Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 71 of 322
Found at i:22692680 original size:52 final size:52
Alignment explanation
Indices: 22692602--22692700 Score: 171
Period size: 52 Copynumber: 1.9 Consensus size: 52
22692592 AACCTCTTTA
22692602 CTCGGCCTCGAGTGATTGGTCCCAACGGCAGCTCCAAGGGTTCGGCATTTTG
1 CTCGGCCTCGAGTGATTGGTCCCAACGGCAGCTCCAAGGGTTCGGCATTTTG
* * *
22692654 CTCGGGCTTGAGTGATTGGTCCCAACGGCAGCTCCAAGGGTTTGGCA
1 CTCGGCCTCGAGTGATTGGTCCCAACGGCAGCTCCAAGGGTTCGGCA
22692701 ACTAGCTCCT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.16, C:0.27, G:0.32, T:0.24
Consensus pattern (52 bp):
CTCGGCCTCGAGTGATTGGTCCCAACGGCAGCTCCAAGGGTTCGGCATTTTG
Found at i:22695608 original size:27 final size:28
Alignment explanation
Indices: 22695524--22695621 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
22695514 CATGAGATTG
* * * *
22695524 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
22695553 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
22695581 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22695608 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
22695622 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22695632 original size:27 final size:27
Alignment explanation
Indices: 22695552--22695634 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
22695542 TAAATTGTAC
* *
22695552 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
22695580 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
22695607 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
22695634 A
1 A
22695635 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:22695635 original size:29 final size:27
Alignment explanation
Indices: 22695524--22695635 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
22695514 CATGAGATTG
** * *
22695524 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
22695553 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
22695581 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
22695608 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
22695636 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:22698403 original size:19 final size:19
Alignment explanation
Indices: 22698367--22698404 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
22698357 TGGGCCACGT
*
22698367 TGGGTCAAAATGGGTCGTG
1 TGGGTCAAAATGGCTCGTG
22698386 TGGG-CAAAATAGGCTCGTG
1 TGGGTCAAAAT-GGCTCGTG
22698405 GGCCTCGCAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.24, C:0.13, G:0.39, T:0.24
Consensus pattern (19 bp):
TGGGTCAAAATGGCTCGTG
Found at i:22698651 original size:27 final size:27
Alignment explanation
Indices: 22698620--22698711 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
22698610 CCCCAAAATA
* *
22698620 GGTAAAATGATCATAATACCCCTATAG
1 GGTAAAATGACCATAATACCCCTGTAG
*
22698647 GGTAAAATGACCATAATGCCCCTGTAG
1 GGTAAAATGACCATAATACCCCTGTAG
* *
22698674 GGTAAAATGACCGTAATACCCCTGTAT
1 GGTAAAATGACCATAATACCCCTGTAG
22698701 GGTAAAATGAC
1 GGTAAAATGAC
22698712 GATTATGCCC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
GGTAAAATGACCATAATACCCCTGTAG
Found at i:22698891 original size:27 final size:26
Alignment explanation
Indices: 22698847--22698947 Score: 96
Period size: 27 Copynumber: 3.8 Consensus size: 26
22698837 ATGGAGGAAG
* *
22698847 TACTG-TACTGGTGACTATGTCACAT
1 TACTGTTACTGGTGGCTATGCCACAT
*
22698872 TCACTGTTACTAGTGGCTATGCCACAAT
1 T-ACTGTTACTGGTGGCTATGCCAC-AT
* *
22698900 TACTGATACTGGTGGCTTTGCCACATT
1 TACTGTTACTGGTGGCTATGCCACA-T
* * *
22698927 TACTGTTTCTGATAGCTATGC
1 TACTGTTACTGGTGGCTATGC
22698948 TGCATTATTA
Statistics
Matches: 61, Mismatches: 11, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
25 1 0.02
26 5 0.08
27 52 0.85
28 3 0.05
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
TACTGTTACTGGTGGCTATGCCACAT
Found at i:22699151 original size:30 final size:27
Alignment explanation
Indices: 22699093--22699155 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 27
22699083 CACTATACTG
*
22699093 ATACTGTATAGGGCTTAGGCCCACACT
1 ATACTGTATAGGGCTAAGGCCCACACT
* *
22699120 ATTACTGTATAGGGCTAAAAGGCCTAGACT
1 A-TACTGTATAGGGCT--AAGGCCCACACT
22699150 ATACTG
1 ATACTG
22699156 ATACTGTATA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 1 0.03
28 14 0.47
29 5 0.17
30 10 0.33
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (27 bp):
ATACTGTATAGGGCTAAGGCCCACACT
Found at i:22701158 original size:12 final size:12
Alignment explanation
Indices: 22701143--22701185 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
22701133 TTCCACTTTC
22701143 TTTTCTTGCTCT
1 TTTTCTTGCTCT
*
22701155 TTTTCTTTCAT-T
1 TTTTCTTGC-TCT
22701167 TTTTCTTGCTCT
1 TTTTCTTGCTCT
22701179 TTTTCTT
1 TTTTCTT
22701186 TTGACTTTTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 1 0.04
12 25 0.93
13 1 0.04
ACGTcount: A:0.02, C:0.21, G:0.05, T:0.72
Consensus pattern (12 bp):
TTTTCTTGCTCT
Found at i:22701170 original size:24 final size:27
Alignment explanation
Indices: 22701125--22701186 Score: 94
Period size: 24 Copynumber: 2.4 Consensus size: 27
22701115 ACATTTCCCC
22701125 CTTTTTCTTTCCACTTTCTTTTCTTGCT
1 CTTTTTCTTTCCAC-TTCTTTTCTTGCT
22701153 CTTTTTCTTT-CA-TT-TTTTCTTGCT
1 CTTTTTCTTTCCACTTCTTTTCTTGCT
22701177 CTTTTTCTTT
1 CTTTTTCTTT
22701187 TGACTTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
24 20 0.59
25 2 0.06
27 2 0.06
28 10 0.29
ACGTcount: A:0.03, C:0.24, G:0.03, T:0.69
Consensus pattern (27 bp):
CTTTTTCTTTCCACTTCTTTTCTTGCT
Found at i:22708211 original size:49 final size:49
Alignment explanation
Indices: 22708086--22708447 Score: 546
Period size: 47 Copynumber: 7.6 Consensus size: 49
22708076 CCCTTCGGGA
* * * *
22708086 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* * *
22708133 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
22708180 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
22708229 CTTATCACATATAT-T-CACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
* *
22708276 CTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
22708325 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
*
22708372 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
22708421 CTTATCAC--ATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
22708448 TATTCAAATA
Statistics
Matches: 290, Mismatches: 17, Indels: 16
0.90 0.05 0.05
Matches are distributed among these distances:
46 1 0.00
47 151 0.52
48 2 0.01
49 136 0.47
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
Found at i:22708248 original size:96 final size:96
Alignment explanation
Indices: 22708086--22708447 Score: 620
Period size: 96 Copynumber: 3.8 Consensus size: 96
22708076 CCCTTCGGGA
* * * * *
22708086 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
22708149 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
22708180 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATTC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
22708245 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* * *
22708276 CTTATCACATATATATACATTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
*
22708341 ACTTTCACATTCATCACATTGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
22708372 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
22708437 ACTTTCACATT
66 ACTTTCACATT
22708448 TATTCAAATA
Statistics
Matches: 252, Mismatches: 14, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
94 10 0.04
95 1 0.00
96 241 0.96
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22713274 original size:46 final size:45
Alignment explanation
Indices: 22713224--22713396 Score: 181
Period size: 46 Copynumber: 3.8 Consensus size: 45
22713214 TGGTTGAGCA
* *
22713224 TCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AAACG
* * *
22713270 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG-AA--A--CG
*
22713317 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGAGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGA-AACG
* * *
22713363 CCCGAGCTCGTTGAGTTGATTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
22713397 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 13, Indels: 16
0.79 0.10 0.12
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 59 0.56
47 29 0.27
48 3 0.03
49 1 0.01
50 5 0.05
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGAAACG
Found at i:22713380 original size:93 final size:93
Alignment explanation
Indices: 22713221--22713391 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
22713211 GGATGGTTGA
* * *
22713221 GCATCCGAACTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
22713286 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
22713314 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATG-AGAACGCCCGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCA-AACGCCCGAACTCGTTGAG
*
22713378 TTGATTCCGAGTTC
65 TTGAGTCCGAGTTC
22713392 ACTTAGGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:22716750 original size:27 final size:26
Alignment explanation
Indices: 22716684--22716797 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 26
22716674 GGAGGAAGCG
* * *
22716684 TTCTGGTGGTTATGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCT-A
*
22716712 TTCTGGTGGCTCCGCCACAAATATCTA
1 TTCTGGTGGCTCTGCCAC-AATATCTA
*
22716739 TTCTGGTGGCTCTGGCACAATATCTA
1 TTCTGGTGGCTCTGCCACAATATCTA
* *
22716765 TATCTGGTGACTCTGTCACAATATCTA
1 T-TCTGGTGGCTCTGCCACAATATCTA
22716792 TTCTGG
1 TTCTGG
22716798 CAGCCACGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
26 14 0.18
27 40 0.52
28 23 0.30
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (26 bp):
TTCTGGTGGCTCTGCCACAATATCTA
Found at i:22718359 original size:6 final size:6
Alignment explanation
Indices: 22718331--22718427 Score: 58
Period size: 6 Copynumber: 15.8 Consensus size: 6
22718321 AAGAAACATT
* * *
22718331 ATCAGA A-CTAGA ATCAAA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
22718380 ATCAGA AT-AAA TATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCAG
1 ATCAGA ATCAGA -ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAG
22718428 GTAACAGAAT
Statistics
Matches: 70, Mismatches: 11, Indels: 20
0.69 0.11 0.20
Matches are distributed among these distances:
5 6 0.09
6 55 0.79
7 6 0.09
8 2 0.03
9 1 0.01
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:22718383 original size:31 final size:30
Alignment explanation
Indices: 22718340--22718482 Score: 169
Period size: 31 Copynumber: 4.6 Consensus size: 30
22718330 TATCAGAACT
* *
22718340 AGAATCAAAATCAGAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAAT-AGAATCAGGTAAC
* *
22718371 AGAATCAGAATCAGAATAAATATCAGGTAAC
1 AGAATCAAAATCAGAATAGA-ATCAGGTAAC
*
22718402 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAAT-AGAATCAGGTAAC
* *
22718433 AGAATAAAAAATCAGAAATAGTATCAGGTAAC
1 AGAAT-CAAAATCAG-AATAGAATCAGGTAAC
22718465 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
22718483 GTGAATGCAA
Statistics
Matches: 98, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
30 2 0.02
31 58 0.59
32 35 0.36
33 3 0.03
ACGTcount: A:0.52, C:0.13, G:0.16, T:0.19
Consensus pattern (30 bp):
AGAATCAAAATCAGAATAGAATCAGGTAAC
Found at i:22718591 original size:55 final size:55
Alignment explanation
Indices: 22718507--22718615 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
22718497 AACCCAATCT
22718507 AGCCTATAACCAACCACTACACTCAACCCGTACCAGCCCTACACTCCATGTGGGC
1 AGCCTATAACCAACCACTACACTCAACCCGTACCAGCCCTACACTCCATGTGGGC
* *
22718562 AGCCTATAACCAACCGCTACACTCCACCCGTACCAGCCCTACACTCCATGTGGG
1 AGCCTATAACCAACCACTACACTCAACCCGTACCAGCCCTACACTCCATGTGGG
22718616 GAATAGCTCA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.28, C:0.42, G:0.14, T:0.17
Consensus pattern (55 bp):
AGCCTATAACCAACCACTACACTCAACCCGTACCAGCCCTACACTCCATGTGGGC
Found at i:22718716 original size:27 final size:26
Alignment explanation
Indices: 22718674--22718775 Score: 114
Period size: 27 Copynumber: 3.8 Consensus size: 26
22718664 GCTCAATTAT
* *
22718674 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGA-A
22718701 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
22718727 TAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAG-AA
* * *
22718755 CAGGTAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
22718776 TTAACAGAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 6 0.09
27 53 0.82
28 6 0.09
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.20
