Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 57 of 322
Found at i:18050899 original size:20 final size:20
Alignment explanation
Indices: 18050882--18050932 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
18050872 TTATGGCTGT
18050882 GTGCCGTTATTGTGGGCTTC
1 GTGCCGTTATTGTGGGCTTC
*
18050902 GTGCCGATATTGTGGGCTTC
1 GTGCCGTTATTGTGGGCTTC
18050922 GTGCCGATTAT
1 GTGCCG-TTAT
18050933 AGACTCGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.10, C:0.20, G:0.33, T:0.37
Consensus pattern (20 bp):
GTGCCGTTATTGTGGGCTTC
Found at i:18051003 original size:27 final size:27
Alignment explanation
Indices: 18050973--18051046 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
18050963 ATTCTGTTAA
* *
18050973 GTGGCTTTGCCACATTATCTG-ATTCTG
1 GTGGCTCTGCCACAATATCTGTA-TCTG
*
18051000 GTGGCTCTGTCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTATCTG
* **
18051027 GTGACTCTATCACAATATCT
1 GTGGCTCTGCCACAATATCT
18051047 ATTCTGGCAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
27 40 0.98
28 1 0.02
ACGTcount: A:0.20, C:0.23, G:0.19, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTATCTG
Found at i:18051219 original size:25 final size:25
Alignment explanation
Indices: 18051171--18051262 Score: 141
Period size: 25 Copynumber: 3.7 Consensus size: 25
18051161 TTGCATTCAC
* *
18051171 ATTCTGATTTTGATTCTGTTACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
*
18051196 ATAT-TGGTTCTGATTCTGTCACCTG
1 AT-TCTGATTCTGATTCTGTCACCTG
18051221 ATTCTGATTCTGATTCTGTCACCTG
1 ATTCTGATTCTGATTCTGTCACCTG
18051246 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
18051263 CATTTTGGTT
Statistics
Matches: 61, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
24 1 0.02
25 59 0.97
26 1 0.02
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTG
Found at i:18051227 original size:6 final size:6
Alignment explanation
Indices: 18051218--18051262 Score: 56
Period size: 6 Copynumber: 7.3 Consensus size: 6
18051208 ATTCTGTCAC
*
18051218 CTGATT CTGATT CTGATT CTG-TCAC CTGATT CTGATT CTGATT CT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CT
18051263 CATTTTGGTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 1 0.03
6 29 0.85
7 3 0.09
8 1 0.03
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:18056148 original size:46 final size:45
Alignment explanation
Indices: 18055961--18056174 Score: 164
Period size: 46 Copynumber: 4.6 Consensus size: 45
18055951 TGATGTGGCT
* * *
18055961 GATGCATGTCCCAGACATGTCTTACACTAGCACACATATCCGTGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACACATCT-CATGCC
* * *
18056007 GACGCCATGTCCCATACATGGTCTTACACT-G-ACACATCTCGTAGCC
1 GATG-CATGTCCCAAACAT-GTCTTACACTAGCACACATCTCAT-GCC
* * ** * * * *
18056053 GATGCATGTCCTAAACATGTCTTACACTGGCTTACGTCCCGAGGTC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACACATCTC-ATGCC
* * *
18056099 GATGTATGTCCCAAACATGTCTTACACTAGCACTCGTCTCAATGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACACATCTC-ATGCC
*
18056145 GATGCCATGTCCTC-GACATGGTCTTACACT
1 GATG-CATGTCC-CAAACAT-GTCTTACACT
18056175 GACTCTCATA
Statistics
Matches: 134, Mismatches: 25, Indels: 16
0.77 0.14 0.09
Matches are distributed among these distances:
44 10 0.07
45 16 0.12
46 63 0.47
47 24 0.18
48 21 0.16
ACGTcount: A:0.24, C:0.31, G:0.18, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCACACATCTCATGCC
Found at i:18058778 original size:20 final size:21
Alignment explanation
Indices: 18058744--18058785 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
18058734 ACATATAAAT
*
18058744 TATAATTCATAAATATTTTTC
1 TATAATTCATAAATAATTTTC
*
18058765 TATAATTTAT-AATAATTTTC
1 TATAATTCATAAATAATTTTC
18058785 T
1 T
18058786 CAAATCAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (21 bp):
TATAATTCATAAATAATTTTC
Found at i:18060398 original size:46 final size:46
Alignment explanation
Indices: 18060331--18060505 Score: 314
Period size: 46 Copynumber: 3.8 Consensus size: 46
18060321 TGTAACCCGC
* * * *
18060331 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
18060377 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
18060423 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
18060469 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
18060506 TGCTCAACCA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:18067988 original size:46 final size:46
Alignment explanation
Indices: 18067930--18068047 Score: 184
Period size: 46 Copynumber: 2.6 Consensus size: 46
18067920 TGTAACCCGC
* *
18067930 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCAGG-CGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTC-GGACATTCGCAT
* *
18067976 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
18068022 CCATAAGTGAACTCGGACTCAACTCA
1 CCATAAGTGAACTCGGACTCAACTCA
18068048 CGCCCATAAG
Statistics
Matches: 67, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
45 2 0.03
46 65 0.97
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGACATTCGCAT
Found at i:18068099 original size:75 final size:75
Alignment explanation
Indices: 18067976--18068122 Score: 233
Period size: 75 Copynumber: 2.0 Consensus size: 75
18067966 GCGTTCGCAT
* * * *
18067976 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACT
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGACATCCGCATCCATAAGTGAACTCGGACT
18068041 CAACTCACGC
66 CAACTCACGC
*
18068051 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCAGG-CGTCCGCATCCATAAGTGAACTCGGAC
1 CCATAAGCGAACTCGGACTCAACTCAACAAGCTC-GGACATCCGCATCCATAAGTGAACTCGGAC
18068115 TCAACTCA
65 TCAACTCA
18068123 ACGAGTTCGG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
75 64 0.97
76 2 0.03
ACGTcount: A:0.31, C:0.32, G:0.18, T:0.18
Consensus pattern (75 bp):
CCATAAGCGAACTCGGACTCAACTCAACAAGCTCGGACATCCGCATCCATAAGTGAACTCGGACT
CAACTCACGC
Found at i:18068118 original size:46 final size:46
Alignment explanation
Indices: 18068051--18068272 Score: 267
Period size: 46 Copynumber: 4.8 Consensus size: 46
18068041 CAACTCACGC
* * * *
18068051 CCATAAGCGAACTCGGACTCAACTCAACAAGCTCAGG-CGTCCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC-GGACATCCGCAT
18068097 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACAT-CC--G---CAT
* * *
18068147 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCAT
*
18068190 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCAT
18068236 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
18068273 TGCTCAATCA
Statistics
Matches: 156, Mismatches: 9, Indels: 22
0.83 0.05 0.12
Matches are distributed among these distances:
43 3 0.02
44 2 0.01
45 6 0.04
46 107 0.69
47 29 0.19
48 3 0.02
49 3 0.02
50 3 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATCCGCAT
Found at i:18068217 original size:93 final size:93
Alignment explanation
Indices: 18068058--18068226 Score: 286
Period size: 93 Copynumber: 1.8 Consensus size: 93
18068048 CGCCCATAAG
*
18068058 CGAACTCGGACTCAACTCAACAAGCTCAGGCGTCCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACAAGCTCAGGCATCCGCATCCATAAGTGAACTCGGACTCAACTCA
18068123 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* * *
18068151 CGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACAAGCTCAGG-CATCCGCATCCATAAGTGAACTCGGACTCAACTC
18068215 AACGAGTTCGGA
65 AACGAGTTCGGA
18068227 CATTCGCATC
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACAAGCTCAGGCATCCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:18084633 original size:40 final size:41
Alignment explanation
Indices: 18084439--18084619 Score: 214
Period size: 40 Copynumber: 4.5 Consensus size: 41
18084429 ATGATGTCCA
* * * *
18084439 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAT-AGCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAATCCG
* *
18084479 GACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
*
18084519 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
*
18084558 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
*
18084598 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
18084620 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
39 35 0.29
40 77 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
Found at i:18084639 original size:79 final size:79
Alignment explanation
Indices: 18084488--18084642 Score: 208
Period size: 79 Copynumber: 2.0 Consensus size: 79
18084478 GGACTAAGAT
* **
18084488 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
18084553 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
18084567 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
18084630 TATAT-CGGGTTAA
63 TAAATCCGGGTTAA
18084643 ATTCTGAAGG
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
78 2 0.03
79 43 0.64
80 22 0.33
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:18089250 original size:5 final size:5
Alignment explanation
Indices: 18089240--18089288 Score: 50
Period size: 5 Copynumber: 10.0 Consensus size: 5
18089230 TTAATTGTAG
*
18089240 TAATA TAATA T-A-A TAATA TAATA AAATA TAATA -ATATAA TAATA TAATA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA-AT-A TAATA TAATA
18089289 ATATTTACTT
Statistics
Matches: 37, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
3 2 0.05
4 3 0.08
5 28 0.76
6 3 0.08
7 1 0.03
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (5 bp):
TAATA
Found at i:18089257 original size:8 final size:8
Alignment explanation
Indices: 18089244--18089292 Score: 80
Period size: 8 Copynumber: 5.9 Consensus size: 8
18089234 TTGTAGTAAT
18089244 ATAATATA
1 ATAATATA
18089252 ATAATATA
1 ATAATATA
18089260 ATAAAATATA
1 AT--AATATA
18089270 ATAATATA
1 ATAATATA
18089278 ATAATATA
1 ATAATATA
18089286 ATAATAT
1 ATAATAT
18089293 TTACTTAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
8 31 0.79
10 8 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
ATAATATA
Found at i:18089258 original size:13 final size:13
Alignment explanation
Indices: 18089240--18089288 Score: 73
Period size: 13 Copynumber: 3.8 Consensus size: 13
18089230 TTAATTGTAG
18089240 TAATATAATATAA
1 TAATATAATATAA
*
18089253 TAATATAATAAAA
1 TAATATAATATAA
18089266 T-ATAATAATATAA
1 TAAT-ATAATATAA
18089279 TAATATAATA
1 TAATATAATA
18089289 ATATTTACTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
12 2 0.06
13 28 0.88
14 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
TAATATAATATAA
Found at i:18092662 original size:22 final size:21
Alignment explanation
