644 TTGTTGATCACCATGG
1 TTGTTGATCACCATGG
14868660 ATCGGCAAAG
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
25 3 0.05
26 3 0.05
27 45 0.79
28 3 0.05
29 3 0.05
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.37
Consensus pattern (27 bp):
TTGTTGATCACCATGGCTTAGTACAGA
Found at i:14868673 original size:54 final size:54
Alignment explanation
Indices: 14868560--14868689 Score: 170
Period size: 54 Copynumber: 2.4 Consensus size: 54
14868550 GCCGTGGTCC
* * ** * * *
14868560 AGGTTGTTGATCACCATAGCTTGGTACAGATTGTTGATCACTGTGGTTTGACAT
1 AGGTTGTTGATCACCATGGCTTAGTACAGATTGTTGATCACCATGGATCGACAA
* *
14868614 TGGTTGTTGATCACCATGGCTTAGTACAGATTGTTGATCACCATGGATCGGCAA
1 AGGTTGTTGATCACCATGGCTTAGTACAGATTGTTGATCACCATGGATCGACAA
*
14868668 AGGTTGTTGATGACCATGGCTT
1 AGGTTGTTGATCACCATGGCTT
14868690 GATCTTAAAC
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (54 bp):
AGGTTGTTGATCACCATGGCTTAGTACAGATTGTTGATCACCATGGATCGACAA
Found at i:14868674 original size:27 final size:27
Alignment explanation
Indices: 14868615--14868686 Score: 81
Period size: 27 Copynumber: 2.7 Consensus size: 27
14868605 GTTTGACATT
* * * *
14868615 GGTTGTTGATCACCATGGCTTAGTACA
1 GGTTGTTGATCACCATGGATCAGCAAA
* *
14868642 GATTGTTGATCACCATGGATCGGCAAA
1 GGTTGTTGATCACCATGGATCAGCAAA
*
14868669 GGTTGTTGATGACCATGG
1 GGTTGTTGATCACCATGG
14868687 CTTGATCTTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.31
Consensus pattern (27 bp):
GGTTGTTGATCACCATGGATCAGCAAA
Found at i:14868803 original size:27 final size:27
Alignment explanation
Indices: 14868773--14868862 Score: 92
Period size: 27 Copynumber: 3.3 Consensus size: 27
14868763 AGTTGGTAAT
* *
14868773 ATGGTTTGACATAGGTTGTTGATCACC
1 ATGGCTTGACAAAGGTTGTTGATCACC
** * *
14868800 ATGGCTTGGTACAGATTGTTGATCACC
1 ATGGCTTGACAAAGGTTGTTGATCACC
* *
14868827 ATGGATCTG-CAAAGGTTGTTGATGACC
1 ATGGCT-TGACAAAGGTTGTTGATCACC
14868854 ATGGCTTGA
1 ATGGCTTGA
14868863 TCTTAAATGG
Statistics
Matches: 50, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
26 2 0.04
27 46 0.92
28 2 0.04
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (27 bp):
ATGGCTTGACAAAGGTTGTTGATCACC
Found at i:14868888 original size:171 final size:171
Alignment explanation
Indices: 14868603--14868945 Score: 632
Period size: 171 Copynumber: 2.0 Consensus size: 171
14868593 TTGATCACTG
*
14868603 TGGTTTGACATTGGTTGTTGATCACCATGGCTTAGTACAGATTGTTGATCACCATGGATCGGCAA
1 TGGTTTGACATAGGTTGTTGATCACCATGGCTTAGTACAGATTGTTGATCACCATGGATCGGCAA
14868668 AGGTTGTTGATGACCATGGCTTGATCTTAAACGAGGTCTCTTCCTCCTAGGTTGTTTTGCCACTC
66 AGGTTGTTGATGACCATGGCTTGATCTTAAACGAGGTCTCTTCCTCCTAGGTTGTTTTGCCACTC
*
14868733 GCTCATTGATTTGTACTGGATGGGAATCATAGTTGGTAATA
131 GCTCATTGATTTGTACTGGATGGAAATCATAGTTGGTAATA
* *
14868774 TGGTTTGACATAGGTTGTTGATCACCATGGCTTGGTACAGATTGTTGATCACCATGGATCTGCAA
1 TGGTTTGACATAGGTTGTTGATCACCATGGCTTAGTACAGATTGTTGATCACCATGGATCGGCAA
* *
14868839 AGGTTGTTGATGACCATGGCTTGATCTTAAATGGGGTCTCTTCCTCCTAGGTTGTTTTGCCACTC
66 AGGTTGTTGATGACCATGGCTTGATCTTAAACGAGGTCTCTTCCTCCTAGGTTGTTTTGCCACTC
14868904 GCTCATTGATTTGTACTGGATGGAAATCATAGTTGGTAATA
131 GCTCATTGATTTGTACTGGATGGAAATCATAGTTGGTAATA
14868945 T
1 T
14868946 AAGCCACAGG
Statistics
Matches: 166, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
171 166 1.00
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (171 bp):
TGGTTTGACATAGGTTGTTGATCACCATGGCTTAGTACAGATTGTTGATCACCATGGATCGGCAA
AGGTTGTTGATGACCATGGCTTGATCTTAAACGAGGTCTCTTCCTCCTAGGTTGTTTTGCCACTC