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:22718962 original size:22 final size:21
Alignment explanation
Indices: 22718934--22718998 Score: 60
Period size: 22 Copynumber: 3.0 Consensus size: 21
22718924 GCAAATACGT
22718934 TTGGCACACAACCATAATCAGG
1 TTGGCACA-AACCATAATCAGG
* *
22718956 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACA-AACCATAAT-CAGG
*
22718978 TTGACACAAAGCCATAATCAG
1 TTGGCACAAA-CCATAATCAG
22718999 AAGGCTTTAA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.09
22 29 0.85
23 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.22, T:0.20
Consensus pattern (21 bp):
TTGGCACAAACCATAATCAGG
Found at i:22719279 original size:16 final size:16
Alignment explanation
Indices: 22719254--22719284 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22719244 ATCCCAACCC
22719254 ATGCAACATGTCATGT
1 ATGCAACATGTCATGT
*
22719270 ATGCAGCATGTCATG
1 ATGCAACATGTCATG
22719285 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (16 bp):
ATGCAACATGTCATGT
Found at i:22719481 original size:27 final size:27
Alignment explanation
Indices: 22719425--22719970 Score: 489
Period size: 27 Copynumber: 20.3 Consensus size: 27
22719415 GGGGCAAAAT
* * * *
22719425 GGTAATTTTACCCCACA-AGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
22719451 AGTAATTCCACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
22719478 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
22719505 GGTAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
22719532 GATAATTTTTCCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
22719559 GGTAATTCCACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
22719586 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
22719613 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
22719640 GATAATTCTACCCTACAGGGGTATTGC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
22719667 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
22719694 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
22719721 GGTAATTCTACCCTACAGGGGTATTGGC
1 GGTAATTCTACCCTACAGGGGTATT-TC
* ** ** *
22719749 ATGTTCACATTCATCACATTA-A---CCATTGC
1 --GGT-A-ATTC-T-ACCCTACAGGGGTATTTC
*** * ** * * * **
22719778 CACACTT-T--GTTATATCGAGT-TTAA
1 GGTAATTCTACCCTACA-GGGGTATTTC
** * *
22719802 ATTTATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
22719829 GGTAATTCTACCCTACAGGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
22719856 GGTAATTCTACCCTACAAGGGTATTCC
1 GGTAATTCTACCCTACAGGGGTATTTC
22719883 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
22719910 GGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
22719937 GGTAATTCTACCATACAGAGATATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
22719964 GATAATT
1 GGTAATT
22719971 TTATAAATCG
Statistics
Matches: 429, Mismatches: 74, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
20 3 0.01
21 1 0.00
23 1 0.00
24 4 0.01
25 3 0.01
26 17 0.04
27 381 0.89
28 1 0.00
29 2 0.00
30 5 0.01
31 1 0.00
32 4 0.01
33 2 0.00
34 4 0.01
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:22720038 original size:27 final size:25
Alignment explanation
Indices: 22720003--22720349 Score: 171
Period size: 27 Copynumber: 12.8 Consensus size: 25
22719993 TAATTCTATC
22720003 AATCAAGGGTACTTTGGTAATTTTACA
1 AATC-AGGGTA-TTTGGTAATTTTACA
* **
22720030 AGTCGAGGGTATTTCAATAATTTTACA
1 AATC-AGGGTATTT-GGTAATTTTACA
** * * *
22720057 GGTCGAGGGTATTTCAGTAATTTCATA
1 AATC-AGGGTATTT-GGTAATTTTACA
*
22720084 AATCAGGGGTATTTTGGTAATTTCACA
1 AATCA-GGGTA-TTTGGTAATTTTACA
22720111 AATCAGGGGTATTTTGGTAATTTTACA
1 AATCA-GGGTA-TTTGGTAATTTTACA
**
22720138 AA-CTAGGGGTATTTTCATAATTTTACA
1 AATC-A-GGGTA-TTTGGTAATTTTACA
*
22720165 AA-CTAGGGGTATTTTGGTAATTTTATA
1 AATC-A-GGGTA-TTTGGTAATTTTACA
* *
22720192 AA-CAAAAGGTATTTTAGTAATTTTACA
1 AATC--AGGGTA-TTTGGTAATTTTACA
* **
22720219 AACCAGGAGTATTTTGGTAATTTTGTA
1 AATCAGG-GTA-TTTGGTAATTTTACA
*
22720246 AACCAAGGGTATTTTGGTAATTTTACA
1 AATC-AGGGTA-TTTGGTAATTTTACA
* *
22720273 AA-CTAGGGGTATTTTGGTGATTTTATA
1 AATC-A-GGGTA-TTTGGTAATTTTACA
* * *
22720300 AACCAAGGGTATTTTAGTGATTTTACA
1 AATC-AGGGTA-TTTGGTAATTTTACA
* *
22720327 AACCAGGGGCATTTTGGTAATTT
1 AATCA-GGGTA-TTTGGTAATTT
22720350 GGTAAACTAA
Statistics
Matches: 272, Mismatches: 37, Indels: 22
0.82 0.11 0.07
Matches are distributed among these distances:
26 10 0.04
27 252 0.93
28 10 0.04
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (25 bp):
AATCAGGGTATTTGGTAATTTTACA
Found at i:22720043 original size:81 final size:81
Alignment explanation
Indices: 22719958--22720139 Score: 206
Period size: 81 Copynumber: 2.2 Consensus size: 81
22719948 CATACAGAGA
* *
22719958 TATTTCGATAATTTTATAAATCGAGGGTAAAACAGTAA-TTCTATCAATCAAGGGTACTTTGGTA
1 TATTTCGATAATTTTACAAATCGAGGGTAAAACAGTAATTTC-ATAAATCAAGGGTACTTTGGTA
* *
22720022 ATTTTACAAGTC-GAGGG
65 ATTTCACAAATCAG-GGG
* ** *** * *
22720039 TATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCATAAATCAGGGGTATTTTGGTAA
1 TATTTCGATAATTTTACAAATCGAGGGTAAAACAGTAATTTCATAAATCAAGGGTACTTTGGTAA
22720104 TTTCACAAATCAGGGG
66 TTTCACAAATCAGGGG
* *
22720120 TATTTTGGTAATTTTACAAA
1 TATTTCGATAATTTTACAAA
22720140 CTAGGGGTAT
Statistics
Matches: 82, Mismatches: 17, Indels: 4
0.80 0.17 0.04
Matches are distributed among these distances:
81 78 0.95
82 4 0.05
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.37
Consensus pattern (81 bp):
TATTTCGATAATTTTACAAATCGAGGGTAAAACAGTAATTTCATAAATCAAGGGTACTTTGGTAA
TTTCACAAATCAGGGG
Found at i:22720356 original size:27 final size:27
Alignment explanation
Indices: 22720063--22720349 Score: 331
Period size: 27 Copynumber: 10.6 Consensus size: 27
22720053 TACAGGTCGA
** * * *
22720063 GGGTATTTCAGTAATTTCATAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
22720090 GGGTATTTTGGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
22720117 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
** *
22720144 GGGTATTTTCATAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
22720171 GGGTATTTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
22720198 AGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* ** *
22720225 GAGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
*
22720252 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
22720279 GGGTATTTTGGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
22720306 GGGTATTTTAGTGATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
*
22720333 GGGCATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
22720350 GGTAAACTAA
Statistics
Matches: 221, Mismatches: 39, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 221 1.00
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:22720356 original size:54 final size:54
Alignment explanation
Indices: 22720009--22720349 Score: 371
Period size: 54 Copynumber: 6.3 Consensus size: 54
22719999 TATCAATCAA
* * ** * * * ***
22720009 GGGTACTTTGGTAATTTTACAAGTCGAGGGTATTTCAATAATTTTACAGGTC-G
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
** * * * * * *
22720062 AGGGTATTTCAGTAATTTCATAAATCAGGGGTATTTTGGTAATTTCACAAATCAG
1 -GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * * *
22720117 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTCA-TAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTT-AGTAATTTTACAAACCAG
* *
22720171 GGGTATTTTGGTAATTTTATAAACAAAAGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* * * *
22720225 GAGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
* *
22720279 GGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTGATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
*
22720333 GGGCATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
22720350 GGTAAACTAA
Statistics
Matches: 241, Mismatches: 43, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
53 1 0.00
54 239 0.99
55 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
GGGTATTTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG
Found at i:22720358 original size:81 final size:81
Alignment explanation
Indices: 22720009--22720349 Score: 339
Period size: 81 Copynumber: 4.2 Consensus size: 81
22719999 TATCAATCAA
* * * *** *** * *
22720009 GGGTACTTTGGTAATTTTAC-AAGTCGAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCA
1 GGGTATTTTGGTAATTTTACAAACTAG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTA
* * *
22720073 GTAATTTCATAAATCAG
65 GTAATTTTACAAACCAG
* * *
22720090 GGGTATTTTGGTAATTTCACAAA-TCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTC
1 GGGTATTTTGGTAATTTTACAAACT-AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTT-
*
22720154 A-TAATTTTACAAACTAG
64 AGTAATTTTACAAACCAG
* * ** * *
22720171 GGGTATTTTGGTAATTTTATAAACAAAAGGTATTTTAGTAATTTTACAAACC-AGGAGTATTTTG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGG-GTATTTTA
** *
22720235 GTAATTTTGTAAACCAA
65 GTAATTTTACAAACCAG
* *
22720252 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAG
1 GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG
*
22720317 TGATTTTACAAACCAG
66 TAATTTTACAAACCAG
*
22720333 GGGCATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
22720350 GGTAAACTAA
Statistics
Matches: 210, Mismatches: 43, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
80 2 0.01
81 201 0.96
82 7 0.03
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTAG
TAATTTTACAAACCAG
Found at i:22722355 original size:31 final size:31
Alignment explanation
Indices: 22722312--22722454 Score: 148
Period size: 31 Copynumber: 4.5 Consensus size: 31
22722302 TATCAGAACT
* *
22722312 AGAATCAAAATCAAAATCAGAATTAGGTGAC
1 AGAATCAAAATCAGAATCAGAATTAGGTAAC
*
22722343 AGAATCAGAATCAGAAT-A-AATATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAAT-T-AGGTAAC
* *
22722374 AGAATCAAAATCAGAATCAGTATCAGGTAAC
1 AGAATCAAAATCAGAATCAGAATTAGGTAAC
* * *
22722405 AGAATAAAAAATCAGAAAT-AGTATCAGGTAAC
1 AGAAT-CAAAATCAG-AATCAGAATTAGGTAAC
22722437 AGAATCAAAAATCAGAAT
1 AGAATC-AAAATCAGAAT
22722455 GTGAATGCAA
Statistics
Matches: 97, Mismatches: 8, Indels: 14
0.82 0.07 0.12
Matches are distributed among these distances:
29 3 0.03
30 2 0.02
31 52 0.54
32 35 0.36
33 5 0.05
ACGTcount: A:0.53, C:0.13, G:0.15, T:0.19
Consensus pattern (31 bp):
AGAATCAAAATCAGAATCAGAATTAGGTAAC
Found at i:22722633 original size:27 final size:26
Alignment explanation
Indices: 22722594--22722692 Score: 117
Period size: 27 Copynumber: 3.7 Consensus size: 26
22722584 CAGTTATCAA
* *
22722594 ATATTGTGACAGAGTCACCAGATACAG
1 ATATTGTGGCAGAGCCACCAGA-ACAG
22722621 ATATTGTGGCAGAGCCACCAGAACAG
1 ATATTGTGGCAGAGCCACCAGAACAG
*
22722647 ATATTTGTGGCATAGCCACCAGAAACAG
1 ATA-TTGTGGCAGAGCCACCAG-AACAG
* * *
22722675 GTAATGTGGCAAAGCCAC
1 ATATTGTGGCAGAGCCAC
22722693 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
26 7 0.11
27 50 0.78
28 7 0.11
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.19
Consensus pattern (26 bp):
ATATTGTGGCAGAGCCACCAGAACAG
Found at i:22723372 original size:27 final size:27
Alignment explanation
Indices: 22723333--22723770 Score: 599
Period size: 27 Copynumber: 16.3 Consensus size: 27
22723323 TACTCCAAAA
* * *
22723333 GGTATCTTGGTAATGCCACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
*
22723360 GGTATTTTAGTAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
*
22723387 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
* *
22723414 GGTATTTCGGTAGTTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
* *
22723441 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
* * *
22723468 GGTATTTCGATAATTCTACCCGACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
* *
22723495 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
*
22723522 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
*
22723549 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
* *
22723576 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
**
22723603 GGTATTCCGGTAATTCTA-CCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
**
22723629 GGTATTCCGGTAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
* *
22723656 GGTATTCTGGTAATTCTACCCTATAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
* *
22723683 GGTATTTCGATAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
*
22723710 GGTATTTCGGTAATTCTACCCTACAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
* * *
22723737 GGTATTTAGGTAACTCTACCCTATAGG
1 GGTATTTTGGTAATTCTACCCTACAGG
22723764 GGTATTT
1 GGTATTT
22723771 CGATAATTTT
Statistics
