Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 52 of 322
Found at i:16064639 original size:47 final size:47
Alignment explanation
Indices: 16064572--16064788 Score: 255
Period size: 47 Copynumber: 4.6 Consensus size: 47
16064562 CATGCGAACG
16064572 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
* *
16064619 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAAATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
* ** * * *
16064666 TCCGAAATCGTTGAGTTGAGTCTAAGTTCACT--TATG-GA-T-GCGAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGAAATGTAACTAG-GCA
** *
16064710 TGTCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
*
16064759 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA
16064789 CTTATGGATG
Statistics
Matches: 140, Mismatches: 21, Indels: 18
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.02
45 2 0.01
46 28 0.20
47 100 0.71
48 2 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCATGAAATGTAACTAGGCA
Found at i:16064716 original size:93 final size:93
Alignment explanation
Indices: 16064619--16064834 Score: 324
Period size: 93 Copynumber: 2.3 Consensus size: 93
16064609 TAACTAGGCA
*
16064619 TCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGAAATGTAACTAGGCATCCGAAATCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAAATCGTTGAGTTG
* *
16064684 AGTCTAAGTTCACTTATGGATGCGAATG
66 AGTCCAAGTTCACTTATGGATGCGAACG
* * **
16064712 TCCGAACTCGTTGAGTTGAGTCCGAGTTTGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAAATCGTTGAGTTG
*
16064777 AGTCCGAGTTCACTTATGGATGCGAACG
66 AGTCCAAGTTCACTTATGGATGCGAACG
* * * *
16064805 CCCGAGCTCATTGAGTTGACTCCGAGTTCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCG
16064835 CTTATGGGCG
Statistics
Matches: 110, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 110 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAAATCGTTGAGTTG
AGTCCAAGTTCACTTATGGATGCGAACG
Found at i:16064774 original size:140 final size:140
Alignment explanation
Indices: 16064522--16064787 Score: 451
Period size: 140 Copynumber: 1.9 Consensus size: 140
16064512 AGGATATTTG
* *
16064522 GGCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
1 GGCATCCGAAATCGTTGAGTTGAGTCTAAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
*
16064587 TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTTCGAGTTCGTGA
66 TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA
16064652 AATGTAACTA
131 AATGTAACTA
* *
16064662 GGCATCCGAAATCGTTGAGTTGAGTCTAAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAAATCGTTGAGTTGAGTCTAAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
** * *
16064727 TTGAGTCCGAGTTTGTGAGATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTC
66 TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTC
16064788 ACTTATGGAT
Statistics
Matches: 117, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
140 117 1.00
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.30
Consensus pattern (140 bp):
GGCATCCGAAATCGTTGAGTTGAGTCTAAGTTCACTTATGCATGCGAACGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCATGAAATGTAACTAGGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA
AATGTAACTA
Found at i:16067170 original size:30 final size:28
Alignment explanation
Indices: 16067136--16067202 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 28
16067126 GTAGTATCTT
16067136 GGGTTTCTTTAT-TCTAGATTTCTTTATTCC
1 GGGTTTCTTTATCT-TAGATTTCTTT-TT-C
* *
16067166 GGGTTTCTCTATCTTGGATTTCTTTTTC
1 GGGTTTCTTTATCTTAGATTTCTTTTTC
*
16067194 GGTTTTCTT
1 GGGTTTCTT
16067203 GTTATCTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
28 8 0.25
29 2 0.06
30 21 0.66
31 1 0.03
ACGTcount: A:0.09, C:0.16, G:0.16, T:0.58
Consensus pattern (28 bp):
GGGTTTCTTTATCTTAGATTTCTTTTTC
Found at i:16073948 original size:34 final size:34
Alignment explanation
Indices: 16073910--16073981 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
16073900 TAATTTAATT
16073910 ACTTAACTATTCTTTAATATATATATTCATATTA
1 ACTTAACTATTCTTTAATATATATATTCATATTA
16073944 ACTTAACTATTCTTTAATATATATATTCATATTA
1 ACTTAACTATTCTTTAATATATATATTCATATTA
16073978 ACTT
1 ACTT
16073982 CTTAAATCTT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.38, C:0.12, G:0.00, T:0.50
Consensus pattern (34 bp):
ACTTAACTATTCTTTAATATATATATTCATATTA
Found at i:16073970 original size:16 final size:16
Alignment explanation
Indices: 16073917--16073971 Score: 60
Period size: 16 Copynumber: 3.3 Consensus size: 16
16073907 ATTACTTAAC
16073917 TATTCTTTAATATATA
1 TATTCTTTAATATATA
16073933 TATTCATATTAACT-TA-A
1 TATTC-T-TTAA-TATATA
16073950 CTATTCTTTAATATATA
1 -TATTCTTTAATATATA
16073967 TATTC
1 TATTC
16073972 ATATTAACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
15 1 0.03
16 16 0.48
17 4 0.12
18 11 0.33
19 1 0.03
ACGTcount: A:0.36, C:0.11, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTCTTTAATATATA
Found at i:16078514 original size:3 final size:3
Alignment explanation
Indices: 16078495--16078547 Score: 56
Period size: 3 Copynumber: 18.3 Consensus size: 3
16078485 TTAGGGTTAG
* * * *
16078495 AGA AAA AGA AAA AGA AGA AGA AG- AGG AGG AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
16078542 A-A AGA A
1 AGA AGA A
16078548 AAAAAATGGA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
2 4 0.09
3 39 0.91
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:16078546 original size:17 final size:17
Alignment explanation
Indices: 16078495--16078547 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
16078485 TTAGGGTTAG
* *
16078495 AGAAAAAGAAAAAGAAGA
1 AGAAGAAGAAGAA-AAGA
* * *
16078513 AGAAGAGGAGGAGAAGA
1 AGAAGAAGAAGAAAAGA
16078530 AGAAGAAGAAGAAAAGA
1 AGAAGAAGAAGAAAAGA
16078547 A
1 A
16078548 AAAAAATGGA
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (17 bp):
AGAAGAAGAAGAAAAGA
Found at i:16079239 original size:23 final size:24
Alignment explanation
Indices: 16079192--16079239 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
16079182 GATGAAAAAA
*
16079192 ACACATATGTATTTCTCAATTCTC
1 ACACATATGTATTTCTCAATACTC
* *
16079216 ACACATTTGT-TTTTTCAATACTC
1 ACACATATGTATTTCTCAATACTC
16079239 A
1 A
16079240 TATGTTAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.29, C:0.23, G:0.04, T:0.44
Consensus pattern (24 bp):
ACACATATGTATTTCTCAATACTC
Found at i:16079721 original size:21 final size:21
Alignment explanation
Indices: 16079688--16079743 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
16079678 GTTGATGCAG
*
16079688 CTTGTTGAGTTGGGGTA-CTCT
1 CTTGCTGAGTTGGGGTAGCT-T
*
16079709 CTTGCTGATTTGGGGTAGCTT
1 CTTGCTGAGTTGGGGTAGCTT
*
16079730 GTTGCTGAGTTGGG
1 CTTGCTGAGTTGGG
16079744 ACACCAACTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 28 0.93
22 2 0.07
ACGTcount: A:0.09, C:0.12, G:0.38, T:0.41
Consensus pattern (21 bp):
CTTGCTGAGTTGGGGTAGCTT
Found at i:16080547 original size:22 final size:22
Alignment explanation
Indices: 16080519--16080561 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
16080509 CATGTGACCA
*
16080519 GCAACATGAAGTCAGACTAAAG
1 GCAACATGAAGTCAGAATAAAG
16080541 GCAACATGAAGTCAGAATAAA
1 GCAACATGAAGTCAGAATAAA
16080562 TGCATCAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.16, G:0.21, T:0.14
Consensus pattern (22 bp):
GCAACATGAAGTCAGAATAAAG
Found at i:16082443 original size:39 final size:39
Alignment explanation
Indices: 16082373--16082590 Score: 303
Period size: 39 Copynumber: 5.5 Consensus size: 39
16082363 ACAAAGCATG
* * *
16082373 CGGGACTTTAAGCCCGGATATAATACCAGCAC-AAAGCCTA
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* *
16082413 CGGGACTTTAGCCCGGATATAACACTAGCACGACTGCCTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
16082453 CGAGAGTTAGCCCGGATATAGCACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
16082492 CGGGACATAGCCCGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
16082531 CGGGACTTAGCCTGGATATAACACCAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
16082570 CGGGACTTAGCCCTGATATAA
1 CGGGACTTAGCCCGGATATAA
16082591 TTCTCCATTA
Statistics
Matches: 159, Mismatches: 18, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 141 0.89
40 18 0.11
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.19
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:16086598 original size:40 final size:39
Alignment explanation
Indices: 16086554--16086706 Score: 220
Period size: 40 Copynumber: 3.9 Consensus size: 39
16086544 GGAAAAAGTG
16086554 GTGCGAAGTACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 GTGCG-AGTACTATATCCGGGCTAAGTCCCGAAGGCATTT
16086594 GTGCGAAGTACTATATCCGGGCTAAGTCCCGAAGGCATTT
1 GTGCG-AGTACTATATCCGGGCTAAGTCCCGAAGGCATTT
*
16086634 GTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
1 GTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTT
* **
16086674 GAGC-AGTAGCTATATCC-GGCTAAACCCCGAAGG
1 GTGCGAGTA-CTATATCCGGGCTAAGTCCCGAAGG
16086707 TACTTGGTTG
Statistics
Matches: 106, Mismatches: 5, Indels: 6
0.91 0.04 0.05
Matches are distributed among these distances:
38 16 0.15
39 11 0.10
40 79 0.75
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.23
Consensus pattern (39 bp):
GTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTT
Found at i:16088846 original size:15 final size:15
Alignment explanation
Indices: 16088828--16088857 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16088818 CTTTCAGATG
*
16088828 CATCACTACTAGACA
1 CATCACTACCAGACA
16088843 CATCACTACCAGACA
1 CATCACTACCAGACA
16088858 TGTTTTCTTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.37, G:0.07, T:0.17
Consensus pattern (15 bp):
CATCACTACCAGACA
Found at i:16089251 original size:48 final size:48
Alignment explanation
Indices: 16089197--16089305 Score: 200
Period size: 48 Copynumber: 2.3 Consensus size: 48
16089187 GCAGATATAC
*
16089197 ACAATAAACATCAGTTTGATAATGGCATCCATACAATGGCAAATACAA
1 ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAAATACAA
*
16089245 ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAGATACAA
1 ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAAATACAA
16089293 ACAATAAACATCA
1 ACAATAAACATCA
16089306 CGCACATGGC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.48, C:0.19, G:0.11, T:0.22
Consensus pattern (48 bp):
ACAATAAACATCAATTTGATAATGGCATCCATACAATGGCAAATACAA
Found at i:16089366 original size:6 final size:6
Alignment explanation
Indices: 16089357--16089510 Score: 71
Period size: 6 Copynumber: 24.7 Consensus size: 6
16089347 AAATAACCCT
* * * * * *
16089357 AAATCA AAATCC AAATCG AAATCA AAATCT AAATCTA AAGT-T AAATCG
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATC-A AAATCA AAATCA
* * ** **