Indices: 18092620--18092725 Score: 53
Period size: 22 Copynumber: 5.0 Consensus size: 21
18092610 ATGCGTATTG
* *
18092620 AGTTACAATATGTAATG-CATT
1 AGTTATAAAATGT-ATGCCATT
18092641 AGTTAGTAAAATGTATGCCA-T
1 AGTTA-TAAAATGTATGCCATT
* * *
18092662 --TTA-AATGATGGATGCGTATT
1 AGTTATAA-AATGTATGC-CATT
*
18092682 GAGTTATAATATGTAATG-CATT
1 -AGTTATAAAATGT-ATGCCATT
18092704 AGTTAGTAAAATGTATGCCATT
1 AGTTA-TAAAATGTATGCCATT
18092726 TGTGTGTGGT
Statistics
Matches: 64, Mismatches: 9, Indels: 23
0.67 0.09 0.24
Matches are distributed among these distances:
17 2 0.03
18 7 0.11
19 4 0.06
20 1 0.02
21 17 0.27
22 22 0.34
23 6 0.09
24 5 0.08
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.38
Consensus pattern (21 bp):
AGTTATAAAATGTATGCCATT
Found at i:18092699 original size:63 final size:63
Alignment explanation
Indices: 18092600--18092726 Score: 245
Period size: 63 Copynumber: 2.0 Consensus size: 63
18092590 GGTTATGGAG
18092600 TAAATGATGGATGCGTATTGAGTTACAATATGTAATGCATTAGTTAGTAAAATGTATGCCATT
1 TAAATGATGGATGCGTATTGAGTTACAATATGTAATGCATTAGTTAGTAAAATGTATGCCATT
*
18092663 TAAATGATGGATGCGTATTGAGTTATAATATGTAATGCATTAGTTAGTAAAATGTATGCCATT
1 TAAATGATGGATGCGTATTGAGTTACAATATGTAATGCATTAGTTAGTAAAATGTATGCCATT
18092726 T
1 T
18092727 GTGTGTGGTA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 63 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (63 bp):
TAAATGATGGATGCGTATTGAGTTACAATATGTAATGCATTAGTTAGTAAAATGTATGCCATT
Found at i:18093394 original size:40 final size:41
Alignment explanation
Indices: 18093298--18093402 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
18093288 CGAATGATGT
*
18093298 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * *
18093338 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
*
18093378 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
18093403 AACGAGTAGC
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.02
40 46 0.84
41 8 0.15
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:18094730 original size:61 final size:61
Alignment explanation
Indices: 18094655--18094777 Score: 237
Period size: 61 Copynumber: 2.0 Consensus size: 61
18094645 TAATAAACTG
*
18094655 TACTAATTGGCCCAACCAAAAATTCTAGAAAAAATATTTAGATGGGCATATGGGTCTAGTT
1 TACTAATTGGCCCAACCAAAAATTCTAGAAAAAATATGTAGATGGGCATATGGGTCTAGTT
18094716 TACTAATTGGCCCAACCAAAAATTCTAGAAAAAATATGTAGATGGGCATATGGGTCTAGTT
1 TACTAATTGGCCCAACCAAAAATTCTAGAAAAAATATGTAGATGGGCATATGGGTCTAGTT
18094777 T
1 T
18094778 CGGGGAAAAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (61 bp):
TACTAATTGGCCCAACCAAAAATTCTAGAAAAAATATGTAGATGGGCATATGGGTCTAGTT
Found at i:18095962 original size:39 final size:40
Alignment explanation
Indices: 18095904--18096027 Score: 99
Period size: 40 Copynumber: 3.1 Consensus size: 40
18095894 AATCAAGCAT
* * * *
18095904 CTTCGGGG-TTTAGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
* *** *
18095942 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
* ** * * *
18095982 CTTCGGGGCTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
18096022 CTTCGG
1 CTTCGG
18096028 ATCTTAGTCC
Statistics
Matches: 70, Mismatches: 14, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
38 7 0.10
39 18 0.26
40 45 0.64
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.24
Consensus pattern (40 bp):
CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:18095987 original size:40 final size:40
Alignment explanation
Indices: 18095940--18096084 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
18095930 CTCGCACAAG
* * * *
18095940 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
*
18095980 GCCTTCGGGGCTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
18096020 GCCTTCGGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGC-TAGCACAAAT
* *
18096061 GCCTTTGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
18096085 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 15, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
40 61 0.69
41 28 0.31
ACGTcount: A:0.23, C:0.26, G:0.26, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:18111109 original size:50 final size:49
Alignment explanation
Indices: 18110909--18111236 Score: 367
Period size: 50 Copynumber: 6.7 Consensus size: 49
18110899 ATAAGGTCCT
*
18110909 ATGTAAGACCATG-CTGGGACATGGCATTGGCATCG-ATATGAGACCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATATGAGATCCC
* * * * * * * *
18110956 GTATAAGACCATATCTGGGATATGGCATCGGCATCG-AGATGAGGTCTC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATATGAGATCCC
* * * * * * * *
18111004 GTATAATACCATGTTTGGGACATGACATCGGCA-CCAATACGAGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATATGAGATCCC
* **
18111052 ATGTAAGACCATGTTTGAAACATGGCATTGGCATCGATATATGAGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-ATATGAGATCCC
*
18111102 GTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATATGAGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-ATATGAGATCCC
* * *
18111152 ATGTAAGACCATGTCTGGGACATGACATTGGCATCGATATGTGTGATCCC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGA-ATATGAGATCCC
* *
18111202 ATGTAAGACCATATCTGGGATATGGCATTGGCATC
1 ATGTAAGACCATGTCTGGGACATGGCATTGGCATC
18111237 TTACTATGTG
Statistics
Matches: 238, Mismatches: 39, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
47 11 0.05
48 90 0.38
49 2 0.01
50 135 0.57
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (49 bp):
ATGTAAGACCATGTCTGGGACATGGCATTGGCATCGAATATGAGATCCC
Found at i:18117580 original size:30 final size:30
Alignment explanation
Indices: 18117544--18117604 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
18117534 TCCTTAACTC
18117544 AAACTTTGGAA-ATTTTACAATTTTGCCCCT
1 AAACTTTGGAATA-TTTACAATTTTGCCCCT
* * *
18117574 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAATATTTACAATTTTGCCCCT
18117604 A
1 A
18117605 GGCTCGAGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
30 26 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.41
Consensus pattern (30 bp):
AAACTTTGGAATATTTACAATTTTGCCCCT
Found at i:18121318 original size:25 final size:25
Alignment explanation
Indices: 18121269--18121319 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
18121259 CTTTCTATTC
* *
18121269 AAAAAATGGATAAATTAATTAATAT
1 AAAAAATAGATAAAATAATTAATAT
* *
18121294 AAAAAATAGATAAAATAGTTCATAT
1 AAAAAATAGATAAAATAATTAATAT
18121319 A
1 A
18121320 GGTTACATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.61, C:0.02, G:0.08, T:0.29
Consensus pattern (25 bp):
AAAAAATAGATAAAATAATTAATAT
Found at i:18121380 original size:23 final size:23
Alignment explanation
Indices: 18121351--18121396 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
18121341 TTTTTTTTGC
*
18121351 TAAAAATTTCATTTATTTATGTTG
1 TAAAATTTTCATTT-TTTATGTTG
*
18121375 TAAAATTTTCATTTTTTTTGTT
1 TAAAATTTTCATTTTTTATGTT
18121397 AAAAAAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.28, C:0.04, G:0.07, T:0.61
Consensus pattern (23 bp):
TAAAATTTTCATTTTTTATGTTG
Found at i:18122624 original size:16 final size:17
Alignment explanation
Indices: 18122603--18122642 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
18122593 TTTAAAAAAC
* *
18122603 ATTTTTAATATTTTAT-
1 ATTTTTAATAATTCATA
18122619 ATTTTTAATAATTCATA
1 ATTTTTAATAATTCATA
18122636 ATTTTTA
1 ATTTTTA
18122643 TAAATACAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 14 0.67
17 7 0.33
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (17 bp):
ATTTTTAATAATTCATA
Found at i:18125746 original size:18 final size:18
Alignment explanation
Indices: 18125723--18125769 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
18125713 CACTTTTCAA
18125723 TGTGAACACTCCTCTAAG
1 TGTGAACACTCCTCTAAG
18125741 TGTGAACACTCCTCTAAG
1 TGTGAACACTCCTCTAAG
18125759 TGTGAACACTC
1 TGTGAACACTC
18125770 TCTTTTGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.28
Consensus pattern (18 bp):
TGTGAACACTCCTCTAAG
Found at i:18130364 original size:32 final size:32
Alignment explanation
Indices: 18130274--18130357 Score: 150
Period size: 32 Copynumber: 2.6 Consensus size: 32
18130264 AAACCTATTA
* *
18130274 AACTTACTCCAAAAATCATACCACAAACACTT
1 AACTTACTCCTAAAATCATGCCACAAACACTT
18130306 AACTTACTCCTAAAATCATGCCACAAACACTT
1 AACTTACTCCTAAAATCATGCCACAAACACTT
18130338 AACTTACTCCTAAAATCATG
1 AACTTACTCCTAAAATCATG
18130358 TAACAAAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.43, C:0.30, G:0.02, T:0.25
Consensus pattern (32 bp):
AACTTACTCCTAAAATCATGCCACAAACACTT
Found at i:18136922 original size:62 final size:62
Alignment explanation
Indices: 18136846--18136969 Score: 239
Period size: 62 Copynumber: 2.0 Consensus size: 62
18136836 ATTCCGAATT
18136846 GGATATCTCCCTGCACAGAGCTTCAATACTGATGCCGTTTCTTTCTATAGAAACTAGACTCA
1 GGATATCTCCCTGCACAGAGCTTCAATACTGATGCCGTTTCTTTCTATAGAAACTAGACTCA
*
18136908 GGATATCTCCCTGCACAGAGCTTCAATACTGATGCCGTTTGTTTCTATAGAAACTAGACTCA
1 GGATATCTCCCTGCACAGAGCTTCAATACTGATGCCGTTTCTTTCTATAGAAACTAGACTCA
18136970 AAAACAAATC
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (62 bp):
GGATATCTCCCTGCACAGAGCTTCAATACTGATGCCGTTTCTTTCTATAGAAACTAGACTCA
Found at i:18142121 original size:177 final size:177
Alignment explanation
Indices: 18141824--18142176 Score: 688
Period size: 177 Copynumber: 2.0 Consensus size: 177
18141814 ATCTATCTTT
18141824 GAAAACACTGAGGCTCCCTTTAGTTGATCAAACAAATCATCAATACGCGGTAACGGATATTTATT
1 GAAAACACTGAGGCTCCCTTTAGTTGATCAAACAAATCATCAATACGCGGTAACGGATATTTATT
18141889 CTTTATCGTCACTTTATTCAGTTGACGATAGTCAATGCACAACCTCATGGTTCCGTCCTTCTTTT
66 CTTTATCGTCACTTTATTCAGTTGACGATAGTCAATGCACAACCTCATGGTTCCGTCCTTCTTTT
18141954 TCACAAACAATACTGGTGCACCCCAAGGTGAGAAACTTGGTCGAGCG
131 TCACAAACAATACTGGTGCACCCCAAGGTGAGAAACTTGGTCGAGCG
18142001 GAAAACACTGAGGCTCCCTTTAGTTGATCAAACAAATCATCAATACGCGGTAACGGATATTTATT
1 GAAAACACTGAGGCTCCCTTTAGTTGATCAAACAAATCATCAATACGCGGTAACGGATATTTATT
*
18142066 CTTTATCGTCACTTTATTCAGTTGACGATAGTCAATGCACAACCTCATTGTTCCGTCCTTCTTTT
66 CTTTATCGTCACTTTATTCAGTTGACGATAGTCAATGCACAACCTCATGGTTCCGTCCTTCTTTT
*
18142131 TCACGAACAATACTGGTGCACCCCAAGGTGAGAAACTTGGTCGAGC
131 TCACAAACAATACTGGTGCACCCCAAGGTGAGAAACTTGGTCGAGC
18142177 AAAACCTCTA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
177 174 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (177 bp):
GAAAACACTGAGGCTCCCTTTAGTTGATCAAACAAATCATCAATACGCGGTAACGGATATTTATT
CTTTATCGTCACTTTATTCAGTTGACGATAGTCAATGCACAACCTCATGGTTCCGTCCTTCTTTT
TCACAAACAATACTGGTGCACCCCAAGGTGAGAAACTTGGTCGAGCG