GCTCATTGATTTGTACTGGATGGAAATCATAGTTGGTAATA
Found at i:14886149 original size:22 final size:22
Alignment explanation
Indices: 14886123--14886197 Score: 98
Period size: 22 Copynumber: 3.3 Consensus size: 22
14886113 AAGTATAATG
14886123 TTATTATTTATGAAAATAATAT
1 TTATTATTTATGAAAATAATAT
*
14886145 TTATTATTGATGAAAATAATAT
1 TTATTATTTATGAAAATAATAT
*
14886167 TTATTATTGTTAT-AAAAAAATAT
1 TTATTA-T-TTATGAAAATAATAT
14886190 TTAATTAT
1 TT-ATTAT
14886198 AACTATAAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
22 27 0.57
23 13 0.28
24 7 0.15
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.49
Consensus pattern (22 bp):
TTATTATTTATGAAAATAATAT
Found at i:14886170 original size:19 final size:21
Alignment explanation
Indices: 14886117--14886175 Score: 82
Period size: 22 Copynumber: 2.7 Consensus size: 21
14886107 AGATCCAAGT
* *
14886117 ATAATGTTATTATTTATGAAA
1 ATAATATTATTATTGATGAAA
14886138 ATAATATTTATTATTGATGAAA
1 ATAATA-TTATTATTGATGAAA
14886160 ATAATATTTATTATTG
1 ATAATA-TTATTATTG
14886176 TTATAAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
21 5 0.14
22 30 0.86
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.49
Consensus pattern (21 bp):
ATAATATTATTATTGATGAAA
Found at i:14886495 original size:21 final size:21
Alignment explanation
Indices: 14886469--14886521 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
14886459 CATTGTTTCT
*
14886469 AATCTCACTGCTACAGTATCC
1 AATCTCACTGCTACAGTAACC
* *
14886490 AATCTCACCGCTACAGTAACT
1 AATCTCACTGCTACAGTAACC
14886511 AATCTCACTGC
1 AATCTCACTGC
14886522 CACCGTTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.30, C:0.34, G:0.09, T:0.26
Consensus pattern (21 bp):
AATCTCACTGCTACAGTAACC
Found at i:14897043 original size:34 final size:34
Alignment explanation
Indices: 14897000--14897068 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
14896990 TATAGGTAAA
14897000 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
1 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
14897034 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
1 ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
14897068 A
1 A
14897069 AAATTATCTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.45, C:0.17, G:0.09, T:0.29
Consensus pattern (34 bp):
ATACAAGAGTAATTGAACCCTAATAAAACTCTTT
Found at i:14901406 original size:23 final size:22
Alignment explanation
Indices: 14901354--14901406 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
14901344 TCCACGTCTT
*
14901354 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
14901376 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
14901399 TTTCTTTT
1 TTTCTTTT
14901407 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:14903760 original size:22 final size:23
Alignment explanation
Indices: 14903735--14903794 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
14903725 TGGACTGAAT
14903735 ATAAAAATTTAAACTAAAT-AAA
1 ATAAAAATTTAAACTAAATAAAA
*
14903757 ATAAATAA-ATAAA-TAAATAAAA
1 ATAAA-AATTTAAACTAAATAAAA
*
14903779 ATAAAACTTTACAACT
1 ATAAAAATTTA-AACT
14903795 TGGGCCACTT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 6 0.20
22 19 0.63
23 4 0.13
24 1 0.03
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (23 bp):
ATAAAAATTTAAACTAAATAAAA
Found at i:14903762 original size:4 final size:4
Alignment explanation
Indices: 14903744--14903777 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
14903734 TATAAAAATT