Matches: 385, Mismatches: 25, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
26 26 0.07
27 359 0.93
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (27 bp):
GGTATTTTGGTAATTCTACCCTACAGG
Found at i:22723793 original size:27 final size:27
Alignment explanation
Indices: 22723763--22724055 Score: 173
Period size: 27 Copynumber: 10.9 Consensus size: 27
22723753 TACCCTATAG
**
22723763 GGGTATTTCGATAATTTTGTAAATCAA
1 GGGTATTTCGATAATTTTACAAATCAA
*** * * **
22723790 GGGTAAAACGGTAATTCTGTAAATCAA
1 GGGTATTTCGATAATTTTACAAATCAA
* * *
22723817 GGGTACTTT-GGTAATTTTACAAGTCGA
1 GGGTA-TTTCGATAATTTTACAAATCAA
* ** **
22723844 GGGTATTTCAATAATTTTACAGGTTGA
1 GGGTATTTCGATAATTTTACAAATCAA
* *
22723871 GGGTATTTC-AGTAATTTCACAAATCAG
1 GGGTATTTCGA-TAATTTTACAAATCAA
* * * *
22723898 GGGTATTTTGATAATTTCACAAATTAG
1 GGGTATTTCGATAATTTTACAAATCAA
* * *
22723925 GGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTCGATAATTTTACAAATCAA
* * *
22723952 GGGTATTTTGGTAATTTTATAAA-CAAA
1 GGGTATTTCGATAATTTTACAAATC-AA
* *
22723979 GGGTATTT-TAGTAATTTTACAAA-CTAG
1 GGGTATTTCGA-TAATTTTACAAATC-AA
* * ** *
22724006 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTCGATAATTTTACAAATCAA
*
22724033 GGGTATTTCGGTAATTTTACAAA
1 GGGTATTTCGATAATTTTACAAA
22724056 CCTGGGGTGT
Statistics
Matches: 214, Mismatches: 44, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
26 5 0.02
27 207 0.97
28 2 0.01
ACGTcount: A:0.33, C:0.09, G:0.20, T:0.38
Consensus pattern (27 bp):
GGGTATTTCGATAATTTTACAAATCAA
Found at i:22723807 original size:81 final size:81
Alignment explanation
Indices: 22723333--22723778 Score: 693
Period size: 81 Copynumber: 5.5 Consensus size: 81
22723323 TACTCCAAAA
* * *
22723333 GGTATCTT-GGTAATGCCACCCTACAGGGGTATTT-TAGTAATTCTACCCTACAGGGGTATTTCG
1 GGTAT-TTCGGTAATTCTACCCTACAGGGGTATTTCGA-TAATTCTACCCTACAGGGGTATTTCG
22723396 GTAATTCTACCCTACAGG
64 GTAATTCTACCCTACAGG
* *
22723414 GGTATTTCGGTAGTTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGAT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGT
*
22723479 AATTCTACCCGACAGG
66 AATTCTACCCTACAGG
* *
22723495 GGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGT
22723560 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
* * * *
22723576 GGTATTTCGATAATTCTACCCTACAGGGGTATTCCGGTAATTCTA-CCTACAGGGGTATTCCGGT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGT
22723640 AATTCTACCCTACAGG
66 AATTCTACCCTACAGG
*
22723656 GGTA-TTCTGGTAATTCTACCCTATAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGG
1 GGTATTTC-GGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGG
22723720 TAATTCTACCCTACAGG
65 TAATTCTACCCTACAGG
* * *
22723737 GGTATTTAGGTAACTCTACCCTATAGGGGTATTTCGATAATT
1 GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATT
22723779 TTGTAAATCA
Statistics
Matches: 340, Mismatches: 20, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
79 3 0.01
80 73 0.21
81 261 0.77
82 3 0.01
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.33
Consensus pattern (81 bp):
GGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTACAGGGGTATTTCGGT
AATTCTACCCTACAGG
Found at i:22723956 original size:81 final size:80
Alignment explanation
Indices: 22723383--22724130 Score: 275
Period size: 81 Copynumber: 9.2 Consensus size: 80
22723373 TTCTACCCTA
* ** * * * * **
22723383 CAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTAGTTCTACCCTAC-AGGGGTATT
1 CAGGGGTATTTCGGTAATTTTA-CAAACAGGGGTATTTTGATAATTTTA-CAAACTAGGGGTATT
* * **
22723447 TCGATAATTCTACCCTA-
64 TTGATAATTTTA-CAAAC
* * ** * * **
22723464 CAGGGGTATTTCGATAATTCTACCCGACAGGGGTATTTCGATAATTCTACCCTAC-AGGGGTATT
1 CAGGGGTATTTCGGTAATTTTA-CAAACAGGGGTATTTTGATAATTTTA-CAAACTAGGGGTATT
* * * **
22723528 TCGGTAATTCTACCCTA-
64 TTGATAATTTTA-CAAAC
* ** * * **
22723545 CAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGATAATTCTACCCTAC-AGGGGTATT
1 CAGGGGTATTTCGGTAATTTTA-CAAACAGGGGTATTTTGATAATTTTA-CAAACTAGGGGTATT
** * * **
22723609 CCGGTAATTCTACCTA-
64 TTGATAATTTTACAAAC
* * ** * * * **
22723625 CAGGGGTATTCCGGTAATTCTACCCTACAGGGGTATTCTGGTAATTCTACCCTA-TAGGGGTATT
1 CAGGGGTATTTCGGTAATTTTA-CAAACAGGGGTATTTTGATAATTTTA-CAAACTAGGGGTATT
* * **
22723689 TCGATAATTCTACCCTA-
64 TTGATAATTTTA-CAAAC
* ** * * * * **
22723706 CAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTAGGTAACTCTACCCTA-TAGGGGTATT
1 CAGGGGTATTTCGGTAATTTTA-CAAACAGGGGTATTTTGATAATTTTA-CAAACTAGGGGTATT
* ** *
22723770 TCGATAATTTTGTAAAT
64 TTGATAATTTTACAAAC
* *** * * * * * *
22723787 CAAGGGTAAAACGGTAATTCTGTA-AATCAAGGGTACTTTGGTAATTTTAC-AAGTCGAGGGTAT
1 CAGGGGTATTTCGGTAATT-T-TACAAACAGGGGTATTTTGATAATTTTACAAACTAG-GGGTAT
** **
22723850 TTCAATAATTTTAC-AGG
63 TTTGATAATTTTACAAAC
** * * * *
22723867 TTGAGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGATAATTTCACAAATTAGGGGTATT
1 CAG-GGGTATTTCGGTAATTTTACAAA-CAGGGGTATTTTGATAATTTTACAAACTAGGGGTATT
22723932 TTGATAATTTTACAAAC
64 TTGATAATTTTACAAAC
* * *
22723949 CAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT-AGTAATTTTACAAACTAGGGGTATT
1 CAGGGGTATTTCGGTAATTTTACAAAC-AGGGGTATTTTGA-TAATTTTACAAACTAGGGGTATT
* **
22724013 TTGGTAATTTTGTAAAC
64 TTGATAATTTTACAAAC
* * * * * * * *
22724030 CAAGGGTATTTCGGTAATTTTACAAACCTGGGGTGTTTTGGTGATTTTATAAACCAAGGGTATTT
1 CAGGGGTATTTCGGTAATTTTACAAA-CAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTT
*
22724095 T-AGTGATTTTACAAAC
65 TGA-TAATTTTACAAAC
*
22724111 CAGGGGCAATTT-GGTAATTT
1 CAGGGG-TATTTCGGTAATTT
22724131 GGTAAACTAA
Statistics
Matches: 558, Mismatches: 91, Indels: 36
0.81 0.13 0.05
Matches are distributed among these distances:
79 2 0.00
80 83 0.15
81 460 0.82
82 11 0.02
83 2 0.00
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.35
Consensus pattern (80 bp):
CAGGGGTATTTCGGTAATTTTACAAACAGGGGTATTTTGATAATTTTACAAACTAGGGGTATTTT
GATAATTTTACAAAC
Found at i:22724056 original size:27 final size:27
Alignment explanation
Indices: 22723814--22724130 Score: 256
Period size: 27 Copynumber: 11.7 Consensus size: 27
22723804 TTCTGTAAAT
* **
22723814 CAAGGGTACTTTGGTAATTTTACAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *** ***
22723841 CGAGGGTATTTCAATAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAC
** ** * *
22723868 TGAGGGTATTTCAGTAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * * *
22723895 CAGGGGTATTTTGATAATTTCACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
22723922 TAGGGGTATTTTGATAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
22723949 CAGGGGTATTTTGGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
22723976 AAAGGGTATTTTAGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * **
22724003 TAGGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
*
22724030 CAAGGGTATTTCGGTAATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
** * * *
22724057 CTGGGGTGTTTTGGTGATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* *
22724084 CAAGGGTATTTTAGTGATTTTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAC
* * *
22724111 CAGGGGCAATTTGGTAATTT
1 CAAGGGTATTTTGGTAATTT
22724131 GGTAAACTAA
Statistics
Matches: 237, Mismatches: 53, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 237 1.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAC
Found at i:22724137 original size:54 final size:54
Alignment explanation
Indices: 22723870--22724130 Score: 326
Period size: 54 Copynumber: 4.8 Consensus size: 54
22723860 TTACAGGTTG
* * * * * * **
22723870 AGGGTATTTCAGTAATTTCACAAATCAGGGGTATTTTGATAATTTCACAAATTA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* *
22723924 GGGGTATTTT-GATAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACAA
1 AGGGTATTTTAG-TAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* *
22723978 AGGGTATTTTAGTAATTTTACAAACTAGGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
** * * *
22724032 AGGGTATTTCGGTAATTTTACAAACCTGGGGTGTTTTGGTGATTTTATAAACCA
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
* * *
22724086 AGGGTATTTTAGTGATTTTACAAACCAGGGGCAATTTGGTAATTT
1 AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTT
22724131 GGTAAACTAA
Statistics
Matches: 177, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
53 1 0.01
54 175 0.99
55 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (54 bp):
AGGGTATTTTAGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATAAACCA
Found at i:22726418 original size:46 final size:46
Alignment explanation
Indices: 22726351--22726572 Score: 295
Period size: 46 Copynumber: 4.8 Consensus size: 46
22726341 ATGTAACCCG
22726351 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCA
22726397 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCA
* * *
22726443 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAG-T
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTTCGCA
* *** * * * *
22726489 TACATCTCTCGAACTCGGGCTCAACTCAACGAGTTCGGACATTCGCA
1 TCCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCA
*
22726536 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG
22726573 ATGCCCAAAC
Statistics
Matches: 153, Mismatches: 18, Indels: 10
0.85 0.10 0.06
Matches are distributed among these distances:
45 1 0.01
46 117 0.76
47 33 0.22
48 2 0.01
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCTTTCGCA
Found at i:22726544 original size:93 final size:93
Alignment explanation
Indices: 22726351--22726577 Score: 307
Period size: 93 Copynumber: 2.5 Consensus size: 93
22726341 ATGTAACCCG
* * * *
22726351 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--GCTTTCGCATCCATAAGTGAACTCGG
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC-CTAGCATACATAACTGAACTCGG
* *
22726414 ACTCAACTCAACGAGCTCGGGCTTTCGCA
65 ACTCAACTCAACGAGCTCGGACATTCGCA
* **
22726443 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAG-TTACATCTCTCGAACTCGG
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGCATACATAACT-GAACTCGG
* *
22726507 GCTCAACTCAACGAGTTCGGACATTCGCA
65 ACTCAACTCAACGAGCTCGGACATTCGCA
*
22726536 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
22726578 CAAACATCCT
Statistics
Matches: 120, Mismatches: 12, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
92 42 0.35
93 76 0.63
94 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGCATACATAACTGAACTCGGA
CTCAACTCAACGAGCTCGGACATTCGCA
Found at i:22732211 original size:43 final size:43
Alignment explanation
Indices: 22732137--22732266 Score: 160
Period size: 43 Copynumber: 3.0 Consensus size: 43
22732127 ATAGGATTTC
*
22732137 TGATATGTGTTCTTGTG-AAGACCACGTCTGGGACGTTGGCAT
1 TGATATGTGTTCTCGTGTAAGACCACGTCTGGGACGTTGGCAT
22732179 TGATATGTGTTCTCGTGTAAGACC-CTGTCTGGGACAG-TGGCAT
1 TGATATGTGTTCTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCAT
* * * *
22732222 CGATATGTGATT-ACATGTAAGACCACATCTGGGACGTTGGCAT
1 TGATATGTG-TTCTCGTGTAAGACCACGTCTGGGACGTTGGCAT
22732265 TG
1 TG
22732267 TACGATATGT
Statistics
Matches: 76, Mismatches: 6, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
42 18 0.24
43 54 0.71
44 4 0.05
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.32
Consensus pattern (43 bp):
TGATATGTGTTCTCGTGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:22735379 original size:43 final size:43
Alignment explanation
Indices: 22735258--22735414 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 43
22735248 TGTGTTTTCA
* *
22735258 TGTAAGACCACGTCTGGGAC-GTTGGCATCGATCTGTGATTTATG
1 TGTAAGACCACGTCTGGGACAG-TGGCATCGATATTTGATTT-TG
* * *
22735302 TGTAAGACCATGTCTGGGACATTGGCATC-TTATTTGATTTTG
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTTTG
** * ***
22735344 TGTAAGACCTTGTCTGGGACAGTGGCGTCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTTTG
22735387 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCACGTCTGGGACAG-TGGCAT
22735415 TGTACGAGCT
Statistics
Matches: 95, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 29 0.31
43 40 0.42
44 26 0.27
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.33
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATTTTG
Found at i:22743206 original size:40 final size:41
Alignment explanation
Indices: 22743146--22743239 Score: 122
Period size: 40 Copynumber: 2.3 Consensus size: 41
22743136 TTTGGTATCA
* * *
22743146 CACACTTAGTG-CTTTATATAGCCGATGCTAT-TCCAACTCG
1 CACACTTAGTGCCATTATATAGCCGAAGCTATATCAAAC-CG
*
22743186 CACACTTAGTGCCATT-TATAGCCGAAGCTATATTAAACCG
1 CACACTTAGTGCCATTATATAGCCGAAGCTATATCAAACCG
22743226 CACACTTAGTGCCA
1 CACACTTAGTGCCA
22743240 AACATAGTCG