Found at i:18145808 original size:40 final size:40
Alignment explanation
Indices: 18145670--18145854 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
18145660 GCTACTCGTT
* * * *
18145670 CAAATGCCTTCGGGACATATCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACA
* *
18145710 CAAATGCCTTCGGGACTTAACCC-GAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAA-TTAGTAACTCACA
*
18145750 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACA
* * * *
18145789 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAACTCA-CA
18145830 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18145855 CATCATTCGA
Statistics
Matches: 124, Mismatches: 12, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 80 0.65
41 10 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACA
Found at i:18145838 original size:79 final size:80
Alignment explanation
Indices: 18145670--18145854 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 80
18145660 GCTACTCGTT
* * * *
18145670 CAAATGCCTTCGGGACATATCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCACACAAATGCCTTCGGGACTTAACCCG
* *
18145734 AATTTAGTAACTCGCAC
64 AATATAGTAACTAGCAC
* ** *
18145751 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCACACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGA-CTTAACCCGA
* *
18145814 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
18145830 CAAAGCCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
18145855 CATCATTCGA
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 25 0.29
81 3 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCACACAAATGCCTTCGGGACTTAACCCGAA
TATAGTAACTAGCAC
Found at i:18151049 original size:28 final size:28
Alignment explanation
Indices: 18150949--18151050 Score: 82
Period size: 28 Copynumber: 3.5 Consensus size: 28
18150939 TCAGAGTTAA
* * *
18150949 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCATAGCCCATATCAGTATCAAT
*
18150977 CTGGGCCATAGCCCCTTAT-AGTATCATAGTAT
1 CTGGGCCATAG-CCCATATCAGTATC--A--AT
* *
18151009 ACTGGGTC-TAGCCCATATCAGTGTCAAT
1 -CTGGGCCATAGCCCATATCAGTATCAAT
18151037 CTGGGCCATAGCCC
1 CTGGGCCATAGCCC
18151051 TATTACAAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 16
0.71 0.10 0.20
Matches are distributed among these distances:
27 6 0.10
28 22 0.38
29 6 0.10
30 2 0.03
31 6 0.10
32 10 0.17
33 6 0.10
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (28 bp):
CTGGGCCATAGCCCATATCAGTATCAAT
Found at i:18151104 original size:20 final size:20
Alignment explanation
Indices: 18151079--18151124 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
18151069 GTTGGGTCTT
18151079 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
18151099 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
18151118 GCCCATA
1 GCCCATA
18151125 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:18151133 original size:19 final size:20
Alignment explanation
Indices: 18151091--18151134 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
18151081 CCATATTAAC
** *
18151091 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
18151111 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
18151130 ACAGT
1 ACAGT
18151135 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:18158101 original size:50 final size:48
Alignment explanation
Indices: 18157853--18158168 Score: 275
Period size: 46 Copynumber: 6.7 Consensus size: 48
18157843 GCTATTGTGG
* * * *
18157853 GCTAGTGTAA-AACATGTCTGGGACAT-GCATTGGC-CACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTC-GATGATGAGA
* * * * *
18157899 GCCAGTGTAAGACCATATCTGGGACATGGCATCGGCATTGA-GACGAGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC-TCGATGATGAGA
*
18157947 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGA-GACGTA-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGATGATG-AGA
* * * *
18157993 GCCAGTGTAAGA-CATGTCTGGGACAT-ACATCAGCTACGA-GATGTG-
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-CGATGATGAGA
* *
18158038 TC-AGTGTAAGACCATGTCTAGGACATGGCATCGG-TACGGAT-ATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCT-C-GATGA--TGAGA
*
18158087 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATGATGATA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGG-CTCGATGATGAGA
*
18158136 GCTAGCGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
18158169 AGCACCTTAC
Statistics
Matches: 224, Mismatches: 27, Indels: 35
0.78 0.09 0.12
Matches are distributed among these distances:
44 9 0.04
45 19 0.08
46 67 0.30
47 29 0.13
48 25 0.11
49 38 0.17
50 34 0.15
51 2 0.01
52 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGATGATGAGA
Found at i:18171288 original size:47 final size:47
Alignment explanation
Indices: 18171219--18171667 Score: 781
Period size: 47 Copynumber: 9.5 Consensus size: 47
18171209 TTGATTCGTA
*
18171219 GTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
18171266 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
18171313 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
18171360 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
18171407 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* *
18171454 GTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
18171501 GTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATGAAT
1 GTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
** *
18171550 GTGAAAGTGTATATATGTGATAAGGCCTAAAAGCCGATATGATGAAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
* * *
18171597 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAACGTGATGGAT
1 GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
*
18171644 GTGAAAGTGTATAAATGTGATAAG
1 GTGAAAGTGTATATATGTGATAAG
18171668 TCCCGAAGGG
Statistics
Matches: 385, Mismatches: 15, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
47 339 0.88
49 46 0.12
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
GTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAAT
Found at i:18171776 original size:137 final size:137
Alignment explanation
Indices: 18171606--18171880 Score: 514
Period size: 137 Copynumber: 2.0 Consensus size: 137
18171596 TGTGAAAGTG
*
18171606 TATATATGTGATAAGGCCTAATGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCC
1 TATATATGTGATAAGGCCGAATGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCC
*
18171671 CGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGAGAATATTA
66 CGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGACAATATTA
18171736 TCACTGA
131 TCACTGA
* *
18171743 TATATATGTGATAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCC
1 TATATATGTGATAAGGCCGAATGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCC
18171808 CGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGACAATATTA
66 CGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGACAATATTA
18171873 TCACTGA
131 TCACTGA
18171880 T
1 T
18171881 TAATGTCCGT
Statistics
Matches: 134, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 134 1.00
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.28
Consensus pattern (137 bp):
TATATATGTGATAAGGCCGAATGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAGTCC
CGAAGGGCATTTGTGTCAGTACTATATCCGGGTTAAAACCCCGCAGGCTTTATGCGACAATATTA
TCACTGA
Found at i:18175118 original size:149 final size:149
Alignment explanation
Indices: 18174848--18175742 Score: 1790
Period size: 149 Copynumber: 6.0 Consensus size: 149
18174838 TAACAAAGCA
18174848 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
1 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
18174913 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
66 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
18174978 TCAAATACTTTGTTTTTAT
131 TCAAATACTTTGTTTTTAT
18174997 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
1 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
18175062 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
66 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
18175127 TCAAATACTTTGTTTTTAT
131 TCAAATACTTTGTTTTTAT
18175146 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
1 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
18175211 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
66 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
18175276 TCAAATACTTTGTTTTTAT
131 TCAAATACTTTGTTTTTAT
18175295 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
1 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
18175360 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
66 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
18175425 TCAAATACTTTGTTTTTAT
131 TCAAATACTTTGTTTTTAT
18175444 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
1 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
18175509 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
66 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
18175574 TCAAATACTTTGTTTTTAT
131 TCAAATACTTTGTTTTTAT
18175593 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
1 AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
18175658 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
66 CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
18175723 TCAAATACTTTGTTTTTAT
131 TCAAATACTTTGTTTTTAT
18175742 A
1 A
18175743 TTTAAAGATA
Statistics
Matches: 746, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
149 746 1.00
ACGTcount: A:0.40, C:0.19, G:0.11, T:0.31
Consensus pattern (149 bp):
AAATCACAAAGCATTCAAAAGTTATAATAACGGAAAACAAAATTCCATAGCTCGAATCCCTTGAA
CAATAATATAGAATCACAATCTCCCAGATTGAAAGTTTGATTTTGCATTTGCAACTCATCACAGT
TCAAATACTTTGTTTTTAT
Found at i:18176070 original size:33 final size:34
Alignment explanation
Indices: 18176014--18176080 Score: 118
Period size: 33 Copynumber: 2.0 Consensus size: 34
18176004 GATTTCGTAC
18176014 AAAGATTTAAAAGAATTCACATAACCATCACAAT
1 AAAGATTTAAAAGAATTCACATAACCATCACAAT
*
18176048 AAAGATTT-AAAGAATTCGCATAACCATCACAAT
1 AAAGATTTAAAAGAATTCACATAACCATCACAAT
18176081 CAAACAAACT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
33 24 0.75
34 8 0.25
ACGTcount: A:0.51, C:0.18, G:0.07, T:0.24
Consensus pattern (34 bp):
AAAGATTTAAAAGAATTCACATAACCATCACAAT
Found at i:18177055 original size:42 final size:42
Alignment explanation
Indices: 18176996--18177090 Score: 136
Period size: 42 Copynumber: 2.3 Consensus size: 42
18176986 TGCAGATACT
* * *
18176996 CATCAACTTGTGTGAGCAGCATTGTATAACTTACATTTCGAC