14903744 TAAA CTAAA TAAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA -TAAA T-AAA TAAA TAAA TAAA TAAA TAAA
14903778 AATAAAACTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.74, C:0.03, G:0.00, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:14911545 original size:19 final size:19
Alignment explanation
Indices: 14911521--14911587 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
14911511 GTAACCCCAT
14911521 TTTTCTTTCAACCACAAAA
1 TTTTCTTTCAACCACAAAA
* * *
14911540 TTTTC-TTGAA-GACTTGAAA
1 TTTTCTTTCAACCAC--AAAA
* *
14911559 TATTCTTTCAACCACAAAT
1 TTTTCTTTCAACCACAAAA
14911578 TTTTCTTTCA
1 TTTTCTTTCA
14911588 TAAGAAATAC
Statistics
Matches: 35, Mismatches: 9, Indels: 8
0.67 0.17 0.15
Matches are distributed among these distances:
17 2 0.06
18 4 0.11
19 23 0.66
20 4 0.11
21 2 0.06
ACGTcount: A:0.31, C:0.21, G:0.04, T:0.43
Consensus pattern (19 bp):
TTTTCTTTCAACCACAAAA
Found at i:14911607 original size:33 final size:33
Alignment explanation
Indices: 14911568--14911634 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
14911558 ATATTCTTTC
14911568 AACCACAAATTTTTCTTTCATAAGAAATACCCA
1 AACCACAAATTTTTCTTTCATAAGAAATACCCA
14911601 AACCACAAATTTTTCTTTCATAAGAAATACCCA
1 AACCACAAATTTTTCTTTCATAAGAAATACCCA
14911634 A
1 A
14911635 GTCTTGTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.43, C:0.24, G:0.03, T:0.30
Consensus pattern (33 bp):
AACCACAAATTTTTCTTTCATAAGAAATACCCA
Found at i:14925463 original size:14 final size:14
Alignment explanation
Indices: 14925444--14925497 Score: 58
Period size: 14 Copynumber: 4.0 Consensus size: 14
14925434 ACGTTAGCGA
14925444 ATAAATATATAAAT
1 ATAAATATATAAAT
* *
14925458 ATAAATAAACAAAT
1 ATAAATATATAAAT
**
14925472 ATTTATATATAAA-
1 ATAAATATATAAAT
14925485 ATAAA-ATATAAAT
1 ATAAATATATAAAT
14925498 TGAATAATTT
Statistics
Matches: 31, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
12 7 0.23
13 3 0.10
14 21 0.68
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAAATATATAAAT
Found at i:14925481 original size:22 final size:23
Alignment explanation
Indices: 14925446--14925489 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
14925436 GTTAGCGAAT
14925446 AAATATATAAATAT-AAATAAAC
1 AAATATATAAATATAAAATAAAC
* *
14925468 AAATATTTATATATAAAATAAA
1 AAATATATAAATATAAAATAAA
14925490 ATATAAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.66, C:0.02, G:0.00, T:0.32
Consensus pattern (23 bp):
AAATATATAAATATAAAATAAAC
Found at i:14925960 original size:20 final size:20
Alignment explanation
Indices: 14925935--14925983 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
14925925 AGGAGCAATT
*
14925935 AAATCAATTTGATTAAAATC
1 AAATCAAATTGATTAAAATC
*
14925955 AAATCAAATTGATTGAAATC
1 AAATCAAATTGATTAAAATC
*
14925975 AAATAAAAT
1 AAATCAAAT
14925984 CAGGATATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.55, C:0.08, G:0.06, T:0.31
Consensus pattern (20 bp):
AAATCAAATTGATTAAAATC
Found at i:14927105 original size:35 final size:36
Alignment explanation
Indices: 14927065--14927132 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 36
14927055 ATTGATATAC
*
14927065 AAAAATTAAAGTTCAAGT-CCACATTGGACATTATG
1 AAAAATTAAAGTTCAAGTACCACATTGAACATTATG
* *
14927100 AAAAATTAAATTTGAAGTACCACATTGAACATT
1 AAAAATTAAAGTTCAAGTACCACATTGAACATT
14927133 TTAACAGGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 16 0.55
36 13 0.45
ACGTcount: A:0.46, C:0.13, G:0.12, T:0.29
Consensus pattern (36 bp):
AAAAATTAAAGTTCAAGTACCACATTGAACATTATG