16089405 AGATCG AAATTG AAATCA AAATCA AAATCA AAATCA GTGAGTGTTTCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA ---A---AATCA
* * *
16089453 AAAT-A GAAATCA AAATCG AAAT-A GAAATCA AAATCA AAATCA GAATCG
1 AAATCA -AAATCA AAATCA AAATCA -AAATCA AAATCA AAATCA AAATCA
16089501 AAATCA AAAT
1 AAATCA AAAT
16089511 TGAAATAGAA
Statistics
Matches: 112, Mismatches: 24, Indels: 24
0.70 0.15 0.15
Matches are distributed among these distances:
5 4 0.04
6 98 0.88
7 5 0.04
9 2 0.02
12 3 0.03
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (6 bp):
AAATCA
Found at i:16095790 original size:38 final size:38
Alignment explanation
Indices: 16095707--16095896 Score: 238
Period size: 38 Copynumber: 4.9 Consensus size: 38
16095697 GAATCTAGTC
* * * *
16095707 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACGAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
16095747 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
*
16095785 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATATT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
16095823 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
* * *
16095861 TCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
16095897 CACATCAAAT
Statistics
Matches: 135, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
37 1 0.01
38 98 0.73
39 10 0.07
40 26 0.19
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (38 bp):
ACCAGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:16103744 original size:44 final size:43
Alignment explanation
Indices: 16103606--16103772 Score: 160
Period size: 42 Copynumber: 3.9 Consensus size: 43
16103596 CTCGTACAAC
* * * * *
16103606 GCCAACGTCTCAGACGTGGTCTTACATGTAATCACATATCGAT
1 GCCAACGTCCCAAACATGGTCTTACATGAAATCACATATTGAT
* * * * * *
16103649 -CC-ACTATCCCAGACAGGGTCTTACACGAACTCATATA-TGAT
1 GCCAAC-GTCCCAAACATGGTCTTACATGAAATCACATATTGAT
* * *
16103690 GCTAATGTCCCAAACATGGTCTTACATGTAAATCACAAATTGAT
1 GCCAACGTCCCAAACATGGTCTTACATG-AAATCACATATTGAT
*
16103734 GCCAACGTCCCAAACGTGGTCTTACATGAAATCACATAT
1 GCCAACGTCCCAAACATGGTCTTACATGAAATCACATAT
16103773 CAGAATCCTA
Statistics
Matches: 97, Mismatches: 22, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
41 5 0.05
42 45 0.46
43 18 0.19
44 29 0.30
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (43 bp):
GCCAACGTCCCAAACATGGTCTTACATGAAATCACATATTGAT
Found at i:16104407 original size:62 final size:62
Alignment explanation
Indices: 16104331--16104462 Score: 264
Period size: 62 Copynumber: 2.1 Consensus size: 62
16104321 CATTTTTACT
16104331 AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
1 AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
16104393 AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
1 AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
16104455 AAAAATCA
1 AAAAATCA
16104463 TCAAGCTTTC
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.31
Consensus pattern (62 bp):
AAAAATCACTTAATTAAACATGAAAATCTATTAACACATACTTCTTTTTCATCATCAAAGAC
Found at i:16110158 original size:12 final size:12
Alignment explanation
Indices: 16110141--16110165 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
16110131 AGAGAATGAT
16110141 TGCAAAATACAA
1 TGCAAAATACAA
16110153 TGCAAAATACAA
1 TGCAAAATACAA
16110165 T
1 T
16110166 TAACATGAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.56, C:0.16, G:0.08, T:0.20
Consensus pattern (12 bp):
TGCAAAATACAA
Found at i:16115424 original size:20 final size:21
Alignment explanation
Indices: 16115399--16115447 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
16115389 TGAAACAGGG
* * *
16115399 AACACGCTCGTGTGG-TGGGC
1 AACACGCCCGTATGGATAGGC
16115419 AACACGCCCGTATGGATAGGC
1 AACACGCCCGTATGGATAGGC
16115440 AACACGCC
1 AACACGCC
16115448 TGTGTGGAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 13 0.52
21 12 0.48
ACGTcount: A:0.24, C:0.31, G:0.31, T:0.14
Consensus pattern (21 bp):
AACACGCCCGTATGGATAGGC
Found at i:16115455 original size:21 final size:21
Alignment explanation
Indices: 16115399--16115455 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
16115389 TGAAACAGGG
*
16115399 AACACG-CTCGTGTGG-TGGGC
1 AACACGCCT-GTGTGGATAGGC
* *
16115419 AACACGCCCGTATGGATAGGC
1 AACACGCCTGTGTGGATAGGC
16115440 AACACGCCTGTGTGGA
1 AACACGCCTGTGTGGA
16115456 ACTTGAACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 11 0.37
21 19 0.63
ACGTcount: A:0.23, C:0.26, G:0.33, T:0.18
Consensus pattern (21 bp):
AACACGCCTGTGTGGATAGGC
Found at i:16116766 original size:50 final size:49
Alignment explanation
Indices: 16116653--16116779 Score: 150
Period size: 49 Copynumber: 2.6 Consensus size: 49
16116643 CATCAAGTCA
*
16116653 ATGCCATGTCCCAAACATGGTCTTACACTAACTATCGAAATCGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCGAGGCCG
* * * * * *
16116702 ACGCCATGTCCCAGACATGGTCTTACATTAGCTCTC-ACATATTCG-TGTCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGA-A-A-TCGAGGCCG
16116752 ATGCCATGTCCCAGACATGGTCTTACAC
1 ATGCCATGTCCCAGACATGGTCTTACAC
16116780 AACACCTCTA
Statistics
Matches: 66, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
48 1 0.02
49 32 0.48
50 30 0.45
51 3 0.05
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCGAGGCCG
Found at i:16116898 original size:46 final size:45
Alignment explanation
Indices: 16116809--16117011 Score: 157
Period size: 46 Copynumber: 4.4 Consensus size: 45
16116799 ATGCTATTTC
* * * *
16116809 CCAGACATGGTCTTACACT-G-ACACATCTCGTAGCT-GATACATGTT
1 CCAGACAT-GTCTTACACTGGCTCTCATCTCG-AGTTCGATGCATG-T
*
16116854 CCAGACATGTCTTACACTGGCT-TACATCTCGAGGTCGATGCATGT
1 CCAGACATGTCTTACACTGGCTCT-CATCTCGAGTTCGATGCATGT
* * * *
16116899 CCCAGATATGTCTTACACTAGCTCTCGTCTC-AATTCTGATGCCATGT
1 -CCAGACATGTCTTACACTGGCTCTCATCTCGAGTTC-GATG-CATGT
* * *
16116946 CCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGTTCGGTGCATGT
1 CC-AGACAT-GTCTTACACTGGCTCTCAT-CTCGAGTTCGATGCATGT
16116993 CCTAGACATGTCTTACACT
1 CC-AGACATGTCTTACACT
16117012 AGCACACAAA
Statistics
Matches: 130, Mismatches: 16, Indels: 23
0.77 0.09 0.14
Matches are distributed among these distances:
44 10 0.08
45 16 0.12
46 55 0.42
47 25 0.19
48 20 0.15
49 4 0.03
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.32
Consensus pattern (45 bp):
CCAGACATGTCTTACACTGGCTCTCATCTCGAGTTCGATGCATGT
Found at i:16121013 original size:137 final size:139
Alignment explanation
Indices: 16120855--16121113 Score: 321
Period size: 137 Copynumber: 1.9 Consensus size: 139
16120845 CACTTTTTGA
** ** * *
16120855 TTTTTTTAACACATTAGCTTCTTTGTTTAGATGGTTAAATGTTAGTGGTTTT-GTCTTTGAATCT
1 TTTTTTTAACACATTAGCTTCTTTACTTAGATGGTTAAATAATAGTGATTTTATTC-TTGAATCT
* ** *
16120919 CTAGTTTGATTC-TCTTT-TACTCACATTTG-TTTTTTTATTCCAT-TTGTTTCAAGCTTAATTT
65 CAAGTTTGATTCAT-TTTCTAAGCACATTTGCATTTTTTATTCCATGTT-TTTCAAGCTTAATTT
16120980 TTTTTATATAAC
128 TTTTTATATAAC
** * *
16120992 TTTTTTTAACATGTTAGCTTCTTTACTTAGATGGTTAATTAATAGTGATTTTATTCTTGAGTCTC
1 TTTTTTTAACACATTAGCTTCTTTACTTAGATGGTTAAATAATAGTGATTTTATTCTTGAATCTC
*
16121057 AAGTTTGATTCATTTTCTAAGCACATTTGCATTTTTTATTTCATGTTTTTCAAGCTT
66 AAGTTTGATTCATTTTCTAAGCACATTTGCATTTTTTATTCCATGTTTTTCAAGCTT
16121114 TTTTTAATTA
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
137 65 0.64
138 13 0.13
139 22 0.22
140 2 0.02
ACGTcount: A:0.22, C:0.12, G:0.12, T:0.54
Consensus pattern (139 bp):
TTTTTTTAACACATTAGCTTCTTTACTTAGATGGTTAAATAATAGTGATTTTATTCTTGAATCTC
AAGTTTGATTCATTTTCTAAGCACATTTGCATTTTTTATTCCATGTTTTTCAAGCTTAATTTTTT
TTATATAAC
Found at i:16121531 original size:196 final size:196
Alignment explanation
Indices: 16121197--16121609 Score: 817
Period size: 196 Copynumber: 2.1 Consensus size: 196
16121187 ACTATTTTAT
16121197 TTATAAAATCAAATAATTATTGTTAATTATATAATAAAAATATATTTTTGATAAAATTGATATTT
1 TTATAAAATCAAATAATTATTGTTAATTATATAATAAAAATATATTTTTGATAAAATTGATATTT
16121262 ATCATTATGTTAAATATATTTTATTTTTTAAAACATCAACTAATTTTTGATATAATTTTCTTTAT
66 ATCATTATGTTAAATATATTTTATTTTTTAAAACATCAACTAATTTTTGATATAATTTTCTTTAT
*
16121327 ATATAATATTTATATGTCAAATTTTTATTTTTTCCATCTATATTGTGGGTATGATAAATTCTAAT
131 ATATAATATTTATATGTCAAATTTTTATTTTTTCCACCTATATTGTGGGTATGATAAATTCTAAT
16121392 A
196 A
16121393 TTATAAAATCAAATAATTATTGTTAATTATATAATAAAAATATATTTTTGATAAAATTGATATTT
1 TTATAAAATCAAATAATTATTGTTAATTATATAATAAAAATATATTTTTGATAAAATTGATATTT
16121458 ATCATTATGTTAAATATATTTTATTTTTTAAAACATCAACTAATTTTTGATATAATTTTCTTTAT
66 ATCATTATGTTAAATATATTTTATTTTTTAAAACATCAACTAATTTTTGATATAATTTTCTTTAT
16121523 ATATAATATTTATATGTCAAATTTTTATTTTTTCCACCTATATTGTGGGTATGATAAATTCTAAT
131 ATATAATATTTATATGTCAAATTTTTATTTTTTCCACCTATATTGTGGGTATGATAAATTCTAAT
16121588 A
196 A
16121589 TTATAAAATCAAATAATTATT
1 TTATAAAATCAAATAATTATT
16121610 TCAAATATTT
Statistics
Matches: 216, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
196 216 1.00
ACGTcount: A:0.39, C:0.06, G:0.05, T:0.49
Consensus pattern (196 bp):
TTATAAAATCAAATAATTATTGTTAATTATATAATAAAAATATATTTTTGATAAAATTGATATTT
ATCATTATGTTAAATATATTTTATTTTTTAAAACATCAACTAATTTTTGATATAATTTTCTTTAT
ATATAATATTTATATGTCAAATTTTTATTTTTTCCACCTATATTGTGGGTATGATAAATTCTAAT
A
Found at i:16121874 original size:16 final size:16
Alignment explanation
Indices: 16121834--16121875 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
16121824 ATATTTGGAA
*
16121834 ATAATTATAAGATTTT
1 ATAATTAAAAGATTTT
*
16121850 ATAAATAAAAGA-TTT
1 ATAATTAAAAGATTTT
16121865 ATTAATTAAAA
1 A-TAATTAAAA
16121876 ATATGAATTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (16 bp):
ATAATTAAAAGATTTT
Found at i:16123548 original size:35 final size:35
Alignment explanation
Indices: 16123509--16123579 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
16123499 TTTAGACTCT
*
16123509 TGCAAGTAAGTGATTTTGATGGTCTTCCTTGATGA
1 TGCAAGTAAGAGATTTTGATGGTCTTCCTTGATGA
* *
16123544 TGCAAGTAAGAGATTTTTATGGTCTTTCTTGATGA
1 TGCAAGTAAGAGATTTTGATGGTCTTCCTTGATGA
16123579 T
1 T
16123580 TTTTTTGTAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.42
Consensus pattern (35 bp):
TGCAAGTAAGAGATTTTGATGGTCTTCCTTGATGA
Found at i:16124381 original size:48 final size:47
Alignment explanation
Indices: 16124324--16124510 Score: 225
Period size: 48 Copynumber: 3.9 Consensus size: 47
16124314 TCGACATTTA
16124324 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCAT
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GCCTCAT
* * * *
16124372 TATGTGAGCTAGTGTATGACCATGTTTGGGACATGGCATCGTCCTTGA-
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG-CC-TCAT
* * *
16124420 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAC-CGAT
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GC-CTC-AT
*
16124469 ATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
16124511 GCATCTTGCC
Statistics
Matches: 121, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
