Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 72 of 322
Found at i:23012992 original size:47 final size:47
Alignment explanation
Indices: 23012931--23014030 Score: 1957
Period size: 47 Copynumber: 23.4 Consensus size: 47
23012921 CAGCCAACAC
* * *
23012931 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
23012978 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * *
23013025 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
23013072 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
*
23013119 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013166 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013213 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013260 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013307 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013354 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013401 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013448 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013495 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013542 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013589 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013636 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013683 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013730 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013777 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013824 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
23013871 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * *
23013918 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
* * * * * * * * * *
23013965 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
**
23014012 AGTGCATAAATGTGATAAG
1 AGTGCATATGTGTGATAAG
23014031 TCCCGAAGGG
Statistics
Matches: 1030, Mismatches: 23, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 1030 1.00
ACGTcount: A:0.32, C:0.10, G:0.30, T:0.28
Consensus pattern (47 bp):
AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:23014205 original size:37 final size:37
Alignment explanation
Indices: 23014153--23014227 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
23014143 GCTCTAAAGG
* *
23014153 CCCGATGACTACGTGTGG-GACTTTTGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGA-TTATGTCCGGGTAAGA
*
23014190 CCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
23014227 C
1 C
23014228 TTCGTAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
Found at i:23020120 original size:158 final size:158
Alignment explanation
Indices: 23019832--23020140 Score: 618
Period size: 158 Copynumber: 2.0 Consensus size: 158
23019822 CTTATGAAGC
23019832 ATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAGTAAT
1 ATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAGTAAT
23019897 GAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTCACTA
66 GAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTCACTA
23019962 TAAATTGCAGAAATTGAATTACATAAGA
131 TAAATTGCAGAAATTGAATTACATAAGA
23019990 ATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAGTAAT
1 ATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAGTAAT
23020055 GAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTCACTA
66 GAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTCACTA
23020120 TAAATTGCAGAAATTGAATTA
131 TAAATTGCAGAAATTGAATTA
23020141 GGGGCTTAAT
Statistics
Matches: 151, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
158 151 1.00
ACGTcount: A:0.34, C:0.09, G:0.20, T:0.37
Consensus pattern (158 bp):
ATAATTATGTGTTCTTACCATTATGAATGAAATGATATTGTATGGATTTGGTGAATAATAGTAAT
GAATGAGTAAATTTAGCCTTGGCAGTTTTGGGTTACTACAGTGGTGCAACTTTGGAAATTCACTA
TAAATTGCAGAAATTGAATTACATAAGA
Found at i:23033850 original size:26 final size:22
Alignment explanation
Indices: 23033797--23033840 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
23033787 AAAAATGACC
23033797 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTTATTAT
*
23033819 AAAATTAATTAAAATTTATTAT
1 AAAATTAATCAAAATTTATTAT
23033841 GTTAATAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAATTAATCAAAATTTATTAT
Found at i:23040796 original size:40 final size:40
Alignment explanation
Indices: 23040712--23040936 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
23040702 TTGAATGATG
* * * *
23040712 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
23040752 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23040792 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23040831 TCCGGGTTAAGTCCCGAAGGTATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23040871 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
23040912 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23040937 AACGAGGAGC
Statistics
Matches: 162, Mismatches: 18, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
39 34 0.21
40 118 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23048782 original size:21 final size:21
Alignment explanation
Indices: 23048756--23048799 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
23048746 GCTAAGCCCG
*
23048756 AAGGCATTGGTGCGAGTTACT
1 AAGGCATTGGTGCGAGATACT
*
23048777 AAGGCATTTGTGCGAGATACT
1 AAGGCATTGGTGCGAGATACT
23048798 AA
1 AA
23048800 TTCCGGGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.27
Consensus pattern (21 bp):
AAGGCATTGGTGCGAGATACT
Found at i:23048791 original size:60 final size:60
Alignment explanation
Indices: 23048719--23048838 Score: 222
Period size: 60 Copynumber: 2.0 Consensus size: 60
23048709 AAGATCCGAT
*
23048719 GGCATTTGTGCGAGATACTAATTCTGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 GGCATTTGTGCGAGATACTAATTCCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
*
23048779 GGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 GGCATTTGTGCGAGATACTAATTCCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
23048839 ATCCGGGTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 58 1.00
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (60 bp):
GGCATTTGTGCGAGATACTAATTCCGAGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
Found at i:23048869 original size:40 final size:40
Alignment explanation
Indices: 23048777--23048905 Score: 190
Period size: 40 Copynumber: 3.2 Consensus size: 40
23048767 GCGAGTTACT
* *
23048777 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCG
* *
23048816 AAGGCATTGGTGCGAGTTACTAAATCCGGGTTAAGTCCCG
1 AAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCG
*
23048856 AAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCG
1 AAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCG
23048896 AAGGCATTTG
1 AAGGCATTTG
23048906 AACGAGGAGC
Statistics
Matches: 81, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 31 0.38
40 48 0.59
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
AAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCG
Found at i:23048919 original size:40 final size:40
Alignment explanation
Indices: 23048802--23048924 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 40
23048792 GATACTAATT
* ** *
23048802 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* ** *
23048840 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
* *
23048881 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTATAA
23048921 CCGG
1 CCGG
23048925 TTAAATTCCG
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
39 10 0.14
40 61 0.84
41 2 0.03
ACGTcount: A:0.24, C:0.23, G:0.30, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:23048927 original size:79 final size:79
Alignment explanation
Indices: 23048777--23048938 Score: 186
Period size: 79 Copynumber: 2.1 Consensus size: 79
23048767 GCGAGTTACT
* ** *
23048777 AAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATC
1 AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAATC
*
23048842 CGGGTTAAGTCCCG
66 CGGGTTAAATCCCG
* * * *
23048856 AAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTAT
1 AAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAA
*
23048919 ATCC-GGTTAAATTCCG
63 ATCCGGGTTAAATCCCG
23048935 AAGG
1 AAGG
23048939 TACGTGATTT
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 44 0.63
80 24 0.34
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAATC
CGGGTTAAATCCCG
Found at i:23055970 original size:39 final size:41
Alignment explanation
Indices: 23055875--23056058 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
23055865 TTGAATGATG
*
23055875 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
23055914 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
23055954 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* * *
23055993 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
23056033 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23056059 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 60 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:23056010 original size:79 final size:81
Alignment explanation
Indices: 23055875--23056058 Score: 213
Period size: 79 Copynumber: 2.3 Consensus size: 81
23055865 TTGAATGATG
23055875 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
23055938 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
23055953 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
*
23056014 ATTTGTGTGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
23056033 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23056059 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 13
0.82 0.06 0.12
Matches are distributed among these distances:
78 11 0.12
79 57 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:23056080 original size:79 final size:79
Alignment explanation
Indices: 23055927--23056091 Score: 185
Period size: 79 Copynumber: 2.1 Consensus size: 79
23055917 GGACTAAGAT
* ** *
23055927 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
23055992 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
23056006 CCGAAGGCATTTGTGTGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
23056068 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
23056085 CCGAAGG
1 CCGAAGG
23056092 TACGTGATTT
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:23059555 original size:5 final size:5
Alignment explanation
Indices: 23059542--23059606 Score: 53
Period size: 5 Copynumber: 13.0 Consensus size: 5
23059532 CAACCCAATC
* * * *
23059542 TTTTT TTTTA TTTTC CTTT- TTTTC TTTTA TTTT- TTATTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA TTTTA TTTTA
*
23059591 TTTTTA TGTTA TTTTA
1 -TTTTA TTTTA TTTTA
23059607 GTTAAATATT
Statistics
Matches: 49, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
4 5 0.10
5 37 0.76
6 7 0.14
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:23059574 original size:11 final size:11
Alignment explanation
Indices: 23059560--23059605 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
23059550 TATTTTCCTT
*
23059560 TTTTTCTTTTA
1 TTTTTATTTTA
*
23059571 TTTTT-TATTA
1 TTTTTATTTTA
23059581 -TTTTATTTTA
1 TTTTTATTTTA
*
23059591 TTTTTATGTTA
1 TTTTTATTTTA
23059602 TTTT
1 TTTT
23059606 AGTTAAATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 4 0.13
10 8 0.27
11 18 0.60
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.80
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:23059596 original size:19 final size:19
Alignment explanation
Indices: 23059542--23059597 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