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
40 41 0.85
41 7 0.15
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.29
Consensus pattern (41 bp):
CACACTTAGTGCCATTATATAGCCGAAGCTATATCAAACCG
Found at i:22750656 original size:40 final size:40
Alignment explanation
Indices: 22750526--22750660 Score: 123
Period size: 40 Copynumber: 3.3 Consensus size: 40
22750516 GATTCCACAC
* ** * *
22750526 ACTTAGTGCCATTTCAGTTAGCCGAAGCTAAATTTGTATCGCAC
1 ACTTAGTGCCATTT-A--TAGCCGAAGCTATA-TTAAACCGCAA
**
22750570 ACTTAGTGCC-TTATATAGCCGAAGCTAT-TCCAACTCGCACA
1 ACTTAGTGCCATT-TATAGCCGAAGCTATATTAAAC-CGCA-A
22750611 A-TTAGTGCCATTTATAGCCGAAGCTATATTAAACCGCAA
1 ACTTAGTGCCATTTATAGCCGAAGCTATATTAAACCGCAA
22750650 ACTTAGTGCCA
1 ACTTAGTGCCA
22750661 AGTATAGTTG
Statistics
Matches: 77, Mismatches: 8, Indels: 16
0.76 0.08 0.16
Matches are distributed among these distances:
39 4 0.05
40 40 0.52
41 19 0.25
43 3 0.04
44 11 0.14
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (40 bp):
ACTTAGTGCCATTTATAGCCGAAGCTATATTAAACCGCAA
Found at i:22753767 original size:18 final size:18
Alignment explanation
Indices: 22753728--22753767 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22753718 TCAGAGTAGT
* *
22753728 AGAACCCTGAAATAGAGT
1 AGAACCCTGAAACAGAGG
*
22753746 AGAACCCTGAAACAGGGG
1 AGAACCCTGAAACAGAGG
22753764 AGAA
1 AGAA
22753768 TTTAACTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.17, G:0.28, T:0.10
Consensus pattern (18 bp):
AGAACCCTGAAACAGAGG
Found at i:22764544 original size:24 final size:24
Alignment explanation
Indices: 22764518--22764759 Score: 369
Period size: 24 Copynumber: 10.0 Consensus size: 24
22764508 GAGGAAGTGC
*
22764518 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
22764542 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
22764566 AAAAAAGGGCTTATGCCCCAGTTATC
1 --AAAAGGGCTTATGCCCCAGTTATT
*
22764592 AAAAGGGGTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22764616 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
22764640 AAAAGGGCTTATGCCCCAATTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22764664 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
22764688 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
22764712 AAAAAGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
22764736 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
22764760 ATGATAAAGT
Statistics
Matches: 202, Mismatches: 12, Indels: 7
0.91 0.05 0.03
Matches are distributed among these distances:
24 168 0.83
25 11 0.05
26 23 0.11
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:22772848 original size:20 final size:20
Alignment explanation
Indices: 22772825--22772863 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
22772815 TAAACATGGT
22772825 ATGTATGATACGCACATGAC
1 ATGTATGATACGCACATGAC
*
22772845 ATGTATGATATGCACATGA
1 ATGTATGATACGCACATGA
22772864 TGTATTCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.28
Consensus pattern (20 bp):
ATGTATGATACGCACATGAC
Found at i:22772940 original size:24 final size:24
Alignment explanation
Indices: 22772914--22773083 Score: 234
Period size: 24 Copynumber: 7.0 Consensus size: 24
22772904 AAGGAAGTGC
*
22772914 AAAAGGGCTTATGCCCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
22772938 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
22772962 AAAAAAGGGCTTATGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
**
22772988 AAAAGGGCTTATGCCTTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
22773012 AAAAAGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
* *
22773036 AAAAGGCCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
22773060 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
22773084 ATGATAAAGC
Statistics
Matches: 130, Mismatches: 12, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
24 96 0.74
25 10 0.08
26 24 0.18
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:22772992 original size:50 final size:50
Alignment explanation
Indices: 22772914--22773063 Score: 241
Period size: 50 Copynumber: 3.0 Consensus size: 50
22772904 AAGGAAGTGC
*
22772914 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAA
**
22772964 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCTTAGTTATT-A
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAA
* *
22773013 AAAA-GGCTTATGCCCCAGTTATTAAAAGGCCTTTTGCCCCAGTTATTAA
1 AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAA
22773062 AA
1 AA
22773064 GAGGCTAGGC
Statistics
Matches: 92, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
48 39 0.42
49 8 0.09
50 45 0.49
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (50 bp):
AAAAGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAA
Found at i:22773035 original size:74 final size:72
Alignment explanation
Indices: 22772914--22773083 Score: 234
Period size: 74 Copynumber: 2.3 Consensus size: 72
22772904 AAGGAAGTGC
* *
22772914 AAAAGGGCTTATGCCCCAGTTATCAAAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTATGCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATT--AAAAGGCCTTATGCC
22772979 CCAGTTATT
64 CCAGTTATT
** * *
22772988 AAAAGGGCTTATGCCTTAGTTATTAAAAAGGCTTATGCCCCAGTTATTAAAAGGCCTTTTGCCCC
1 AAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATTAAAAGGCCTTATGCCCC
22773053 AGTTATT
66 AGTTATT
*
22773060 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
22773084 ATGATAAAGC
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
72 32 0.38
73 9 0.11
74 44 0.52
ACGTcount: A:0.31, C:0.21, G:0.20, T:0.29
Consensus pattern (72 bp):
AAAAGGGCTTATGCCCCAGTTATCAAAAAGGCTTATGCCCCAGTTATTAAAAGGCCTTATGCCCC
AGTTATT
Found at i:22779975 original size:30 final size:29
Alignment explanation
Indices: 22779927--22779990 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
22779917 CAAGTAGCCG
22779927 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
22779956 AAGCTAGTTTAAATTGCACACTTAGTGCCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
22779986 AAGCT
1 AAGCT
22779991 TCCGATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:22783304 original size:15 final size:15
Alignment explanation
Indices: 22783284--22783315 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
22783274 TTCTAATGTA
*
22783284 AGCCCTCTTGAGCTT
1 AGCCCTATTGAGCTT
22783299 AGCCCTATTGAGCTT
1 AGCCCTATTGAGCTT
22783314 AG
1 AG
22783316 GTTATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.28, G:0.22, T:0.31
Consensus pattern (15 bp):
AGCCCTATTGAGCTT
Found at i:22792659 original size:35 final size:34
Alignment explanation
Indices: 22792587--22792659 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
22792577 TTCCATGCTA
* * * *
22792587 AATTCAATTTGGCAATGTAGTTATACATACATAC
1 AATTCAATTCGGCAATGTAATAATAAATACATAC
* *
22792621 AATTCAATTCGGCTATGTACATAATAAATACATTC
1 AATTCAATTCGGCAATGTA-ATAATAAATACATAC
22792656 AATT
1 AATT
22792660 TAACATCATT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 17 0.53
35 15 0.47
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.36
Consensus pattern (34 bp):
AATTCAATTCGGCAATGTAATAATAAATACATAC
Found at i:22799314 original size:50 final size:49
Alignment explanation
Indices: 22799201--22799335 Score: 168
Period size: 50 Copynumber: 2.7 Consensus size: 49
22799191 TTATGTGTGG
* * *
22799201 GCCAGTGTAAGACCATGTATGGAACATGGCATCGG--CGTTGTTATGTGA
1 GCCAGTGTAAGACCATGTCTGG-ACATGGCATCGGCACGATGTTATGAGA
22799249 GCCAGTGTAAGACCATGTCTAGGACATGGCATCGGCACCGAT-TTATGAGA
1 GCCAGTGTAAGACCATGTCT-GGACATGGCATCGGCA-CGATGTTATGAGA
* *
22799299 GCTAGTGTAAGACCATGTCCGGGACATGGCATCGGCA
1 GCCAGTGTAAGACCATGT-CTGGACATGGCATCGGCA
22799336 TTTTACCCTT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
48 31 0.40
49 2 0.03
50 40 0.52
51 4 0.05
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (49 bp):
GCCAGTGTAAGACCATGTCTGGACATGGCATCGGCACGATGTTATGAGA
Found at i:22806469 original size:47 final size:47
Alignment explanation
Indices: 22806406--22806564 Score: 255
Period size: 47 Copynumber: 3.4 Consensus size: 47
22806396 CCCTTCGGGA
* * * * *
22806406 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
* *
22806453 CTTATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
22806500 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
22806547 CTTATCACATATACACAC
1 CTTATCACATATACACAC
22806565 CTTGTACACC
Statistics
Matches: 105, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 105 1.00
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATACACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22806509 original size:22 final size:22
Alignment explanation
Indices: 22806481--22806556 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
22806471 TTTCACATTC
22806481 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
*** *** *
22806503 ATCACATATACACACTTTCACATT
1 ATCACATCGGC-CA-TTAGGCCTT
22806527 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
22806550 ATCACAT
1 ATCACAT
22806557 ATACACACCT
Statistics
Matches: 37, Mismatches: 14, Indels: 6
0.65 0.25 0.11
Matches are distributed among these distances:
22 15 0.41
23 7 0.19
24 7 0.19
25 8 0.22
ACGTcount: A:0.29, C:0.32, G:0.11, T:0.29
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:22810275 original size:47 final size:47
Alignment explanation
Indices: 22810206--22810384 Score: 189
Period size: 47 Copynumber: 3.8 Consensus size: 47
22810196 GGTATAATGC
* *
22810206 CGATGCCATGTCCTAGACATGGTCTTACATTGGCTCATCCATCAAGT
1 CGATGCCATATCCTAGACATGGTCTTACACTGGCTCATCCATCAAGT
*
22810253 CGATGCCATATCCTAGACATGGTCTTACACTGGCTCCTCCATCAAGT
1 CGATGCCATATCCTAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * * * * * * *
22810300 TGATGCCATATCCCAAATATGGTCTTACACTGACT-ATCGAAATCGAGGC
1 CGATGCCATATCCTAGACATGGTCTTACACTGGCTCATC--CATC-AAGT
* * * *
22810349 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTC
1 CGATGCCATATCCTAGACATGGTCTTACACTGGCTC
22810385 TCACATGTCC
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
46 2 0.02
47 74 0.68
48 3 0.03
49 30 0.28
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
CGATGCCATATCCTAGACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:22810371 original size:49 final size:50
Alignment explanation
Indices: 22810304--22810432 Score: 138
Period size: 50 Copynumber: 2.6 Consensus size: 50
22810294 TCAAGTTGAT
* * *
22810304 GCCATATCCCAAATATGGTCTTACACTGACTATCGA-A-ATCGAGGCCGAC
1 GCCATGTCCCAAACATGGTCTTACACTGACTATC-ACATATCCAGGCCGAC
* * * * * *
22810353 GCCATGTCCCAGACATGGTCTTACACT-AGCTCTCACATGTCCATGCCTAT
1 GCCATGTCCCAAACATGGTCTTACACTGA-CTATCACATATCCAGGCCGAC
22810403 GCCATGTCCCAAACATGGTCTTACACTGAC
1 GCCATGTCCCAAACATGGTCTTACACTGAC
22810433 ACATCTCATA
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
48 2 0.03
49 29 0.44
50 34 0.52
51 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.17, T:0.25
Consensus pattern (50 bp):
GCCATGTCCCAAACATGGTCTTACACTGACTATCACATATCCAGGCCGAC
Found at i:22810499 original size:46 final size:46
Alignment explanation
Indices: 22810355--22810519 Score: 149
Period size: 46 Copynumber: 3.5 Consensus size: 46
22810345 AGGCCGACGC
* * * * *
22810355 CATGTCCCAGACATGGTCTTACACTAGCTCTCACATGTCCATGCCTATGC
1 CATGTCCCAGACATGGTCTTACACTGGCT-T-ACATCT-CAAGCCAAT-A
* * *
22810405 CATGTCCCAAACATGGTCTTACACTGAC--ACATCTCATAGCCGATA
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCA-AGCCAATA
*
22810450 CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCGAGGCCAATA
1 CATGTCCCAGACATGGTCTTACACTGGCTTACATCTC-AAGCCAATA
* *
22810496 CATGTTCCAGTCAT-GTCTTACACT
1 CATGTCCCAGACATGGTCTTACACT
22810520 AGCACTCGTC
Statistics
Matches: 98, Mismatches: 13, Indels: 12
0.80 0.11 0.10
Matches are distributed among these distances:
44 12 0.12
45 15 0.15
46 45 0.46
47 1 0.01
50 25 0.26
ACGTcount: A:0.25, C:0.32, G:0.15, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGCCAATA
Found at i:22813320 original size:23 final size:23
Alignment explanation
Indices: 22813289--22813346 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
22813279 CTGAGCTGAT
*
22813289 AAACAATAAGCTCTATTAAGCTG
1 AAACAATAAGCTCTATCAAGCTG
*
22813312 AAACGATAAGCTCTATCAAGCTG
1 AAACAATAAGCTCTATCAAGCTG
*
22813335 -AACAGTAAGCTC
1 AAACAATAAGCTC
22813347 ATACGAGCTG
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 10 0.32
23 21 0.68
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.22
Consensus pattern (23 bp):
AAACAATAAGCTCTATCAAGCTG