1 CATCAACTTGTGTGAGCAGAATCGTATAACTTACATTTCAAC
* *
18177038 CATCATCTTGTGTGAGCAGAATCGTATAGCTTACATTTCAAC
1 CATCAACTTGTGTGAGCAGAATCGTATAACTTACATTTCAAC
*
18177080 CATTAACTTGT
1 CATCAACTTGT
18177091 ATGGGCAGGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (42 bp):
CATCAACTTGTGTGAGCAGAATCGTATAACTTACATTTCAAC
Found at i:18177260 original size:49 final size:49
Alignment explanation
Indices: 18177200--18177304 Score: 133
Period size: 49 Copynumber: 2.1 Consensus size: 49
18177190 AATAGGTATG
* * *
18177200 AAAAAGGAAAGGAAAGGTATGTGT-TCA-AATGAACTATGTCATGAAATTAT
1 AAAAA-GAAAGGAAAGATATGT-TAT-AGAATGAACTACGCCATGAAATTAT
18177250 AAAAAGAAAGGAAAGATATGTTATAGAATGAACTACGCCATGAAATTAT
1 AAAAAGAAAGGAAAGATATGTTATAGAATGAACTACGCCATGAAATTAT
*
18177299 GAAAAG
1 AAAAAG
18177305 GATTGAAATT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
48 2 0.04
49 42 0.86
50 5 0.10
ACGTcount: A:0.50, C:0.07, G:0.21, T:0.23
Consensus pattern (49 bp):
AAAAAGAAAGGAAAGATATGTTATAGAATGAACTACGCCATGAAATTAT
Found at i:18180367 original size:133 final size:135
Alignment explanation
Indices: 18179989--18180400 Score: 573
Period size: 137 Copynumber: 3.0 Consensus size: 135
18179979 ATATAGATAA
*
18179989 AATTAATATATGAATTTGATTTATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
* *
18180054 TAAACAATTATATTAATTAATTTCGATCAAAATATAAACA-A-TTGGAAATTAATATCCTTTAGG
66 TAAACAATTATATTAATTAATTTCGATCAAAATATAAA-AGACATGGAAATTAATAT--TCT-GG
18180117 AAAGAATAT
127 AAAGAATAT
* *
18180126 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTACTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
* * * * * *
18180191 AAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAGGACATAGAAATTAATATTCTGGAAAG
66 TAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTGGAAAG
18180256 AATAT
131 AATAT
*
18180261 AATTAATATATGAATTTAATTCATACAAAATATTAA-T-TATATATTTTAGC-GAATTTATTAAT
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-CTGAATTTATTAAT
* * *
18180323 ATAAACAATTATAATAATTAATTTCAATCAAAATATAAAAGACATGGAAATTACTATTCTTTTGG
65 ATAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTC---TGG
*
18180388 AAAGAAAAT
127 AAAGAATAT
18180397 AATT
1 AATT
18180401 CGTTTTTTTC
Statistics
Matches: 245, Mismatches: 24, Indels: 13
0.87 0.09 0.05
Matches are distributed among these distances:
133 71 0.29
134 2 0.01
135 46 0.19
136 17 0.07
137 97 0.40
138 12 0.05
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (135 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTGAATTTATTAATA
TAAACAATTATATTAATTAATTTCGATCAAAATATAAAAGACATGGAAATTAATATTCTGGAAAG
AATAT
Found at i:18183227 original size:28 final size:28
Alignment explanation
Indices: 18183195--18183262 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
18183185 TAGATGTACT
* * *
18183195 ATTATATCCTTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATGACC
18183223 ATTATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCTATGTATGCAAAATGACC
*
18183251 TTTATACCCCTA
1 ATTATACCCCTA
18183263 GGGTTAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.34, C:0.24, G:0.07, T:0.35
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:18183456 original size:34 final size:29
Alignment explanation
Indices: 18183368--18183459 Score: 136
Period size: 29 Copynumber: 3.2 Consensus size: 29
18183358 AGGAAGCGTC
18183368 CTGGTGGCTA-TGCCACAAAT-TATCTGTT
1 CTGGTGGC-ACTGCCACAAATATATCTGTT
*
18183396 CTGGTGGCCCTGCCACAAATATATCTGTT
1 CTGGTGGCACTGCCACAAATATATCTGTT
18183425 CTGGTGGCACTGCCACAAA-ATATCTGTAT
1 CTGGTGGCACTGCCACAAATATATCTGT-T
18183454 CTGGTG
1 CTGGTG
18183460 ACTCTGTCAC
Statistics
Matches: 59, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
28 26 0.44
29 33 0.56
ACGTcount: A:0.22, C:0.24, G:0.23, T:0.32
Consensus pattern (29 bp):
CTGGTGGCACTGCCACAAATATATCTGTT
Found at i:18184569 original size:11 final size:10
Alignment explanation
Indices: 18184541--18184574 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
18184531 AGCCTGTAAG
18184541 TATTCTGAAT
1 TATTCTGAAT
*
18184551 TTTTCTGAAT
1 TATTCTGAAT
18184561 ATATTCTGAAT
1 -TATTCTGAAT
18184572 TAT
1 TAT
18184575 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:18188195 original size:32 final size:32
Alignment explanation
Indices: 18188154--18188218 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
18188144 GGTGGCCTGG
18188154 ACTTAAGCGAGAGGTAACGGAATTTGTAGGGA
1 ACTTAAGCGAGAGGTAACGGAATTTGTAGGGA
18188186 ACTTAAGCGAGAGGTAACGGAATTTGTAGGGA
1 ACTTAAGCGAGAGGTAACGGAATTTGTAGGGA
18188218 A
1 A
18188219 ATGTCTGACA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.35, C:0.09, G:0.34, T:0.22
Consensus pattern (32 bp):
ACTTAAGCGAGAGGTAACGGAATTTGTAGGGA
Found at i:18191148 original size:28 final size:28
Alignment explanation
Indices: 18191108--18191175 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
18191098 TAGATGTACT
*
18191108 ATTATACCCCTATGTATGCAAAATTACC
1 ATTATACCCCTATGTATGCAAAATGACC
18191136 ATTATACCCCTATGTATGCAAAATGACC
1 ATTATACCCCTATGTATGCAAAATGACC
*
18191164 TTTATACCCCTA
1 ATTATACCCCTA
18191176 GGGATAATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.34, C:0.26, G:0.07, T:0.32
Consensus pattern (28 bp):
ATTATACCCCTATGTATGCAAAATGACC
Found at i:18191322 original size:28 final size:29
Alignment explanation
Indices: 18191281--18191343 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
18191271 AGGAAGCGTC
*
18191281 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
18191309 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
18191338 CTGGTG
1 CTGGTG
18191344 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:18191354 original size:29 final size:28
Alignment explanation
Indices: 18191291--18191354 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
18191281 CTGGTGGCTA
* *
18191291 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
18191319 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
18191348 TGTCACA
1 TGCCACA
18191355 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:18202623 original size:66 final size:68
Alignment explanation
Indices: 18202494--18202623 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 68
18202484 GGGATGTATC
* * *
18202494 CCATGTAGACAAGAGAGCTACGTGAGAGATAAATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGA
1 CCATGTAGACAAGAGAGCTAC--G-GAGACAAATGTAGCTAGGTCGCATGAGTGGTGCCAAGTGA
18202559 AGGACA
63 AGGACA
* *
18202565 CCATGTAGACAAGAGAGCTAC-GAGACAAAT-TGGCTAGGTCGCATGAGTGGTGCTAAGTG
1 CCATGTAGACAAGAGAGCTACGGAGACAAATGTAGCTAGGTCGCATGAGTGGTGCCAAGTG
18202624 TTCACCATGT
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
66 25 0.46
67 8 0.15
71 21 0.39
ACGTcount: A:0.32, C:0.17, G:0.32, T:0.20
Consensus pattern (68 bp):
CCATGTAGACAAGAGAGCTACGGAGACAAATGTAGCTAGGTCGCATGAGTGGTGCCAAGTGAAGG
ACA
Found at i:18208009 original size:17 final size:17
Alignment explanation
Indices: 18207987--18208020 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
18207977 CATCGAATTC
18207987 ATTACTCATGAATTTTG
1 ATTACTCATGAATTTTG
18208004 ATTACTCATGAATTTTG
1 ATTACTCATGAATTTTG
18208021 CGTACATACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.47
Consensus pattern (17 bp):
ATTACTCATGAATTTTG
Found at i:18208302 original size:48 final size:48
Alignment explanation
Indices: 18208231--18208503 Score: 384
Period size: 48 Copynumber: 5.6 Consensus size: 48
18208221 ACAATGCCTC
* * *
18208231 ATGCCGATGTCATGTCCAAGACATGGTCTTACACTGGCTCACATAATG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
* * *
18208279 ATGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCTTACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
18208327 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCTG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACAT-A--A--C-G
* *
18208381 ATGCCGATGCCATGTCCTAGACATGGCCTTACACTGGCTCACATAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
* * *
18208429 ATGCCGATGTCATGTCTCAGACATGGTCTTACACTGGCTAACATAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
*
18208477 ATGCCGATGCCATGTCTCAGACATGGT
1 ATGCCGATGCCATGTCCCAGACATGGT
18208504 TTTATACATG
Statistics
Matches: 202, Mismatches: 17, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
48 154 0.76
49 2 0.01
51 2 0.01
53 2 0.01
54 42 0.21
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
Found at i:18208425 original size:102 final size:102
Alignment explanation
Indices: 18208231--18208487 Score: 382
Period size: 102 Copynumber: 2.6 Consensus size: 102
18208221 ACAATGCCTC
*
18208231 ATGCCGATGTCATGTCCAAGACATGGTCTTACACTGGCTCACAT-A--A---TGATGCCGATGCC
1 ATGCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCTGATGCCGATGCC
* * *
18208290 ATGTCCCAGACATGGTCTTATACTGGCTTACATAACA
66 ATGTCCCAGACATGGCCTTACACTGGCTCACATAACA
*
18208327 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCTGATGCCGATGCC
1 ATGCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCTGATGCCGATGCC
* *
18208392 ATGTCCTAGACATGGCCTTACACTGGCTCACATAACG
66 ATGTCCCAGACATGGCCTTACACTGGCTCACATAACA
* * *
18208429 ATGCCGATGTCATGTCTCAGACATGGTCTTACACTGGCTAACATAACGATGCCGATGCC
1 ATGCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCTGATGCC
18208488 ATGTCTCAGA
Statistics
Matches: 144, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
96 42 0.29
97 1 0.01
99 1 0.01
102 100 0.69
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (102 bp):
ATGCCGATGTCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGCTGATGCCGATGCC
ATGTCCCAGACATGGCCTTACACTGGCTCACATAACA
Found at i:18208502 original size:150 final size:150
Alignment explanation
Indices: 18208231--18208503 Score: 456
Period size: 150 Copynumber: 1.8 Consensus size: 150
18208221 ACAATGCCTC
* * *
18208231 ATGCCGATGTCATGTCCAAGACATGGTCTTACACTGGCTCACATAATGATGCCGATGCCATGTCC
1 ATGCCGATGCCATGTCCAAGACATGGCCTTACACTGGCTCACATAACGATGCCGATGCCATGTCC
* *
18208296 CAGACATGGTCTTATACTGGCTTACATAACAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
66 CAGACATGGTCTTACACTGGCTAACATAACAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
18208361 TGGCTCACATAACGATGCTG
131 TGGCTCACATAACGATGCTG
* * *
18208381 ATGCCGATGCCATGTCCTAGACATGGCCTTACACTGGCTCACATAACGATGCCGATGTCATGTCT
1 ATGCCGATGCCATGTCCAAGACATGGCCTTACACTGGCTCACATAACGATGCCGATGCCATGTCC
* *
18208446 CAGACATGGTCTTACACTGGCTAACATAACGATGCCGATGCCATGTCTCAGACATGGT
66 CAGACATGGTCTTACACTGGCTAACATAACAATGCCGATGCCATGTCCCAGACATGGT
18208504 TTTATACATG
Statistics
Matches: 113, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