23059532 CAACCCAATC
* ** *
23059542 TTTTTTTTTATTTTCCTTT
1 TTTTATTTTATTTTTATTA
*
23059561 TTTTCTTTTATTTTTTATTA
1 TTTTATTTTA-TTTTTATTA
23059581 TTTTATTTTATTTTTAT
1 TTTTATTTTATTTTTAT
23059598 GTTATTTTAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 16 0.52
20 15 0.48
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTATTTTATTTTTATTA
Found at i:23059602 original size:16 final size:16
Alignment explanation
Indices: 23059568--23059606 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
23059558 TTTTTTTCTT
*
23059568 TTATTTT-TTATTATT
1 TTATTTTATTATTATG
*
23059583 TTATTTTATTTTTATG
1 TTATTTTATTATTATG
23059599 TTATTTTA
1 TTATTTTA
23059607 GTTAAATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
TTATTTTATTATTATG
Found at i:23060905 original size:118 final size:118
Alignment explanation
Indices: 23060576--23060883 Score: 607
Period size: 118 Copynumber: 2.6 Consensus size: 118
23060566 TACAGCTTAG
23060576 ATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTCTACTTCGCGTCAAACGGT
1 ATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTCTACTTCGCGTCAAACGGT
23060641 TGTGTGATGTGACAAGTAAAACTCCGCTAGTCGAGGTTATGAATATGGCTCAA
66 TGTGTGATGTGACAAGTAAAACTCCGCTAGTCGAGGTTATGAATATGGCTCAA
23060694 ATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTCTACTTCGCGTCAAACGGT
1 ATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTCTACTTCGCGTCAAACGGT
23060759 TGTGTGATGTGACAAGTAAAACTCCGCTAGTCGAGGTTATGAATATGGCTCAA
66 TGTGTGATGTGACAAGTAAAACTCCGCTAGTCGAGGTTATGAATATGGCTCAA
*
23060812 ATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTCTACTTCGCGTCAAAAGGT
1 ATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTCTACTTCGCGTCAAACGGT
23060877 TGTGTGA
66 TGTGTGA
23060884 CGTGTTGGGT
Statistics
Matches: 189, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
118 189 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (118 bp):
ATCGTGACTGACTGAGTAACCGGGGTAGGGTGCTTGGGTTGTCATTCTACTTCGCGTCAAACGGT
TGTGTGATGTGACAAGTAAAACTCCGCTAGTCGAGGTTATGAATATGGCTCAA
Found at i:23061068 original size:25 final size:26
Alignment explanation
Indices: 23061031--23061088 Score: 82
Period size: 25 Copynumber: 2.3 Consensus size: 26
23061021 AATAAATTTT
* *
23061031 AAAAAAAGAAAAAAAAAAGAGAGAAG
1 AAAAAAAGAAAAAAAAAAGAAAAAAG
*
23061057 AAAAAAAG-AAAAAAAATGAAAAAAG
1 AAAAAAAGAAAAAAAAAAGAAAAAAG
23061082 AAAAAAA
1 AAAAAAA
23061089 TAAGTACTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 21 0.72
26 8 0.28
ACGTcount: A:0.84, C:0.00, G:0.14, T:0.02
Consensus pattern (26 bp):
AAAAAAAGAAAAAAAAAAGAAAAAAG
Found at i:23064003 original size:15 final size:15
Alignment explanation
Indices: 23063983--23064013 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23063973 AGCTAATGTC
*
23063983 GGGCCCATGAATAGG
1 GGGCCCATGAACAGG
23063998 GGGCCCATGAACAGG
1 GGGCCCATGAACAGG
23064013 G
1 G
23064014 CGTATCTGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.23, G:0.42, T:0.10
Consensus pattern (15 bp):
GGGCCCATGAACAGG
Found at i:23066100 original size:73 final size:73
Alignment explanation
Indices: 23066009--23066373 Score: 730
Period size: 73 Copynumber: 5.0 Consensus size: 73
23065999 TTTGGCTTCA
23066009 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
1 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
23066074 CAATTTAT
66 CAATTTAT
23066082 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
1 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
23066147 CAATTTAT
66 CAATTTAT
23066155 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
1 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
23066220 CAATTTAT
66 CAATTTAT
23066228 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
1 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
23066293 CAATTTAT
66 CAATTTAT
23066301 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
1 AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
23066366 CAATTTAT
66 CAATTTAT
23066374 GCTTAGTAAG
Statistics
Matches: 292, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 292 1.00
ACGTcount: A:0.41, C:0.18, G:0.23, T:0.18
Consensus pattern (73 bp):
AGATCCCGAGTCCGATAGCTGGAGAACCAAATCTATAAAACAGAGGAGCAATGAAACGGAGTAAG
CAATTTAT
Found at i:23066826 original size:39 final size:40
Alignment explanation
Indices: 23066709--23066893 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
23066699 GCTCCTCGTT
*
23066709 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
**
23066749 CAAATGCCTTCGGGACTTAATCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
23066789 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
23066828 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
23066869 CAAA-GTCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23066894 CATCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 76 0.62
41 13 0.11
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:23066879 original size:79 final size:80
Alignment explanation
Indices: 23066709--23066893 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
23066699 GCTCCTCGTT
* *
23066709 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAATCCG
1 CAAA-GCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAATCCG
* *
23066773 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* * *
23066790 CAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAATCCGG
* *
23066853 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
*
23066869 CAAAGTCTTCGGGACTTAGCCCGGA
1 CAAAGCCTTCGGGACTTAGCCCGGA
23066894 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 25 0.28
81 3 0.03
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAATCCGGA
TATAGTAACTAGCAC
Found at i:23072464 original size:34 final size:33
Alignment explanation
Indices: 23072368--23072465 Score: 101
Period size: 34 Copynumber: 2.9 Consensus size: 33
23072358 GCCTATGGGC
* *
23072368 CATACTGTTATCTGAAAAGGGGCTAAGGCCCAGT
1 CATACTGTTATTTGAAAA-GGGCTTAGGCCCAGT
* * *
23072402 -TTACCG-TATTCTGAAAAGGGCTTCGGCCCAGT
1 CATACTGTTATT-TGAAAAGGGCTTAGGCCCAGT
*
23072434 ACATACTGTTATTTGAATAGGGCTTAGGCCCA
1 -CATACTGTTATTTGAAAAGGGCTTAGGCCCA
23072466 ATGGGCTTGA
Statistics
Matches: 51, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
32 16 0.31
33 10 0.20
34 21 0.41
35 4 0.08
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (33 bp):
CATACTGTTATTTGAAAAGGGCTTAGGCCCAGT
Found at i:23074328 original size:29 final size:29
Alignment explanation
Indices: 23074293--23074495 Score: 178
Period size: 29 Copynumber: 7.0 Consensus size: 29
23074283 GATGGTTGAA
*
23074293 ACCATCCCTTTTCATATTTGATGGTCATC
1 ACCATCCCTTTTCATATTCGATGGTCATC
* * * **
23074322 ACTATCCCTTTTCGTATTCGACGGTTGTC
1 ACCATCCCTTTTCATATTCGATGGTCATC
* * *
23074351 ACCATTCCTTTTCATATTCAATGGTCGTC
1 ACCATCCCTTTTCATATTCGATGGTCATC
** * * *
23074380 ACTGTCCCTTTTTATATTCAATGGTCGA-A
1 ACCATCCCTTTTCATATTCGATGGTC-ATC
*
23074409 ACCATCCCTTTTCATATTCGATGGTCGA-A
1 ACCATCCCTTTTCATATTCGATGGTC-ATC
* * * *
23074438 ACCATCCCATTTCATAGTCAATGGTCGA-A
1 ACCATCCCTTTTCATATTCGATGGTC-ATC
*
23074467 ACCATCCCTTTTCATATTCGATGGGCATC
1 ACCATCCCTTTTCATATTCGATGGTCATC
23074496 GATATGTTGT
Statistics
Matches: 142, Mismatches: 30, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
28 1 0.01
29 141 0.99
ACGTcount: A:0.22, C:0.27, G:0.13, T:0.37
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTCGATGGTCATC
Found at i:23074361 original size:58 final size:58
Alignment explanation
Indices: 23074290--23074495 Score: 234
Period size: 58 Copynumber: 3.6 Consensus size: 58
23074280 AACGATGGTT
* * * *
23074290 GAAACCATCCCTTTTCATATTTGATGGTCATCACTATCCCTTTTCGTATTCGACGGTT
1 GAAACCATCCCTTTTCATATTCGATGGTCATCACTATCCCTTTTCATATTCAACGGTC
** * * * * * *
23074348 GTCACCATTCCTTTTCATATTCAATGGTCGTCACTGTCCCTTTTTATATTCAATGGTC
1 GAAACCATCCCTTTTCATATTCGATGGTCATCACTATCCCTTTTCATATTCAACGGTC
* * * * *
23074406 GAAACCATCCCTTTTCATATTCGATGGTCGA-AACCATCCCATTTCATAGTCAATGGTC
1 GAAACCATCCCTTTTCATATTCGATGGTC-ATCACTATCCCTTTTCATATTCAACGGTC
*
23074464 GAAACCATCCCTTTTCATATTCGATGGGCATC
1 GAAACCATCCCTTTTCATATTCGATGGTCATC
23074496 GATATGTTGT
Statistics
Matches: 121, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
57 1 0.01
58 120 0.99
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.37
Consensus pattern (58 bp):
GAAACCATCCCTTTTCATATTCGATGGTCATCACTATCCCTTTTCATATTCAACGGTC
Found at i:23074475 original size:87 final size:87
Alignment explanation
Indices: 23074284--23074490 Score: 236
Period size: 87 Copynumber: 2.4 Consensus size: 87
23074274 TGTACTAACG
* * * * * *
23074284 ATGGTTGAAACCATCCCTTTTCATATTTGATGGTCATCACTATCCCTTTTCGTATTCGACGGTTG
1 ATGGTCGAAACCATCCCTTTTCATATTCGATGGTCATAACCATCCCTTTTCATATTCGACGGTCG
** * * *
23074349 TCACCATTCCTTTTCATATTCA
66 AAACCATCCCATTTCATAGTCA
** ** * * *
23074371 ATGGTCGTCACTGTCCCTTTTTATATTCAATGGTCGA-AACCATCCCTTTTCATATTCGATGGTC
1 ATGGTCGAAACCATCCCTTTTCATATTCGATGGTC-ATAACCATCCCTTTTCATATTCGACGGTC
23074435 GAAACCATCCCATTTCATAGTCA
65 GAAACCATCCCATTTCATAGTCA
23074458 ATGGTCGAAACCATCCCTTTTCATATTCGATGG
1 ATGGTCGAAACCATCCCTTTTCATATTCGATGG
23074491 GCATCGATAT
Statistics
Matches: 95, Mismatches: 24, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
87 94 0.99
88 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.14, T:0.38
Consensus pattern (87 bp):
ATGGTCGAAACCATCCCTTTTCATATTCGATGGTCATAACCATCCCTTTTCATATTCGACGGTCG
AAACCATCCCATTTCATAGTCA
Found at i:23090899 original size:16 final size:19
Alignment explanation
Indices: 23090878--23090914 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
23090868 GTTCGATTAC
23090878 TTAATT-TA-TTC-ACTAT
1 TTAATTATATTTCTACTAT
23090894 TTAATTATATTTCTACTAT
1 TTAATTATATTTCTACTAT
23090913 TT
1 TT
23090915 TTAGTGATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.33
17 2 0.11
18 3 0.17
19 7 0.39
ACGTcount: A:0.30, C:0.11, G:0.00, T:0.59
Consensus pattern (19 bp):
TTAATTATATTTCTACTAT
Found at i:23091720 original size:40 final size:41
Alignment explanation
Indices: 23091692--23091836 Score: 190
Period size: 40 Copynumber: 3.6 Consensus size: 41
23091682 GCCACCCCCT
*
23091692 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGT-AGTTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTCA-CTCGCA
* * * *
23091732 CAAATGCCTTCGGGACTTAGCCC-AAAATTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTCACTCGCA
*
23091772 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTCACTCGCA
*
23091812 CAAATGCCTTCGGGACCTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
23091837 TTATCATCCG
Statistics
Matches: 93, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 2 0.02
40 89 0.96
41 2 0.02
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTCACTCGCA
Found at i:23095612 original size:39 final size:40
Alignment explanation
Indices: 23095554--23095654 Score: 98
Period size: 40 Copynumber: 2.6 Consensus size: 40
23095544 AATCAAGCAT
* * * *
23095554 CTTCGGGG-TTTAGCCGGATATAACCACTCGCA-CAAGGC
1 CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
* *** *
23095592 CTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
*
23095632 CTTCGGGGCTTAGCCCGGATATA
1 CTTCGGGGCTTAACCCGGATATA
23095655 GTCGCTAGCA
Statistics
Matches: 49, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
38 7 0.14
39 18 0.37
40 24 0.49
ACGTcount: A:0.23, C:0.27, G:0.26, T:0.25
Consensus pattern (40 bp):
CTTCGGGGCTTAACCCGGATATAACCACTAGCATAAAGGC
Found at i:23095637 original size:40 final size:40