47 1 0.01
48 79 0.65
49 5 0.04
50 36 0.30
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.27
Consensus pattern (47 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGCCTCAT
Found at i:16124439 original size:96 final size:97
Alignment explanation
Indices: 16124275--16124510 Score: 296
Period size: 96 Copynumber: 2.4 Consensus size: 97
16124265 GATACTAGGG
* * * * * *
16124275 TTATGTGAGCCAGTATAAGACCATATTTTGAACATGACATCGACATTTATATGAGAGCTAGTGTA
1 TTATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTA
*
16124340 AGACCATGTCTGGGACATGGCATCAGC-CTC-A
66 AGACCATGTCTGGAACATGGCATCAGCAC-CGA
* * * * *
16124371 TTATGTGAGCTAGTGTATGACCATGTTTGGGACATGGCATCGTCCTTGATATGTGAGCTAGTGTA
1 TTATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTA
* *
16124436 AGACCATGTTTGGAACATGGCATCGGCACCGA
66 AGACCATGTCTGGAACATGGCATCAGCACCGA
* *
16124468 TATATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 T-TATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
16124511 GCATCTTGCC
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
96 79 0.66
97 3 0.03
98 37 0.31
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (97 bp):
TTATGTGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACATTGATATGAGAGCTAGTGTA
AGACCATGTCTGGAACATGGCATCAGCACCGA
Found at i:16134131 original size:19 final size:20
Alignment explanation
Indices: 16134099--16134136 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
16134089 AATCTTCGCT
* *
16134099 AGCCTTCTCTATTT-TTTTG
1 AGCCTTCGCCATTTCTTTTG
16134118 AGCCTTCGCCATTTCTTTT
1 AGCCTTCGCCATTTCTTTT
16134137 TAGTGTATTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.11, C:0.26, G:0.11, T:0.53
Consensus pattern (20 bp):
AGCCTTCGCCATTTCTTTTG
Found at i:16134936 original size:27 final size:27
Alignment explanation
Indices: 16134900--16135067 Score: 185
Period size: 27 Copynumber: 6.2 Consensus size: 27
16134890 GGCTTAAATG
*
16134900 ATGACTGAAATACCCCTACAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* *
16134927 ATGACCGAAATACCCCCATAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
*
16134954 ATGA-TCGAAATACCCCTATAAGGTAAA
1 ATGACT-GAAATACCCCTATAGGGTAAA
* * * *
16134981 ATGACTGTAATGCCCCTGTATGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* * *
16135008 ATAACTGTAATACCCTTATAGGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
* * * *
16135035 ATCACTGTAATACCCCTGTAAGGTAAA
1 ATGACTGAAATACCCCTATAGGGTAAA
16135062 ATGACT
1 ATGACT
16135068 AATTTTCCCT
Statistics
Matches: 119, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
27 118 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.20, G:0.17, T:0.24
Consensus pattern (27 bp):
ATGACTGAAATACCCCTATAGGGTAAA
Found at i:16137268 original size:13 final size:13
Alignment explanation
Indices: 16137250--16137276 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16137240 TATATCTGTA
16137250 TCTGTATCTATTT
1 TCTGTATCTATTT
16137263 TCTGTATCTATTT
1 TCTGTATCTATTT
16137276 T
1 T
16137277 GGGGTGGGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.07, T:0.63
Consensus pattern (13 bp):
TCTGTATCTATTT
Found at i:16146288 original size:55 final size:55
Alignment explanation
Indices: 16146204--16146313 Score: 159
Period size: 55 Copynumber: 2.0 Consensus size: 55
16146194 ATGTGATTAC
* * *
16146204 GTGTAAGACCATGTCTGGGACATTGGCATCGTTAT-TCAATTACATGTAAGACCAT
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATGT-AATAACATGTAAGACCAT
* *
16146259 GTGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAACATGTAAGACCAT
1 GTGTAAGACCATGTCTGGGACAGTGGCATCGATATGTAATAACATGTAAGACCAT
16146314 ATTTGGGATA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
55 48 0.98
56 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (55 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGATATGTAATAACATGTAAGACCAT
Found at i:16156152 original size:26 final size:26
Alignment explanation
Indices: 16156123--16156172 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
16156113 ATTCTACACC
* * *
16156123 TAGGGGTATTTTGGTCATTTTTCCCT
1 TAGGGGCATTTCGGTAATTTTTCCCT
16156149 TAGGGGCATTTCGGTAATTTTTCC
1 TAGGGGCATTTCGGTAATTTTTCC
16156173 ATAATTACAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.14, C:0.16, G:0.24, T:0.46
Consensus pattern (26 bp):
TAGGGGCATTTCGGTAATTTTTCCCT
Found at i:16156516 original size:29 final size:29
Alignment explanation
Indices: 16156483--16156554 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
16156473 AATCGTATTC
16156483 ATATGGCCCATTAGGCCCAAATCAC-TTGT
1 ATATGGCCCATTAGGCCCAAATCACATT-T
16156512 ATATGGCCCATTAGGCCCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATTT
* *
16156541 ATATAGCCCGTTAG
1 ATATGGCCCATTAG
16156555 ACCTAGTCAC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
29 38 0.95
30 2 0.05
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATTT
Found at i:16156662 original size:18 final size:19
Alignment explanation
Indices: 16156639--16156674 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
16156629 ATGGGCCCAA
16156639 TAGCCCA-TCAGGCCCATT
1 TAGCCCATTCAGGCCCATT
*
16156657 TAGCCCATTCTGGCCCAT
1 TAGCCCATTCAGGCCCAT
16156675 ATGGCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.19, C:0.39, G:0.17, T:0.25
Consensus pattern (19 bp):
TAGCCCATTCAGGCCCATT
Found at i:16156814 original size:16 final size:16
Alignment explanation
Indices: 16156789--16156825 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
16156779 AAACTTTTGA
*
16156789 CTTTTTGGTATTTCGG
1 CTTTTCGGTATTTCGG
16156805 CTTTTCGGTATTTCGG
1 CTTTTCGGTATTTCGG
16156821 CTTTT
1 CTTTT
16156826 GCCAATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.05, C:0.16, G:0.22, T:0.57
Consensus pattern (16 bp):
CTTTTCGGTATTTCGG
Found at i:16157920 original size:16 final size:16
Alignment explanation
Indices: 16157899--16157930 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
16157889 AAGTTTAGGA
16157899 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
16157915 TTTCAGGATTTTTGGG
1 TTTCAGGATTTTTGGG
16157931 GCGTTACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.06, G:0.31, T:0.50
Consensus pattern (16 bp):
TTTCAGGATTTTTGGG
Found at i:16159881 original size:24 final size:24
Alignment explanation
Indices: 16159854--16159930 Score: 72
Period size: 24 Copynumber: 3.2 Consensus size: 24
16159844 TTACTAATCA
16159854 ATCAATCAATGCAACAACATTAGT
1 ATCAATCAATGCAACAACATTAGT
*
16159878 ATC-AT-AGA-G-AGAAAATCGATCTAGT
1 ATCAATCA-ATGCA-ACAA-C-AT-TAGT
16159903 ATCAATCAATGCAACAACATTAGT
1 ATCAATCAATGCAACAACATTAGT
16159927 ATCA
1 ATCA
16159931 TAGAGAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 18
0.68 0.03 0.29
Matches are distributed among these distances:
21 1 0.02
22 5 0.12
23 4 0.10
24 13 0.31
25 9 0.21
26 4 0.10
27 5 0.12
28 1 0.02
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.25
Consensus pattern (24 bp):
ATCAATCAATGCAACAACATTAGT
Found at i:16164164 original size:17 final size:17
Alignment explanation
Indices: 16164139--16164179 Score: 73
Period size: 17 Copynumber: 2.4 Consensus size: 17
16164129 AGGAAGAAAG
16164139 GAAACAGAGAATGAGAC
1 GAAACAGAGAATGAGAC
*
16164156 GAAAGAGAGAATGAGAC
1 GAAACAGAGAATGAGAC
16164173 GAAACAG
1 GAAACAG
16164180 GGGAAAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.54, C:0.10, G:0.32, T:0.05
Consensus pattern (17 bp):
GAAACAGAGAATGAGAC
Found at i:16166017 original size:46 final size:46
Alignment explanation
Indices: 16165965--16166284 Score: 543
Period size: 46 Copynumber: 7.0 Consensus size: 46
16165955 AGTGTGCTCT
16165965 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
16166011 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
16166057 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
16166103 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
16166149 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* **
16166195 GTGATATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * * * *
16166241 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCA
16166285 TCATGTCAAA
Statistics
Matches: 264, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
45 1 0.00
46 263 1.00
ACGTcount: A:0.39, C:0.15, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:16168022 original size:43 final size:43
Alignment explanation
Indices: 16167961--16168048 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 43
16167951 TGAATAAAAC
*
16167961 ATGTTATATCATAACTCAATTTGGCCCGAAAACCAATTACACA
1 ATGTTATATCACAACTCAATTTGGCCCGAAAACCAATTACACA
16168004 ATGTTATATCACAACTCAATTTGGCCCGAAAACCAATTACACA
1 ATGTTATATCACAACTCAATTTGGCCCGAAAACCAATTACACA
16168047 AT
1 AT
16168049 CGCCAACTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.40, C:0.24, G:0.09, T:0.27
Consensus pattern (43 bp):
ATGTTATATCACAACTCAATTTGGCCCGAAAACCAATTACACA
Found at i:16168349 original size:42 final size:42
Alignment explanation
Indices: 16168238--16168391 Score: 213
Period size: 42 Copynumber: 3.7 Consensus size: 42
16168228 TACTGTACCA
* * **
16168238 ATGCCATATCCTAGATATGGTCTTACATGTTATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * *
16168280 ATGTCAATAACCCAGCTATGGTCTTACACGAAATCTCATATCG
1 ATG-CCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
*
16168323 ACGCCATATCCCAGATATGGTCTTACACGAAATCTCATA-CG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
16168364 ATGCCATATCCCA-ATATGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
16168392 TAGTCTTAGT
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
40 15 0.15
41 14 0.14
42 36 0.36
43 34 0.34
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:16175644 original size:46 final size:49
Alignment explanation
Indices: 16175577--16175675 Score: 132
Period size: 46 Copynumber: 2.1 Consensus size: 49
16175567 ACAGGACAAA
* *
16175577 AATGAGCCATGTAAGTCCATATCAG-A-A-ATATGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATCAGAATATATATGGCATTGGAGACAGG
* *
16175623 AATGAGCCATGTATGCCCATATTAGATATATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATCAGA-ATATATATGGCATTGGAGACAGG
16175673 AAT
1 AAT
16175676 AATTCATGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
46 22 0.49
48 1 0.02
49 1 0.02
50 21 0.47
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.26
Consensus pattern (49 bp):
AATGAGCCATGTAAGCCCATATCAGAATATATATGGCATTGGAGACAGG
Found at i:16178783 original size:40 final size:40
Alignment explanation
Indices: 16178713--16178810 Score: 155
Period size: 40 Copynumber: 2.5 Consensus size: 40
16178703 AAACCAAGTA
* *
16178713 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATG
16178752 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATG
16178792 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