Found at i:22820208 original size:40 final size:40
Alignment explanation
Indices: 22820159--22820253 Score: 163
Period size: 40 Copynumber: 2.4 Consensus size: 40
22820149 CGGATGTAAC
*
22820159 AACCAGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
22820199 AACCCGCACGAATGCCTTCGGGACTTAACTCGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
22820239 AACCCGCATGAATGC
1 AACCCGCACGAATGC
22820254 TATGCACATA
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 52 1.00
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:22824709 original size:49 final size:49
Alignment explanation
Indices: 22824637--22825745 Score: 1981
Period size: 49 Copynumber: 22.9 Consensus size: 49
22824627 GAAATGATAG
*
22824637 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
* *
22824686 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG--TATATGTGTGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
* *
22824733 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22824782 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22824831 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22824880 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22824929 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22824978 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22825027 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22825076 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22825125 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22825174 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22825223 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22825272 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22825321 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22825370 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
22825419 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
*
22825468 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
* *
22825515 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-A-A
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
* * *
22825562 TAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
* *
22825609 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-A-A
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
* * *
22825656 TAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
*
22825703 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT
1 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATAT
22825746 GTGACGGGGC
Statistics
Matches: 1025, Mismatches: 23, Indels: 24
0.96 0.02 0.02
Matches are distributed among these distances:
45 12 0.01
47 232 0.23
49 781 0.76
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (49 bp):
TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATATGAGA
Found at i:22825975 original size:37 final size:37
Alignment explanation
Indices: 22825919--22825997 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
22825909 CCGAGCTCTA
* *
22825919 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
22825956 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22825993 AAGAC
1 AAGAC
22825998 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22828666 original size:28 final size:27
Alignment explanation
Indices: 22828592--22828666 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 27
22828582 ACACGCTAGA
* *
22828592 AAATGGAAGCTTTTGTGGCAACCTATG
1 AAATGGAAGCCTTTGTGGCGACCTATG
*
22828619 AAATGGAAGCCTTTGTGGCGATCTATGG
1 AAATGGAAGCCTTTGTGGCGACCTAT-G
22828647 AAA-GGAACGCCTTTGTGGCG
1 AAATGGAA-GCCTTTGTGGCG
22828667 CATTCTAGAG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 27 0.63
28 16 0.37
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGCGACCTATG
Found at i:22829363 original size:27 final size:27
Alignment explanation
Indices: 22829256--22829371 Score: 144
Period size: 27 Copynumber: 4.3 Consensus size: 27
22829246 ACACGCCAAA
* * *
22829256 AAATGGAAGTCTTTGTGAAAATCTATA
1 AAATGGAAGCCTTTGTGGAAATCTATG
* *
22829283 AAATTGAAGCCTTTGTAGAAATCTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
* *
22829310 AAATGGAAGCCTTTGTGGCAATTTATG
1 AAATGGAAGCCTTTGTGGAAATCTATG
*
22829337 AAATGGAAGCCTTTGTGGCAATCTATGG
1 AAATGGAAGCCTTTGTGGAAATCTAT-G
22829365 AAA-GGAA
1 AAATGGAA
22829372 CACGTTCATG
Statistics
Matches: 78, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
27 74 0.95
28 4 0.05
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.30
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGAAATCTATG
Found at i:22829493 original size:53 final size:53
Alignment explanation
Indices: 22829427--22829625 Score: 191
Period size: 53 Copynumber: 3.7 Consensus size: 53
22829417 AAAATAGACA
* * ** *
22829427 AATGGTAAATACAGAAAACTCTAAAAGAAGGATATGTATGGCTCACTCTGAAG
1 AATGGTAAGTACAGTAAACTCTAAAAGAAGGATATGTATGGCAAACTCTAAAG
* *
22829480 AATGGTAAGTACAGTAAACTCTAAGAGAATGATATGTATGGCAAACTCTAAAG
1 AATGGTAAGTACAGTAAACTCTAAAAGAAGGATATGTATGGCAAACTCTAAAG
* * ** * * * *
22829533 AATGATAAGTACGGTAAACTCTAAAAGAATTATTTATGTGGCTAACTCTAAAAG
1 AATGGTAAGTACAGTAAACTCTAAAAGAAGGATATGTATGGCAAACTCT-AAAG
* * * * * * *
22829587 ACTAGTAAGAATAGTAAACTCTAAGAGAAAGATGTGTAT
1 AATGGTAAGTACAGTAAACTCTAAAAGAAGGATATGTAT
22829626 AGTGAACTTT
Statistics
Matches: 118, Mismatches: 27, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
53 87 0.74
54 31 0.26
ACGTcount: A:0.44, C:0.11, G:0.20, T:0.26
Consensus pattern (53 bp):
AATGGTAAGTACAGTAAACTCTAAAAGAAGGATATGTATGGCAAACTCTAAAG
Found at i:22829509 original size:27 final size:26
Alignment explanation
Indices: 22829471--22829562 Score: 112
Period size: 27 Copynumber: 3.5 Consensus size: 26
22829461 TGTATGGCTC
* * *
22829471 ACTCTGAAGAATGGTAAGTACAGTAA
1 ACTCTAAAGAATGATAAGTACGGTAA
* * *
22829497 ACTCTAAGAGAATGATATGTATGGCAA
1 ACTCTAA-AGAATGATAAGTACGGTAA
22829524 ACTCTAAAGAATGATAAGTACGGTAA
1 ACTCTAAAGAATGATAAGTACGGTAA
22829550 ACTCTAAAAGAAT
1 ACTCT-AAAGAAT
22829563 TATTTATGTG
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
26 27 0.49
27 28 0.51
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.24
Consensus pattern (26 bp):
ACTCTAAAGAATGATAAGTACGGTAA
Found at i:22831363 original size:54 final size:53
Alignment explanation
Indices: 22831297--22831404 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 53
22831287 CAGATACAAA
*
22831297 TGGGAGAGGGACTTGTCTCCAGAGTTGACAGAGTGTGTATATCCTCATTCTTT
1 TGGGAGAGGGACTTGTCTCCAGAGTTGAAAGAGTGTGTATATCCTCATTCTTT
* *
22831350 TNGGGAGAGGGACTTGTCTCCAGAGTTTAAAGAGTGTGTATATCCTCCTTCTTT
1 T-GGGAGAGGGACTTGTCTCCAGAGTTGAAAGAGTGTGTATATCCTCATTCTTT
22831404 T
1 T
22831405 CAAGAACTAC
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 1 0.02
54 50 0.98
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.35
Consensus pattern (53 bp):
TGGGAGAGGGACTTGTCTCCAGAGTTGAAAGAGTGTGTATATCCTCATTCTTT
Found at i:22834485 original size:27 final size:27
Alignment explanation
Indices: 22834387--22834514 Score: 161
Period size: 27 Copynumber: 4.7 Consensus size: 27
22834377 TTAGTTTACC
22834387 AAATTACCAAAATA-CCCTCGATTAGCA
1 AAATTACCAAAATACCCCT-GATTAGCA
*
22834414 AAATTACCAAAATACCCTTGATTAGCA
1 AAATTACCAAAATACCCCTGATTAGCA
* *
22834441 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCCTGATTAGCA
* * *
22834468 AAATTACCGAAATACCCCTG-TAAGGTA
1 AAATTACCAAAATACCCCTGATTA-GCA
*
22834495 AAATTACCGAAATACCCCTG
1 AAATTACCAAAATACCCCTG
22834515 TAGGGTGGAA
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
26 1 0.01
27 88 0.96
28 3 0.03
ACGTcount: A:0.42, C:0.24, G:0.09, T:0.24
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGATTAGCA
Found at i:22834515 original size:27 final size:27
Alignment explanation
Indices: 22834442--22834835 Score: 450
Period size: 27 Copynumber: 14.6 Consensus size: 27
22834432 TGATTAGCAA
* ** *
22834442 AATTACCAAAATACCCCTG-ATTTGTAA
1 AATTACCGAAATACCCCTGTA-AGGTAG
*
22834469 AATTACCGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
22834496 AATTACCGAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
22834523 AATTACTGAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
22834550 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
** * *
22834577 AATTATTGAAATACTCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
*
22834604 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
22834631 AATGACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
22834658 AATTACCGAAATATCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
22834685 AATTACTGAAATACCCCAGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
22834712 AATTATCGAAATAGCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
**
22834739 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* *
22834766 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAAGGTAG
* * *
22834793 AAATACTGAAATACCCTTGT-AGGATAG
1 AATTACCGAAATACCCCTGTAAGG-TAG
* *
22834820 AATTATCGAGATACCC
1 AATTACCGAAATACCC
22834836 TCGTGGGGTA
Statistics
Matches: 314, Mismatches: 51, Indels: 4
0.85 0.14 0.01
Matches are distributed among these distances:
26 2 0.01
27 311 0.99
28 1 0.00
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAAGGTAG
Found at i:22834527 original size:54 final size:54
Alignment explanation
Indices: 22834442--22834852 Score: 549
Period size: 54 Copynumber: 7.6 Consensus size: 54
22834432 TGATTAGCAA
* ** * * *
22834442 AATTACCAAAATACCCCTG-ATTTGTAAAATTACCGAAATACCCCTGTAAGGTAA
1 AATTACCGAAATACCCCTGTA-GGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* *
22834496 AATTACCGAAATACCCCTGTAGGGTGGAATTACTGAAATACTCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * * *
22834550 AATTACTGAAATACCCCTGTAGGGTAGAATTATTGAAATACTCCTGTATGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
*
22834604 AATTACCGAAATACCCCTGTAGGGTAGAATGACTGAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* *
22834658 AATTACCGAAATATCCCTGTAGGGTAGAATTACTGAAATACCCCAGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * *
22834712 AATTATCGAAATAGCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
* * *
22834766 AATTACCGAAATACCCTTGTAGGGTAGAAATACTGAAATACCCTTGT-AGGATAG
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGG-TAG
* * * *
22834820 AATTATCGAGATA-CCCTCGTGGGGTAAAATTAC
1 AATTACCGAAATACCCCT-GTAGGGTAGAATTAC
22834853 CATTTTGCCC
Statistics
Matches: 318, Mismatches: 36, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
53 6 0.02
54 311 0.98
55 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (54 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAG
Found at i:22835216 original size:22 final size:22
Alignment explanation
Indices: 22835188--22835239 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
22835178 TCGAATGCTC
*
22835188 TGTGCCAACCTAAATATGGCTT
1 TGTGCCAACATAAATATGGCTT
* * *
22835210 TGTGCCATCATGACTATGGCTT
1 TGTGCCAACATAAATATGGCTT
*
22835232 CGTGCCAA
1 TGTGCCAA
22835240 ACGTATTTAC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.21, T:0.31
Consensus pattern (22 bp):
TGTGCCAACATAAATATGGCTT
Found at i:22835453 original size:28 final size:28
Alignment explanation
Indices: 22835396--22835531 Score: 115
Period size: 27 Copynumber: 5.0 Consensus size: 28
22835386 ATCCTGTTAA
* *
22835396 GTGGCTTTGCCACATTA-TCTGATTT-TG
1 GTGGCTCTGCCACAATATTCTG-TTTCTG
* *
22835423 GTGGCCCTGTCACAATATTCTGTTTCTG
1 GTGGCTCTGCCACAATATTCTGTTTCTG
* *
22835451 GTGGCTATGCCACAA-ATATCTG-TTCTA
1 GTGGCTCTGCCACAATAT-TCTGTTTCTG
* *
22835478 GTGGCTCTGCCACAATA-CCTGTATCTG
1 GTGGCTCTGCCACAATATTCTGTTTCTG
* *
22835505 GTGACTCTGTCACAATATT-TG-TTCTG
1 GTGGCTCTGCCACAATATTCTGTTTCTG
22835531 G
1 G
22835532 CAGCCATGCT
Statistics
Matches: 87, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
26 8 0.09
27 56 0.64
28 23 0.26
ACGTcount: A:0.18, C:0.23, G:0.21, T:0.38
Consensus pattern (28 bp):
GTGGCTCTGCCACAATATTCTGTTTCTG
Found at i:22835482 original size:55 final size:53
Alignment explanation
Indices: 22835396--22835529 Score: 133
Period size: 55 Copynumber: 2.5 Consensus size: 53
22835386 ATCCTGTTAA
* * * * * * *
22835396 GTGGCTTTGCCACATTATCTGATTTTGGTGGCCCTGTCACAATATTCTGTTTCTG
1 GTGGCTATGCCACAATATCTG-TTCTAGTGGCCCTGCCACAATA-CCTGTATCTG
*
22835451 GTGGCTATGCCACAAATATCTGTTCTAGTGGCTCTGCCACAATACCTGTATCTG
1 GTGGCTATGCCAC-AATATCTGTTCTAGTGGCCCTGCCACAATACCTGTATCTG
* * * *
22835505 GTGACTCTGTCACAATATTTGTTCT
1 GTGGCTATGCCACAATATCTGTTCT
22835530 GGCAGCCATG
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
53 11 0.17