Alignment explanation
Indices: 23095590--23095734 Score: 182
Period size: 40 Copynumber: 3.6 Consensus size: 40
23095580 CTCGCACAAG
* * * *
23095590 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
*
23095630 GCCTTCGGGGCTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * * *
23095670 GCCTTCAGATCTTAGTCCGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
23095711 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
23095735 CATTCGAGTA
Statistics
Matches: 88, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
40 60 0.68
41 28 0.32
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:23101137 original size:46 final size:45
Alignment explanation
Indices: 23101078--23101244 Score: 196
Period size: 46 Copynumber: 3.6 Consensus size: 45
23101068 GCCCATAAGC
* *
23101078 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAGGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATA-GT
* * *
23101124 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTC-T--C
1 GAACTCGGACTCAACTCAACGAGTTCGG--G-C-ATTTGCATC-CATAGT
*
23101171 GAACTCGGACTCAACTCAACGAGTTTGGGCATTTGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCAT-AGT
23101217 GAACTCGGACTCAACTCAACGAGTTCGG
1 GAACTCGGACTCAACTCAACGAGTTCGG
23101245 ATGCTCAACA
Statistics
Matches: 102, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
45 1 0.01
46 54 0.53
47 27 0.26
48 1 0.01
49 1 0.01
50 7 0.07
51 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (45 bp):
GAACTCGGACTCAACTCAACGAGTTCGGGCATTTGCATCCATAGT
Found at i:23101190 original size:93 final size:93
Alignment explanation
Indices: 23101077--23101248 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
23101067 CGCCCATAAG
* *
23101077 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTTGCATCCATAGGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAGTGAACTCGGACTCAACTCA
23101142 ACGAGTTCGGATGCCTAGTTACATCTCT
66 ACGAGTTCGGATGCCTAGTTACATCTCT
* *
23101170 CGAACTCGGACTCAACTCAACGAGTTTGGGCATTTGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAGTGAACTCGGACTCAACTCA
23101235 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
23101249 TCAACAATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGGCATTTGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCT
Found at i:23107703 original size:27 final size:27
Alignment explanation
Indices: 23107672--23107849 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23107662 TAAATTGTAC
23107672 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23107699 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23107725 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23107753 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23107781 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23107808 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23107835 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23107850 GACTAAAAAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23107786 original size:82 final size:81
Alignment explanation
Indices: 23107673--23107828 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23107663 AAATTGTACA
* *
23107673 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23107737 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23107754 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
23107819 TGCGAGTTGA
65 TGCGAATTGA
23107829 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23107840 original size:82 final size:81
Alignment explanation
Indices: 23107669--23107849 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
23107659 GATTAAATTG
* *
23107669 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
23107734 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23107750 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
23107814 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23107832 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23107850 GACTAAAAAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23111963 original size:278 final size:278
Alignment explanation
Indices: 23111463--23112012 Score: 956
Period size: 278 Copynumber: 2.0 Consensus size: 278
23111453 CGATCAATTA
* * * *
23111463 AAGGGAGCATCAGTGTTTTCAAAGATAGATTTGAGATCGGGTTATTATCAGTTGCGGATTCGAGA
1 AAGGGAGCATCAGTGTTCTCAAAAATAGATTTGAGATCGGGCTATTATCAGTTGCGAATTCGAGA
* * * *
23111528 TTCGGACGTACCCAAAATTGCTTTCAGAACGAGGTACGGTCACTACGAGTTCTTAGTGATGCCGT
66 TTCGGACATACCCAAAACTGCCTTCAGAACGAGATACGGTCACTACGAGTTCTTAGTGATGCCGT
* * *
23111593 TTGGGCTCACTAATGCCCCTGCGGTGTTTATGGATTTGATGAATCGGATCTTCAGGCCGTATTTG
131 TTGGGCTCACTAATGCCCCTGCGGTATTTATGGATTTGATGAATCGGATCTTCAGACCATATTTG
*
23111658 GATCGGTTCGTAGTTGTGTTTATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
196 GATCGGTTCGTAGTTGTGTTCATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
*
23111723 CGAGCATCTGAGGAACTG
261 CGAGCACCTGAGGAACTG
*
23111741 AAGGGAGCCTCAGTGTTCTCAAAAATAGATTTGAGATCGGGCTATTATCAGTTGCGAATTCGAGA
1 AAGGGAGCATCAGTGTTCTCAAAAATAGATTTGAGATCGGGCTATTATCAGTTGCGAATTCGAGA
*
23111806 TTCGGACATACCCAAAACTGCCTTCAGAACGAGATATGGTCACTACGAGTTCTTAGTGATGCCGT
66 TTCGGACATACCCAAAACTGCCTTCAGAACGAGATACGGTCACTACGAGTTCTTAGTGATGCCGT
23111871 TTGGGCTCACTAATGCCCCTGCGGTATTTATGGATTTGATGAATCGGATCTTCAGACCATATTTG
131 TTGGGCTCACTAATGCCCCTGCGGTATTTATGGATTTGATGAATCGGATCTTCAGACCATATTTG
23111936 GATCGGTTCGTAGTTGTGTTCATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
196 GATCGGTTCGTAGTTGTGTTCATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
*
23112001 TGAGCACCTGAG
261 CGAGCACCTGAG
23112013 ACTAGTGTTG
Statistics
Matches: 256, Mismatches: 16, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
278 256 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (278 bp):
AAGGGAGCATCAGTGTTCTCAAAAATAGATTTGAGATCGGGCTATTATCAGTTGCGAATTCGAGA
TTCGGACATACCCAAAACTGCCTTCAGAACGAGATACGGTCACTACGAGTTCTTAGTGATGCCGT
TTGGGCTCACTAATGCCCCTGCGGTATTTATGGATTTGATGAATCGGATCTTCAGACCATATTTG
GATCGGTTCGTAGTTGTGTTCATTGATGACATCTTGGTCTATTCAAGAGATGAGACCGAACATGC
CGAGCACCTGAGGAACTG
Found at i:23113328 original size:77 final size:77
Alignment explanation
Indices: 23113201--23113352 Score: 277
Period size: 77 Copynumber: 2.0 Consensus size: 77
23113191 AATGGGATCG
** *
23113201 AGTCACAATGGACTTTGTGTCCGGACTGCCATTGTCCGCAAGTAAGAAGGATGCGATTTGGGTTG
1 AGTCACAATGGACTTTGTGTCCGGACTGCCATTGTCAACAAGTAAGAAGGATACGATTTGGGTTG
23113266 TTGTTGATAGGT
66 TTGTTGATAGGT
23113278 AGTCACAATGGACTTTGTGTCCGGACTGCCATTGTCAACAAGTAAGAAGGATACGATTTGGGTTG
1 AGTCACAATGGACTTTGTGTCCGGACTGCCATTGTCAACAAGTAAGAAGGATACGATTTGGGTTG
23113343 TTGTTGATAG
66 TTGTTGATAG
23113353 ACTGACTAAG
Statistics
Matches: 72, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (77 bp):
AGTCACAATGGACTTTGTGTCCGGACTGCCATTGTCAACAAGTAAGAAGGATACGATTTGGGTTG
TTGTTGATAGGT
Found at i:23116122 original size:27 final size:27
Alignment explanation
Indices: 23116091--23116268 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23116081 TAAATTGTAC
23116091 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23116118 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23116144 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23116172 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23116200 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23116227 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23116254 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23116269 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23116205 original size:82 final size:81
Alignment explanation
Indices: 23116092--23116247 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23116082 AAATTGTACA
* *
23116092 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23116156 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23116173 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
23116238 TGCGAGTTGA
65 TGCGAATTGA
23116248 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23116259 original size:82 final size:81
Alignment explanation
Indices: 23116088--23116268 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
23116078 GATTAAATTG
* *
23116088 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
23116153 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23116169 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
23116233 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23116251 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23116269 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23119634 original size:30 final size:30
Alignment explanation
Indices: 23119598--23119654 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
23119588 CCGAGCCTAG
*
23119598 GGGCAAAAGTGTAATTATGCAAAAGTTTAA
1 GGGCAAAAATGTAATTATGCAAAAGTTTAA
* *
23119628 GGGCAAAAATGTAATTTTGCCAAAGTT
1 GGGCAAAAATGTAATTATGCAAAAGTT
23119655 CATATTAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (30 bp):
GGGCAAAAATGTAATTATGCAAAAGTTTAA
Found at i:23121713 original size:43 final size:43
Alignment explanation
Indices: 23121618--23121730 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
23121608 CCAATATGAG
* * * ** *
23121618 ATTACATGTAAGACCATGTCTGAGACATTGGCATTGTATTGAG
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAAAA
23121661 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGT-TAAACA
1 ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAAA-A
* * *
23121704 ATTATGTGTAAGACCTTGTCTAGGACA
1 ATTACGTGTAAGACCATGTCTGGGACA
23121731 GTGGAATCAA
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
42 2 0.03
43 58 0.97
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (43 bp):
ATTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATAAAA
Found at i:23124828 original size:24 final size:24
Alignment explanation
Indices: 23124776--23124934 Score: 115
Period size: 24 Copynumber: 6.5 Consensus size: 24
23124766 AATGACATTG
* *
23124776 GCACTAAGTGTGCGGATTTTGAATG
1 GCACTATGTGTGCGGA-TTTGAATA
*
23124801 GCACTATGTGTGCGGAATTGAATA
1 GCACTATGTGTGCGGATTTGAATA
*
23124825 GCACTATGTGTGCTGATTTGAAT-
1 GCACTATGTGTGCGGATTTGAATA
* * * * *
23124848 GTCAATACGAGTGTGTGGATTTCTAA-G
1 G-CACTA--TGTGTGCGGATTT-GAATA
* ** * *
23124875 GCACTATGTGTGCGGGTGAGCATG
1 GCACTATGTGTGCGGATTTGAATA
*
23124899 GCACTAAGTGTGCGGATTTGAATA
1 GCACTATGTGTGCGGATTTGAATA
*
23124923 GCATTATGTGTG
1 GCACTATGTGTG
23124935 TGAAATCGAT
Statistics
Matches: 102, Mismatches: 26, Indels: 13
0.72 0.18 0.09
Matches are distributed among these distances:
23 2 0.02
24 68 0.67
25 15 0.15
26 14 0.14
27 3 0.03
ACGTcount: A:0.24, C:0.13, G:0.31, T:0.32
Consensus pattern (24 bp):
GCACTATGTGTGCGGATTTGAATA
Found at i:23124936 original size:74 final size:74
Alignment explanation
Indices: 23124782--23124921 Score: 178
Period size: 74 Copynumber: 1.9 Consensus size: 74
23124772 ATTGGCACTA
* * *
23124782 AGTGTGCGGATTTTGAATGGCACTATGTGTGCGGAATTGAATAGCACTATGTGTGCTGATTTGAA
1 AGTGTGCGGATTTTGAATGGCACTATGTGTGCGG-AGTGAATAGCACTAAGTGTGCGGATTTGAA
23124847 TGTCAATACG
65 TGTCAATACG
* *
23124857 AGTGTGTGGATTTCT-AA-GGCACTATGTGTGCGG-GTGAGCATGGCACTAAGTGTGCGGATTTG
1 AGTGTGCGGATTT-TGAATGGCACTATGTGTGCGGAGTGA--ATAGCACTAAGTGTGCGGATTTG
23124919 AAT
63 AAT
23124922 AGCATTATGT
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
72 3 0.05
74 39 0.68
75 14 0.25
76 1 0.02
ACGTcount: A:0.24, C:0.12, G:0.32, T:0.32
Consensus pattern (74 bp):