16178811 TTATCATCCG
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
39 14 0.25
40 41 0.75
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATG
Found at i:16186163 original size:40 final size:40
Alignment explanation
Indices: 16186093--16186350 Score: 466
Period size: 40 Copynumber: 6.5 Consensus size: 40
16186083 AAACCAAGTA
* * *
16186093 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
16186132 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16186172 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16186212 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16186252 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16186292 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16186332 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
16186351 TTATCATCCG
Statistics
Matches: 214, Mismatches: 3, Indels: 3
0.97 0.01 0.01
Matches are distributed among these distances:
39 14 0.07
40 200 0.93
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:16199673 original size:40 final size:40
Alignment explanation
Indices: 16199608--16199822 Score: 358
Period size: 40 Copynumber: 5.4 Consensus size: 40
16199598 CGGATGTAAC
* * ** *
16199608 AACCAGCACGAATGCCTTCGAGACTTAACCTAGTAATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
16199648 AACTCGCACGAATGCCTTCGGGACTTATCCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
16199688 AACCCGCACGAATGCCTTCTGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
16199728 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
16199768 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
16199808 AACCCGCACGAATGC
1 AACCCGCACGAATGC
16199823 TATGCACATA
Statistics
Matches: 164, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 164 1.00
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:16202400 original size:56 final size:56
Alignment explanation
Indices: 16202314--16202425 Score: 215
Period size: 56 Copynumber: 2.0 Consensus size: 56
16202304 AGCATGGACT
*
16202314 TAATTTGCCTTTCCTACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
1 TAATTTGCCTTTCCCACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
16202370 TAATTTGCCTTTCCCACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
1 TAATTTGCCTTTCCCACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
16202426 ACCCCTTATC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.32, C:0.28, G:0.07, T:0.33
Consensus pattern (56 bp):
TAATTTGCCTTTCCCACCAAATCTCAAAACCTTTTTCCATGGAGACACTTTCAAAA
Found at i:16225933 original size:46 final size:44
Alignment explanation
Indices: 16225808--16225970 Score: 150
Period size: 46 Copynumber: 3.5 Consensus size: 44
16225798 GTGTCGAGGC
* *
16225808 CATGTCCCAGACATGGTCTTACACTAACACATC-TCGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTTAGCCGATG
* *
16225853 CATGTCCCAGACATGTCTTACACTGGCTA-ACGTCTTGAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGC-ACTCGTCTT-A-GCCGATG
* * * *
16225899 CATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGTCGGTG
1 CATGTCCCAGACATGTCTTACACTAGCACTCGTCT-TA-GCCGATG
*
16225945 CCATGTCCCAGACTTGGTCTTACACT
1 -CATGTCCCAGACAT-GTCTTACACT
16225971 GGCTCACACC
Statistics
Matches: 97, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
43 1 0.01
44 14 0.14
45 17 0.18
46 43 0.44
47 12 0.12
48 10 0.10
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTAGCACTCGTCTTAGCCGATG
Found at i:16228561 original size:14 final size:14
Alignment explanation
Indices: 16228542--16228572 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
16228532 CTTGTAGAAT
16228542 TAATTTGGAAAATC
1 TAATTTGGAAAATC
16228556 TAATTTGGAAAATC
1 TAATTTGGAAAATC
16228570 TAA
1 TAA
16228573 GTAATTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (14 bp):
TAATTTGGAAAATC
Found at i:16246041 original size:42 final size:42
Alignment explanation
Indices: 16245927--16246047 Score: 129
Period size: 42 Copynumber: 2.9 Consensus size: 42
16245917 ATACTCTTAG
* *
16245927 TACCGTATCAATGCCATATCCCAGATATGGTCTTATATGAAA
1 TACCATATCGATGCCATATCCCAGATATGGTCTTATATGAAA
* * * *
16245969 TACCATATCGACGCCATGTCCCTGACATGGTCTTATATGAAA
1 TACCATATCGATGCCATATCCCAGATATGGTCTTATATGAAA
* * *
16246011 T-CACACA-CTGATGCCACATCCCAGATATGGTTTTATA
1 TAC-CATATC-GATGCCATATCCCAGATATGGTCTTATA
16246048 CGGAATCTTA
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
41 2 0.03
42 62 0.97
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.30
Consensus pattern (42 bp):
TACCATATCGATGCCATATCCCAGATATGGTCTTATATGAAA
Found at i:16251710 original size:20 final size:19
Alignment explanation
Indices: 16251685--16251723 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
16251675 AAGCTAATAT
*
16251685 AAATAAAATATCAATTTAAA
1 AAAT-AAATATCAAGTTAAA
*
16251705 AAATAATTATCAAGTTAAA
1 AAATAAATATCAAGTTAAA
16251724 TTAAGTAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.62, C:0.05, G:0.03, T:0.31
Consensus pattern (19 bp):
AAATAAATATCAAGTTAAA
Found at i:16251825 original size:21 final size:22
Alignment explanation
Indices: 16251801--16251841 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
16251791 AAATCAATTT
*
16251801 TATTTATCAAA-TTTAAGTTAA
1 TATTTATAAAATTTTAAGTTAA
*
16251822 TATTTGTAAAATTTTAAGTT
1 TATTTATAAAATTTTAAGTT
16251842 TAAGATAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.51
Consensus pattern (22 bp):
TATTTATAAAATTTTAAGTTAA
Found at i:16255086 original size:42 final size:43
Alignment explanation
Indices: 16254996--16255186 Score: 269
Period size: 43 Copynumber: 4.5 Consensus size: 43
16254986 GAAAAATGCT
* *
16254996 GCTATAGGACATGAGCTTTAGCGGCACTTTTCCCACAAACGCC
1 GCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCC
* * * *
16255039 ACTATAGGACATGAGCTTTAGCAGCAC-TTTCCCACAAACGCC
1 GCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCC
16255081 GCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCC
1 GCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCC
* * * * *
16255124 TCTATAAAACATGACCTTTAGCGGCGCTTTTCCCAAAAACG-T
1 GCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCC
16255166 GCTATAGAACATGACCTTTAG
1 GCTATAGAACATGACCTTTAG
16255187 AGGCGATTTG
Statistics
Matches: 134, Mismatches: 13, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
42 57 0.43
43 77 0.57
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (43 bp):
GCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCC
Found at i:16255143 original size:85 final size:85
Alignment explanation
Indices: 16254987--16255186 Score: 276
Period size: 85 Copynumber: 2.3 Consensus size: 85
16254977 GTTTATGTGG
* * * **
16254987 AAAAATGCTGCTATAGGACATGAGCTTTAGCGGCACTTTTCCCACAAACGCCACTATAGGACATG
1 AAAAACGC-GCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCACTATAAAACATG
*
16255052 AGCTTTAGCAGCAC-TTTCCC
65 ACCTTTAGCAGCACTTTTCCC
* *
16255072 ACAAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCTCTATAAAACATG
1 AAAAACG-CGCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCACTATAAAACATG
* *
16255137 ACCTTTAGCGGCGCTTTTCCC
65 ACCTTTAGCAGCACTTTTCCC
*
16255158 AAAAACGTGCTATAGAACATGACCTTTAG
1 AAAAACGCGCTATAGAACATGACCTTTAG
16255187 AGGCGATTTG
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
85 88 0.87
86 13 0.13
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.24
Consensus pattern (85 bp):
AAAAACGCGCTATAGAACATGACCTTTAGCGGCACTTTTCCCACAAACGCCACTATAAAACATGA
CCTTTAGCAGCACTTTTCCC
Found at i:16255367 original size:42 final size:43
Alignment explanation
Indices: 16255270--16255467 Score: 236
Period size: 43 Copynumber: 4.6 Consensus size: 43
16255260 TTATGTGGAA
* * *
16255270 AAACGCTGCTATAGGACATGAGCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCCAC
* * * *
16255313 AAACGCCACTATAGGACATGAGCTTTAGCAGCAC-TTTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCCAC
*
16255355 AAACGTCGCTATAGAACATGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCCAC
* * * **
16255398 AAACGCCTCTATAAAACATGACCTTTAGTGGCGTTTTTCCCAC
1 AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCCAC
* * * *
16255441 AAATGCCGTTAAAGAACATAACCTTTA
1 AAACGCCGCTATAGAACATGACCTTTA
16255468 AAAAAATTAT
Statistics
Matches: 134, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
42 37 0.28
43 97 0.72
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (43 bp):
AAACGCCGCTATAGAACATGACCTTTAGCGGCACTTTTCCCAC
Found at i:16255367 original size:281 final size:282
Alignment explanation
Indices: 16254909--16255439 Score: 983
Period size: 281 Copynumber: 1.9 Consensus size: 282
16254899 TACTAAAACT
*
16254909 ATTTGCGGCGTTTTGATAAGTGCTACAAAAAAAAAACAGCTATAGTTAACGCCGCTGAAATTTGT
1 ATTTGCGGCGTTTTGATAAGTGCTAC-AAAAAAAAACAGCTATAGTTAACGCCGCTAAAATTTGT
*
16254974 GGCGTTTATGTGGAAAAATGCTGCTATAGGACATGAGCTTTAGCGGCACTTTTCCCACAAACGCC
65 GGCGTTTATGTGGAAAAACGCTGCTATAGGACATGAGCTTTAGCGGCACTTTTCCCACAAACGCC
16255039 ACTATAGGACATGAGCTTTAGCAGCACTTTCCCACAAACGCCGCTATAGAACATGACCTTTAGCG
130 ACTATAGGACATGAGCTTTAGCAGCACTTTCCCACAAACGCCGCTATAGAACATGACCTTTAGCG
16255104 GCACTTTTCCCACAAACGCCTCTATAAAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGTGCT
195 GCACTTTTCCCACAAACGCCTCTATAAAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGTGCT
16255169 ATAGAACATGACCTTTAGAGGCG
260 ATAGAACATGACCTTTAGAGGCG
* *
16255192 ATTTGCGGCGTTTTGATAAGTGCTGC-AAAAAAAATAGCTATAGTTAACGCCGCTAAAATTTGTG
1 ATTTGCGGCGTTTTGATAAGTGCTACAAAAAAAAACAGCTATAGTTAACGCCGCTAAAATTTGTG
16255256 GCGTTTATGTGGAAAAACGCTGCTATAGGACATGAGCTTTAGCGGCACTTTTCCCACAAACGCCA
66 GCGTTTATGTGGAAAAACGCTGCTATAGGACATGAGCTTTAGCGGCACTTTTCCCACAAACGCCA
*
16255321 CTATAGGACATGAGCTTTAGCAGCACTTTCCCACAAACGTCGCTATAGAACATGACCTTTAGCGG
131 CTATAGGACATGAGCTTTAGCAGCACTTTCCCACAAACGCCGCTATAGAACATGACCTTTAGCGG
* *
16255386 CACTTTTCCCACAAACGCCTCTATAAAACATGACCTTTAGTGGCGTTTTTCCCA
196 CACTTTTCCCACAAACGCCTCTATAAAACATGACCTTTAGCGGCGCTTTTCCCA
16255440 CAAATGCCGT
Statistics
Matches: 241, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
281 216 0.90
283 25 0.10
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.27
Consensus pattern (282 bp):
ATTTGCGGCGTTTTGATAAGTGCTACAAAAAAAAACAGCTATAGTTAACGCCGCTAAAATTTGTG
GCGTTTATGTGGAAAAACGCTGCTATAGGACATGAGCTTTAGCGGCACTTTTCCCACAAACGCCA
CTATAGGACATGAGCTTTAGCAGCACTTTCCCACAAACGCCGCTATAGAACATGACCTTTAGCGG
CACTTTTCCCACAAACGCCTCTATAAAACATGACCTTTAGCGGCGCTTTTCCCAAAAACGTGCTA
TAGAACATGACCTTTAGAGGCG
Found at i:16255938 original size:15 final size:15
Alignment explanation
Indices: 16255918--16255948 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
16255908 ATTGATTAAG
16255918 CTGCTAATGAATATT
1 CTGCTAATGAATATT
16255933 CTGCTAATGAATATT
1 CTGCTAATGAATATT
16255948 C
1 C
16255949 CTTTGACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (15 bp):