Found at i:14933698 original size:45 final size:46
Alignment explanation
Indices: 14933634--14933760 Score: 159
Period size: 46 Copynumber: 2.8 Consensus size: 46
14933624 GATCGAAGTG
* *
14933634 TGCCATGGTGTCTTTTAACCATAGTCTTATTTA-TTCTCGTCT-TAA
1 TGCCATAGTGTCTTTTAACCATAGTCTTATTCATTTCTCGT-TGTAA
* * * **
14933679 TGCCATAGTGTCTTTTAACCATGGTCTTACTCATTTTTCGTTGTGT
1 TGCCATAGTGTCTTTTAACCATAGTCTTATTCATTTCTCGTTGTAA
*
14933725 TGCCATAGTGTCTTTCAACCATAGTCTTATTCATTT
1 TGCCATAGTGTCTTTTAACCATAGTCTTATTCATTT
14933761 GTTTCATGAT
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
45 30 0.43
46 40 0.57
ACGTcount: A:0.19, C:0.20, G:0.14, T:0.46
Consensus pattern (46 bp):
TGCCATAGTGTCTTTTAACCATAGTCTTATTCATTTCTCGTTGTAA
Found at i:14942781 original size:45 final size:45
Alignment explanation
Indices: 14942708--14942817 Score: 168
Period size: 45 Copynumber: 2.4 Consensus size: 45
14942698 GATACTATAG
*
14942708 TGTCTTTCAG-CTATGGTCTTACTCGATAGAATCGTAATGCCATAA
1 TGTCTTTCAGTC-ATGGTCTTACTCGATAGAATCATAATGCCATAA
* * *
14942753 TGTTTTTCAGTCATGGTCTTACTTGATAGAATCATGATGCCATAA
1 TGTCTTTCAGTCATGGTCTTACTCGATAGAATCATAATGCCATAA
14942798 TGTCTTTCAGTCATGGTCTT
1 TGTCTTTCAGTCATGGTCTT
14942818 GCTCATTTTT
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
45 58 0.98
46 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.18, T:0.40
Consensus pattern (45 bp):
TGTCTTTCAGTCATGGTCTTACTCGATAGAATCATAATGCCATAA
Found at i:14945328 original size:49 final size:49
Alignment explanation
Indices: 14945272--14945443 Score: 244
Period size: 49 Copynumber: 3.6 Consensus size: 49
14945262 TATTTGAATA
14945272 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
14945321 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * * *
14945368 AATGTGAAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
*
14945417 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
14945444 TCCCGAAGGG
Statistics
Matches: 109, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
47 53 0.49
48 1 0.01
49 55 0.50
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.28
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:14945351 original size:47 final size:48
Alignment explanation
Indices: 14945272--14945443 Score: 231
Period size: 47 Copynumber: 3.6 Consensus size: 48
14945262 TATTTGAATA
14945272 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
14945321 AATGTGAAAGTG-TATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* * * * *
14945368 AATGTGAAAGTGTATATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCAATGTGATG
* *
14945417 GATGTGAAAGTG-TATAAATGTGATAAG
1 AATGTGAAAGTGATATATATGTGATAAG
14945444 TCCCGAAGGG
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
47 57 0.53
49 51 0.47
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.28
Consensus pattern (48 bp):
AATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCAATGTGATG
Found at i:14948328 original size:19 final size:17
Alignment explanation
Indices: 14948280--14948337 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 17
14948270 TTGGTTAGGA
14948280 TTTGTT-TTTATTATTTT
1 TTTGTTATTT-TTATTTT
*
14948297 ATT-TTATTTTTATTTT
1 TTTGTTATTTTTATTTT
14948313 TTTGTTATTCTGTTATTTT
1 TTTGTTATT-T-TTATTTT
14948332 TTTGTT
1 TTTGTT
14948338 TGAAAAAAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 11 0.31
17 10 0.29
18 1 0.03
19 13 0.37
ACGTcount: A:0.12, C:0.02, G:0.07, T:0.79
Consensus pattern (17 bp):
TTTGTTATTTTTATTTT
Done.