AGTGTGCGGATTTTGAATGGCACTATGTGTGCGGAGTGAATAGCACTAAGTGTGCGGATTTGAAT
GTCAATACG
Found at i:23126910 original size:102 final size:102
Alignment explanation
Indices: 23126704--23126907 Score: 394
Period size: 100 Copynumber: 2.0 Consensus size: 102
23126694 ATAAAATAAT
23126704 AGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACACAAAAAAAAAAGTGTGTAGTTGA
1 AGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACACAAAAAAAAAAGTGTGTAGTTGA
23126769 TTCTTTTCCCCCCCCATTGCCGTGAGCTAAAGAAAAG
66 TTCTTTTCCCCCCCCATTGCCGTGAGCTAAAGAAAAG
23126806 AGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACAC-AAAAAAAAA-TGTGTAGTTGA
1 AGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACACAAAAAAAAAAGTGTGTAGTTGA
23126869 TTCTTTTCCCCCCCCATTGCCGTGAGCTAAAGAAAAG
66 TTCTTTTCCCCCCCCATTGCCGTGAGCTAAAGAAAAG
23126906 AG
1 AG
23126908 AGGAGAAGAT
Statistics
Matches: 102, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
100 50 0.49
101 9 0.09
102 43 0.42
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.24
Consensus pattern (102 bp):
AGGCATGGAAATTAAATAATGAAAAGGAGTATGATGAATACACAAAAAAAAAAGTGTGTAGTTGA
TTCTTTTCCCCCCCCATTGCCGTGAGCTAAAGAAAAG
Found at i:23128107 original size:80 final size:79
Alignment explanation
Indices: 23128023--23128191 Score: 205
Period size: 79 Copynumber: 2.1 Consensus size: 79
23128013 CTAAGATCCG
*
23128023 AAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 AAGGCATTTGTGCGAGATATCAAA-TCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* *
23128087 TCCGGGTTAAGTCCCA
64 ACCGGGCTAAGTCCCA
* * * * * * *
23128103 AAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAAC
1 AAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAAAC
* *
23128168 CGGGCTATGTCCCG
66 CGGGCTAAGTCCCA
23128182 AAGGCATTTG
1 AAGGCATTTG
23128192 AACGAGGAGC
Statistics
Matches: 75, Mismatches: 13, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
79 37 0.49
80 35 0.47
81 3 0.04
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
AAGGCATTTGTGCGAGATATCAAATCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAAAC
CGGGCTAAGTCCCA
Found at i:23128171 original size:39 final size:39
Alignment explanation
Indices: 23127967--23128189 Score: 200
Period size: 40 Copynumber: 5.6 Consensus size: 39
23127957 TTGAATGCTG
* * * * *
23127967 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTA-AGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGA-T-ACTAAA
**
23128007 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCA-TTGTGCGAGATACTAAA
* *
23128046 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 -TCCGGGTTAAGTCCCGAAGG-CATTGTGCGAGATACTAAA
* * *
23128087 TCCGGGTTAAGTCCCAAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGATACTAAA
* * *
23128127 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
* * *
23128166 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
23128190 TGAACGAGGA
Statistics
Matches: 155, Mismatches: 20, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
39 40 0.26
40 101 0.65
41 13 0.08
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:23136516 original size:40 final size:40
Alignment explanation
Indices: 23136354--23136502 Score: 255
Period size: 40 Copynumber: 3.7 Consensus size: 40
23136344 TATTCGGATG
* *
23136354 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23136394 A-AATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAA-CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23136434 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
23136474 ATAACCGGGCTCAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
23136503 AGCAAGTAGC
Statistics
Matches: 104, Mismatches: 3, Indels: 4
0.94 0.03 0.04
Matches are distributed among these distances:
39 2 0.02
40 100 0.96
41 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:23136516 original size:80 final size:80
Alignment explanation
Indices: 23136354--23136535 Score: 253
Period size: 80 Copynumber: 2.3 Consensus size: 80
23136344 TATTCGGATG
*
23136354 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAAATCCGGGCTAAGTCCCGAAGGCA
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCA
* *
23136419 TTTGTGCGAGTTACT
66 TTTGAGCAAGTTACT
* *
23136434 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTCAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTA-AATCCGGGCTAAGTCCCGAAGGC
23136498 ATTTGAGCAAG-TAGCT
65 ATTTGAGCAAGTTA-CT
* * *
23136514 ATATCC-GGCTAAATTCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
23136536 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 8, Indels: 5
0.88 0.08 0.05
Matches are distributed among these distances:
79 16 0.17
80 74 0.80
81 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (80 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAATCCGGGCTAAGTCCCGAAGGCA
TTTGAGCAAGTTACT
Found at i:23146519 original size:17 final size:17
Alignment explanation
Indices: 23146487--23146520 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23146477 CACAACAGGC
*
23146487 CACATTTTCCTTCCTTT
1 CACATTTTCCTACCTTT
*
23146504 CACATTTTTCTACCTTT
1 CACATTTTCCTACCTTT
23146521 TTTTTACAAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.32, G:0.00, T:0.53
Consensus pattern (17 bp):
CACATTTTCCTACCTTT
Found at i:23148055 original size:15 final size:15
Alignment explanation
Indices: 23148016--23148057 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
23148006 ATAATTGTAA
*
23148016 TAAATA-TTTATTAT
1 TAAATATTTTAATAT
*
23148030 TAAA-ATATTAATAT
1 TAAATATTTTAATAT
23148044 TAAATATTTTAATA
1 TAAATATTTTAATA
23148058 ACATGTGCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 1 0.04
14 14 0.61
15 8 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAATATTTTAATAT
Found at i:23148209 original size:9 final size:8
Alignment explanation
Indices: 23148186--23148218 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
23148176 TATAATATTT
23148186 TATTTTAA
1 TATTTTAA
23148194 TATTTTAA
1 TATTTTAA
23148202 TAATTTTAA
1 T-ATTTTAA
23148211 TATTTTAA
1 TATTTTAA
23148219 AAATAATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TATTTTAA
Found at i:23148911 original size:17 final size:17
Alignment explanation
Indices: 23148889--23148924 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
23148879 AATAATTAGA
23148889 TTTCAACAAGTTTGGTT
1 TTTCAACAAGTTTGGTT
23148906 TTTCAACAAGTTTGGTT
1 TTTCAACAAGTTTGGTT
23148923 TT
1 TT
23148925 CTTGTCTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.50
Consensus pattern (17 bp):
TTTCAACAAGTTTGGTT
Found at i:23152927 original size:53 final size:51
Alignment explanation
Indices: 23152865--23152999 Score: 175
Period size: 53 Copynumber: 2.6 Consensus size: 51
23152855 TTTTTAAACT
* *
23152865 TACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTATGAAC
1 TACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTAT-AAC
* * *
23152917 TCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT--C
1 T-ACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATAAC
* *
23152967 TATCAATGCCATGTCTTGACATGGTCTTACATG
1 TACCATTGCCATGTCTTGACATGGTCTTACATG
23153000 AATTCCTTCC
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 28 0.38
50 2 0.03
52 1 0.01
53 42 0.58
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.36
Consensus pattern (51 bp):
TACCATTGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATAAC
Found at i:23157610 original size:42 final size:43
Alignment explanation
Indices: 23157502--23157673 Score: 132
Period size: 43 Copynumber: 4.0 Consensus size: 43
23157492 AGCTCGTACA
* * * * * *
23157502 ATGCCAACGTCCCAGACGTGGCCATACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* * * * *
23157545 ATGCCACTGTCGCATATAGGGTCTTACACGAAATCAAATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
* *
23157587 ATGCTAATGTCCCAGACATGGTCTTACATGTAAATCATAA-ATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATCA-AATATCG
* ** ** * *
23157631 ATGCCAACGTCTGAGATGTGGTCTTACACGAAAACACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
23157674 GATCCTATGT
Statistics
Matches: 98, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
42 26 0.27
43 45 0.46
44 27 0.28
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:23165641 original size:41 final size:41
Alignment explanation
Indices: 23165591--23165792 Score: 219
Period size: 41 Copynumber: 4.9 Consensus size: 41
23165581 AAAATGTTGC
* *
23165591 AAAACGTTGAGCAATAGTGGCGTTTTTAGACCAAACACCGCT
1 AAAA-GTTGAGCAATAGTGGCATTTTTAGTCCAAACACCGCT
** *
23165633 AAAAGTTGAGCAATAGTGGCATTTTTAGTCCAAATGCCACT
1 AAAAGTTGAGCAATAGTGGCATTTTTAGTCCAAACACCGCT
* * * *
23165674 AAAAATTTAGCAATAGTGGCATTTTTTGTTCAAACACCGCT
1 AAAAGTTGAGCAATAGTGGCATTTTTAGTCCAAACACCGCT
* * * ** *
23165715 AAAAGCTGAGCAATAGTAGCGTTTTTAGTCCAAATGCAGC-
1 AAAAGTTGAGCAATAGTGGCATTTTTAGTCCAAACACCGCT
*
23165755 AAAAGGTTGAGCTATAGTGGCATTTTTTA-TCCAAACAC
1 AAAA-GTTGAGCAATAGTGGCA-TTTTTAGTCCAAACAC
23165793 GACGAATATG
Statistics
Matches: 130, Mismatches: 28, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
40 4 0.03
41 116 0.89
42 10 0.08
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.29
Consensus pattern (41 bp):
AAAAGTTGAGCAATAGTGGCATTTTTAGTCCAAACACCGCT
Found at i:23165782 original size:82 final size:82
Alignment explanation
Indices: 23165589--23165792 Score: 268
Period size: 82 Copynumber: 2.5 Consensus size: 82
23165579 GGAAAATGTT
* * * * *
23165589 GCAAAACGTTGAGCAATAGTGGCGTTTTTAGACCAAACACCGCTAAAAGTTGAGCAATAGTGGCA
1 GCAAAA-GTTGAGCAATAGTGGCATTTTTTGTCCAAACACCGCTAAAAGCTGAGCAATAGTAGCA
23165654 TTTTTAGTCCAAATGCCA
65 TTTTTAGTCCAAATGCCA
* * * *
23165672 -CTAAAAATTTAGCAATAGTGGCATTTTTTGTTCAAACACCGCTAAAAGCTGAGCAATAGTAGCG
1 GC-AAAAGTTGAGCAATAGTGGCATTTTTTGTCCAAACACCGCTAAAAGCTGAGCAATAGTAGCA
23165736 TTTTTAGTCCAAATG-CA
65 TTTTTAGTCCAAATGCCA
* *
23165753 GCAAAAGGTTGAGCTATAGTGGCATTTTTTATCCAAACAC
1 GCAAAA-GTTGAGCAATAGTGGCATTTTTTGTCCAAACAC
23165793 GACGAATATG
Statistics
Matches: 104, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
81 6 0.06
82 94 0.90
83 4 0.04
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (82 bp):
GCAAAAGTTGAGCAATAGTGGCATTTTTTGTCCAAACACCGCTAAAAGCTGAGCAATAGTAGCAT
TTTTAGTCCAAATGCCA
Found at i:23168617 original size:27 final size:27
Alignment explanation
Indices: 23168579--23168674 Score: 115
Period size: 27 Copynumber: 3.6 Consensus size: 27
23168569 GGTCGTTAAG
**
23168579 CTCCTGATTTGTAAAATTATTGAAATA
1 CTCCTGATTTGTAAAATTATCAAAATA
23168606 CTCCTGATTTGTAAAATTATCAAAATA
1 CTCCTGATTTGTAAAATTATCAAAATA
*
23168633 C-CCTCAGA-TTGTAAAATTACCAAAATA
1 CTCCT--GATTTGTAAAATTATCAAAATA
* *
23168660 CCCCCGATTTGTAAA
1 CTCCTGATTTGTAAA
23168675 TTTTTCTAAG
Statistics
Matches: 61, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
26 5 0.08
27 52 0.85
28 4 0.07
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
CTCCTGATTTGTAAAATTATCAAAATA
Found at i:23168669 original size:54 final size:54
Alignment explanation
Indices: 23168587--23168743 Score: 147
Period size: 54 Copynumber: 2.9 Consensus size: 54
23168577 AGCTCCTGAT
*** *
23168587 TTGTAAAATTATTGAAATACTCCTGATTTGTAAAATTATCAAAATACCCTCAG-A
1 TTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCT-AGTA
* * * * * *
23168641 TTGTAAAATTACCAAAATACCCCCGATTTGTAAATTTTTCTAAGTACCCTTGTA
1 TTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCTAGTA
* * * * *
23168695 GTGTAATATTACCAAAATA-CCCTTATAGTGTAAAATTACCAAAATACCC
1 TTGTAAAATTACCAAAATACCCCTGAT-TTGTAAAATTATCAAAATACCC
23168744 CTGTAGGGTA