CTGCTAATGAATATT
Found at i:16256220 original size:43 final size:43
Alignment explanation
Indices: 16256148--16256238 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
16256138 CACATTGCAA
* * * * *
16256148 GGTAATAAAACATACAATGCATTTTCTTAATTAAGTAAATCTT
1 GGTAATAAAACATACAATACATGTACTTAATCAAGGAAATCTT
* *
16256191 GGTAATAAAAGATATAATACATGTACTTAATCAAGGAAATCTT
1 GGTAATAAAACATACAATACATGTACTTAATCAAGGAAATCTT
16256234 -GTAAT
1 GGTAAT
16256239 GAACTCAAAG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 5 0.12
43 36 0.88
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (43 bp):
GGTAATAAAACATACAATACATGTACTTAATCAAGGAAATCTT
Found at i:16258682 original size:40 final size:40
Alignment explanation
Indices: 16258620--16258706 Score: 140
Period size: 40 Copynumber: 2.2 Consensus size: 40
16258610 TTTTTTGCCA
*
16258620 CATTTTTCAAAAAGTGTCGCTAATGCTCGATCTATAGTGG
1 CATTTTTCAAAAAGTGTCGCTAATGATCGATCTATAGTGG
*
16258660 CGTTTTTCAAAAAGTG-CAGCTAATGATCGATCTATAGTGG
1 CATTTTTCAAAAAGTGTC-GCTAATGATCGATCTATAGTGG
16258700 CATTTTT
1 CATTTTT
16258707 TTCATAAACG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.02
40 42 0.98
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (40 bp):
CATTTTTCAAAAAGTGTCGCTAATGATCGATCTATAGTGG
Found at i:16259338 original size:22 final size:22
Alignment explanation
Indices: 16259313--16259363 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
16259303 AAATTCTATA
*
16259313 TTATTGAAATAAAATGTGAATG
1 TTATTGAAATAAAATATGAATG
16259335 TTATTGAAATAAAATATGAATG
1 TTATTGAAATAAAATATGAATG
16259357 TTATTGA
1 TTATTGA
16259364 GTACGACACT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (22 bp):
TTATTGAAATAAAATATGAATG
Found at i:16259542 original size:42 final size:42
Alignment explanation
Indices: 16259467--16259592 Score: 166
Period size: 42 Copynumber: 3.0 Consensus size: 42
16259457 AGGGTTACTA
*
16259467 AGATGACGTGTAAGACCATATCTGGGATATGGCATTGATATG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATTGATATG
* * *
16259509 AGACTT-CGTGTAAGACCATAGCT-GGCTATTGGCATCGATATG
1 AGA-TTACGTGTAAGACCATATCTGGGATA-TGGCATTGATATG
* *
16259551 AGATTACATGTAAGACCATATCTGGGATATGGCATTGGTATG
1 AGATTACGTGTAAGACCATATCTGGGATATGGCATTGATATG
16259593 GTACTGCGAG
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
41 6 0.08
42 60 0.85
43 5 0.07
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (42 bp):
AGATTACGTGTAAGACCATATCTGGGATATGGCATTGATATG
Found at i:16261824 original size:27 final size:27
Alignment explanation
Indices: 16261794--16261971 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
16261784 ATATTGAGTC
* * * *
16261794 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
16261821 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16261848 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
16261876 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16261903 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16261930 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16261957 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16261972 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16261933 original size:82 final size:81
Alignment explanation
Indices: 16261815--16261970 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
16261805 TGCTATATAA
* *
16261815 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
16261880 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
16261897 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
16261961 CACTTAGTGC
65 CACTTAGTGC
16261971 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16269887 original size:27 final size:27
Alignment explanation
Indices: 16269857--16270034 Score: 187
Period size: 27 Copynumber: 6.6 Consensus size: 27
16269847 ATATTGAGCC
* * * *
16269857 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* * *
16269884 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
*
16269911 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAGTCA-AAT
** * *
16269939 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
16269966 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
16269993 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
16270020 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
16270035 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:16269996 original size:82 final size:81
Alignment explanation
Indices: 16269878--16270033 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
16269868 TGCTATATAA
* * *
16269878 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCA-AATCGCA
16269943 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
16269960 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
16270024 CACTTAGTGC
65 CACTTAGTGC
16270034 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 18 0.27
82 48 0.73
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:16296767 original size:16 final size:16
Alignment explanation
Indices: 16296746--16296802 Score: 55
Period size: 16 Copynumber: 3.6 Consensus size: 16
16296736 TTAATCACTT
16296746 TAATATTAAATTAATA
1 TAATATTAAATTAATA
* *
16296762 TAATATT-TATTAAGA
1 TAATATTAAATTAATA
*
16296777 TAAATATTAGATTGAAT-
1 T-AATATTAAATT-AATA
16296794 TAATATTAA
1 TAATATTAA
16296803 GATAATCACT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
15 7 0.21
16 20 0.61
17 4 0.12
18 2 0.06
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (16 bp):
TAATATTAAATTAATA
Found at i:16297673 original size:35 final size:35
Alignment explanation
Indices: 16297627--16297693 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
16297617 AATCATGGAG
16297627 TCAGTTCACAGGAAGTACCATGATTGAAAACTTGA
1 TCAGTTCACAGGAAGTACCATGATTGAAAACTTGA
16297662 TCAGTTCACAGGAAGTACCATGATTGAAAACT
1 TCAGTTCACAGGAAGTACCATGATTGAAAACT
16297694 CCTTATTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (35 bp):
TCAGTTCACAGGAAGTACCATGATTGAAAACTTGA
Found at i:16298706 original size:12 final size:12
Alignment explanation
Indices: 16298689--16298716 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
16298679 ACATACGCCT
16298689 GTGTGCCAGGCC
1 GTGTGCCAGGCC
16298701 GTGTGCCAGGCC
1 GTGTGCCAGGCC
16298713 GTGT
1 GTGT
16298717 ACTTGGCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.29, G:0.43, T:0.21
Consensus pattern (12 bp):
GTGTGCCAGGCC
Found at i:16301134 original size:27 final size:26
Alignment explanation
Indices: 16301099--16301210 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
16301089 AGCATGGCTG
* *
16301099 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
16301125 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
16301153 CCAGAACAGAAATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
16301180 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
16301207 CCAG
1 CCAG
16301211 GACGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 53 0.70
28 17 0.22
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:16301191 original size:54 final size:54
Alignment explanation
Indices: 16301099--16301210 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
16301089 AGCATGGCTG
* *
16301099 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
* * *
16301153 CCAGAACAGAAATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
16301207 CCAG
1 CCAG
16301211 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (54 bp):
CCAGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCA
Found at i:16301982 original size:24 final size:24
Alignment explanation
Indices: 16301955--16302025 Score: 106
Period size: 24 Copynumber: 3.0 Consensus size: 24
16301945 CTAGATTTCC
**
16301955 TCCCTTATCTGCTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
16301979 TCCCTCATCAACTCCTAAATCCTA
1 TCCCTTATCAACTCCTAAATCCTA
*
16302003 TCCCTTATCAACTCTTAAATCCT
1 TCCCTTATCAACTCCTAAATCCT
16302026 CTCCTGACAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 42 1.00
ACGTcount: A:0.25, C:0.38, G:0.01, T:0.35
Consensus pattern (24 bp):
TCCCTTATCAACTCCTAAATCCTA
Found at i:16304166 original size:35 final size:35
Alignment explanation
Indices: 16304101--16304280 Score: 182
Period size: 35 Copynumber: 5.1 Consensus size: 35
16304091 TACTTACTTG
* *
16304101 TATGGCCGAATACT-CAAGATTCATTATATCATCACA
1 TATGGCCAAATA-TACAAG-TTCAATATATCATCACA
* * **
16304137 TATGGCCCAATATACAAGTACAATATATCATCATT
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * *
16304172 TATGACCGAATATACAAGCTCAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * * * *
16304207 TGTAGTCAAATATTCAAGTTTAATATAACATTACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
16304242 TATGGCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
16304277 TATG
1 TATG
16304281 TACATACCTA
Statistics
Matches: 115, Mismatches: 28, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
35 100 0.87
36 15 0.13
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATATCATCACA
Found at i:16308538 original size:42 final size:40
Alignment explanation
Indices: 16308381--16308530 Score: 158
Period size: 42 Copynumber: 3.6 Consensus size: 40
16308371 AGTTTACGTG
* *
16308381 AAGACCATATCTAGGATATGGCATC-ATTATGAGATTTCGTGT
1 AAGACCATATCTGGGATATGGCATCGA-TATGAGA--TCATGT
** * *
16308423 AAGAATATGTCTGGGACATGGCATCGATATGAGAATCATGT
1 AAGACCATATCTGGGATATGGCATCGATATGAG-ATCATGT
* *
16308464 AAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCATGT
1 AAGACCATATCTGGGATA-TGGCATCGATATGAGAT--CATGT
16308507 AAGACCATATCTGGGATATGGCAT
1 AAGACCATATCTGGGATATGGCAT
16308531 TGGTATGATT
Statistics
Matches: 89, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
41 19 0.21
42 47 0.53
43 23 0.26
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.28
Consensus pattern (40 bp):
AAGACCATATCTGGGATATGGCATCGATATGAGATCATGT
Found at i:16315840 original size:79 final size:81
Alignment explanation
Indices: 16315731--16315913 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
16315721 TACTCGTTCA
* *
16315731 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
16315794 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
**
16315811 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
16315874 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
16315890 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
16315914 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 59 0.66
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:16315913 original size:40 final size:40
Alignment explanation
Indices: 16315710--16315913 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
16315700 CGGAATTTAA
** *
16315710 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