54 18 0.27
55 30 0.45
56 7 0.11
ACGTcount: A:0.19, C:0.23, G:0.20, T:0.38
Consensus pattern (53 bp):
GTGGCTATGCCACAATATCTGTTCTAGTGGCCCTGCCACAATACCTGTATCTG
Found at i:22835658 original size:6 final size:6
Alignment explanation
Indices: 22835649--22835754 Score: 83
Period size: 6 Copynumber: 17.3 Consensus size: 6
22835639 TTGCATTCAC
* *
22835649 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTTTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * * *
22835698 ATTATG ATTCTG -TCACATG ATTCTG ATTCTA ATTCTC ATTTTG ATTCTTG
1 ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG ATTCTG ATTC-TG
22835748 -TTCTG AT
1 ATTCTG AT
22835755 AATGTTGCTT
Statistics
Matches: 80, Mismatches: 12, Indels: 16
0.74 0.11 0.15
Matches are distributed among these distances:
5 5 0.06
6 65 0.81
7 8 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.16, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:22835752 original size:43 final size:43
Alignment explanation
Indices: 22835643--22835745 Score: 134
Period size: 43 Copynumber: 2.4 Consensus size: 43
22835633 TTGGGATTGC
* * * * *
22835643 ATTCACATTCTGATTCTGATTCTGTTACCTGATACTGATTCTG
1 ATTCTCATTTTGATTCTGATTCTGTCACATGATACTGATTCTA
* * *
22835686 ATTCTGATTTTGATTATGATTCTGTCACATGATTCTGATTCTA
1 ATTCTCATTTTGATTCTGATTCTGTCACATGATACTGATTCTA
22835729 ATTCTCATTTTGATTCT
1 ATTCTCATTTTGATTCT
22835746 TGTTCTGATA
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 50 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (43 bp):
ATTCTCATTTTGATTCTGATTCTGTCACATGATACTGATTCTA
Found at i:22847162 original size:43 final size:42
Alignment explanation
Indices: 22847109--22847259 Score: 171
Period size: 43 Copynumber: 3.5 Consensus size: 42
22847099 TATCCCAAGT
*
22847109 ATGGTCTTACATGTTATCTCATATCGATGCCAATGTCTCAGAC
1 ATGGTCTTACATGTAATCTCATATCGATGCCAATGTC-CAGAC
* * * * *
22847152 ATGGCCTTACACGAAATCAT-ATAACGATGCCAATGTCCTAGAT
1 ATGGTCTTACATGTAATC-TCATATCGATGCCAATGTCC-AGAC
* *
22847195 ATGGTCTTACATGTAATCACA-ATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACATGTAATCTCATAT-CGATGCCAATGT-CCAGAC
22847238 ATGGTCTTACATGTAATCTCAT
1 ATGGTCTTACATGTAATCTCAT
22847260 CTCGGTAATC
Statistics
Matches: 88, Mismatches: 14, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
42 2 0.02
43 83 0.94
44 3 0.03
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (42 bp):
ATGGTCTTACATGTAATCTCATATCGATGCCAATGTCCAGAC
Found at i:22848793 original size:35 final size:35
Alignment explanation
Indices: 22848728--22848794 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
22848718 GATGACACCT
**
22848728 TGTAAACGATATATAGGTCCTTCAGTGCAACACTG
1 TGTAAACGATATATAGGTCCTTCAAAGCAACACTG
* * *
22848763 TGTAAATGGTATATATGTCCTTCAAAGCAACA
1 TGTAAACGATATATAGGTCCTTCAAAGCAACA
22848795 TCTCAAACGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (35 bp):
TGTAAACGATATATAGGTCCTTCAAAGCAACACTG
Found at i:22851528 original size:39 final size:40
Alignment explanation
Indices: 22851485--22851602 Score: 150
Period size: 40 Copynumber: 3.0 Consensus size: 40
22851475 TTATTGCCTG
22851485 AATGCACATACGTGCCCCTGTTTGTACT-TCGGT-CCCCTA
1 AATGCACATACGTGCCCCTGTTTGTACTCT-GGTACCCCTA
22851524 AATGCACATACGTGCCCCTGTTTGTACTCTGGTACCCCTA
1 AATGCACATACGTGCCCCTGTTTGTACTCTGGTACCCCTA
* * * * * * *
22851564 AATGTACATACATGCCTCTATTTATACTTTGGTAACCCT
1 AATGCACATACGTGCCCCTGTTTGTACTCTGGTACCCCT
22851603 GATATACTTT
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
39 31 0.44
40 39 0.56
ACGTcount: A:0.22, C:0.30, G:0.15, T:0.33
Consensus pattern (40 bp):
AATGCACATACGTGCCCCTGTTTGTACTCTGGTACCCCTA
Found at i:22851610 original size:19 final size:19
Alignment explanation
Indices: 22851586--22851623 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
22851576 TGCCTCTATT
22851586 TATACTTTGGTAACCCTGA
1 TATACTTTGGTAACCCTGA
22851605 TATACTTTGGTAACCCTGA
1 TATACTTTGGTAACCCTGA
22851624 ATCAAATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (19 bp):
TATACTTTGGTAACCCTGA
Found at i:22869748 original size:100 final size:100
Alignment explanation
Indices: 22869572--22869958 Score: 476
Period size: 100 Copynumber: 3.9 Consensus size: 100
22869562 GTCGAAGCTG
* * * *
22869572 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCTGGTACACGTAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATTATCGGGTACACATAG
* *
22869635 TAGCCTGCACTTAGTACTACACACGTGATCACAGTTT
66 TAGCCTGCACTTAGTACTACACACGTGA-C-CAATTA
* * * * *
22869672 TCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCTGGTACACGTAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATTATCGGGTACACATAG
* **
22869735 TAGCCTACACTTAGTACTACACACGTGACCTAACCA
66 TAGCCTGCACTTAGTACTACACACGTGACC-AATTA
* * * * * *
22869771 TCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATTATCGGGTACACATAG
* *
22869836 TAGCCTGCACTTAGTACTACACATGCGACCAATTA
66 TAGCCTGCACTTAGTACTACACACGTGACCAATTA
* * * * *
22869871 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATTATCGGGTACACATAG
22869936 TAGCCTGCACTTAGTACTACACA
66 TAGCCTGCACTTAGTACTACACA
22869959 TGCGACCTCA
Statistics
Matches: 261, Mismatches: 23, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
98 1 0.00
99 38 0.15
100 180 0.69
101 42 0.16
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (100 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGATCACAATTATCGGGTACACATAG
TAGCCTGCACTTAGTACTACACACGTGACCAATTA
Found at i:22869842 original size:150 final size:149
Alignment explanation
Indices: 22869572--22869958 Score: 603
Period size: 150 Copynumber: 2.6 Consensus size: 149
22869562 GTCGAAGCTG
* * * * ** *
22869572 TCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCTGGTACACGTAGTA
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCTGATACACGTAGTA
22869637 GCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTA
66 GCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTA
22869702 CTACACATGCGACCAATTA
131 CTACACATGCGACCAATTA
*
22869721 TCTGGTACACGTAGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTGATACACGTAGT
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACC-AACCATCTGATACACGTAGT
22869786 AGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGT
65 AGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGT
22869851 ACTACACATGCGACCAATTA
130 ACTACACATGCGACCAATTA
**** * * * *
22869871 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAG
1 TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGA-C-CAACCATCTGATACACGTAG
22869936 TAGCCTGCACTTAGTACTACACA
64 TAGCCTGCACTTAGTACTACACA
22869959 TGCGACCTCA
Statistics
Matches: 218, Mismatches: 17, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
149 39 0.18
150 143 0.66
151 35 0.16
152 1 0.00
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (149 bp):
TCTGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAACCATCTGATACACGTAGTA
GCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCATAGTAGCCTGCACTTAGTA
CTACACATGCGACCAATTA
Found at i:22884240 original size:30 final size:29
Alignment explanation
Indices: 22884197--22884260 Score: 101
Period size: 30 Copynumber: 2.2 Consensus size: 29
22884187 CAAGTAGCCG
*
22884197 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCACACACTTAGTGCCA
*
22884226 AAGCTAGTTTAAATCACACAGTTAGTGCCA
1 AAGCTAG-TTAAATCACACACTTAGTGCCA
22884256 AAGCT
1 AAGCT
22884261 TCTGATTCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 7 0.22
30 25 0.78
ACGTcount: A:0.36, C:0.22, G:0.17, T:0.25
Consensus pattern (29 bp):
AAGCTAGTTAAATCACACACTTAGTGCCA
Found at i:22890300 original size:27 final size:27
Alignment explanation
Indices: 22890269--22890321 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
22890259 ACTCCCTAAT
*
22890269 TGATAAAATGACTGTTATGCCCCTATG
1 TGATAAAATAACTGTTATGCCCCTATG
22890296 TGATAAAATAACTGTTATGCCCCTAT
1 TGATAAAATAACTGTTATGCCCCTAT
22890322 ATGAGGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (27 bp):
TGATAAAATAACTGTTATGCCCCTATG
Found at i:22892628 original size:29 final size:29
Alignment explanation
Indices: 22892594--22892659 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
22892584 ATCAACCGCG
22892594 CACACTTAGTGCCATGCACTTT-AAGCTCA
1 CACACTTAGTGCCATGCA-TTTCAAGCTCA
* *
22892623 CACACTTAGTGCCATGCATTTCAAGTTCG
1 CACACTTAGTGCCATGCATTTCAAGCTCA
22892652 CACACTTA
1 CACACTTA
22892660 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
CACACTTAGTGCCATGCATTTCAAGCTCA
Found at i:22892772 original size:174 final size:174
Alignment explanation
Indices: 22892481--22892808 Score: 593
Period size: 174 Copynumber: 1.9 Consensus size: 174
22892471 AACTCAAGGT
* *
22892481 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
22892546 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
22892611 ACTTTAAGCTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
*
22892655 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAGGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
22892720 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
*
22892785 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
22892809 TGTACAATTT
Statistics
Matches: 147, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 147 1.00
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:22892800 original size:29 final size:30
Alignment explanation
Indices: 22892761--22892839 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
22892751 CTTAATAATC
22892761 AACCACGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
22892791 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
22892820 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
22892840 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:22895931 original size:26 final size:26
Alignment explanation
Indices: 22895902--22895961 Score: 75
Period size: 28 Copynumber: 2.2 Consensus size: 26
22895892 TCCCTTTGAA
* * *
22895902 TCATTCGATATTTTGCACACTAAGTG
1 TCATTCAATATCTCGCACACTAAGTG
22895928 TCATTCTCAATATCTCGCACACTAAGTG
1 TCA-T-TCAATATCTCGCACACTAAGTG
22895956 TCATTC
1 TCATTC
22895962 TCAATATTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 5 0.17
27 2 0.07
28 22 0.76
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.37
Consensus pattern (26 bp):
TCATTCAATATCTCGCACACTAAGTG
Found at i:22895947 original size:28 final size:28
Alignment explanation
Indices: 22895916--22895983 Score: 109
Period size: 28 Copynumber: 2.4 Consensus size: 28
22895906 TCGATATTTT
22895916 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGTCATTCTCAATATCTC
*
22895944 GCACACTAAGTGTCATTCTCAATATTTC
1 GCACACTAAGTGTCATTCTCAATATCTC
* *
22895972 GTACACTGAGTG
1 GCACACTAAGTG
22895984 CCATATTTGA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGTCATTCTCAATATCTC
Found at i:22898026 original size:22 final size:22
Alignment explanation
Indices: 22897944--22898041 Score: 67
Period size: 22 Copynumber: 4.5 Consensus size: 22
22897934 TGCCCTTAAA
*
22897944 CAGAATGGCCA-AGAGCCATAAA
1 CAGAATGG-CATAGAGCCATAAT
* * *
22897966 CAAAATGGTTATA-AACCATAAT
1 CAGAATGG-CATAGAGCCATAAT
* * *
22897988 CA-AGATAGCACAAAGCCATAAT
1 CAGA-ATGGCATAGAGCCATAAT
22898010 CAGAATGGCATAGAGCCATAAT
1 CAGAATGGCATAGAGCCATAAT
* *
22898032 TAGGATGGCA
1 CAGAATGGCA
22898042 CAACGCTATT
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
21 3 0.05
22 53 0.91
23 2 0.03
ACGTcount: A:0.45, C:0.18, G:0.19, T:0.17
Consensus pattern (22 bp):
CAGAATGGCATAGAGCCATAAT
Found at i:22898208 original size:22 final size:22
Alignment explanation
Indices: 22898180--22898243 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
22898170 TAAATATGAT
22898180 TGGCACAAAGCCATAATCAGGA
1 TGGCACAAAGCCATAATCAGGA
* ** * *
22898202 TGGCACAGAGCCATTTTTAGGT
1 TGGCACAAAGCCATAATCAGGA
*
22898224 TGGCAAAAAGCCATAATCAG
1 TGGCACAAAGCCATAATCAG
22898244 ATTACACAGC
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (22 bp):
TGGCACAAAGCCATAATCAGGA
Found at i:22898637 original size:27 final size:26
Alignment explanation
Indices: 22898606--22898692 Score: 129
Period size: 27 Copynumber: 3.2 Consensus size: 26
22898596 TTCCCTCCAG
*
22898606 GGGTATTTCAGTAATTTTATACTACAA
1 GGGTATTTC-GTAATTTTACACTACAA
22898633 GGGTATTTCGGTAATTTTACACTACAA
1 GGGTATTTC-GTAATTTTACACTACAA
*
22898660 GGGTATTTCGATAATTGTACACTACAA
1 GGGTATTTCG-TAATTTTACACTACAA
22898687 GGGTAT
1 GGGTAT
22898693 ATTTTTACAA
Statistics
Matches: 56, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
26 1 0.02
27 55 0.98