150 113 1.00
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (150 bp):
ATGCCGATGCCATGTCCAAGACATGGCCTTACACTGGCTCACATAACGATGCCGATGCCATGTCC
CAGACATGGTCTTACACTGGCTAACATAACAATGCCGATGCCATGTCCCAGACATGGTCTTACAC
TGGCTCACATAACGATGCTG
Found at i:18220299 original size:37 final size:37
Alignment explanation
Indices: 18220239--18220316 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
18220229 TATTACGAAG
* * * *
18220239 TCTTACCCGGACATAATCTCCACACGAAGTTATCGGA
1 TCTTACCCGGAAAAAATCCCCACACGAAGTCATCGGA
* *
18220276 TCTTACCCGGAAAAAATCCCCACACGTAGTCATCGGG
1 TCTTACCCGGAAAAAATCCCCACACGAAGTCATCGGA
18220313 TCTT
1 TCTT
18220317 TAGAGCTCGG
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.24
Consensus pattern (37 bp):
TCTTACCCGGAAAAAATCCCCACACGAAGTCATCGGA
Found at i:18220504 original size:47 final size:47
Alignment explanation
Indices: 18220435--18221080 Score: 1213
Period size: 47 Copynumber: 13.7 Consensus size: 47
18220425 CCCTTCGGGA
* * * *
18220435 CTTATCACATTTATACACTTTCACATCCATCACGTCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220482 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220529 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220576 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220623 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220670 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220717 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220764 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220811 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220858 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220905 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220952 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
18220999 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
18221046 CTTATCTCATATATGCA-TGTTCACATCCATCACAT
1 CTTATCACATATATACACT-TTCACATTCATCACAT
18221081 AGAATCCTAA
Statistics
Matches: 591, Mismatches: 7, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
46 1 0.00
47 590 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:18226253 original size:40 final size:40
Alignment explanation
Indices: 18226014--18226239 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
18226004 TTGAATGATG
* * * *
18226014 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
18226054 TTCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
18226094 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
18226134 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
18226174 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
18226215 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
18226240 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 157 0.94
41 9 0.05
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:18230261 original size:84 final size:84
Alignment explanation
Indices: 18230120--18230286 Score: 307
Period size: 84 Copynumber: 2.0 Consensus size: 84
18230110 TTAAATATCC
* *
18230120 TAATCTATTCCCAAGGTTCAAACGGGATTTTCCTCAATCACACATCTTTTCCGTCTTCTACGGAA
1 TAATCTATTCCCAAGGTTCAAACGGGATTTTCCTCAATCACACATCTTTTCCGTCTTCCACGAAA
*
18230185 TGTCGGAACTGATACTTGT
66 TGTCGGAACCGATACTTGT
18230204 TAATCTATTCCCAAGGTTCAAACGGGATTTTCCTCAATCACACATCTTTTCCGTCTTCCACGAAA
1 TAATCTATTCCCAAGGTTCAAACGGGATTTTCCTCAATCACACATCTTTTCCGTCTTCCACGAAA
18230269 TGTCGGAACCGATACTTG
66 TGTCGGAACCGATACTTG
18230287 GTAGCATTTC
Statistics
Matches: 80, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (84 bp):
TAATCTATTCCCAAGGTTCAAACGGGATTTTCCTCAATCACACATCTTTTCCGTCTTCCACGAAA
TGTCGGAACCGATACTTGT
Found at i:18233513 original size:3 final size:3
Alignment explanation
Indices: 18233505--18233545 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
18233495 AAAAGAAACA
18233505 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
18233546 ATGAATAGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:18235869 original size:3 final size:3
Alignment explanation
Indices: 18235855--18235922 Score: 100
Period size: 3 Copynumber: 22.7 Consensus size: 3
18235845 AGGTCAAACC
*
18235855 TCA TCA TAA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA
* * *
18235903 TCC TCA TCC TCA TCT TCA TC
1 TCA TCA TCA TCA TCA TCA TC
18235923 TTCAATATCA
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 57 1.00
ACGTcount: A:0.29, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:18238785 original size:14 final size:14
Alignment explanation
Indices: 18238758--18238798 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
18238748 TATATTTTTT
18238758 AAAAAATT-ATATA
1 AAAAAATTAATATA
18238771 AAAATAA-TAATATA
1 AAAA-AATTAATATA
18238785 AAAAAATTAATATA
1 AAAAAATTAATATA
18238799 GCAAGTCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 7 0.28
14 18 0.72
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAAAAATTAATATA
Found at i:18239271 original size:18 final size:18
Alignment explanation
Indices: 18239235--18239268 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18239225 TGAGTTTTCA
*
18239235 AATTCGAATAACTCGAAT
1 AATTCGAATAACACGAAT
18239253 AATTCGAATAA-ACGAA
1 AATTCGAATAACACGAA
18239269 ATATGAAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.50, C:0.15, G:0.12, T:0.24
Consensus pattern (18 bp):
AATTCGAATAACACGAAT
Found at i:18239625 original size:18 final size:17
Alignment explanation
Indices: 18239602--18239662 Score: 61
Period size: 17 Copynumber: 3.4 Consensus size: 17
18239592 TACTACCCTA
18239602 TTTACTTTCCCTCAAACT
1 TTTACTTTCCC-CAAACT
*
18239620 TTTAC-TTCCCAAAACTT
1 TTTACTTTCCCCAAAC-T
*
18239637 TTTATTTTCCCCCTAAACT
1 TTTACTTT-CCCC-AAACT
18239656 TTTACTT
1 TTTACTT
18239663 CTCACCCTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
16 4 0.11
17 10 0.29
18 7 0.20
19 10 0.29
20 4 0.11
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.48
Consensus pattern (17 bp):
TTTACTTTCCCCAAACT
Found at i:18239889 original size:18 final size:19
Alignment explanation
Indices: 18239844--18239890 Score: 51
Period size: 18 Copynumber: 2.5 Consensus size: 19
18239834 GGTATCAATT
**
18239844 TCACATTTTATCTTTAAAA
1 TCACATTTTATCTAAAAAA
* *
18239863 TAACTTTTTAT-TAAAAAA
1 TCACATTTTATCTAAAAAA
18239881 TCACATTTTA
1 TCACATTTTA
18239891 CATTTAATAT
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
18 13 0.59
19 9 0.41
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (19 bp):
TCACATTTTATCTAAAAAA
Found at i:18250870 original size:27 final size:27
Alignment explanation
Indices: 18250813--18250872 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 27
18250803 ATACATCTCA
*
18250813 TAGGGGCATATCAGTCATTTTACCATG
1 TAGGGGCATATCAGTCATTTTACAATG
*
18250840 TAGGGGCATTTCAGTCATTTTATCAAT-
1 TAGGGGCATATCAGTCATTTTA-CAATG
18250867 TAGGGG
1 TAGGGG
18250873 GTCTAGGAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.90
28 3 0.10
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (27 bp):
TAGGGGCATATCAGTCATTTTACAATG
Found at i:18252808 original size:40 final size:40
Alignment explanation
Indices: 18252763--18252914 Score: 198
Period size: 40 Copynumber: 3.8 Consensus size: 40
18252753 ATAACCACAA
* * *
18252763 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
18252803 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
18252843 GCACAAATGCCTTCGGATCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
18252883 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
18252915 CATTCAAATG
Statistics
Matches: 100, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 1 0.01
40 95 0.95
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:18252833 original size:80 final size:80
Alignment explanation
Indices: 18252734--18252914 Score: 204
Period size: 80 Copynumber: 2.3 Consensus size: 80
18252724 ACCCAAGTTT
* * * * * * *
18252734 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGATCTTAACCCGGATAAAAG
*
18252797 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * ** * *
18252813 CTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGATCTTAGCCCGGATAAAAT
1 CTTCGGGACTTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGATCTTAACCCGGATAAAAG
*
18252878 CACTAGCATAAATGC
66 CACTAGCACAAATGC
18252893 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
18252915 CATTCAAATG
Statistics
Matches: 84, Mismatches: 16, Indels: 3
0.82 0.16 0.03
Matches are distributed among these distances:
79 10 0.12
80 71 0.85
81 3 0.04
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGATCTTAACCCGGATAAAAG
CACTAGCACAAATGC
Found at i:18259352 original size:29 final size:29
Alignment explanation
Indices: 18259319--18259378 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
18259309 ATAACCAAAC
*
18259319 CTACAAAAACTTTATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
*
18259348 CTACATAAACTTCATATCCATAAACCCAT
1 CTACAAAAACTTCATATCCATAAACCCAT
18259377 CT
1 CT
18259379 TTGAATCCTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.30, G:0.00, T:0.28
Consensus pattern (29 bp):
CTACAAAAACTTCATATCCATAAACCCAT
Found at i:18259371 original size:15 final size:15
Alignment explanation
Indices: 18259325--18259372 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
18259315 AAACCTACAA
*
18259325 AAACTTTATATCCAT
1 AAACTTCATATCCAT
* * *
18259340 AAAC-CCATCTACAT
1 AAACTTCATATCCAT
18259354 AAACTTCATATCCAT
1 AAACTTCATATCCAT
18259369 AAAC
1 AAAC
18259373 CCATCTTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.44, C:0.27, G:0.00, T:0.29
Consensus pattern (15 bp):
AAACTTCATATCCAT
Found at i:18259674 original size:7 final size:7
Alignment explanation
Indices: 18259662--18259688 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
18259652 GAAACCGATT
18259662 GGAAGAG
1 GGAAGAG
18259669 GGAAGAG
1 GGAAGAG
18259676 GGAAGAG
1 GGAAGAG
18259683 GGAAGA
1 GGAAGA
18259689 AGAAGAAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.56, T:0.00
Consensus pattern (7 bp):
GGAAGAG
Found at i:18263549 original size:40 final size:40
Alignment explanation
Indices: 18263464--18263651 Score: 315
Period size: 40 Copynumber: 4.7 Consensus size: 40
18263454 GCTACTAGCT
*
18263464 CAAATGCCTTCGGGACTTAGCCCGGTT-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
18263503 CAAATGCCTTCGGGACCTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
18263543 CGAATGCCTTCAGGACTTAGCCCGGATATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