16315750 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
16315790 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
16315829 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
16315869 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
16315909 CCGGA
1 CCGGA
16315914 CATCATTCGA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:16326380 original size:58 final size:59
Alignment explanation
Indices: 16326310--16326423 Score: 205
Period size: 59 Copynumber: 1.9 Consensus size: 59
16326300 GTGTCTTTTA
16326310 CAACACCAACTAAG-TTTTCC-AACTAAGTAATACGGAATGTTTTGAACGCTTCGATCTG
1 CAACACCAACTAAGTTTTTCCAAACTAAGTAATACGGAAT-TTTTGAACGCTTCGATCTG
16326368 CAACACCAACTAAGTTTTTCCAAACTAAGTAATACGGAATTTTTGAACGCTTCGAT
1 CAACACCAACTAAGTTTTTCCAAACTAAGTAATACGGAATTTTTGAACGCTTCGAT
16326424 GTGGCGCATC
Statistics
Matches: 54, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
58 14 0.26
59 22 0.41
60 18 0.33
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (59 bp):
CAACACCAACTAAGTTTTTCCAAACTAAGTAATACGGAATTTTTGAACGCTTCGATCTG
Found at i:16338423 original size:47 final size:45
Alignment explanation
Indices: 16338372--16338496 Score: 144
Period size: 47 Copynumber: 2.8 Consensus size: 45
16338362 CGATGATAGT
* *
16338372 TAGTGTAAGACCATTTTTAGGACATGGCATCGACTTGAGATGTGAGC
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGT--GC
* * * *
16338419 TAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGT
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGTGC
* * *
16338464 TAGTGTAAGACC-TATCTGGGACACGGCATCGAC
1 TAGTGTAAGACCATGTCTAGGACATGGCATCGAC
16338497 ACAGATGGAC
Statistics
Matches: 69, Mismatches: 9, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
44 18 0.26
45 13 0.19
47 38 0.55
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (45 bp):
TAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGAGATGTGC
Found at i:16341040 original size:23 final size:23
Alignment explanation
Indices: 16341010--16341053 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
16341000 TGAGTAAGAA
16341010 AATGTGATAAAAATCATTTTTTG
1 AATGTGATAAAAATCATTTTTTG
16341033 AATGTGATAAAAATCATTTTT
1 AATGTGATAAAAATCATTTTT
16341054 CGAGCCTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (23 bp):
AATGTGATAAAAATCATTTTTTG
Found at i:16345813 original size:27 final size:27
Alignment explanation
Indices: 16345631--16345802 Score: 245
Period size: 27 Copynumber: 6.4 Consensus size: 27
16345621 CCCAAAATAT
**
16345631 GTAAAATGATTGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
* * *
16345658 GTAAAATCACCATAATACCCCTGTATG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
16345685 GTAAAATGACCGTAATACCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
16345712 GTAAAATGACCATAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
** *
16345739 GTAAAATGATTGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
*
16345766 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTGTAGG
16345793 GTAAAATGAC
1 GTAAAATGAC
16345803 TGTGAAACCC
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 126 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTGTAGG
Found at i:16345826 original size:54 final size:54
Alignment explanation
Indices: 16345631--16345826 Score: 252
Period size: 54 Copynumber: 3.6 Consensus size: 54
16345621 CCCAAAATAT
* * * *
16345631 GTAAAATGATTGTAATACCCCTGTAGGGTAAAATCACCATAATACCCCTGTATG
1 GTAAAATGACTGTAATACCCCAGTAGGGTAAAATGACCATAATACCCCTGTAGG
* **
16345685 GTAAAATGACCGTAATACCCTTGTAGGGTAAAATGACCATAATACCCCTGTAGG
1 GTAAAATGACTGTAATACCCCAGTAGGGTAAAATGACCATAATACCCCTGTAGG
* * *
16345739 GTAAAATGATTGTAATACCCCTA-TAGGGTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACTGTAATACCCC-AGTAGGGTAAAATGACCATAATACCCCTGTAGG
* *
16345793 GTAAAATGACTGTGAA-ACCCCAGTATGGCAAAAT
1 GTAAAATGACTGT-AATACCCCAGTAGGGTAAAAT
16345827 AATGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.01
54 122 0.98
55 2 0.02
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (54 bp):
GTAAAATGACTGTAATACCCCAGTAGGGTAAAATGACCATAATACCCCTGTAGG
Found at i:16345826 original size:81 final size:81
Alignment explanation
Indices: 16345643--16345826 Score: 217
Period size: 81 Copynumber: 2.3 Consensus size: 81
16345633 AAAATGATTG
* * * *** * * *
16345643 TAATACCCCTGTAGGGTAAAATCACCATAATACCCCTGTATGGTAAAATGACCGTAATACCCTTG
1 TAATACCCCAGTAGGGCAAAATGATTGTAATACCCCTATAGGGTAAAATGACCGTAATACCCCTG
16345708 TAGGGTAAAATGACCA
66 TAGGGTAAAATGACCA
* * *
16345724 TAATACCCCTGTAGGGTAAAATGATTGTAATACCCCTATAGGGTAAAATGACCGTAATGCCCCTG
1 TAATACCCCAGTAGGGCAAAATGATTGTAATACCCCTATAGGGTAAAATGACCGTAATACCCCTG
**
16345789 TAGGGTAAAATGACTG
66 TAGGGTAAAATGACCA
*
16345805 TGAA-ACCCCAGTATGGCAAAAT
1 T-AATACCCCAGTAGGGCAAAAT
16345827 AATGAGTAGC
Statistics
Matches: 89, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
81 87 0.98
82 2 0.02
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (81 bp):
TAATACCCCAGTAGGGCAAAATGATTGTAATACCCCTATAGGGTAAAATGACCGTAATACCCCTG
TAGGGTAAAATGACCA
Found at i:16346239 original size:28 final size:28
Alignment explanation
Indices: 16346207--16346272 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
16346197 ATTACACTGT
* *
16346207 ACTGTTACTGTATAGGGCATAGGCCCAC
1 ACTGTTACTGAATAGGGCATAAGCCCAC
* *
16346235 ACTGTTACTGAATAGGGCTTAAGCCCAG
1 ACTGTTACTGAATAGGGCATAAGCCCAC
16346263 ACTGTTACTG
1 ACTGTTACTG
16346273 CATGCATTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (28 bp):
ACTGTTACTGAATAGGGCATAAGCCCAC
Found at i:16349903 original size:54 final size:54
Alignment explanation
Indices: 16349823--16349929 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
16349813 CCCTAAAATA
*
16349823 GGTAAAATAACTGTAATACTCCTGTAGGGTAAAATAACCATAATACCCCTATAG
1 GGTAAAATAACTATAATACTCCTGTAGGGTAAAATAACCATAATACCCCTATAG
* * * * *
16349877 GGTAAAATGACTATAATGC-CCTTGTAGGGTAAAATGACCGTGATACCCCTATA
1 GGTAAAATAACTATAATACTCC-TGTAGGGTAAAATAACCATAATACCCCTATA
16349930 TGGCGAAATG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
53 2 0.04
54 44 0.96
ACGTcount: A:0.37, C:0.19, G:0.18, T:0.26
Consensus pattern (54 bp):
GGTAAAATAACTATAATACTCCTGTAGGGTAAAATAACCATAATACCCCTATAG
Found at i:16349914 original size:27 final size:26
Alignment explanation
Indices: 16349823--16349911 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 26
16349813 CCCTAAAATA
*
16349823 GGTAAAATAACTGTAATACTCCTGTAG
1 GGTAAAATAACTATAATAC-CCTGTAG
* *
16349850 GGTAAAATAACCATAATACCCCTATAG
1 GGTAAAATAACTATAATA-CCCTGTAG
* *
16349877 GGTAAAATGACTATAATGCCCTTGTAG
1 GGTAAAATAACTATAATACCC-TGTAG
16349904 GGTAAAAT
1 GGTAAAAT
16349912 GACCGTGATA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
26 3 0.06
27 49 0.92
28 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (26 bp):
GGTAAAATAACTATAATACCCTGTAG
Found at i:16358956 original size:50 final size:46
Alignment explanation
Indices: 16358885--16359006 Score: 127
Period size: 46 Copynumber: 2.6 Consensus size: 46
16358875 TGTCTTCAAC
** * *
16358885 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC----ATATATCTAAT
* * * *
16358935 ATGGGCTTACATGGCTCATTCCTATCTCCAAAGCCGTATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
*
16358981 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
16359007 CTGTCCTGTC
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
46 32 0.52
50 29 0.48
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATCTAAT
Found at i:16363300 original size:21 final size:21
Alignment explanation
Indices: 16363231--16363300 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
16363221 TGATATGAAC
*
16363231 TCATTGAGTTGCGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
* **
16363252 TCA-TGATATATGTGGCATCTGAAC
1 TCATTGA-GT-TGTGG--TCTGAGT
16363276 TCATTGAGTTGTGGTCTGAGT
1 TCATTGAGTTGTGGTCTGAGT
16363297 TCAT
1 TCAT
16363301 GATGGATGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 3 0.08
21 13 0.35
22 4 0.11
23 5 0.14
24 9 0.24
25 3 0.08
ACGTcount: A:0.20, C:0.14, G:0.27, T:0.39
Consensus pattern (21 bp):
TCATTGAGTTGTGGTCTGAGT
Found at i:16368633 original size:69 final size:68
Alignment explanation
Indices: 16368555--16368689 Score: 189
Period size: 68 Copynumber: 2.0 Consensus size: 68
16368545 TAATTAAACT
* ** *
16368555 TAATCACTTTAATATTAAATTAATATAATATTTATTAAGATAAATATTAGATTGAATTTAATATT
1 TAATCACTTTAATATTAAATTAATAAAATA-CAATTAAGATAAATATTAAATTGAATTTAATATT
16368620 AAGA
65 AAGA
* * * *
16368624 TAATCACTTTAATCTTAAATTAATAAAATACAATTAAGATAAGTCTTAAATTTAATTTAATATTA
1 TAATCACTTTAATATTAAATTAATAAAATACAATTAAGATAAATATTAAATTGAATTTAATATTA
16368689 A
66 A
16368690 ACTATTAAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
68 30 0.52
69 28 0.48
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.42
Consensus pattern (68 bp):
TAATCACTTTAATATTAAATTAATAAAATACAATTAAGATAAATATTAAATTGAATTTAATATTA
AGA
Found at i:16369493 original size:35 final size:35
Alignment explanation
Indices: 16369447--16369513 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
16369437 AATCATGGAG
16369447 TCAGTTCACAGGAAGTACCATGATTGAAAACTTGA
1 TCAGTTCACAGGAAGTACCATGATTGAAAACTTGA
16369482 TCAGTTCACAGGAAGTACCATGATTGAAAACT
1 TCAGTTCACAGGAAGTACCATGATTGAAAACT
16369514 CCTTACTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (35 bp):
TCAGTTCACAGGAAGTACCATGATTGAAAACTTGA
Found at i:16373164 original size:35 final size:35
Alignment explanation
Indices: 16373099--16373275 Score: 158
Period size: 35 Copynumber: 5.0 Consensus size: 35
16373089 TACTTACTTG
* *
16373099 TATGGCCGAATACT-CAAGATTCATTATATCATCACA
1 TATGGCCAAATA-TACAAG-TTCAATATATCATCACA
* * * **
16373135 TATGGCCCAATATATAAGTACAATATATCATCATT
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * *
16373170 TATGACCGAATATACAAGCTCAATATAACATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
* * * * * * *
16373205 TGTAGTCAAATATTCAAGTTTAATATAACATTACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
*
16373240 TGTGGCCAAATATACAAGTTCAATATATCATCACA
1 TATGGCCAAATATACAAGTTCAATATATCATCACA
16373275 T
1 T
16373276 TTGTACATAC
Statistics
Matches: 111, Mismatches: 29, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
35 97 0.87
36 14 0.13
ACGTcount: A:0.41, C:0.19, G:0.10, T:0.31
Consensus pattern (35 bp):
TATGGCCAAATATACAAGTTCAATATATCATCACA
Found at i:16377427 original size:42 final size:42
Alignment explanation
Indices: 16377380--16377532 Score: 166
Period size: 42 Copynumber: 3.6 Consensus size: 42
16377370 TGAGTTTACG
* * *
16377380 TGTAAGACCATATCTAGGATATGGCATCAATATGAGATTTCG
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * *
16377422 GGTAAGAACA-AGTCTGGGACATGGCATCGATATGAGA-ATCA
1 TGTAAGACCATA-TCTGGGATATGGCATCGATATGAGATTTCA
* * **
16377463 TGTAAGACCATAGCTGGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
*
16377506 TGTAAGACCATATCCGGGATATGGCAT
1 TGTAAGACCATATCTGGGATATGGCAT
16377533 TAGTATGATT
Statistics
Matches: 90, Mismatches: 17, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
41 17 0.19
42 53 0.59
43 20 0.22
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.25
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:16381699 original size:16 final size:18
Alignment explanation
Indices: 16381673--16381706 Score: 54
Period size: 16 Copynumber: 2.0 Consensus size: 18
16381663 TTGCTGGAGA
16381673 CCTTGGCTTTGGT-TTTT
1 CCTTGGCTTTGGTATTTT
16381690 CCTT-GCTTTGGTATTTT
1 CCTTGGCTTTGGTATTTT
16381707 TTTCCTCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.03, C:0.18, G:0.21, T:0.59
Consensus pattern (18 bp):
CCTTGGCTTTGGTATTTT
Found at i:16383106 original size:27 final size:27
Alignment explanation
Indices: 16383076--16383276 Score: 285
Period size: 27 Copynumber: 7.4 Consensus size: 27
16383066 CCCTAAAATA
* *
16383076 GGTAAAATGACCATAATACCCATGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
16383103 GGTAAAATGACTGTAATACCCCTGTAA
1 GGTAAAATGACCGTAATACCCCTGTAG
16383130 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
16383157 GGTAAAATGACTGTAATACCACATGTAG
1 GGTAAAATGACCGTAATACC-CCTGTAG
** *
16383185 GGTAAAATGACTATAATACCCTTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
16383212 GGTAAAATGACCGTAATACCCCTGTAG
1 GGTAAAATGACCGTAATACCCCTGTAG
* *
16383239 GGTAAAATGACCGTGATACCCCTGTAT
1 GGTAAAATGACCGTAATACCCCTGTAG
*
16383266 GGCAAAATGAC
1 GGTAAAATGAC
16383277 GAGTAGCCGT
Statistics
Matches: 157, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
27 132 0.84
28 25 0.16
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCGTAATACCCCTGTAG
Found at i:16383273 original size:109 final size:109
Alignment explanation
Indices: 16383076--16383276 Score: 339
Period size: 109 Copynumber: 1.8 Consensus size: 109
16383066 CCCTAAAATA
*
16383076 GGTAAAATGACCATAATACCCATGTAGGGTAAAATGACTGTAATACCCCTGTAAGGTAAAATGAC
1 GGTAAAATGACCATAATACCCATGTAGGGTAAAATGACCGTAATACCCCTGTAAGGTAAAATGAC
*
16383141 CGTAATACCCCTGTAGGGTAAAATGACTGTAATACCACATGTAG
66 CGTAATACCCCTGTAGGGCAAAATGACTGTAATACCACATGTAG
* * *
16383185 GGTAAAATGACTATAATACCCTTGTAGGGTAAAATGACCGTAATACCCCTGTAGGGTAAAATGAC
1 GGTAAAATGACCATAATACCCATGTAGGGTAAAATGACCGTAATACCCCTGTAAGGTAAAATGAC
* *
16383250 CGTGATACCCCTGTATGGCAAAATGAC
66 CGTAATACCCCTGTAGGGCAAAATGAC
16383277 GAGTAGCCGT
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
109 85 1.00
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.24
Consensus pattern (109 bp):
GGTAAAATGACCATAATACCCATGTAGGGTAAAATGACCGTAATACCCCTGTAAGGTAAAATGAC
CGTAATACCCCTGTAGGGCAAAATGACTGTAATACCACATGTAG
Found at i:16383470 original size:27 final size:26
Alignment explanation
Indices: 16383413--16383496 Score: 80
Period size: 27 Copynumber: 3.2 Consensus size: 26
16383403 TTGGAGGAAG
* * *
16383413 TACTGTACTGGTGACTATGTCA-GAT
1 TACTGTACTGGTGGCTATGCCACAAT
16383438 TCACTGTTACTGGTGGCTATGCCACAAT
1 T-ACTG-TACTGGTGGCTATGCCACAAT
* * *
16383466 TACTGATACTAGTGGCTTTGCCACATT
1 TACTG-TACTGGTGGCTATGCCACAAT
16383493 TACT
1 TACT
16383497 ATTTCTGGCA
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
25 1 0.02
26 4 0.08
27 41 0.84
28 3 0.06
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (26 bp):
TACTGTACTGGTGGCTATGCCACAAT
Found at i:16417629 original size:6 final size:6
Alignment explanation
Indices: 16417620--16417667 Score: 57
Period size: 6 Copynumber: 8.3 Consensus size: 6
16417610 TAAATTGAGC
*
16417620 TTAGGT TTAGGT TTAGGT TTAGGT TTGGGT TT-GG- TT-GGT ATTAGGT
1 TTAGGT TTAGGT TTAGGT TTAGGT TTAGGT TTAGGT TTAGGT -TTAGGT
16417666 TT
1 TT
16417668 GAGTTTAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
4 4 0.11
5 2 0.05
6 29 0.76
7 3 0.08
ACGTcount: A:0.12, C:0.00, G:0.35, T:0.52
Consensus pattern (6 bp):
TTAGGT
Found at i:16422278 original size:48 final size:48
Alignment explanation
Indices: 16422214--16422327 Score: 174
Period size: 48 Copynumber: 2.4 Consensus size: 48
16422204 ATACTAGGAT
* * *
16422214 TATGAGAGCTAGTGTAAGACCATATTTGGGACATGGCATCGGCCTCGA
1 TATGTGAGCTAGTGTAAGACCATATCTAGGACATGGCATCGGCCTCGA
* *
16422262 TATGTGATCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGA
1 TATGTGAGCTAGTGTAAGACCATATCTAGGACATGGCATCGGCCTCGA
*
16422310 TATGTTAGCTAGTGTAAG
1 TATGTGAGCTAGTGTAAG
16422328 TGTAATGCCC
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 59 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (48 bp):
TATGTGAGCTAGTGTAAGACCATATCTAGGACATGGCATCGGCCTCGA
Found at i:16423568 original size:39 final size:39
Alignment explanation
Indices: 16423495--16423612 Score: 148
Period size: 40 Copynumber: 3.0 Consensus size: 39
16423485 TAATGAAGAA
* *
16423495 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTG
*
16423534 TTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTA
1 TTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTG
* * * *
16423573 TTATATCTGGGCTTAATGTCCCGCATGCTTTGTGGTGGTG
1 TTATATCCGGGC-TAAAGTCCCGCAGGCTTTGTGCTGGTG
16423613 ATTGGATTTG
Statistics
Matches: 69, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.49
40 35 0.51
ACGTcount: A:0.16, C:0.21, G:0.30, T:0.33
Consensus pattern (39 bp):
TTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGTG
Found at i:16423594 original size:40 final size:38
Alignment explanation
Indices: 16423494--16423611 Score: 146
Period size: 39 Copynumber: 3.0 Consensus size: 38
16423484 ATAATGAAGA
* *
16423494 ATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGT
1 ATTATATCCGGGCTAAGTCCCGCAGGC-TTTGTGCTGGT
*
16423533 GTTATATCCGGGCTAAAGTCCCGCAGGCTTTGTGCTGGT
1 ATTATATCCGGGCT-AAGTCCCGCAGGCTTTGTGCTGGT
* * *
16423572 ATTATATCTGGGCTTAATGTCCCGCATGCTTTGTGGTGGT
1 ATTATATCCGGGC-TAA-GTCCCGCAGGCTTTGTGCTGGT
16423612 GATTGGATTT
Statistics
Matches: 69, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
39 36 0.52
40 33 0.48
ACGTcount: A:0.17, C:0.21, G:0.29, T:0.33
Consensus pattern (38 bp):
ATTATATCCGGGCTAAGTCCCGCAGGCTTTGTGCTGGT
Found at i:16428536 original size:49 final size:49
Alignment explanation
Indices: 16428464--16428701 Score: 244
Period size: 49 Copynumber: 4.8 Consensus size: 49
16428454 TGAGGTCACG
* *
16428464 TGTGTAGTACTAATTGCAGGCTACTACGTGTACCGGATAATTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCA
* * * * * *
16428513 TGTGTAGTATTAAGTGCAGGCTACTATGCGTACCCGATAATTTCGAT-CA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TTGGTTGCA
* * ** ** *
16428562 CGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTAACG
1 --TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTTGCA
* * * *
16428614 TGTGTAGTACTAAGTGCAGGCTACTGCGTGTATCAAATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCA
* *
16428663 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
16428702 GCTTTGGCTA
Statistics
Matches: 152, Mismatches: 32, Indels: 10
0.78 0.16 0.05
Matches are distributed among these distances:
49 75 0.49
50 43 0.28
51 33 0.22
52 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTTGCA
Found at i:16430324 original size:48 final size:48
Alignment explanation
Indices: 16430248--16430484 Score: 291
Period size: 48 Copynumber: 4.9 Consensus size: 48
16430238 ATACTAGGGT
*
16430248 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGTC-GTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGG-CACTGA
* * * *
16430296 TATGTGAGCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTTA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACTGA
* * *
16430344 TATGAGAGCTACTGTAAGACCATGTCTAGGACATGGCATCGGC-CTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACT-GA
* * * *
16430392 TATGTGAGCTAGTATAAGACCATGTTTGGAACATGGCATCGACACTGATA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACTG--A
* *
16430442 TATGAGAGCCAGTGTAAGACCAT-TCTGGGACATGGCATCGGCA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
16430485 TCTTATAATT
Statistics
Matches: 160, Mismatches: 24, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
47 2 0.01
48 118 0.74
49 19 0.12
50 21 0.13
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCACTGA
Found at i:16430412 original size:96 final size:97
Alignment explanation
Indices: 16430248--16430483 Score: 361
Period size: 96 Copynumber: 2.4 Consensus size: 97
16430238 ATACTAGGGT
* * *
16430248 TATGAGAGCTAGTGTAAGACCATGTTTGGGACATGGCATCGGTCGTGATATGTGAGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CCTGATATGTGAGCTAGTATAA
* *
16430313 GACCATGTTTGGAACATGGCATCGGCA-T-TTA
65 GACCATGTTTGGAACATGGCATCGACACTGATA
* *
16430344 TATGAGAGCTACTGTAAGACCATGTCTAGGACATGGCATCGGCCTCGATATGTGAGCTAGTATAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-GATATGTGAGCTAGTATAA
16430409 GACCATGTTTGGAACATGGCATCGACACTGATA
65 GACCATGTTTGGAACATGGCATCGACACTGATA
*
16430442 TATGAGAGCCAGTGTAAGACCAT-TCTGGGACATGGCATCGGC
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
16430484 ATCTTATAAT
Statistics
Matches: 127, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
95 2 0.02
96 83 0.65
97 19 0.15
98 23 0.18
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (97 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATATGTGAGCTAGTATAAG
ACCATGTTTGGAACATGGCATCGACACTGATA
Found at i:16434101 original size:86 final size:86
Alignment explanation
Indices: 16433956--16434126 Score: 324
Period size: 86 Copynumber: 2.0 Consensus size: 86
16433946 AAGGAAATCT
* *
16433956 AGATTCGGGCTTAAATCGGGAAAATACAAGGTTATGGACTAAAATGGTAAATTGTCGTTTCTGGA
1 AGATTCGGGCTTAAATCGAGAAAATACAAGGTTATGGACTAAAATGGTAAATTGCCGTTTCTGGA
16434021 TCGAGGTAAGTTCGTATGATG
66 TCGAGGTAAGTTCGTATGATG
16434042 AGATTCGGGCTTAAATCGAGAAAATACAAGGTTATGGACTAAAATGGTAAATTGCCGTTTCTGGA
1 AGATTCGGGCTTAAATCGAGAAAATACAAGGTTATGGACTAAAATGGTAAATTGCCGTTTCTGGA
16434107 TCGAGGTAAGTTCGTATGAT
66 TCGAGGTAAGTTCGTATGAT
16434127 AATAATAATG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
86 83 1.00
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.30
Consensus pattern (86 bp):
AGATTCGGGCTTAAATCGAGAAAATACAAGGTTATGGACTAAAATGGTAAATTGCCGTTTCTGGA
TCGAGGTAAGTTCGTATGATG
Found at i:16434691 original size:49 final size:49
Alignment explanation
Indices: 16434614--16434744 Score: 199
Period size: 49 Copynumber: 2.7 Consensus size: 49
16434604 ACTATTGTGA
* *
16434614 GGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT
1 GGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
* * *
16434663 GGTCACATGAGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTATT
1 GGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
* *
16434712 GGTCGCATGTGTAGTACTAAGTGTAGGCCACTA
1 GGTCACATGTGTAGTACTAAGTGTAGGCTACTA