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.37
Consensus pattern (26 bp):
GGGTATTTCGTAATTTTACACTACAA
Found at i:22901497 original size:22 final size:22
Alignment explanation
Indices: 22901431--22901498 Score: 68
Period size: 22 Copynumber: 3.1 Consensus size: 22
22901421 GTTATAAACC
* *
22901431 ATAATCAAGATGGCACAAAGAC-
1 ATAATCAGGATGGCAC-AAGGCT
* *
22901453 ATAATAAGGATGGCA-GAGAGCT
1 ATAATCAGGATGGCACAAG-GCT
22901475 ATAATCAGGATGGCACAAGGCT
1 ATAATCAGGATGGCACAAGGCT
22901497 AT
1 AT
22901499 CGGTAACTGT
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.05
21 1 0.03
22 32 0.86
23 2 0.05
ACGTcount: A:0.43, C:0.15, G:0.25, T:0.18
Consensus pattern (22 bp):
ATAATCAGGATGGCACAAGGCT
Found at i:22901617 original size:22 final size:22
Alignment explanation
Indices: 22901592--22901646 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
22901582 ATTGGCATAA
22901592 AGCCATAATCAAGATGGCACAG
1 AGCCATAATCAAGATGGCACAG
** * *
22901614 AGCCATTTTTAGGATGGCACAG
1 AGCCATAATCAAGATGGCACAG
22901636 AGCCATAATCA
1 AGCCATAATCA
22901647 GATTACGCAG
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (22 bp):
AGCCATAATCAAGATGGCACAG
Found at i:22902018 original size:27 final size:27
Alignment explanation
Indices: 22902000--22902076 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
22901990 TTTGCCCTAC
* *
22902000 AAGGGTATCTCGATAATTTTTCACTAT
1 AAGGGTATTTCGATAATTTTACACTAT
22902027 AAGGGTATTTCGATAATTTTACACTAT
1 AAGGGTATTTCGATAATTTTACACTAT
*
22902054 AAGGGTATTTCGGTAATTTTACA
1 AAGGGTATTTCGATAATTTTACA
22902077 AACTGGGGTA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.40
Consensus pattern (27 bp):
AAGGGTATTTCGATAATTTTACACTAT
Found at i:22902094 original size:26 final size:26
Alignment explanation
Indices: 22902029--22902107 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
22902019 TTCACTATAA
* * *
22902029 GGGTATTTCGATAATTTTACACTA-TAA
1 GGGTATTTCGGTAATTTTACA-AACT-G
22902056 GGGTATTTCGGTAATTTTACAAACTG
1 GGGTATTTCGGTAATTTTACAAACTG
* *
22902082 GGGTATTTGGGTAATTTTATAAACTG
1 GGGTATTTCGGTAATTTTACAAACTG
22902108 AGGTCTTAAT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
26 25 0.54
27 21 0.46
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.41
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTTACAAACTG
Found at i:22902640 original size:27 final size:27
Alignment explanation
Indices: 22902605--22902658 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
22902595 TTCAAATTTT
22902605 CGGCATTCCAGCATTTTCGCATTTGCC
1 CGGCATTCCAGCATTTTCGCATTTGCC
22902632 CGGCATTCCAGCATTTTCGCATTTGCC
1 CGGCATTCCAGCATTTTCGCATTTGCC
22902659 GCTACAGCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.15, C:0.33, G:0.19, T:0.33
Consensus pattern (27 bp):
CGGCATTCCAGCATTTTCGCATTTGCC
Found at i:22904825 original size:13 final size:13
Alignment explanation
Indices: 22904784--22904831 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
22904774 ATACATATAT
22904784 TTTCATATAACCA
1 TTTCATATAACCA
* *
22904797 ATTCACATAACCA
1 TTTCATATAACCA
*
22904810 TTTCATATAACTA
1 TTTCATATAACCA
*
22904823 TTTCGTATA
1 TTTCATATA
22904832 TTAGTTTCAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.02, T:0.40
Consensus pattern (13 bp):
TTTCATATAACCA
Found at i:22917630 original size:26 final size:26
Alignment explanation
Indices: 22917594--22917648 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
22917584 TAGAATAGAA
22917594 ATTGAGTATCAAGTGGGTTACAAGGT
1 ATTGAGTATCAAGTGGGTTACAAGGT
22917620 ATTGAGTATCAAGTGGGTTACAAGGT
1 ATTGAGTATCAAGTGGGTTACAAGGT
22917646 ATT
1 ATT
22917649 CTTGAAGGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.07, G:0.29, T:0.33
Consensus pattern (26 bp):
ATTGAGTATCAAGTGGGTTACAAGGT
Found at i:22920848 original size:64 final size:64
Alignment explanation
Indices: 22920768--22920939 Score: 175
Period size: 67 Copynumber: 2.7 Consensus size: 64
22920758 AAACATTATG
* * *
22920768 ATGTAGCTAGGTCGCATGAGTGATACTATGTGTACACCATGTAGACAAAAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGAGTGGTACTATGTGTACACCATGTAGACAAAAGAGCTACGAGATAA
* * * * * *
22920832 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGAGTGGTACTA--TG-TGTACACCATGTAGACAAAAGAGCTACGAGAT
22920897 AA
63 AA
* * * * * *
22920899 AT-TGGCTGGGTCACATGGGTGGTACTAAGTGTTCACCATGT
1 ATGTAGCTAGGTCGCATGAGTGGTACTATGTGTACACCATGT
22920940 GTACAAGAGA
Statistics
Matches: 86, Mismatches: 19, Indels: 7
0.77 0.17 0.06
Matches are distributed among these distances:
63 9 0.10
64 25 0.29
66 21 0.24
67 31 0.36
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGAGTGGTACTATGTGTACACCATGTAGACAAAAGAGCTACGAGATAA
Found at i:22926344 original size:47 final size:47
Alignment explanation
Indices: 22926290--22926763 Score: 427
Period size: 47 Copynumber: 10.1 Consensus size: 47
22926280 TTAGGATTTT
* ** * *
22926290 ATGTGATGAATGTAAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * *
22926337 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22926384 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
22926431 ATGTGGTGAGTATGAACATGCATATATGTGGTAAAGCCGAATGGCTC-
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC-CA
* * * * * *
22926478 ATGTGAAATATATATATGAGATATG--TATATGTGGTAAAGCCGAATGGCTA
1 ATGTG--AT-GA-ATGTGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
22926528 GTGTGA--AATATGTAGGCGATGTGCGTATAT-TG-T--GG--G--TGGCCA
1 ATGTGATGAATGTG-A-AC-A--TGCATATATGTGATAAGGCCGAATGGCCA
* *
22926570 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
22926617 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* *
22926664 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
22926711 ATGTGGTGAGTATGAACATGCATATATGTGGTAAAGCCGAATGGCTC-
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC-CA
22926758 ATGTGA
1 ATGTGA
22926764 AATATATATA
Statistics
Matches: 359, Mismatches: 44, Indels: 48
0.80 0.10 0.11
Matches are distributed among these distances:
39 7 0.02
40 2 0.01
41 2 0.01
42 12 0.03
43 3 0.01
44 11 0.03
45 4 0.01
46 2 0.01
47 265 0.74
48 6 0.02
49 3 0.01
50 33 0.09
51 5 0.01
52 4 0.01
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:22926791 original size:280 final size:280
Alignment explanation
Indices: 22926319--22926842 Score: 1012
Period size: 280 Copynumber: 1.9 Consensus size: 280
22926309 GTATATATGA
* *
22926319 GATAAGGCCGAATGGCCAATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCAA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAA
22926384 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAGTATGAACA
66 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAGTATGAACA
22926449 TGCATATATGTGGTAAAGCCGAATGGCTCATGTGAAATATATATATGAGATATGTATATGTGGTA
131 TGCATATATGTGGTAAAGCCGAATGGCTCATGTGAAATATATATATGAGATATGTATATGTGGTA
22926514 AAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATATTGTGGGTGGCCAATGTGATGA
196 AAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATATTGTGGGTGGCCAATGTGATGA
22926579 ATGTGAGCATGCATATGTGT
261 ATGTGAGCATGCATATGTGT
* *
22926599 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAGTGGCCA
1 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAA
22926664 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAGTATGAACA
66 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAGTATGAACA
22926729 TGCATATATGTGGTAAAGCCGAATGGCTCATGTGAAATATATATATGAGATATGTATATGTGGTA
131 TGCATATATGTGGTAAAGCCGAATGGCTCATGTGAAATATATATATGAGATATGTATATGTGGTA
22926794 AAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATATTGTGG
196 AAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATATTGTGG
22926843 CCGAACGACC
Statistics
Matches: 240, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
280 240 1.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.28
Consensus pattern (280 bp):
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCAA
ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCAATGTGGTGAGTATGAACA
TGCATATATGTGGTAAAGCCGAATGGCTCATGTGAAATATATATATGAGATATGTATATGTGGTA
AAGCCGAATGGCTAGTGTGAAATATGTAGGCGATGTGCGTATATTGTGGGTGGCCAATGTGATGA
ATGTGAGCATGCATATGTGT
Found at i:22927852 original size:37 final size:37
Alignment explanation
Indices: 22926971--22927851 Score: 1699
Period size: 37 Copynumber: 23.8 Consensus size: 37
22926961 ATATATTCCA
22926971 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927008 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927045 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
*
22927082 GGGAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927119 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927156 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927193 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927230 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927267 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927304 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927341 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927378 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927415 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927452 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927489 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927526 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927563 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927600 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927637 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927674 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927711 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
22927748 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
* *
22927785 GGTAAGACCCGATGACTACGTGTGGAGATTTTATCCG
1 GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
** * *
22927822 GGTAAGACTTGATAACTTCGTGTGGAGATT
1 GGTAAGACCCGATGACTACGTGTGGAGATT
22927852 TCGTCTGAGC
Statistics
Matches: 836, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
37 836 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
GGTAAGACCCGATGACTACGTGTGGAGATTATGTCCG
Found at i:22930423 original size:21 final size:20
Alignment explanation
Indices: 22930399--22930437 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
22930389 ATTTAATTAA
22930399 GAAATGTGTAAAATTAATGGT
1 GAAATGTGTAAAA-TAATGGT
*
22930420 GAAATGTGTGAAATAATG
1 GAAATGTGTAAAATAATG
22930438 AAAATTTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.31
Consensus pattern (20 bp):
GAAATGTGTAAAATAATGGT
Found at i:22932432 original size:20 final size:18
Alignment explanation
Indices: 22932394--22932432 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
22932384 CGTATGTCCC
*
22932394 CTATATTTTGAAAAATTT
1 CTATATTTTCAAAAATTT
22932412 CTATACTTTTCAAAAAGTTT
1 CTATA-TTTTCAAAAA-TTT
22932432 C
1 C
22932433 CTAAGTTCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 9 0.50
20 4 0.22
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (18 bp):
CTATATTTTCAAAAATTT
Found at i:22938020 original size:47 final size:47
Alignment explanation
Indices: 22937963--22938219 Score: 365
Period size: 47 Copynumber: 5.4 Consensus size: 47
22937953 ATTGATGTAC
* * *
22937963 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
22938010 AAGTATATATATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATAT--GTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22938059 ACA-TGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22938106 ACA-TGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 A-AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* *
22938153 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGG
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
22938200 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
22938220 TCCCGAAGGG
Statistics
Matches: 192, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 150 0.78
49 40 0.21
50 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.27
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:22938097 original size:22 final size:22
Alignment explanation
Indices: 22938070--22938191 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
22938060 CATGTGTATG
22938070 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * *
22938092 TGTGATGAATG-TGAACAT-GCATATA
1 TGTGAT-AAGGCCG-A-ATGGC-CA-A
*
22938117 TGAGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * ***
22938139 TGTGATGAATG-TGAAAGTGTATATA
1 TGTGAT-AAGGCCG-AA-TGGCCA-A