18263583 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
18263623 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
18263652 CAATCCGAAT
Statistics
Matches: 137, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 26 0.19
40 111 0.81
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:18265437 original size:28 final size:29
Alignment explanation
Indices: 18265359--18265444 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
18265349 ACATGGTTTG
* **
18265359 GAAT-TGATTCGGGCCGGATGGGCCATAT
1 GAATATGATTTGGGCCTAATGGGCCATAT
18265387 GAATATGATTTGGGCCTAATGGGCCATAT
1 GAATATGATTTGGGCCTAATGGGCCATAT
*
18265416 GAATGA-GA-TTGGGCCTAGTGGGCCATAT
1 GAAT-ATGATTTGGGCCTAATGGGCCATAT
18265444 G
1 G
18265445 CATGTATATA
Statistics
Matches: 52, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
28 24 0.46
29 27 0.52
30 1 0.02
ACGTcount: A:0.24, C:0.15, G:0.34, T:0.27
Consensus pattern (29 bp):
GAATATGATTTGGGCCTAATGGGCCATAT
Found at i:18269272 original size:43 final size:43
Alignment explanation
Indices: 18269207--18269292 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
18269197 GACAGTGAAC
*
18269207 TCTTTCCAAGACTCTGGCTGTATCAAGACAGGGGCCTCAGTCA
1 TCTTTCCAAGACTCAGGCTGTATCAAGACAGGGGCCTCAGTCA
* * * * *
18269250 TCTTTCCCAGACTCAGGTTGTATTAAGATAGGGGCTTCAGTCA
1 TCTTTCCAAGACTCAGGCTGTATCAAGACAGGGGCCTCAGTCA
18269293 GAACATTCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.29
Consensus pattern (43 bp):
TCTTTCCAAGACTCAGGCTGTATCAAGACAGGGGCCTCAGTCA
Found at i:18269324 original size:20 final size:20
Alignment explanation
Indices: 18269299--18269343 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
18269289 GTCAGAACAT
18269299 TCTTAAGCTTCTCAAAACTC
1 TCTTAAGCTTCTCAAAACTC
18269319 TCTTAAGCTTCTCAAAACTC
1 TCTTAAGCTTCTCAAAACTC
18269339 TCTTA
1 TCTTA
18269344 TTGTGTATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.04, T:0.38
Consensus pattern (20 bp):
TCTTAAGCTTCTCAAAACTC
Found at i:18290272 original size:44 final size:45
Alignment explanation
Indices: 18290217--18290302 Score: 122
Period size: 44 Copynumber: 1.9 Consensus size: 45
18290207 TGGATGTCAC
18290217 ATGCATCGCATCCATAATGAAC-TCGAACCAACTCAACGAGCTTGG
1 ATGCATCGCATCCATAATGAACTTCG-ACCAACTCAACGAGCTTGG
* * *
18290262 ATGC-TCGCATCTATAATGAACTTTGACCAACTCAGCGAGCT
1 ATGCATCGCATCCATAATGAACTTCGACCAACTCAACGAGCT
18290303 CAGATGCTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
44 31 0.84
45 6 0.16
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (45 bp):
ATGCATCGCATCCATAATGAACTTCGACCAACTCAACGAGCTTGG
Found at i:18290309 original size:44 final size:45
Alignment explanation
Indices: 18290217--18290397 Score: 127
Period size: 45 Copynumber: 4.0 Consensus size: 45
18290207 TGGATGTCAC
* **
18290217 ATGCATCGCATCCATAATGAAC-TCGAACCAACTCAACGAGCTTGG
1 ATGCATCGCATCTATAATGAACTTCG-ACCAACTCAACGAGCTCAG
* *
18290262 ATGC-TCGCATCTATAATGAACTTTGACCAACTCAGCGAGCTCAG
1 ATGCATCGCATCTATAATGAACTTCGACCAACTCAACGAGCTCAG
* * * * * * * * *
18290306 ATGCTTCACATATATCACGAACTTGGACCAACTTAACAAGTTCAG
1 ATGCATCGCATCTATAATGAACTTCGACCAACTCAACGAGCTCAG
* * * ** *
18290351 ATTTC-TCACATATACCACGAAC-TCGGACCAACTCAACGAGCTCAG
1 A-TGCATCGCATCTATAATGAACTTC-GACCAACTCAACGAGCTCAG
18290396 AT
1 AT
18290398 TTCTAAATTC
Statistics
Matches: 112, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
44 38 0.34
45 72 0.64
46 2 0.02
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (45 bp):
ATGCATCGCATCTATAATGAACTTCGACCAACTCAACGAGCTCAG
Found at i:18290398 original size:45 final size:45
Alignment explanation
Indices: 18290286--18290401 Score: 153
Period size: 45 Copynumber: 2.6 Consensus size: 45
18290276 AATGAACTTT
* * * *
18290286 GACCAACTCAGCGAGCTCAGA-TGCTTCACATATATCACGAACTTG
1 GACCAACTCAACGAGCTCAGATTTC-TCACATATACCACGAACTCG
* * *
18290331 GACCAACTTAACAAGTTCAGATTTCTCACATATACCACGAACTCG
1 GACCAACTCAACGAGCTCAGATTTCTCACATATACCACGAACTCG
18290376 GACCAACTCAACGAGCTCAGATTTCT
1 GACCAACTCAACGAGCTCAGATTTCT
18290402 AAATTCCTAG
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
45 58 0.97
46 2 0.03
ACGTcount: A:0.33, C:0.29, G:0.15, T:0.23
Consensus pattern (45 bp):
GACCAACTCAACGAGCTCAGATTTCTCACATATACCACGAACTCG
Found at i:18294823 original size:37 final size:37
Alignment explanation
Indices: 18294756--18294867 Score: 125
Period size: 37 Copynumber: 2.9 Consensus size: 37
18294746 ATTTGATGTG
* *
18294756 TATCCGGGCTTAAAGACCTGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCA-GCTTCGTGCTGGTAAAA
**
18294796 TATCCGGGTTAAATCCCGCAGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGCTTCGTGCTGGTAAAA
* * *
18294833 TATCCGGGATAAATCCCGCAAGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGC-AGCTTCGTGCTGGTA
18294868 TTATATTCGG
Statistics
Matches: 64, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
37 33 0.52
38 18 0.28
39 5 0.08
40 8 0.12
ACGTcount: A:0.23, C:0.24, G:0.26, T:0.27
Consensus pattern (37 bp):
TATCCGGGTTAAATCCCGCAGCTTCGTGCTGGTAAAA
Found at i:18294872 original size:38 final size:37
Alignment explanation
Indices: 18294784--18294878 Score: 127
Period size: 37 Copynumber: 2.5 Consensus size: 37
18294774 TGCAGGCTTC
** * * *
18294784 GTGCTGGTAAAATATCCGGGTTAAATCCCGCAGCTTC
1 GTGCTGGTATTATATCCGGGATAAATCCCGCAGCCTA
18294821 GTGCTGGTATTATATCCGGGATAAATCCCGCAAGCCTA
1 GTGCTGGTATTATATCCGGGATAAATCCCGC-AGCCTA
*
18294859 GTGCTGGTATTATATTCGGG
1 GTGCTGGTATTATATCCGGG
18294879 CCTTCGTGCC
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
37 28 0.55
38 23 0.45
ACGTcount: A:0.23, C:0.21, G:0.26, T:0.29
Consensus pattern (37 bp):
GTGCTGGTATTATATCCGGGATAAATCCCGCAGCCTA
Found at i:18294921 original size:43 final size:43
Alignment explanation
Indices: 18294859--18295079 Score: 146
Period size: 43 Copynumber: 4.9 Consensus size: 43
18294849 CGCAAGCCTA
*
18294859 GTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTAGCAGGCTTC
1 GTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTC
18294900 GTGCTGGTGATGTGTATTCGGGCCTTCGTGCCGGT-G-ATGTGCATTC
1 GTGCTGGTGATGTGTATTCGGGCCTTCGTGCC--TAGCA-G-GC-TTC
* * * ** * * ** *
18294946 GGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGT-GATGTGTATTCAGGCCTTC
1 GTG-C-TGGTG-AT-GT-GTATTCGGGCC-TTCG-TGCCTA-GCAGG-CTTC
* *
18294997 GTGCCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAGGCTTC
1 GTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTC
* *
18295040 GTGCCGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGC
1 GTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGC
18295080 GTAATGCTGG
Statistics
Matches: 136, Mismatches: 25, Indels: 36
0.69 0.13 0.18
Matches are distributed among these distances:
41 8 0.06
42 2 0.01
43 62 0.46
44 6 0.04
45 8 0.06
46 13 0.10
47 3 0.02
48 5 0.04
49 4 0.03
50 4 0.03
51 15 0.11
52 5 0.04
53 1 0.01
ACGTcount: A:0.10, C:0.24, G:0.34, T:0.32
Consensus pattern (43 bp):
GTGCTGGTGATGTGTATTCGGGCCTTCGTGCCTAGCAGGCTTC
Found at i:18294935 original size:27 final size:27
Alignment explanation
Indices: 18294896--18294958 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
18294886 GCCTAGCAGG
* *
18294896 CTTCGTGCTGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGCATTCGGGC
18294923 CTTCGTGCCGGTGATGTGCATTCGGGC
1 CTTCGTGCCGGTGATGTGCATTCGGGC
18294950 CTTCGTGCC
1 CTTCGTGCC
18294959 TAGTAGGCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.06, C:0.25, G:0.35, T:0.33
Consensus pattern (27 bp):
CTTCGTGCCGGTGATGTGCATTCGGGC
Found at i:18294985 original size:70 final size:70
Alignment explanation
Indices: 18294872--18295071 Score: 346
Period size: 70 Copynumber: 2.9 Consensus size: 70
18294862 CTGGTATTAT
*
18294872 ATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCTGGTGATGTGTATTCGGGCCTTCGTGCCGGTGA
1 ATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCGGTGA
18294937 TGTGC
66 TGTGC
* *
18294942 ATTCGGGCCTTCGTGCCTAGTAGGCTTCGTGCCGGTGATGTGTATTCAGGCCTTCGTGCCGGTGA
1 ATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCGGTGA
*
18295007 TGTGT
66 TGTGC
* *
18295012 ATTCGGGCCTTCATGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTTGTGCC
1 ATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCC
18295072 TAGCAGGCGT
Statistics
Matches: 122, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 122 1.00
ACGTcount: A:0.10, C:0.24, G:0.34, T:0.32
Consensus pattern (70 bp):
ATTCGGGCCTTCGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCGGTGA
TGTGC
Found at i:18295000 original size:27 final size:27
Alignment explanation
Indices: 18294966--18295028 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
18294956 GCCTAGTAGG
18294966 CTTCGTGCCGGTGATGTGTATTCAGGC
1 CTTCGTGCCGGTGATGTGTATTCAGGC
*
18294993 CTTCGTGCCGGTGATGTGTATTCGGGC
1 CTTCGTGCCGGTGATGTGTATTCAGGC
*
18295020 CTTCATGCC
1 CTTCGTGCC
18295029 TAGCAGGCTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.10, C:0.25, G:0.32, T:0.33
Consensus pattern (27 bp):
CTTCGTGCCGGTGATGTGTATTCAGGC
Found at i:18295092 original size:43 final size:43
Alignment explanation
Indices: 18294998--18295092 Score: 136
Period size: 43 Copynumber: 2.2 Consensus size: 43
18294988 CAGGCCTTCG
* **
18294998 TGCCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAGGCTTCG
1 TGCCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAGGCGTAA
**
18295041 TGCCGGTGATGTGTATTCGGGCCTTTGTGCCTAGCAGGCGTAA
1 TGCCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAGGCGTAA
*
18295084 TGCTGGTGA
1 TGCCGGTGA
18295093 AATGATATGT
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.13, C:0.22, G:0.35, T:0.31
Consensus pattern (43 bp):
TGCCGGTGATGTGTATTCGGGCCTTCATGCCTAGCAGGCGTAA
Found at i:18301963 original size:15 final size:15
Alignment explanation
Indices: 18301913--18301985 Score: 58
Period size: 15 Copynumber: 4.8 Consensus size: 15
18301903 TGGTATTGTG
**
18301913 TCTTGGATTTCTGAA
1 TCTTGGATTTCTCTA
*
18301928 TCTTAGGAGTTTCTTTA
1 TCTT-GGA-TTTCTCTA
*
18301945 TCTTGGATTTCTCTG
1 TCTTGGATTTCTCTA
* *
18301960 TCTTGGACTTCTTTA
1 TCTTGGATTTCTCTA
*
18301975 T-TTGGTTTTCT
1 TCTTGGATTTCT
18301986 TGTCATTTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
14 8 0.17
15 23 0.49
16 6 0.13
17 10 0.21
ACGTcount: A:0.12, C:0.15, G:0.18, T:0.55
Consensus pattern (15 bp):
TCTTGGATTTCTCTA
Found at i:18304414 original size:39 final size:39
Alignment explanation
Indices: 18304360--18304526 Score: 244
Period size: 39 Copynumber: 4.3 Consensus size: 39
18304350 TTCAGTGATG