16434745 TGCATACTAG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 73 1.00
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGATAATT
Found at i:16436254 original size:18 final size:18
Alignment explanation
Indices: 16436231--16436266 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
16436221 TCTGCTAGGT
16436231 ATCGATCTAGTATTGATA
1 ATCGATCTAGTATTGATA
16436249 ATCGATCTAGTATTGATA
1 ATCGATCTAGTATTGATA
16436267 CTTTTCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
ATCGATCTAGTATTGATA
Found at i:16437784 original size:38 final size:37
Alignment explanation
Indices: 16437715--16437809 Score: 102
Period size: 38 Copynumber: 2.5 Consensus size: 37
16437705 TCCTAAACTG
* * *
16437715 TGACATAATTAAAATCTCTTATTAAATATGTTTAGATCA
1 TGACATAATT-AAA-CTCATATTAAATATGTTCAAATCA
*
16437754 TGACATAATTGAAACTCATATT-AATGATGTTCAAATTA
1 TGACATAATT-AAACTCATATTAAAT-ATGTTCAAATCA
16437792 TGACATAATTAAGACTCA
1 TGACATAATTAA-ACTCA
16437810 AACTAATTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
37 5 0.10
38 31 0.63
39 13 0.27
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (37 bp):
TGACATAATTAAACTCATATTAAATATGTTCAAATCA
Found at i:16450835 original size:50 final size:50
Alignment explanation
Indices: 16450760--16450861 Score: 204
Period size: 50 Copynumber: 2.0 Consensus size: 50
16450750 TCCATCTCAC
16450760 AAGGTCTCAAAATAGTATTGTAGAATTTATACATGTAAGTCTTATTTTGA
1 AAGGTCTCAAAATAGTATTGTAGAATTTATACATGTAAGTCTTATTTTGA
16450810 AAGGTCTCAAAATAGTATTGTAGAATTTATACATGTAAGTCTTATTTTGA
1 AAGGTCTCAAAATAGTATTGTAGAATTTATACATGTAAGTCTTATTTTGA
16450860 AA
1 AA
16450862 AATTTATTAA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (50 bp):
AAGGTCTCAAAATAGTATTGTAGAATTTATACATGTAAGTCTTATTTTGA
Found at i:16452524 original size:40 final size:40
Alignment explanation
Indices: 16452441--16452656 Score: 271
Period size: 40 Copynumber: 5.5 Consensus size: 40
16452431 CAACCAAGTA
** *
16452441 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
16452479 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
16452519 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
16452559 CCTTCGGGACTTAGCCCGGATATAATAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * * *
16452599 CCTTCGGG-CTTATCTCAGA-ATTAGTCACTTGCACAGATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
16452638 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
16452657 TTATCATCCG
Statistics
Matches: 155, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
38 14 0.09
39 41 0.26
40 100 0.65
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:16463872 original size:40 final size:40
Alignment explanation
Indices: 16463792--16463872 Score: 135
Period size: 40 Copynumber: 2.0 Consensus size: 40
16463782 TAAGTACTTT
**
16463792 TCCCAGCTGCCTTAAAACTCGAGAACACAACACCGTAACA
1 TCCCAGCTGCCTTAAAACTCGAGAACACAACACCACAACA
*
16463832 TCCCAGCTGCCTTGAAACTCGAGAACACAACACCACAACA
1 TCCCAGCTGCCTTAAAACTCGAGAACACAACACCACAACA
16463872 T
1 T
16463873 GTCTTCTAAG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.37, C:0.36, G:0.12, T:0.15
Consensus pattern (40 bp):
TCCCAGCTGCCTTAAAACTCGAGAACACAACACCACAACA
Found at i:16470987 original size:39 final size:39
Alignment explanation
Indices: 16470944--16471098 Score: 188
Period size: 39 Copynumber: 4.0 Consensus size: 39
16470934 GTGTGAGATA
*
16470944 TATATCCGGGCTAATTCCCGAAGGCATTTGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
*
16470983 TATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * *
16471022 TATATCTGGGCTAAGTCTCGAAGGC-TTTGTGCTGGTAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
* * * * *
16471060 TATAGCCAGGCTTAAAGTCCCGCATGC-TTTGTGGTGGTG
1 TATATCCGGGC-T-AAGTCCCGAAGGCATTTGTGCTGGTG
16471099 ATTGAATTTG
Statistics
Matches: 100, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
38 19 0.19
39 61 0.61
40 20 0.20
ACGTcount: A:0.18, C:0.20, G:0.30, T:0.32
Consensus pattern (39 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTGGTGT
Found at i:16473278 original size:49 final size:48
Alignment explanation
Indices: 16473165--16473297 Score: 169
Period size: 49 Copynumber: 2.8 Consensus size: 48
16473155 GGGATAAGAT
* *
16473165 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGC-TAGTACATTAAA
1 GCCGATGCCATGTCCCAGACA-GGTCTTACACTGGCTTAGTACATCAAA
* * * * * *
16473213 GTCGATGCCGTGTCCCAGACAAGTCTTACACTGGCTTTCGTATATCAAG
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGC-TTAGTACATCAAA
16473262 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCT
1 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCT
16473298 CTCATCTATC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
47 13 0.18
48 19 0.26
49 40 0.56
ACGTcount: A:0.23, C:0.29, G:0.23, T:0.25
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTTAGTACATCAAA
Found at i:16473318 original size:49 final size:49
Alignment explanation
Indices: 16473165--16473343 Score: 152
Period size: 49 Copynumber: 3.7 Consensus size: 49
16473155 GGGATAAGAT
* * *
16473165 GCCGACGCCATGTCCCAGACATGGTCTTACACTGGCTAGTACAT-TA--AA-
1 GCCGATGCCGTGTCCCAGACA-GGTCTTACACTGGCT-CT-CATATATCAAG
* * * *
16473213 GTCGATGCCGTGTCCCAGACAAGTCTTACACTGGCTTTCGTATATCAAG
1 GCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAAG
* * *
16473262 GCCGATGCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTATC-GG
1 GCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAAG
** * * *
16473310 TGTTGATGCTGTGTCCCAGATAGGTCCTACACTG
1 -GCCGATGCCGTGTCCCAGACAGGTCTTACACTG
16473344 ACACACAACA
Statistics
Matches: 107, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
45 2 0.02
46 3 0.03
47 14 0.13
48 21 0.20
49 67 0.63
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (49 bp):
GCCGATGCCGTGTCCCAGACAGGTCTTACACTGGCTCTCATATATCAAG
Found at i:16473472 original size:46 final size:45
Alignment explanation
Indices: 16473407--16473536 Score: 147
Period size: 46 Copynumber: 2.8 Consensus size: 45
16473397 TCCTGAGGTC
* *
16473407 GATGTATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAA-T-GCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTC--AT-AAGTGGCT
* * *
16473453 GATGCATGTCCCAGACATGTCTTACTCTGGCTCTCATAATGTGGCT
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAA-GTGGCT
* *
16473499 GATGCATGTCCCAAACATGCCTTACACTAGCTCACATA
1 GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATA
16473537 TCACCTAATG
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
43 2 0.03
44 1 0.01
45 1 0.01
46 67 0.94
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.30
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCTCTCATAAGTGGCT
Found at i:16477967 original size:28 final size:28
Alignment explanation
Indices: 16477935--16477990 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
16477925 TATTTTGAAG
16477935 TATGGTCAAAATTTAAAATTTTACCCAT
1 TATGGTCAAAATTTAAAATTTTACCCAT
*
16477963 TATGGTCAAAGTTTAAAATTTTACCCAT
1 TATGGTCAAAATTTAAAATTTTACCCAT
16477991 GATAGATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.14, G:0.09, T:0.39
Consensus pattern (28 bp):
TATGGTCAAAATTTAAAATTTTACCCAT
Found at i:16479769 original size:37 final size:37
Alignment explanation
Indices: 16479719--16479797 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
16479709 TTATTACGAA
* * *
16479719 GTCTTACCCGGACATAATCTCCACACGAAGTTATCCG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCCG
* *
16479756 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCCG
16479793 GTCTT
1 GTCTT
16479798 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCCG
Found at i:16480047 original size:47 final size:47
Alignment explanation
Indices: 16479995--16480885 Score: 1728
Period size: 47 Copynumber: 19.0 Consensus size: 47
16479985 ACATTCATCA
* * * *
16479995 CACATTCATCGCATCGGCCATTAGGCCTTATCACACATATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480042 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480089 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480136 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480183 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480230 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480277 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480324 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480371 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480418 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480465 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480512 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480559 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480606 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480653 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480700 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480747 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
16480794 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
* *
16480841 CACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
1 CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACT
16480886 CTCTTGGCTG
Statistics
Matches: 838, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 838 1.00
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CACATTCATCACATCGGCCATTAGGCCTTATTACATACATACACTTT
Found at i:16491116 original size:36 final size:36
Alignment explanation
Indices: 16491071--16491144 Score: 130
Period size: 36 Copynumber: 2.1 Consensus size: 36
16491061 CCACAACCAC
*
16491071 CCACACCGAATCTTTCTTCGTGGGTGTCAACGGTAA
1 CCACACCGAATCTTTCTTCGTGGGTGTCAAAGGTAA
*
16491107 CCACACCGAATCTTTCTTGGTGGGTGTCAAAGGTAA
1 CCACACCGAATCTTTCTTCGTGGGTGTCAAAGGTAA
16491143 CC
1 CC
16491145 CACTCACAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (36 bp):
CCACACCGAATCTTTCTTCGTGGGTGTCAAAGGTAA
Found at i:16503353 original size:13 final size:13
Alignment explanation
Indices: 16503335--16503361 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
16503325 TTAACATTTA
16503335 ACTACAATTAAAC
1 ACTACAATTAAAC
16503348 ACTACAATTAAAC
1 ACTACAATTAAAC
16503361 A
1 A
16503362 TGTTTATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.22, G:0.00, T:0.22
Consensus pattern (13 bp):
ACTACAATTAAAC
Found at i:16506191 original size:16 final size:19
Alignment explanation
Indices: 16506172--16506210 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 19
16506162 TTTTAAAATG
16506172 AAAACA-AATT-AATC-TA
1 AAAACACAATTGAATCTTA
16506188 AAAA-ACAATTGAATCTTA
1 AAAACACAATTGAATCTTA
16506206 AAAAC
1 AAAAC
16506211 TTAATGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
15 1 0.05
16 8 0.42
17 4 0.21
18 6 0.32
ACGTcount: A:0.62, C:0.13, G:0.03, T:0.23
Consensus pattern (19 bp):
AAAACACAATTGAATCTTA
Done.