22938164 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
22938186 TGTGAT
1 TGTGAT
22938192 GGATGTGGAA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 21 0.30
23 17 0.24
24 17 0.24
25 15 0.21
ACGTcount: A:0.34, C:0.11, G:0.30, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:22941743 original size:27 final size:27
Alignment explanation
Indices: 22941686--22941745 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
22941676 ATACATCTCA
*
22941686 TAGGGGCATATAAATCATTTTACCATG
1 TAGGGGCATATAAATCATTTTACAATG
* * *
22941713 TAGGGGCATTTTAGTCATTTTATCAAT-
1 TAGGGGCATATAAATCATTTTA-CAATG
22941740 TAGGGG
1 TAGGGG
22941746 GTCTAGGTAC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 25 0.89
28 3 0.11
ACGTcount: A:0.28, C:0.12, G:0.23, T:0.37
Consensus pattern (27 bp):
TAGGGGCATATAAATCATTTTACAATG
Found at i:22943315 original size:46 final size:46
Alignment explanation
Indices: 22943248--22943603 Score: 307
Period size: 46 Copynumber: 7.7 Consensus size: 46
22943238 TGTAACCCGC
* * *
22943248 CCATAAGCGAACTCAGACTCAACTCAACGAGCTCGGGCATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
*
22943294 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCAT
* * * *
22943344 --TTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* * * *
22943387 CCATAAGTGAACTCGAACTCAACTCAATGAGCTT-AGGCCTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCGGGCATTCGCAT
* * * * *
22943433 CCATAAGTGAATTCGGACTCGACTCAATGAGTTTGGATGCCAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-CA-TTCGCAT
* * * *
22943482 --TTCA-TGAACTCGGACTCAACTCAACGAGTTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
* * ***
22943525 CCATAAGTGAACTCGAACTCAACTCAACGAGTTCAGATGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
**
22943571 CCATAAGTGAACTTAGACTCAACTCAACGAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTT
22943604 TGGATGCCAA
Statistics
Matches: 252, Mismatches: 39, Indels: 38
0.77 0.12 0.12
Matches are distributed among these distances:
42 4 0.02
43 7 0.03
44 1 0.00
45 6 0.02
46 184 0.73
47 33 0.13
48 4 0.02
49 5 0.02
50 6 0.02
51 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGCAT
Found at i:22943539 original size:138 final size:138
Alignment explanation
Indices: 22943248--22943612 Score: 556
Period size: 138 Copynumber: 2.6 Consensus size: 138
22943238 TGTAACCCGC
* ** *
22943248 CCATAAGCGAACTC-AGACTCAACTCAACGAGCTCGGGCATTCGCATCCATAAGTGAACTCGGAC
1 CCATAAGTGAACTCGA-ACTCAACTCAACGAGCTTAGGCATTCGCATCCATAAGTGAATTCGGAC
*
22943312 TCAACTCAACGAGTTCGGATGCCTAGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGG
65 TCAACTCAACGAGTTTGGATGCC-AGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGG
22943377 ACGTTCGCAT
129 ACGTTCGCAT
* *
22943387 CCATAAGTGAACTCGAACTCAACTCAATGAGCTTAGGCCTTCGCATCCATAAGTGAATTCGGACT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTTAGGCATTCGCATCCATAAGTGAATTCGGACT
* *
22943452 CGACTCAATGAGTTTGGATGCCAGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGGAC
66 CAACTCAACGAGTTTGGATGCCAGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGGAC
22943517 GTTCGCAT
131 GTTCGCAT
*** *
22943525 CCATAAGTGAACTCGAACTCAACTCAACGAG-TTCAGATGTTCGCATCCATAAGTGAACTT-AGA
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTT-AGGCATTCGCATCCATAAGTGAA-TTCGGA
22943588 CTCAACTCAACGAGTTTGGATGCCA
64 CTCAACTCAACGAGTTTGGATGCCA
22943613 AAATATTTGA
Statistics
Matches: 207, Mismatches: 16, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
137 2 0.01
138 126 0.61
139 78 0.38
140 1 0.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.24
Consensus pattern (138 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTTAGGCATTCGCATCCATAAGTGAATTCGGACT
CAACTCAACGAGTTTGGATGCCAGTTACATTTCATGAACTCGGACTCAACTCAACGAGTTCGGAC
GTTCGCAT
Found at i:22953031 original size:104 final size:104
Alignment explanation
Indices: 22952851--22953058 Score: 380
Period size: 104 Copynumber: 2.0 Consensus size: 104
22952841 ATTCCCTCAT
* *
22952851 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGTGTTTCGGTCGATTTCTTATAC
1 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGCGTTTCGGTCGACTTCTTATAC
22952916 CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
66 CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
22952955 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGCGTTTCGGTCGACTTCTTATAC
1 AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGCGTTTCGGTCGACTTCTTATAC
* *
22953020 CCACATGGCAAGAGCAGCAAAATTAAACACTTCCTTGCA
66 CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
22953059 TCAAGCAGTC
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 100 1.00
ACGTcount: A:0.32, C:0.31, G:0.11, T:0.25
Consensus pattern (104 bp):
AAAATCCCTCCATCACCAATTCAAACTTCACTCCACTTAGCAGCGTTTCGGTCGACTTCTTATAC
CCACACGGCAAGAGCAACAAAATTAAACACTTCCTTGCA
Found at i:22955041 original size:26 final size:26
Alignment explanation
Indices: 22955012--22955064 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
22955002 TTAAACATGC
22955012 ATTTAGGTCAATTTA-CTCCTAGGGGT
1 ATTTAGGT-AATTTATCTCCTAGGGGT
* * *
22955038 ATTTTGGTACTTTATCTCCTATGGGT
1 ATTTAGGTAATTTATCTCCTAGGGGT
22955064 A
1 A
22955065 AAACTATAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.21, C:0.15, G:0.21, T:0.43
Consensus pattern (26 bp):
ATTTAGGTAATTTATCTCCTAGGGGT
Found at i:22964196 original size:24 final size:24
Alignment explanation
Indices: 22964157--22964262 Score: 122
Period size: 24 Copynumber: 4.4 Consensus size: 24
22964147 GCCGGCCAAC
* * *
22964157 TCCTGCTCCTTGATCATCTTCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
* *
22964182 TCTTCTCCTTTATCAACTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
22964206 TCCTCTCCCTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
* *
22964230 TCCTCTCCCTAATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
22964254 TCTTCTCCT
1 TCCTCTCCT
22964263 GACAGCCTTT
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
24 68 0.96
25 3 0.04
ACGTcount: A:0.21, C:0.38, G:0.04, T:0.38
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:22964213 original size:12 final size:12
Alignment explanation
Indices: 22964169--22964262 Score: 57
Period size: 12 Copynumber: 7.8 Consensus size: 12
22964159 CTGCTCCTTG
*
22964169 ATCATCTTCTAA
1 ATCATCTCCTAA
* **
22964181 ATCTTCTCCTTT
1 ATCATCTCCTAA
*
22964193 ATCAACTCCTAA
1 ATCATCTCCTAA
* *
22964205 ATCCTCTCCCT-T
1 ATCATCT-CCTAA
*
22964217 ATCAGCTCCTAA
1 ATCATCTCCTAA
*
22964229 ATCCTCTCCCT-A
1 ATCATCT-CCTAA
*
22964241 ATCAGCTCCTAA
1 ATCATCTCCTAA
*
22964253 ATCTTCTCCT
1 ATCATCTCCT
22964263 GACAGCCTTT
Statistics
Matches: 58, Mismatches: 20, Indels: 8
0.67 0.23 0.09
Matches are distributed among these distances:
11 6 0.10
12 46 0.79
13 6 0.10
ACGTcount: A:0.23, C:0.37, G:0.02, T:0.37
Consensus pattern (12 bp):
ATCATCTCCTAA
Found at i:22968658 original size:38 final size:39
Alignment explanation
Indices: 22968607--22968716 Score: 98
Period size: 38 Copynumber: 2.8 Consensus size: 39
22968597 GTTTAAGTCA
* *
22968607 TTAATTACATCATAATTTAAACAT-TATTAATATGAG-TT
1 TTAATTATATCATAATTTAAACATCT-TTAATAAGAGATT
* ** *
22968645 TTAATTATTTCATAATTCGAACATCTTTAATAAGGGATT
1 TTAATTATATCATAATTTAAACATCTTTAATAAGAGATT
* * * *
22968684 TTAATTATGTCATAGTTTAGGACATCTTAAATA
1 TTAATTATATCATAATTTA-AACATCTTTAATA
22968717 TATGTTTTAA
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
38 28 0.49
39 18 0.32
40 11 0.19
ACGTcount: A:0.38, C:0.09, G:0.09, T:0.44
Consensus pattern (39 bp):
TTAATTATATCATAATTTAAACATCTTTAATAAGAGATT
Found at i:22968725 original size:39 final size:38
Alignment explanation
Indices: 22968682--22968764 Score: 94
Period size: 38 Copynumber: 2.1 Consensus size: 38
22968672 TAATAAGGGA
* * *
22968682 TTTTAATTATGTCATAGTTTAGGACATCTTAAATATATG
1 TTTTAAATATGTCATAG-TTAAGACATCTTAAATACATG
* * *
22968721 TTTTAAATGTGTCCTAGTTAAGACATCTTTAATACATG
1 TTTTAAATATGTCATAGTTAAGACATCTTAAATACATG
22968759 TCTTTA
1 T-TTTA
22968765 GTTCAGACAT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
38 19 0.51
39 18 0.49
ACGTcount: A:0.31, C:0.11, G:0.12, T:0.46
Consensus pattern (38 bp):
TTTTAAATATGTCATAGTTAAGACATCTTAAATACATG
Found at i:22969940 original size:31 final size:27
Alignment explanation
Indices: 22969903--22969959 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
22969893 TTTGAAGTAC
22969903 AAAGTTTGCAATATATAAATAAAAAAAGAAG
1 AAAGTTT-CAA-AT-TAAA-AAAAAAAGAAG
22969934 AAAGTTTCAAATTAAAAAAAAAAGAA
1 AAAGTTTCAAATTAAAAAAAAAAGAA
22969960 AAGAAAAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 10 0.38
28 4 0.15
29 2 0.08
30 3 0.12
31 7 0.27
ACGTcount: A:0.65, C:0.04, G:0.11, T:0.21
Consensus pattern (27 bp):
AAAGTTTCAAATTAAAAAAAAAAGAAG
Found at i:22974392 original size:48 final size:47
Alignment explanation
Indices: 22974255--22974392 Score: 161
Period size: 48 Copynumber: 2.9 Consensus size: 47
22974245 CGCACTCTAG
* * * * *
22974255 GTGCCAATATCACGGCTCGACGCCAAACCAATGAAGCTCGCACCAGAA
1 GTGCTAATATCATGGC-CGAAGCCAAATCAATGAAGCTCGTACCAGAA
*
22974303 GTGCTAATATCATGGCCTGAAGCCAAATCAATGAAGATCGTACCCA-AA
1 GTGCTAATATCATGGCC-GAAGCCAAATCAATGAAGCTCGTA-CCAGAA
* *
22974351 GTGCTAATATCATGGCGCGAAGCAAAATCAATAAAGCTCGTA
1 GTGCTAATATCATGGC-CGAAGCCAAATCAATGAAGCTCGTA
22974393 ATGACATGTC
Statistics
Matches: 78, Mismatches: 9, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
47 1 0.01
48 73 0.94
49 4 0.05
ACGTcount: A:0.36, C:0.25, G:0.20, T:0.18
Consensus pattern (47 bp):
GTGCTAATATCATGGCCGAAGCCAAATCAATGAAGCTCGTACCAGAA
Found at i:22974992 original size:16 final size:16
Alignment explanation
Indices: 22974968--22974999 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
22974958 CTTGGGACAT
*
22974968 TCCTGTGTGGGCAGGC
1 TCCTATGTGGGCAGGC
22974984 TCCTATGTGGGCAGGC
1 TCCTATGTGGGCAGGC
22975000 CATTTGGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.09, C:0.25, G:0.41, T:0.25
Consensus pattern (16 bp):
TCCTATGTGGGCAGGC
Found at i:22976234 original size:42 final size:43
Alignment explanation
Indices: 22976129--22976280 Score: 152
Period size: 42 Copynumber: 3.6 Consensus size: 43
22976119 ATACCAATCT
* *
22976129 CATATCCCAGATATGGTCTTA-A-TG-AGATCTCGTATCGATGC
1 CATATCCCAGATATGGTCTTACACAGAAG-TCTCATATCGATGC
* * *
22976170 CAATAGTCCCAGTTATGGTCTTACACA-AAGTCTCTTATCGATTC
1 C-ATA-TCCCAGATATGGTCTTACACAGAAGTCTCATATCGATGC
* * * **
22976214 CATATCCCAAATATGCTCTTACA-AGAAGTCTCACATAAATGC
1 CATATCCCAGATATGGTCTTACACAGAAGTCTCATATCGATGC
22976256 CATATCCCAGATATGGTCTTACACA
1 CATATCCCAGATATGGTCTTACACA
22976281 TAGTTTTACT
Statistics
Matches: 90, Mismatches: 14, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.02
42 52 0.58
43 20 0.22
44 14 0.16
45 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (43 bp):
CATATCCCAGATATGGTCTTACACAGAAGTCTCATATCGATGC
Found at i:22986577 original size:40 final size:40
Alignment explanation
Indices: 22986460--22986673 Score: 242
Period size: 40 Copynumber: 5.4 Consensus size: 40
22986450 AAGCCAAGTA
* * *
22986460 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
22986498 CTTTCGGGACATAG-CCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22986537 CCTTCGGGACTTAGCCCGGGTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
22986577 CCTTCGGGACTTAGCCCAGATGTAATAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
22986617 CCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACT--CGCACAAATG
22986658 CCTTCGGGACTTAGCC
1 CCTTCGGGACTTAGCC
22986674 TGGTTATCAT
Statistics
Matches: 151, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
37 1 0.01
38 27 0.18
39 16 0.11
40 83 0.55
41 21 0.14
42 3 0.02
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:22987844 original size:18 final size:17
Alignment explanation
Indices: 22987821--22987854 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
22987811 TCGAGCTAAC
22987821 AAATAAATAAAATAAAAT
1 AAATAAATAAAA-AAAAT
22987839 AAATAAATAAAAAAAA
1 AAATAAATAAAAAAAA
22987855 CATGCATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (17 bp):
AAATAAATAAAAAAAAT
Found at i:22987851 original size:14 final size:14
Alignment explanation
Indices: 22987821--22987850 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
22987811 TCGAGCTAAC
22987821 AAATAAATAAAATA
1 AAATAAATAAAATA
22987835 AAATAAAT-AAATA
1 AAATAAATAAAATA
22987848 AAA
1 AAA
22987851 AAAACATGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (14 bp):
AAATAAATAAAATA
Done.