Statistics
Matches: 81, Mismatches: 20, Indels: 4
0.77 0.19 0.04
Matches are distributed among these distances:
53 6 0.07
54 75 0.93
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (54 bp):
TTGTAAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCTAGTA
Found at i:23168675 original size:26 final size:27
Alignment explanation
Indices: 23168584--23168744 Score: 103
Period size: 27 Copynumber: 6.0 Consensus size: 27
23168574 TTAAGCTCCT
*** * *
23168584 GATTTGTAAAATTATTGAAATACTCCT
1 GATTTGTAAAATTACCAAAATACCCCA
*
23168611 GATTTGTAAAATTATCAAAATACCCTCA
1 GATTTGTAAAATTACCAAAATACCC-CA
*
23168639 GA-TTGTAAAATTACCAAAATACCCCC
1 GATTTGTAAAATTACCAAAATACCCCA
* ** * * **
23168665 GATTTGTAAATTTTTCTAAGTACCCTT
1 GATTTGTAAAATTACCAAAATACCCCA
* * *
23168692 G-TAGTGTAATATTACCAAAATA-CCCT
1 GAT-TTGTAAAATTACCAAAATACCCCA
* *
23168718 TATAGTGTAAAATTACCAAAATACCCC
1 GAT-TTGTAAAATTACCAAAATACCCC
23168745 TGTAGGGTAA
Statistics
Matches: 106, Mismatches: 23, Indels: 9
0.77 0.17 0.07
Matches are distributed among these distances:
26 7 0.07
27 93 0.88
28 6 0.06
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.34
Consensus pattern (27 bp):
GATTTGTAAAATTACCAAAATACCCCA
Found at i:23168715 original size:27 final size:27
Alignment explanation
Indices: 23168615--23168757 Score: 119
Period size: 27 Copynumber: 5.3 Consensus size: 27
23168605 ACTCCTGATT
* * *
23168615 TGTAAAATTATCAAAATACCCTCAG-AT
1 TGTAAAATTACCAAAATACCCT-TGTAG
** *
23168642 TGTAAAATTACCAAAATACCCCCG-ATT
1 TGTAAAATTACCAAAATACCCTTGTA-G
* ** * *
23168669 TGTAAATTTTTCTAAGTACCCTTGTAG
1 TGTAAAATTACCAAAATACCCTTGTAG
* *
23168696 TGTAATATTACCAAAATACCCTTATAG
1 TGTAAAATTACCAAAATACCCTTGTAG
*
23168723 TGTAAAATTACCAAAATACCCCTGTAG
1 TGTAAAATTACCAAAATACCCTTGTAG
*
23168750 GGTAAAAT
1 TGTAAAAT
23168758 GACTGTTTTG
Statistics
Matches: 92, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 2 0.02
27 89 0.97
28 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.31
Consensus pattern (27 bp):
TGTAAAATTACCAAAATACCCTTGTAG
Found at i:23169144 original size:22 final size:22
Alignment explanation
Indices: 23169112--23169170 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
23169102 TAATCTGATT
*
23169112 ATGGCTCTGTGCCAACCTAAAA
1 ATGGCTTTGTGCCAACCTAAAA
* * * **
23169134 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAA
23169156 ATGGCTTTGTGCCAA
1 ATGGCTTTGTGCCAA
23169171 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.22, C:0.24, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAA
Found at i:23169339 original size:32 final size:31
Alignment explanation
Indices: 23169237--23169338 Score: 80
Period size: 32 Copynumber: 3.2 Consensus size: 31
23169227 ATATTTACCC
* * *
23169237 AAGGCTATGTGCCTATTATATTACTGTCGCTG
1 AAGGCTATGTGCCAATTATAATACTGT-ACTG
* ** * *
23169269 ATGGCTATGTGCCAAACATAATACAGTTAC-C
1 AAGGCTATGTGCCAATTATAATACTG-TACTG
*
23169300 AATGGCTTTGTGCCAATTATAATACTGCTACTG
1 AA-GGCTATGTGCCAATTATAATACTG-TACTG
23169333 AAGGCT
1 AAGGCT
23169339 TAGAGCTGCA
Statistics
Matches: 52, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
31 1 0.02
32 48 0.92
33 3 0.06
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (31 bp):
AAGGCTATGTGCCAATTATAATACTGTACTG
Found at i:23169582 original size:31 final size:33
Alignment explanation
Indices: 23169538--23169601 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
23169528 GTCACTGTAA
* *
23169538 TGGGCTTAGGCCCACTTG-TTCTGTTATTGGTT
1 TGGGCTTAGGCCCAATTGATTCTGTTATGGGTT
23169570 TGGGC-TAGGCCCAATTGATTCTGTTATGGGTT
1 TGGGCTTAGGCCCAATTGATTCTGTTATGGGTT
23169602 GTGACCCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 11 0.38
32 18 0.62
ACGTcount: A:0.12, C:0.17, G:0.30, T:0.41
Consensus pattern (33 bp):
TGGGCTTAGGCCCAATTGATTCTGTTATGGGTT
Found at i:23170255 original size:7 final size:7
Alignment explanation
Indices: 23170243--23170285 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
23170233 ATCTGTTTAT
23170243 CCCTAAA
1 CCCTAAA
23170250 CCCTAAA
1 CCCTAAA
*
23170257 CCAT-AA
1 CCCTAAA
*
23170263 CTCTAAA
1 CCCTAAA
23170270 CCCTAAA
1 CCCTAAA
23170277 CCCTAAA
1 CCCTAAA
23170284 CC
1 CC
23170286 ATATGCCATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 4 0.13
7 27 0.87
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.16
Consensus pattern (7 bp):
CCCTAAA
Found at i:23170349 original size:14 final size:14
Alignment explanation
Indices: 23170330--23170356 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23170320 CCCTTAATCC
23170330 ATTAAACCTTAAAT
1 ATTAAACCTTAAAT
23170344 ATTAAACCTTAAA
1 ATTAAACCTTAAA
23170357 ACTTTAAACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (14 bp):
ATTAAACCTTAAAT
Found at i:23170365 original size:15 final size:15
Alignment explanation
Indices: 23170330--23170372 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
23170320 CCCTTAATCC
23170330 ATTAAACCTT-AAAT
1 ATTAAACCTTAAAAT
23170344 ATTAAACCTTAAAACT
1 ATTAAACCTTAAAA-T
*
23170360 -TTAAACCCTAAAA
1 ATTAAACCTTAAAA
23170373 ATAAATTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 10 0.38
15 15 0.58
16 1 0.04
ACGTcount: A:0.51, C:0.19, G:0.00, T:0.30
Consensus pattern (15 bp):
ATTAAACCTTAAAAT
Found at i:23172383 original size:33 final size:33
Alignment explanation
Indices: 23172344--23172412 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
23172334 TTACTAGTCT
23172344 TAATAGAAAAACGATACGTCTAATGATAACTAA
1 TAATAGAAAAACGATACGTCTAATGATAACTAA
23172377 TAATAGAAAAACGATACGTCTAATGATAACTAA
1 TAATAGAAAAACGATACGTCTAATGATAACTAA
23172410 TAA
1 TAA
23172413 CCTTATATAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.25
Consensus pattern (33 bp):
TAATAGAAAAACGATACGTCTAATGATAACTAA
Found at i:23173732 original size:9 final size:9
Alignment explanation
Indices: 23173720--23173783 Score: 55
Period size: 9 Copynumber: 7.6 Consensus size: 9
23173710 TATATCATAT
23173720 CATAACTTA
1 CATAACTTA
23173729 CATAACTTA
1 CATAACTTA
* *
23173738 GATAA-ATA
1 CATAACTTA
*
23173746 TATAACTTA
1 CATAACTTA
23173755 CATAACTTA
1 CATAACTTA
*
23173764 -A-AA-ATA
1 CATAACTTA
*
23173770 TATAACTTA
1 CATAACTTA
23173779 CATAA
1 CATAA
23173784 ATATATGTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
6 2 0.05
7 3 0.07
8 9 0.21
9 29 0.67
ACGTcount: A:0.52, C:0.14, G:0.02, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:23173773 original size:24 final size:26
Alignment explanation
Indices: 23173716--23173783 Score: 113
Period size: 24 Copynumber: 2.7 Consensus size: 26
23173706 AATATATATC
23173716 ATATCATAACTTACATAACTTAGATAA
1 ATAT-ATAACTTACATAACTTAGATAA
23173743 ATATATAACTTACATAACTTA-A-AA
1 ATATATAACTTACATAACTTAGATAA
23173767 ATATATAACTTACATAA
1 ATATATAACTTACATAA
23173784 ATATATGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
24 19 0.46
25 1 0.02
26 17 0.41
27 4 0.10
ACGTcount: A:0.51, C:0.13, G:0.01, T:0.34
Consensus pattern (26 bp):
ATATATAACTTACATAACTTAGATAA
Found at i:23173776 original size:15 final size:17
Alignment explanation
Indices: 23173756--23173789 Score: 54
Period size: 15 Copynumber: 2.1 Consensus size: 17
23173746 TATAACTTAC
23173756 ATAACTTA-A-AAATAT
1 ATAACTTACATAAATAT
23173771 ATAACTTACATAAATAT
1 ATAACTTACATAAATAT
23173788 AT
1 AT
23173790 GTCATATCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.47
16 1 0.06
17 8 0.47
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAACTTACATAAATAT
Found at i:23173796 original size:26 final size:25
Alignment explanation
Indices: 23173716--23173803 Score: 81
Period size: 26 Copynumber: 3.4 Consensus size: 25
23173706 AATATATATC
*
23173716 ATATCATAACTTACATAACTTAGATAA
1 ATATCATAACTTACATAAATTA-AT-A
* *
23173743 ATAT-ATAACTTACATAACTTAAAA
1 ATATCATAACTTACATAAATTAATA
* *
23173767 ATAT-ATAACTTACATAAATATATGTC
1 ATATCATAACTTACATAAAT-TA-ATA
23173793 ATATCATAACT
1 ATATCATAACT
23173804 ATCATAACTT
Statistics
Matches: 53, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
24 19 0.36
25 3 0.06
26 21 0.40
27 10 0.19
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (25 bp):
ATATCATAACTTACATAAATTAATA
Found at i:23177197 original size:25 final size:25
Alignment explanation
Indices: 23177143--23177205 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
23177133 GTAAAAGGGA
* *
23177143 TTTTGCCCTAGTTTACCGAAAAGGG
1 TTTTGCCCCAGTTTACCGAAAAAGG
* *
23177168 CTTTGCCCCAGTTTATC-AAAACAGG
1 TTTTGCCCCAGTTTACCGAAAA-AGG
23177193 TTTTGCCCCAGTT
1 TTTTGCCCCAGTT
23177206 ATTAAAAGAG
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 4 0.12
25 28 0.88
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.33
Consensus pattern (25 bp):
TTTTGCCCCAGTTTACCGAAAAAGG
Found at i:23177491 original size:31 final size:30
Alignment explanation
Indices: 23177426--23177499 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 30
23177416 CGTTTACAGT
* *
23177426 AAAGGCTTCCGCCCAATGATATGATAATGA
1 AAAGGCTTCGGCCCAATGACATGATAATGA
* *
23177456 AAAGGCTTCGGCCCAGTGACATGAATAATGC
1 AAAGGCTTCGGCCCAATGACATG-ATAATGA
23177487 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
23177500 TAGTATATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 20 0.51
31 19 0.49
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAATGACATGATAATGA
Found at i:23184982 original size:10 final size:11
Alignment explanation
Indices: 23184967--23185000 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
23184957 GACTTTGATA
23184967 TACATGAT-TG
1 TACATGATATG
23184977 TACATGATATG
1 TACATGATATG
*
23184988 CACATGATATG
1 TACATGATATG
23184999 TA
1 TA
23185001 TGATATGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 8 0.38
11 13 0.62
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (11 bp):
TACATGATATG
Found at i:23185108 original size:25 final size:25
Alignment explanation
Indices: 23185063--23185133 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
23185053 GAGGAAGTGC
*
23185063 AAAAGGGCTTTTGCCCTAGTTTACCG
1 AAAAGGGC-TTTGCCCTAGTTTACCA
* *
23185089 AAAAGGGCTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTGCCCTAGTTTACCA
23185114 AAAAGGGCTTTGCCCTAGTT
1 AAAAGGGCTTTGCCCTAGTT
23185134 ATTAAAAGAG
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 33 0.80
26 8 0.20
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCTAGTTTACCA
Found at i:23185146 original size:24 final size:24
Alignment explanation
Indices: 23185062--23185146 Score: 100
Period size: 25 Copynumber: 3.4 Consensus size: 24
23185052 GGAGGAAGTG
*
23185062 CAAAAGGGCTTTTGCCCTAGTTTAC
1 CAAAAGGGC-TTTGCCCTAGTTTAT
*
23185087 CGAAAAGGGCTTTGCCCCAGTTTAT
1 C-AAAAGGGCTTTGCCCTAGTTTAT
23185112 CAAAAAGGGCTTTGCCCTAG-TTAT
1 C-AAAAGGGCTTTGCCCTAGTTTAT
*
23185136 TAAAAGAGGCT
1 CAAAAG-GGCT
23185147 AGGCCTCCAG
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
23 5 0.09
24 8 0.15
25 32 0.60
26 8 0.15
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (24 bp):
CAAAAGGGCTTTGCCCTAGTTTAT
Found at i:23185419 original size:31 final size:30
Alignment explanation
Indices: 23185354--23185427 Score: 103
Period size: 30 Copynumber: 2.4 Consensus size: 30
23185344 CGTTTACAGT
** *
23185354 AAAGGCTTCAACCCAATGATATGATAATGA
1 AAAGGCTTCGGCCCAATGACATGATAATGA
*
23185384 AAAGGCTTCGGCCCAATGACATGAATAATGC
1 AAAGGCTTCGGCCCAATGACATG-ATAATGA
23185415 AAAGGCTTCGGCC
1 AAAGGCTTCGGCC
23185428 TAGTATATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 20 0.51
31 19 0.49
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (30 bp):