* *
18304360 ATTATATCCGGACTTAGGGTCCGCAGGCTATATGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
** *
18304399 ATTATATTTGGACTTAGGGTCCGCAGGCTATGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
18304438 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
* * *
18304477 ATTATAACCGGACTTAAGGTCTGCAGGCTACGTGCTGGA
1 ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
* *
18304516 AATATGTCCGG
1 ATTATATCCGG
18304527 GCTAAAATCC
Statistics
Matches: 116, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 116 1.00
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.29
Consensus pattern (39 bp):
ATTATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGA
Found at i:18304553 original size:78 final size:78
Alignment explanation
Indices: 18304362--18304564 Score: 207
Period size: 78 Copynumber: 2.6 Consensus size: 78
18304352 CAGTGATGAT
*** *** *
18304362 TATATCCGGACTTAGGGTCCGCAGGCTAT-ATGCTGGAATTATATTTGGACTTAGGGTCCGCAGG
1 TATATCCGGACTTAAAATCCGCAGGCTATGA-GCTGGAATTATAACCGGACTTAAGGTCCGCAGG
* *
18304426 CTATGTGCTGGAAT
65 CTACGTGCTGGAAA
** * *
18304440 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAATTATAACCGGACTTAAGGTCTGCAGGC
1 TATATCCGGACTTAAAATCCGCAGGCTATGAGCTGGAATTATAACCGGACTTAAGGTCCGCAGGC
18304505 TACGTGCTGGAAA
66 TACGTGCTGGAAA
* * *
18304518 TATGTCCGGGC-TAAAATCCCGCAGGCT-TCGAGCTGGTATTAT-ACCGG
1 TATATCCGGACTTAAAAT-CCGCAGGCTAT-GAGCTGGAATTATAACCGG
18304565 GTTTAAATTT
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
77 10 0.09
78 97 0.91
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (78 bp):
TATATCCGGACTTAAAATCCGCAGGCTATGAGCTGGAATTATAACCGGACTTAAGGTCCGCAGGC
TACGTGCTGGAAA
Found at i:18306755 original size:31 final size:31
Alignment explanation
Indices: 18306712--18306888 Score: 266
Period size: 31 Copynumber: 5.7 Consensus size: 31
18306702 TCAGTCTCGA
18306712 CATAT-ACTGGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
18306742 CATATCACTGGGCCGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
18306773 CATATCACTAGGCCGAAGCCTTATCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
** *
18306804 CATATTTCTGGGCCGAAGCCTTTTCATATAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
*
18306835 CATATCACTAGGCCGAAGCCTTTTCATAAAT
1 CATATCACTGGGCCGAAGCCTTTTCATAAAT
* *
18306866 CATATCATTGGGCCAAAGCCTTT
1 CATATCACTGGGCCGAAGCCTTT
18306889 ACTGTAAACG
Statistics
Matches: 132, Mismatches: 14, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
30 5 0.04
31 127 0.96
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (31 bp):
CATATCACTGGGCCGAAGCCTTTTCATAAAT
Found at i:18307121 original size:24 final size:24
Alignment explanation
Indices: 18307094--18307200 Score: 144
Period size: 25 Copynumber: 4.4 Consensus size: 24
18307084 CTGGAGGCCT
*
18307094 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTGATAAACTGGGGCAA
18307118 AGCCCTTTTGATAAACTGGGGCAA
1 AGCCCTTTTGATAAACTGGGGCAA
*
18307142 AGCCCTTTTCGGTAAACTGGGGCAA
1 AGCCCTTTT-GATAAACTGGGGCAA
* *
18307167 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-GATAAACTGGGGCAA
18307192 AGCCCTTTT
1 AGCCCTTTT
18307201 AGCACTTCCT
Statistics
Matches: 78, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
23 7 0.09
24 24 0.31
25 47 0.60
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTGATAAACTGGGGCAA
Found at i:18307163 original size:25 final size:25
Alignment explanation
Indices: 18307107--18307200 Score: 163
Period size: 25 Copynumber: 3.8 Consensus size: 25
18307097 CTCTTTTAAT
*
18307107 AACTGGGGCAAAGCCCTTTT-GATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
18307131 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
18307156 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
18307181 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
18307201 AGCACTTCCT
Statistics
Matches: 67, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
24 20 0.30
25 47 0.70
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:18308026 original size:26 final size:27
Alignment explanation
Indices: 18307993--18308064 Score: 71
Period size: 27 Copynumber: 2.7 Consensus size: 27
18307983 TATTACGGAA
*
18307993 CATA-AGGGCTTATT-C-GTCATTTTAC
1 CATACAGGGCTT-TTACGGTCACTTTAC
*
18308018 CATACAGGGGTTTTACGGTCACTTTAC
1 CATACAGGGCTTTTACGGTCACTTTAC
*
18308045 CCTACAGGGGC-TTTACGGTC
1 CATACA-GGGCTTTTACGGTC
18308065 TTTTTACCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
25 6 0.15
26 7 0.18
27 23 0.59
28 3 0.08
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CATACAGGGCTTTTACGGTCACTTTAC
Found at i:18308038 original size:27 final size:27
Alignment explanation
Indices: 18308008--18308072 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
18307998 GGGCTTATTC
*
18308008 GTCATTTTACCATACAGGGGTTTTACG
1 GTCATTTTACCATACAGGGGCTTTACG
* *
18308035 GTCACTTTACCCTACAGGGGCTTTACG
1 GTCATTTTACCATACAGGGGCTTTACG
*
18308062 GTCTTTTTACC
1 GTCATTTTACC
18308073 TAATAGGGGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGCTTTACG
Found at i:18308156 original size:27 final size:27
Alignment explanation
Indices: 18308126--18308223 Score: 110
Period size: 27 Copynumber: 3.6 Consensus size: 27
18308116 GTAAATCTAC
18308126 AAACCAAGGGTATTTC-AGTAATTTTGT
1 AAACCAAGGGTATTTCTA-TAATTTTGT
*
18308153 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
*
18308179 AGAAAGTCAAGGGTATTTCTATAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
18308209 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
18308224 TGGTAATTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 10
0.82 0.05 0.13
Matches are distributed among these distances:
26 1 0.02
27 33 0.53
28 7 0.11
29 20 0.32
30 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:18308230 original size:27 final size:27
Alignment explanation
Indices: 18308200--18308339 Score: 142
Period size: 27 Copynumber: 5.2 Consensus size: 27
18308190 GGTATTTCTA
**
18308200 TAATTTTGTAAATCAGGGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
* * *
18308227 TAATTTTACAAAT-TGAGGGTATTTCGA
1 TAATTTTACAAATCAG-GGGTATTTTGG
* * *
18308254 TAATTTCACAAACCAGTGGTATTTTGG
1 TAATTTTACAAATCAGGGGTATTTTGG
18308281 TAATTTTACAAA-CTAGGGGTATTTTGG
1 TAATTTTACAAATC-AGGGGTATTTTGG
* *
18308308 TAATTTTACAAA-CCGGAGATATTTTGG
1 TAATTTTACAAATCAGG-GGTATTTTGG
18308335 TAATT
1 TAATT
18308340 CTATCCTAAG
Statistics
Matches: 94, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
26 4 0.04
27 89 0.95
28 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
TAATTTTACAAATCAGGGGTATTTTGG
Found at i:18308231 original size:56 final size:54
Alignment explanation
Indices: 18308123--18308292 Score: 175
Period size: 54 Copynumber: 3.1 Consensus size: 54
18308113 TTGGTAAATC
* * *
18308123 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCA-TAATTTTGTAAACCAGTGGTATTT-TGGTAATTTT
* * *
18308178 TAGAAAGTCAAGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTC-ATAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
** ***
18308233 TACAAATTGAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTC-ATAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
18308287 TACAAA
1 TACAAA
18308293 CTAGGGGTAT
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
54 46 0.47
55 14 0.14
56 36 0.37
57 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCATAATTTTGTAAACCAGTGGTATTTTGGTAATTTT
Found at i:18308275 original size:54 final size:53
Alignment explanation
Indices: 18308188--18308339 Score: 178
Period size: 54 Copynumber: 2.8 Consensus size: 53
18308178 TAGAAAGTCA
* ** * * *
18308188 AGGGTATTTCTATAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATT
1 AGGGTATTTCGATAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACT
* *
18308241 GAGGGTATTTCGATAATTTCACAAACCAGTGGTATTTTGGTAATTTTACAAACT
1 -AGGGTATTTCGATAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACT
* * * *
18308295 AGGGGTATTTTGGTAATTTTACAAACCGGAGATATTTTGGTAATT
1 A-GGGTATTTCGATAATTTTACAAACCAGAGGTATTTTGGTAATT
18308340 CTATCCTAAG
Statistics
Matches: 84, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 83 0.99
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (53 bp):
AGGGTATTTCGATAATTTTACAAACCAGAGGTATTTTGGTAATTTTACAAACT
Found at i:18308473 original size:27 final size:27
Alignment explanation
Indices: 18308370--18308486 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
18308360 GTAATTTCAC
* *
18308370 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* * * *
18308397 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
18308424 AATTGAGGGTAAAACGCTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTATA
* *
18308451 AATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGGTAATTCTATA
18308478 AATCGAGGG
1 AATCGAGGG
18308487 CATTTCAGTA
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTATA
Found at i:18308486 original size:54 final size:54
Alignment explanation
Indices: 18308370--18308486 Score: 162
Period size: 54 Copynumber: 2.2 Consensus size: 54
18308360 GTAATTTCAC
* * * * * **
18308370 AATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAACGCTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
*
18308424 AATTGAGGGTAAAACGCTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
1 AATCGAGGGTAAAACGCTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
18308478 AATCGAGGG
1 AATCGAGGG
18308487 CATTTCAGTA
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.29
Consensus pattern (54 bp):
AATCGAGGGTAAAACGCTAATTCTATAAATCGAGGGTAAAATGGTAATTCTACA
Found at i:18313850 original size:20 final size:20
Alignment explanation
Indices: 18313825--18313874 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
18313815 CATAAAAAAT
*
18313825 TATCGATACCTT-TCACAAGG
1 TATCGATACCTTACCACAA-G
*
18313845 TATCGATAAACTTACCACAAG
1 TATCGAT-ACCTTACCACAAG
18313866 TATCGATAC
1 TATCGATAC
18313875 TAGGGATAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
20 8 0.32
21 12 0.48
22 5 0.20
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.28
Consensus pattern (20 bp):
TATCGATACCTTACCACAAG
Found at i:18315038 original size:22 final size:22
Alignment explanation
Indices: 18315011--18315063 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
18315001 CCTAGTTCTC
*
18315011 TTTATCACAATTCACGAGCACA
1 TTTATCACAATTCACAAGCACA
18315033 TTTATCACAATTCACAAGCACA
1 TTTATCACAATTCACAAGCACA
18315055 TTTATCACA
1 TTTATCACA
18315064 TATTTAGCAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.38, C:0.26, G:0.06, T:0.30