AAAGGCTTCGGCCCAATGACATGATAATGA
Found at i:23189860 original size:42 final size:43
Alignment explanation
Indices: 23189813--23189990 Score: 173
Period size: 43 Copynumber: 4.2 Consensus size: 43
23189803 GAACATGACT
* * *
23189813 TTTAGCGGCGTTTTTGT-AGAAGCG-CAGCTAAAGGTCATGTTA
1 TTTAGCGGCATTTGTGTGAAAAGCGCCA-CTAAAGGTCATGTTA
* * *
23189855 TTTAGCGGTATTTGTGTGAAAAGTGCCACTAAAGGTCATGTTC
1 TTTAGCGGCATTTGTGTGAAAAGCGCCACTAAAGGTCATGTTA
* * ** *
23189898 TTTAGTGGCATTTGTGTGAAAGGC-CCACTAAAGGTCACATTC
1 TTTAGCGGCATTTGTGTGAAAAGCGCCACTAAAGGTCATGTTA
* * * * * *
23189940 TTCAGCGGCATCTGTGTGAAAAGCACCATTAAAGGTCACGTTC
1 TTTAGCGGCATTTGTGTGAAAAGCGCCACTAAAGGTCATGTTA
23189983 TTTAGCGG
1 TTTAGCGG
23189991 TGCTTCCTCA
Statistics
Matches: 114, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
42 50 0.44
43 62 0.54
44 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
TTTAGCGGCATTTGTGTGAAAAGCGCCACTAAAGGTCATGTTA
Found at i:23189890 original size:43 final size:42
Alignment explanation
Indices: 23189840--23189990 Score: 178
Period size: 43 Copynumber: 3.5 Consensus size: 42
23189830 AGAAGCGCAG
* * *
23189840 CTAAAGGTCATGTTATTTAGCGGTATTTGTGTGAAAAGTGCCA
1 CTAAAGGTCACGTTCTTTAGCGGCATTTGTGTGAAAAG-GCCA
* *
23189883 CTAAAGGTCATGTTCTTTAGTGGCATTTGTGTG-AAAGGCCCA
1 CTAAAGGTCACGTTCTTTAGCGGCATTTGTGTGAAAAGG-CCA
* * * *
23189925 CTAAAGGTCACATTCTTCAGCGGCATCTGTGTGAAAAGCACCA
1 CTAAAGGTCACGTTCTTTAGCGGCATTTGTGTGAAAAG-GCCA
*
23189968 TTAAAGGTCACGTTCTTTAGCGG
1 CTAAAGGTCACGTTCTTTAGCGG
23189991 TGCTTCCTCA
Statistics
Matches: 93, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 1 0.01
42 35 0.38
43 57 0.61
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
CTAAAGGTCACGTTCTTTAGCGGCATTTGTGTGAAAAGGCCA
Found at i:23197931 original size:25 final size:25
Alignment explanation
Indices: 23197878--23197945 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
23197868 AGACTCACCA
* *
23197878 CAGCTCATATGAGCTTACCGATTTG
1 CAGCTCGTATGAGCTTACCAATTTG
*
23197903 CAGCTCGTATGAGCTTATCAATATT-
1 CAGCTCGTATGAGCTTACCAAT-TTG
* *
23197928 CAGCTCGGAGGAGCTTAC
1 CAGCTCGTATGAGCTTAC
23197946 TGTTTATCGC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
25 34 0.94
26 2 0.06
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCAATTTG
Found at i:23200878 original size:40 final size:39
Alignment explanation
Indices: 23200688--23200871 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
23200678 CGAATGATGT
* * * *
23200688 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
23200728 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
23200768 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23200806 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
23200847 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
23200872 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23200902 original size:79 final size:79
Alignment explanation
Indices: 23200739--23200904 Score: 212
Period size: 79 Copynumber: 2.1 Consensus size: 79
23200729 CGGACTAAGA
* **
23200739 TCCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA
1 TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
*
23200804 AATCCGAGTTAAGT
66 AATCCGAGTTAAAT
* * *
23200818 CCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 TCCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
*
23200881 CTATATCCGA-TTAAAT
63 CTAAATCCGAGTTAAAT
23200897 TCCGAAGG
1 TCCGAAGG
23200905 TACGTGATTC
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.63
80 26 0.35
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
AATCCGAGTTAAAT
Found at i:23201994 original size:66 final size:66
Alignment explanation
Indices: 23201888--23202199 Score: 624
Period size: 66 Copynumber: 4.7 Consensus size: 66
23201878 TTTGAGTCTA
23201888 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGATTCAATACTGATGCCGTT
1 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGATTCAATACTGATGCCGTT
23201953 T
66 T
23201954 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGATTCAATACTGATGCCGTT
1 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGATTCAATACTGATGCCGTT
23202019 T
66 T
23202020 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGATTCAATACTGATGCCGTT
1 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGATTCAATACTGATGCCGTT
23202085 T
66 T
23202086 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGATTCAATACTGATGCCGTT
1 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGATTCAATACTGATGCCGTT
23202151 T
66 T
23202152 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGAT
1 GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGAT
23202200 ATATCCAAAT
Statistics
Matches: 246, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 246 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30
Consensus pattern (66 bp):
GTTTCTATAGAAACAAACGGCATCAGTATTGAATCCCTGTACAGGGATTCAATACTGATGCCGTT
T
Found at i:23203863 original size:72 final size:70
Alignment explanation
Indices: 23203529--23204572 Score: 406
Period size: 70 Copynumber: 14.9 Consensus size: 70
23203519 AGATTATTTC
* ** * * * ** *
23203529 TAAGGCTAGTAGGTTAAATACTGCAGCCCCTAAACAGTTAGTGAGAGTTTAAAGCTCTTAGCTGT
1 TAAGGCTCGTAGGTTAAATACCACAGCCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGT
*
23203594 AATAT
66 AATGT
*** * ** ** ** * * * *
23203599 TAAGGCTTACAGG-TAAAGAACCGTAGCCTTCAAATGGTTAGCGAGAGTTCAAAGCTCTCATCTA
1 TAAGGCTCGTAGGTTAAA-TACCACAGCCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTG
*
23203663 TTA-GAT
65 TAATG-T
** *** *
23203669 TAAGGCTAATAGG-TAAAGTACTGTAGCCCCCCAAATAGTTAGCGAGAGTTAAAAGCTCCCAACT
1 TAAGGCTCGTAGGTTAAA-TACCACAG-CCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACT
* * *
23203733 -CATTAT
64 GTAATGT
* * * * * *
23203739 TAAGACTCGCAGGTTTAATACCGCAGCCCACCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGCTG
1 TAAGGCTCGTAGGTTAAATACCACAGCCC-CCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTG
*
23203804 TCATTGT
65 T-AATGT
* * * * * * * * * **
23203811 TAAGGCTTGTAAGTTTAATATCATAGCCCCCAAATAGTTAGCAAGAGTTTAAAGCTCTCAGTTGT
1 TAAGGCTCGTAGGTTAAATACCACAGCCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGT
*
23203876 AAT-A
66 AATGT
* * * * * *
23203880 TAAGGCTCGTAGGTAAAATACCGCAGCCTCCGAAACAGTTAGTGAGAGCT-AAAGCTCCCAAATG
1 TAAGGCTCGTAGGTTAAATACCACAGCC-CCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTG
23203944 TAATGT
65 TAATGT
* * * *
23203950 TAAGGCTCGTAGGTTCAATACCACAGCCCCCCAAACAATTAGTGAGAGTTAAAAGCTCTCAACTG
1 TAAGGCTCGTAGGTTAAATACCACAG-CCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTG
* *
23204015 TCATTAT
65 T-AATGT
* * * * **
23204022 TAAGGCTCGTAGGTTAAATACCACAACCTCCCAAATAGTTAGCGAGAGTTCAAAGCCCCCAGTTG
1 TAAGGCTCGTAGGTTAAATACCACAGCC-CCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTG
23204087 TAATGT
65 TAATGT
* * * * * * * * * *
23204093 TAAGGCTCGTAAGTAAAATACCGCAACCTCCAGAATAGTTAGCGAG-GCCT-GAAGCTCCTAGCT
1 TAAGGCTCGTAGGTTAAATACCACAGCCCCCA-AACAGTTAGCGAGAG-TTAAAAGCTCCCAACT
* **
23204156 ATAACCT
64 GTAATGT
* ** * * ** * * * * ** * **
23204163 CAA-GCTCACAAGTTCAATACCGTAGCCCCTAAACAGTTAGCAAGATTTCAAAGCTCTTATCCAT
1 TAAGGCTCGTAGGTTAAATACCACAGCCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGT
*
23204227 AATAT
66 AATGT
** * * * * * * * * **
23204232 TAACACTCGCAGG-TAAAGTACCCCAACCCCTAAATAGTTAGCGAGAGTTCAAAGCTTCTAGTTG
1 TAAGGCTCGTAGGTTAAA-TACCACAGCCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTG
* *
23204296 TACTAT
65 TAATGT
** * * * * * * *
23204302 TAAGGCTCACAGG-TAAAGTATCACAACCCCTAAATAGTTAGCAAAAGTTCAAAGCTCCCAGA-T
1 TAAGGCTCGTAGGTTAAA-TACCACAGCCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCA-ACT
*
23204365 GTAATAT
64 GTAATGT
*** * * * * * * * *
23204372 TAAGGCTTACAGG-TAAAGTACCGCAACCCCTAAATAGCTAGCAAGAGTTCAAAGCTCCCAAATG
1 TAAGGCTCGTAGGTTAAA-TACCACAGCCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTG
* *
23204436 TCATAT
65 TAATGT
** * * * * * * * * *
23204442 TAAGGCTCACAAGTGAAGTACCAGAGCCCCCAAATAGTTAACGAGAGTTAAAAGCTCTC-AGTAT
1 TAAGGCTCGTAGGTTAAATACCACAGCCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGT
* *
23204506 CATTAT
66 -AATGT
** * ** * *
23204512 TAAGGCTCACAGGTTTAAGGCCGCAGCCCCCCAAATAGTTAGCGAGAGTTAAAAGCTCCCA
1 TAAGGCTCGTAGGTTAAATACCACAG-CCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCA
23204573 GCTATCTTTC
Statistics
Matches: 760, Mismatches: 188, Indels: 50
0.76 0.19 0.05
Matches are distributed among these distances:
68 12 0.02
69 86 0.11
70 422 0.56
71 158 0.21
72 82 0.11
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (70 bp):
TAAGGCTCGTAGGTTAAATACCACAGCCCCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGT
AATGT
Found at i:23203986 original size:211 final size:210
Alignment explanation
Indices: 23203529--23204572 Score: 623
Period size: 211 Copynumber: 5.0 Consensus size: 210
23203519 AGATTATTTC
* * * * *
23203529 TAAGGCTAGTAGGTTAAATACTGCAG-CCCCTAAACAGTTAGTGAGAGTTTAAAGCTCTTAGCTG
1 TAAGGCTCGTAGGTTAAATACCGCAGCCCCCCAAACAGTTAGTGAGAGTTAAAAGCTCTCAGCTG
* * * * ** *
23203593 T-AATATTAAGGC-T-TACAGGTAAAGAACCGTAGCCTTCAAATGGTTAGCGAGAGTTCAAAGCT
66 TCATTATTAAGGCTTGTA-AGTTAAA-TACCATAGCCCCCAAATAGTTAGCGAGAGTTCAAAGCT
* ** * * * * * *
23203655 CTCA-TCTATTAGATTAAGGCTAATAGGTAAAGTACTGTAGCCCCCCAAATAGTTAGCGAGAGTT
129 CTCAGT-T-GTA-ATTAAGGCTCGTAGGTAAAATACCGCAGCCTCCCAAACAGTTAGCGAGAGCT
* *
23203719 AAAAGCTCCCAACTCATTAT
191 AAAAGCTCCCAAATCAATAT
* * * * *
23203739 TAAGACTCGCAGGTTTAATACCGCAGCCCACCAAACAGTTAGCGAGAGTTAAAAGCTCTCAGCTG
1 TAAGGCTCGTAGGTTAAATACCGCAGCCCCCCAAACAGTTAGTGAGAGTTAAAAGCTCTCAGCTG
* * * * *
23203804 TCATTGTTAAGGCTTGTAAGTTTAATATCATAGCCCCCAAATAGTTAGCAAGAGTTTAAAGCTCT
66 TCATTATTAAGGCTTGTAAGTTAAATACCATAGCCCCCAAATAGTTAGCGAGAGTTCAAAGCTCT
* *
23203869 CAGTTGTAATATAAGGCTCGTAGGTAAAATACCGCAGCCTCCGAAACAGTTAGTGAGAGCT-AAA
131 CAGTTGTAAT-TAAGGCTCGTAGGTAAAATACCGCAGCCTCCCAAACAGTTAGCGAGAGCTAAAA
* *
23203933 GCTCCCAAATGTAATGT
195 GCTCCCAAAT-CAATAT
* * * *
23203950 TAAGGCTCGTAGGTTCAATACCACAGCCCCCCAAACAATTAGTGAGAGTTAAAAGCTCTCAACTG
1 TAAGGCTCGTAGGTTAAATACCGCAGCCCCCCAAACAGTTAGTGAGAGTTAAAAGCTCTCAGCTG
* * * * *
23204015 TCATTATTAAGGCTCGTAGGTTAAATACCACAACCTCCCAAATAGTTAGCGAGAGTTCAAAGCCC
66 TCATTATTAAGGCTTGTAAGTTAAATACCATAGCC-CCCAAATAGTTAGCGAGAGTTCAAAGCTC
* * * *
23204080 CCAGTTGTAATGTTAAGGCTCGTAAGTAAAATACCGCAACCT-CCAGAATAGTTAGCGAG-GCCT
130 TCAGTTGTAA--TTAAGGCTCGTAGGTAAAATACCGCAGCCTCCCA-AACAGTTAGCGAGAG-CT
* * * **
23204143 -GAAGCTCCTAGCTAT-AACCT
191 AAAAGCTCCCA--AATCAATAT
* ** * * * * ** * * * * **
23204163 CAA-GCTCACAAGTTCAATACCGTAG-CCCCTAAACAGTTAGCAAGATTTCAAAGCTCTTATCCA
1 TAAGGCTCGTAGGTTAAATACCGCAGCCCCCCAAACAGTTAGTGAGAGTTAAAAGCTCTCAGCTG
* ** * * * ** * *
23204226 T-AATATTAACACTCG-CAGGTAAAGTACCCCAACCCCTAAATAGTTAGCGAGAGTTCAAAGCT-
66 TCATTATTAAGGCTTGTAAGTTAAA-TACCATAGCCCCCAAATAGTTAGCGAGAGTTCAAAGCTC
** * * * * * * * * * *
23204288 TCTAGTTGTACTATTAAGGCTCACAGGTAAAGTATCACAACC-CCTAAATAGTTAGCAAAAGTTC
130 TC-AGTTGTA--ATTAAGGCTCGTAGGTAAAATACCGCAGCCTCCCAAACAGTTAGCGAGAGCTA
* *
23204352 AAAGCTCCCAGATGTAATAT
192 AAAGCTCCCAAAT-CAATAT
*** * * * * ** * * **
23204372 TAAGGCTTACAGG-TAAAGTACCGCA-ACCCCTAAATAGCTAGCAAGAGTTCAAAGCTCCCAAAT
1 TAAGGCTCGTAGGTTAAA-TACCGCAGCCCCCCAAACAGTTAGTGAGAGTTAAAAGCTCTCAGCT
*** * * * * *
23204435 GTCA-TATTAAGGCTCACAAGTGAAGTACCAGAGCCCCCAAATAGTTAACGAGAGTTAAAAGCTC
65 GTCATTATTAAGGCTTGTAAGTTAAATACCATAGCCCCCAAATAGTTAGCGAGAGTTCAAAGCTC
* * ** ** ** * * *
23204499 TCAGTATCATTATTAAGGCTCACAGGTTTAAGGCCGCAGCCCCCCAAATAGTTAGCGAGAGTTAA
130 TCAGT-T-GTAATTAAGGCTCGTAGGTAAAATACCGCAGCCTCCCAAACAGTTAGCGAGAGCTAA
23204564 AAGCTCCCA
193 AAGCTCCCA
23204573 GCTATCTTTC
Statistics
Matches: 654, Mismatches: 148, Indels: 63
0.76 0.17 0.07
Matches are distributed among these distances:
207 2 0.00
208 13 0.02
209 80 0.12
210 164 0.25
211 230 0.35
212 100 0.15
213 60 0.09
214 3 0.00
215 2 0.00
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.24
Consensus pattern (210 bp):
TAAGGCTCGTAGGTTAAATACCGCAGCCCCCCAAACAGTTAGTGAGAGTTAAAAGCTCTCAGCTG
TCATTATTAAGGCTTGTAAGTTAAATACCATAGCCCCCAAATAGTTAGCGAGAGTTCAAAGCTCT
CAGTTGTAATTAAGGCTCGTAGGTAAAATACCGCAGCCTCCCAAACAGTTAGCGAGAGCTAAAAG
CTCCCAAATCAATAT
Found at i:23204767 original size:59 final size:58
Alignment explanation
Indices: 23204646--23204811 Score: 178
Period size: 59 Copynumber: 2.8 Consensus size: 58
23204636 ACTCCCAGTT
* * * * * *
23204646 ATTGATTTTAGAAAATTTT-CTTAAGCTTAAAATAGCTCGA-GAACTAATATTCCCAGCT
1 ATTGATTTTAG-AAATTTTCCTTAAGCTCAAAACAACTC-ACAAACTAATATTCCCAACG
*
23204704 ATTGATTTTAGACGA-TTTCCTTAAAG-TCCAAAACAACTCACAAACTAATATTCCCAACG
1 ATTGATTTTAGA-AATTTTCCTT-AAGCT-CAAAACAACTCACAAACTAATATTCCCAACG
* *
23204763 ATTGATTTTAGAAATTTTCCTTAAGCTCAAAATAACTCGCAAACTAATA
1 ATTGATTTTAGAAATTTTCCTTAAGCTCAAAACAACTCACAAACTAATA
23204812 ATCCTATTTG
Statistics
Matches: 91, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
57 4 0.04
58 41 0.45
59 46 0.51
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.33
Consensus pattern (58 bp):
ATTGATTTTAGAAATTTTCCTTAAGCTCAAAACAACTCACAAACTAATATTCCCAACG
Found at i:23207953 original size:13 final size:13
Alignment explanation
Indices: 23207935--23207959 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23207925 AATGTCTATT
23207935 ATGCTTTGACTTG
1 ATGCTTTGACTTG
23207948 ATGCTTTGACTT
1 ATGCTTTGACTT
23207960 ATGGTGTAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.16, G:0.20, T:0.48
Consensus pattern (13 bp):
ATGCTTTGACTTG
Found at i:23208985 original size:27 final size:27
Alignment explanation
Indices: 23208955--23209076 Score: 154
Period size: 27 Copynumber: 4.5 Consensus size: 27
23208945 ATACTTTAGT
* **
23208955 TTACCAAAATACCCTTGGTTTACAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
23208982 TTACCAAAATACCCCTGGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
* *
23209009 TTATCAAAATACCCCTAGTTTGTAAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
** *
23209036 TTACCAAAATACCCCTAATTTGTGAAA
1 TTACCAAAATACCCCTGGTTTGTAAAA
**
23209063 TTACTGAAATACCC
1 TTACCAAAATACCC
23209077 TCGACCTGTA
Statistics
Matches: 85, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
TTACCAAAATACCCCTGGTTTGTAAAA
Found at i:23209087 original size:54 final size:54
Alignment explanation
Indices: 23208978--23209131 Score: 152
Period size: 54 Copynumber: 2.9 Consensus size: 54
23208968 CTTGGTTTAC
** * **
23208978 AAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCCGAGCCTGT
* *
23209032 AAAATTACCAAAATACCCCTAATTTGTGAAATTA-CTGAAATACCCTCGA-CCTGT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTATC-AAAATACCC-CGAGCCTGT
*** * *
23209086 AAAATTATTGAAATA-CCCTCAACTTGTAAAATTATCAAAGTACCCC
1 AAAATTACCAAAATACCCCT-AATTTGTAAAATTATCAAAATACCCC
23209132 TGATTTACAG
Statistics
Matches: 82, Mismatches: 14, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
53 6 0.07
54 73 0.89
55 3 0.04
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAATTTGTAAAATTATCAAAATACCCCGAGCCTGT
Found at i:23209120 original size:27 final size:27
Alignment explanation
Indices: 23208978--23209132 Score: 127
Period size: 27 Copynumber: 5.7 Consensus size: 27
23208968 CTTGGTTTAC
* ***
23208978 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTATCAAAATACCCCTAACTTGT
**
23209005 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTATCAAAATACCCCTAACTTGT
* *
23209032 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTATCAAAATACCCCTAACTTGT
* * * *
23209059 GAAATTA-CTGAAATA-CCCTCGACCTGT
1 AAAATTATC-AAAATACCCCT-AACTTGT
**
23209086 AAAATTATTGAAATA-CCCTCAACTTGT
1 AAAATTATCAAAATACCCCT-AACTTGT
*
23209113 AAAATTATCAAAGTACCCCT
1 AAAATTATCAAAATACCCCT
23209133 GATTTACAGA
Statistics
Matches: 108, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
26 5 0.05
27 99 0.92
28 4 0.04
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAAATTATCAAAATACCCCTAACTTGT
Found at i:23209219 original size:27 final size:27
Alignment explanation
Indices: 23209178--23209346 Score: 232
Period size: 27 Copynumber: 6.3 Consensus size: 27
23209168 AAATTACTAA
* *
23209178 AAATACCCCTATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* *
23209205 AAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCCTGTAGGGTAGAAATACCG
23209232 AAATACCCCTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
*
23209259 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* *
23209286 AAAAACCCCTGTAGGGTAG-AATAACTG
1 AAATACCCCTGTAGGGTAGAAAT-ACCG
* *
23209313 AAATACCCCTGCAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
*
23209340 AGATACC
1 AAATACC
23209347 TTGTGGGTTT
Statistics
Matches: 125, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.02
27 120 0.96
28 2 0.02
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAAATACCG
Found at i:23209730 original size:26 final size:27
Alignment explanation
Indices: 23209701--23209760 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
23209691 ACATATATAT
*
23209701 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
23209727 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
23209754 ATATCTG
1 ATATCTG
23209761 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:23209910 original size:6 final size:6
Alignment explanation
Indices: 23209879--23209966 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
23209869 TTGCATTCAC
* * *
23209879 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG AATCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* *
23209928 -TCACCTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
23209967 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 3 0.05
6 52 0.81
7 7 0.11
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:23209914 original size:31 final size:31
Alignment explanation
Indices: 23209879--23209957 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
23209869 TTGCATTCAC
*
23209879 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * * *
23209910 ATTCTGATTCTGAATCTGTCACCTGATTCTA
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
23209941 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
23209958 AGTTCTGATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.20, C:0.19, G:0.14, T:0.47
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:23211948 original size:27 final size:27
Alignment explanation
Indices: 23211918--23212035 Score: 155
Period size: 27 Copynumber: 4.4 Consensus size: 27
23211908 TTTAGTTTAT
* **
23211918 CAAAATACCCTTGGTTTACAAAATTAC
1 CAAAATACCCCTGGTTTGTAAAATTAC
*
23211945 CAAAATACCCCTGGTTTGTAAAATTAT
1 CAAAATACCCCTGGTTTGTAAAATTAC
*
23211972 CAAAATACCCCTAGTTTGTAAAATTAC
1 CAAAATACCCCTGGTTTGTAAAATTAC
* *
23211999 CAAAATACCCCTGATTTGTGAAATTAC
1 CAAAATACCCCTGGTTTGTAAAATTAC
**
23212026 TGAAATACCC
1 CAAAATACCC
23212036 TCGACCTGTA
Statistics
Matches: 80, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
CAAAATACCCCTGGTTTGTAAAATTAC
Found at i:23212046 original size:54 final size:54
Alignment explanation
Indices: 23211937--23212089 Score: 159
Period size: 54 Copynumber: 2.8 Consensus size: 54
23211927 CTTGGTTTAC
* * **
23211937 AAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCGAGCCTGT
* *
23211991 AAAATTACCAAAATACCCCTGATTTGTGAAATTA-CTGAAATACCCTCGA-CCTGT
1 AAAATTACCAAAATACCCCTGATTTGTAAAATTATC-AAAATACCC-CGAGCCTGT
*** * *
23212045 AAAATTATTGAAATA-CCCTCGACTTGTAAAATTATCAAAGTACCC
1 AAAATTACCAAAATACCCCT-GATTTGTAAAATTATCAAAATACCC
23212090 TGATTTACAG
Statistics
Matches: 82, Mismatches: 13, Indels: 8
0.80 0.13 0.08
Matches are distributed among these distances:
53 5 0.06
54 74 0.90
55 3 0.04
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTGATTTGTAAAATTATCAAAATACCCCGAGCCTGT
Found at i:23212079 original size:27 final size:26
Alignment explanation
Indices: 23211937--23212089 Score: 128
Period size: 27 Copynumber: 5.7 Consensus size: 26
23211927 CTTGGTTTAC
* **
23211937 AAAATTACCAAAATACCCCTGGTTTGT
1 AAAATTATCAAAATACCCC-GACTTGT
* *
23211964 AAAATTATCAAAATACCCCTAGTTTGT
1 AAAATTATCAAAATACCCCGA-CTTGT
* *
23211991 AAAATTACCAAAATACCCCTGATTTGT
1 AAAATTATCAAAATACCCC-GACTTGT
* * *
23212018 GAAATTA-CTGAAATACCCTCGACCTGT
1 AAAATTATC-AAAATACCC-CGACTTGT
**
23212045 AAAATTATTGAAATACCCTCGACTTGT
1 AAAATTATCAAAATACCC-CGACTTGT
*
23212072 AAAATTATCAAAGTACCC
1 AAAATTATCAAAATACCC
23212090 TGATTTACAG
Statistics
Matches: 106, Mismatches: 15, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.01
27 103 0.97
28 2 0.02
ACGTcount: A:0.39, C:0.22, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATTATCAAAATACCCCGACTTGT
Found at i:23212157 original size:27 final size:27
Alignment explanation
Indices: 23212127--23212320 Score: 205
Period size: 27 Copynumber: 7.2 Consensus size: 27
23212117 CAATTTAAAA
*
23212127 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
23212154 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
23212181 AAATA-TCGAAATACCCCTGTAGGGTCA-
1 AATTACT-GAAATACCCCTGTAGGGT-AG
* *
23212208 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
23212235 AAATACCGAAAAACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
23212262 AATAACTGAAATACCCCTGCAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
23212289 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
23212315 AATTAC
1 AATTAC
23212321 CATTTTACCC
Statistics
Matches: 143, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
26 16 0.11
27 126 0.88
28 1 0.01
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.22
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:23212193 original size:54 final size:54
Alignment explanation
Indices: 23212135--23212321 Score: 243
Period size: 54 Copynumber: 3.5 Consensus size: 54
23212125 AAAATTACTA
* *
23212135 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCG
*
23212189 AAATACCCCTGTAGGGTCA-AAATACCGAAATACCCCTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGT-AGAATTACCGAAATACCCCTGTAGGGTAGAAATACCG
* * * * *
23212243 AAAAACCCCTGTAGGGTAGAATAACTGAAATACCCCTGCAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCG
* * * *
23212297 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
23212322 ATTTTACCCC
Statistics
Matches: 115, Mismatches: 16, Indels: 5
0.85 0.12 0.04
Matches are distributed among these distances:
53 16 0.14
54 98 0.85
55 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (54 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAAATACCG
Found at i:23212223 original size:81 final size:81
Alignment explanation
Indices: 23212135--23212321 Score: 245
Period size: 81 Copynumber: 2.3 Consensus size: 81
23212125 AAAATTACTA
* * *
23212135 AAATACCCCTGTAGGGTAGAATTACCGAAATACCCTTGTAGGGTAGAAATATC-GAAATACCCCT
1 AAATACCCCTGTAGGGTAGAATTACCGAAAAACCCCTGTAGGGTAG-AATAACTGAAATACCCCT
*
23212199 GTAGGGTCA-AAATACCG
65 GCAGGGT-AGAAATACCG
*
23212216 AAATACCCCTGTAGGGTAGAAATACCGAAAAACCCCTGTAGGGTAGAATAACTGAAATACCCCTG
1 AAATACCCCTGTAGGGTAGAATTACCGAAAAACCCCTGTAGGGTAGAATAACTGAAATACCCCTG