Consensus pattern (22 bp):
TTTATCACAATTCACAAGCACA
Found at i:18319120 original size:53 final size:53
Alignment explanation
Indices: 18318942--18319144 Score: 194
Period size: 53 Copynumber: 3.8 Consensus size: 53
18318932 GGGTTTAAGG
* * * * *
18318942 ATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGGCAAGGA
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGCAA-GA
* * * * * *
18318997 A-ATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAA-A
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAGA
* * * *
18319050 GATCCCATGTAAGACCATACCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGA
1 -ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAGA
* *
18319104 ATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
18319145 TAAAAAGGAA
Statistics
Matches: 118, Mismatches: 25, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
53 45 0.38
54 35 0.30
55 38 0.32
ACGTcount: A:0.38, C:0.19, G:0.23, T:0.21
Consensus pattern (53 bp):
ATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAGA
Found at i:18326522 original size:53 final size:53
Alignment explanation
Indices: 18326341--18326547 Score: 209
Period size: 53 Copynumber: 3.8 Consensus size: 53
18326331 ATTAGGGTTT
* * * * * *
18326341 AAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTACAAGAC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGGC
* * * * * * *
18326395 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGC
* * *
18326450 AAAGAT-CCTATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGC
1 AAGGATACC-ATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
* *
18326503 AAGGATACCATGTAAGACCATGTCAAGACATGGCGATGGTAAGTT
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
18326548 TAAAAAGGAA
Statistics
Matches: 123, Mismatches: 26, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
53 44 0.36
54 41 0.33
55 38 0.31
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGC
Found at i:18328151 original size:39 final size:38
Alignment explanation
Indices: 18328095--18328194 Score: 112
Period size: 39 Copynumber: 2.6 Consensus size: 38
18328085 TAAATATAAT
* * * *
18328095 AATTATAATTACCATAATTATAATAATGTTTGA-CAGGAA
1 AATTACAATTACAATAATTATAATAATATTCGATC--GAA
* *
18328134 AATTACCATTACAATAATTATAATAATATTCGATCGTA
1 AATTACAATTACAATAATTATAATAATATTCGATCGAA
*
18328172 AATTATAATTACAATAATTATAA
1 AATTACAATTACAATAATTATAA
18328195 CAAGGATTTC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
38 23 0.44
39 28 0.54
40 1 0.02
ACGTcount: A:0.48, C:0.09, G:0.06, T:0.37
Consensus pattern (38 bp):
AATTACAATTACAATAATTATAATAATATTCGATCGAA
Found at i:18329327 original size:31 final size:30
Alignment explanation
Indices: 18329274--18329331 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
18329264 CCTTTGTATA
18329274 ATTTTCTATTTAGTTTAAATTTTATTTTTT
1 ATTTTCTATTTAGTTTAAATTTTATTTTTT
*
18329304 ATTTTCT-TTTAGGGTTTAGATTTTATTT
1 ATTTTCTATTTA--GTTTAAATTTTATTT
18329332 ACATTTGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 4 0.16
30 7 0.28
31 14 0.56
ACGTcount: A:0.21, C:0.03, G:0.09, T:0.67
Consensus pattern (30 bp):
ATTTTCTATTTAGTTTAAATTTTATTTTTT
Found at i:18341588 original size:12 final size:12
Alignment explanation
Indices: 18341573--18341598 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18341563 GTAATGGACA
18341573 TTGGACATTTAT
1 TTGGACATTTAT
18341585 TTGGACATTTAT
1 TTGGACATTTAT
18341597 TT
1 TT
18341599 TGGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:18347918 original size:16 final size:16
Alignment explanation
Indices: 18347897--18347933 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
18347887 GTAGATCAGT
18347897 AAAAGCCGAAATACCA
1 AAAAGCCGAAATACCA
*
18347913 AAAAGCTGAAATACCA
1 AAAAGCCGAAATACCA
18347929 AAAAG
1 AAAAG
18347934 TCAAAAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.59, C:0.19, G:0.14, T:0.08
Consensus pattern (16 bp):
AAAAGCCGAAATACCA
Found at i:18348197 original size:28 final size:27
Alignment explanation
Indices: 18348163--18348240 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 27
18348153 ATAAATGTGA
* *
18348163 ATTGGGCTTGATGGGCCATATAAACATT
1 ATTGGGCCT-ATGGGCCATATAAACATG
* * *
18348191 TTTGGGCCTAACGGGCCATATAAATATG
1 ATTGGGCCT-ATGGGCCATATAAACATG
18348219 ATTGGGCCTAGTGGGCCATATA
1 ATTGGGCCTA-TGGGCCATATA
18348241 TAGTTATGTG
Statistics
Matches: 41, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
27 1 0.02
28 40 0.98
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (27 bp):
ATTGGGCCTATGGGCCATATAAACATG
Found at i:18349095 original size:11 final size:11
Alignment explanation
Indices: 18349079--18349103 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
18349069 TCGTACCTAG
18349079 AAGAAAAAAAA
1 AAGAAAAAAAA
18349090 AAGAAAAAAAA
1 AAGAAAAAAAA
18349101 AAG
1 AAG
18349104 GCTTCATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (11 bp):
AAGAAAAAAAA
Found at i:18350359 original size:40 final size:40
Alignment explanation
Indices: 18350300--18350447 Score: 242
Period size: 40 Copynumber: 3.7 Consensus size: 40
18350290 TATTCGGATG
18350300 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** * *
18350340 ATGTCCGGGCTAAGTCCCGAAGGCATTTGTGTGAGTTACC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
18350380 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGCGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
18350420 ATAACCGGGCTAAGTCCCGAAGGCATTT
1 ATAACCGGGCTAAGTCCCGAAGGCATTT
18350448 AAGCGATTAG
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:18352095 original size:63 final size:63
Alignment explanation
Indices: 18351996--18352180 Score: 370
Period size: 63 Copynumber: 2.9 Consensus size: 63
18351986 CTACCATGGA
18351996 TGTGTATCGGTTGGGTGGGTCGATATTTATATCCCCACATGATGTGTCAGGGGACAGAGCTGG
1 TGTGTATCGGTTGGGTGGGTCGATATTTATATCCCCACATGATGTGTCAGGGGACAGAGCTGG
18352059 TGTGTATCGGTTGGGTGGGTCGATATTTATATCCCCACATGATGTGTCAGGGGACAGAGCTGG
1 TGTGTATCGGTTGGGTGGGTCGATATTTATATCCCCACATGATGTGTCAGGGGACAGAGCTGG
18352122 TGTGTATCGGTTGGGTGGGTCGATATTTATATCCCCACATGATGTGTCAGGGGACAGAG
1 TGTGTATCGGTTGGGTGGGTCGATATTTATATCCCCACATGATGTGTCAGGGGACAGAG
18352181 GATGGATTTT
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 122 1.00
ACGTcount: A:0.19, C:0.16, G:0.35, T:0.30
Consensus pattern (63 bp):
TGTGTATCGGTTGGGTGGGTCGATATTTATATCCCCACATGATGTGTCAGGGGACAGAGCTGG
Found at i:18355236 original size:16 final size:16
Alignment explanation
Indices: 18355215--18355257 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
18355205 GTAGATCGGC
*
18355215 AAAAGCCGAAATG-CA
1 AAAAGCCAAAATGTCA
18355230 GAAAAGCCAAAATGTCA
1 -AAAAGCCAAAATGTCA
18355247 AAAAGCCAAAA
1 AAAAGCCAAAA
18355258 GTTTGACTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 23 0.92
17 2 0.08
ACGTcount: A:0.58, C:0.19, G:0.16, T:0.07
Consensus pattern (16 bp):
AAAAGCCAAAATGTCA
Found at i:18355553 original size:28 final size:28
Alignment explanation
Indices: 18355469--18355558 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 28
18355459 TGAGTATGAC
*
18355469 TATAAATGTGAATTGGG-CTTGATGGGCCA
1 TATAAATGTG-ATTGGGCCTAG-TGGGCCA
* * *
18355498 TATAAACGTGATTTGGGCCTAATAGGCCA
1 TATAAATGTGA-TTGGGCCTAGTGGGCCA
18355527 TATAAATGTGATTGGGCCTAGTGGGCCA
1 TATAAATGTGATTGGGCCTAGTGGGCCA
18355555 TATA
1 TATA
18355559 CAAGTATGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
28 20 0.38
29 30 0.58
30 2 0.04
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.30
Consensus pattern (28 bp):
TATAAATGTGATTGGGCCTAGTGGGCCA
Found at i:18360270 original size:23 final size:23
Alignment explanation
Indices: 18360244--18360290 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
18360234 TTGTATGTTA
18360244 AGCTTTTGGCATGATTAATTTGG
1 AGCTTTTGGCATGATTAATTTGG
18360267 AGCTTTTGGCATGATTAATTTGG
1 AGCTTTTGGCATGATTAATTTGG
18360290 A
1 A
18360291 TTGAGTGGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.23, C:0.09, G:0.26, T:0.43
Consensus pattern (23 bp):
AGCTTTTGGCATGATTAATTTGG
Found at i:18361157 original size:12 final size:12
Alignment explanation
Indices: 18361142--18361167 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
18361132 GTAATAGACA
18361142 TTGGACATTTAT
1 TTGGACATTTAT
18361154 TTGGACATTTAT
1 TTGGACATTTAT
18361166 TT
1 TT
18361168 TGGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:18362677 original size:15 final size:15
Alignment explanation
Indices: 18362634--18362682 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
18362624 TCTGAAACAG
* *
18362634 TAGATAGTGAAACTT
1 TAGATTGTGAAACTA
* *
18362649 TACATTTTGAAAACTA
1 TAGATTGTG-AAACTA
18362665 TAGATTGTGAAACTA
1 TAGATTGTGAAACTA
18362680 TAG
1 TAG
18362683 TGAAACTGTG
Statistics
Matches: 27, Mismatches: 6, Indels: 2
0.77 0.17 0.06
Matches are distributed among these distances:
15 15 0.56
16 12 0.44
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.35
Consensus pattern (15 bp):
TAGATTGTGAAACTA
Found at i:18363687 original size:22 final size:22
Alignment explanation
Indices: 18363659--18363703 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
18363649 TTTAGCATGG
18363659 AAGTGTTATTGCAGTCACTAAC
1 AAGTGTTATTGCAGTCACTAAC
18363681 AAGTGTTATTGCAGTCACTAAC
1 AAGTGTTATTGCAGTCACTAAC
18363703 A
1 A
18363704 TTGGAAAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.31
Consensus pattern (22 bp):
AAGTGTTATTGCAGTCACTAAC
Found at i:18369934 original size:25 final size:25
Alignment explanation
Indices: 18369905--18369952 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
18369895 TTATAATATG
* * *
18369905 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
18369930 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
18369953 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:18370019 original size:20 final size:20
Alignment explanation
Indices: 18369989--18370075 Score: 156
Period size: 20 Copynumber: 4.3 Consensus size: 20
18369979 ATTTTGATAA
*
18369989 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
18370009 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
18370029 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
18370049 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
18370069 ACATGAT
1 ACATGAT
18370076 GTATTCATAA
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 64 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Done.