*
23212281 CAGGGTAGAATTACCG
66 CAGGGTAGAAATACCG
* * * *
23212297 AGATA-CCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
23212322 ATTTTACCCC
Statistics
Matches: 93, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
80 22 0.24
81 71 0.76
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (81 bp):
AAATACCCCTGTAGGGTAGAATTACCGAAAAACCCCTGTAGGGTAGAATAACTGAAATACCCCTG
CAGGGTAGAAATACCG
Found at i:23212610 original size:27 final size:26
Alignment explanation
Indices: 23212566--23212617 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
23212556 CTCGCTGCAA
*
23212566 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
23212593 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
23212618 GCAGCCTCAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:23212685 original size:26 final size:27
Alignment explanation
Indices: 23212656--23212715 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
23212646 CCACATATAT
*
23212656 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
23212682 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
23212709 ATATCTG
1 ATATCTG
23212716 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:23212869 original size:31 final size:31
Alignment explanation
Indices: 23212834--23212908 Score: 96
Period size: 31 Copynumber: 2.4 Consensus size: 31
23212824 TTGCATTCTC
* ** * *
23212834 ATTCTGATTTTGGTTCTGTTACCTGATACTG
1 ATTCTGATTCTGAATCTGTCACCTGATACTA
*
23212865 ATTCTGATTCTGAATCTGTCACCTGATTCTA
1 ATTCTGATTCTGAATCTGTCACCTGATACTA
23212896 ATTCTGATTCTGA
1 ATTCTGATTCTGA
23212909 TTCTAGTTCT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.20, C:0.19, G:0.16, T:0.45
Consensus pattern (31 bp):
ATTCTGATTCTGAATCTGTCACCTGATACTA
Found at i:23212871 original size:6 final size:6
Alignment explanation
Indices: 23212828--23212921 Score: 59
Period size: 6 Copynumber: 15.3 Consensus size: 6
23212818 CTGGGATTGC
* * * *
23212828 ATTCTC ATTCTG ATTTTG GTTCTG -TTACCTG ATACTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG
* * *
23212877 AATCTG -TCACCTG ATTCTA ATTCTG ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
23212922 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 12, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
5 3 0.04
6 56 0.82
7 7 0.10
8 2 0.03
ACGTcount: A:0.19, C:0.19, G:0.15, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:23217958 original size:24 final size:24
Alignment explanation
Indices: 23217931--23218039 Score: 103
Period size: 25 Copynumber: 4.4 Consensus size: 24
23217921 TTGGTGGCCT
23217931 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
*
23217955 AGCCCTTTTTGATAAACTGGGGCAA
1 AGCCC-TTTTAATAAACTGGGGCAA
** * *
23217980 AGCCCTTTTCGGTAAACTAGGACAA
1 AGCCCTTTT-AATAAACTGGGGCAA
** *
23218005 AGCCCTTTTCGGTAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
23218030 AGCCCTTTTA
1 AGCCCTTTTA
23218040 GCACTTCCTC
Statistics
Matches: 74, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
23 1 0.01
24 14 0.19
25 59 0.80
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:23217978 original size:25 final size:25
Alignment explanation
Indices: 23217944--23218038 Score: 145
Period size: 25 Copynumber: 3.8 Consensus size: 25
23217934 CTCTTTTAAT
* *
23217944 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGGTA
23217969 AACTGGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
* *
23217994 AACTAGGACAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGGTA
*
23218019 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
23218039 AGCACTTCCT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 63 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGGTA
Found at i:23218289 original size:27 final size:27
Alignment explanation
Indices: 23218242--23218459 Score: 292
Period size: 27 Copynumber: 8.0 Consensus size: 27
23218232 GGGGCAAAAT
* * * *
23218242 GGTAATTTTTACCCCACAAGGGTATCTC
1 GGTAA-TTCTACCCTACAGGGGTATTTC
* * *
23218270 AGTAATTCTACCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
23218297 GGTATTTCTACCCTACAAGCGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
**
23218324 AATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
23218351 AGTAATTCTACCCTACATGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
23218378 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
23218405 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
23218432 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
23218459 G
1 G
23218460 ATATTTTACA
Statistics
Matches: 170, Mismatches: 20, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
27 166 0.98
28 4 0.02
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:23218694 original size:27 final size:27
Alignment explanation
Indices: 23218462--23219660 Score: 432
Period size: 27 Copynumber: 44.7 Consensus size: 27
23218452 GTATTTCGAT
* * *
23218462 ATTTTACAAATCGAGAGTATTTTGATA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * *
23218489 ATTTCACAAATCAAGGGTATTTTGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * *
23218516 ATTTTA-CAAGCCAGGGGTATTTTGGTA
1 ATTTTATAAATCGA-GGGTATTTTGGTA
* * *
23218543 ATTTTACAAA-CTAGGGGTATTTTAGTA
1 ATTTTATAAATCGA-GGGTATTTTGGTA
* * *
23218570 ATTTTACAAA-CTAGGGGTATTTTAGTA
1 ATTTTATAAATCGA-GGGTATTTTGGTA
* *
23218597 ATTTTACAAA-CAATGGGTATTTTGGTA
1 ATTTTATAAATCGA-GGGTATTTTGGTA
*
23218624 ATTTTACT-GATCGAGGGTATTTTGGTA
1 ATTTTA-TAAATCGAGGGTATTTTGGTA
* *
23218651 ATTTT-TGAAA-CTAAGGGTATTTTAGTA
1 ATTTTAT-AAATC-GAGGGTATTTTGGTA
* **** *
23218678 ATTTTGTAAATCGAGGGTAAAACGATA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ***
23218705 ATTTTGTAAATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* *** *
23218732 ATTTTGTAAATCGAGGGTAAAATGATA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * **
23218759 GTTCTATAAATCGAGGGTAAAATT-GTA
1 ATTTTATAAATCGAGGGT-ATTTTGGTA
* ***
23218786 ATTCTATAAATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * ***
23218813 ATTCTGTAAATTGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ***
23218840 ATTCTGT-AATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
23218866 ATTTTACAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
****
23218893 ATTTTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * ***
23218920 ATTCTGTAAATTGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ***
23218947 ATTCTGT-AATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
23218973 ATTTTACAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
****
23219000 ATTTTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * ***
23219027 ATTCTGTAAATTGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ***
23219054 ATTCTGT-AATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
23219080 ATTTTACAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
****
23219107 ATTTTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * ***
23219134 ATTCTGTAAATTGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ***
23219161 ATTCTGT-AATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
23219187 ATTTTACAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
****
23219214 ATTTTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * ***
23219241 ATTCTGTAAATTGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ***
23219268 ATTCTGT-AATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
23219294 ATTTTACAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
****
23219321 ATTTTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * ***
23219348 ATTCTGTAAATTGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ***
23219375 ATTCTGT-AATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
23219401 ATTTTACAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
****
23219428 ATTTTATAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * ***
23219455 ATTCTGTAAATTGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ***
23219482 ATTCTGT-AATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
23219508 ATTTTACAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
***
23219535 ATTTTATAAATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * * ***
23219562 ATTCTGTAAATTGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* * ***
23219589 ATTCTGT-AATCGAGGGTAAAATGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
* ****
23219615 ATTTTACAAATCGAGGGTAAAACGGTA
1 ATTTTATAAATCGAGGGTATTTTGGTA
23219642 ATTTTATAAATCGAGGGTA
1 ATTTTATAAATCGAGGGTA
23219661 AAACGGTAAT
Statistics
Matches: 1038, Mismatches: 115, Indels: 38
0.87 0.10 0.03
Matches are distributed among these distances:
25 1 0.00
26 185 0.18
27 842 0.81
28 10 0.01
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.32
Consensus pattern (27 bp):
ATTTTATAAATCGAGGGTATTTTGGTA
Found at i:23219661 original size:27 final size:27
Alignment explanation
Indices: 23218675--23219700 Score: 1312
Period size: 27 Copynumber: 38.3 Consensus size: 27
23218665 GGGTATTTTA
*
23218675 GTAATTTTGTAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23218702 ATAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
23218729 GTAATTTTGTAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* * * * *
23218756 ATAGTTCTATAAATCGAGGGTAAAATT
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23218783 GTAATTCTATAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23218810 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23218837 GTAATTCTGT-AATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
** *
23218863 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23218890 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23218917 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23218944 GTAATTCTGT-AATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
** *
23218970 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23218997 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219024 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23219051 GTAATTCTGT-AATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
** *
23219077 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219104 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219131 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23219158 GTAATTCTGT-AATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
** *
23219184 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219211 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219238 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23219265 GTAATTCTGT-AATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
** *
23219291 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219318 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219345 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23219372 GTAATTCTGT-AATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
** *
23219398 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219425 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219452 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23219479 GTAATTCTGT-AATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
** *
23219505 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23219532 GTAATTTTATAAATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219559 GTAATTCTGTAAATTGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
*
23219586 GTAATTCTGT-AATCGAGGGTAAAATG
1 GTAATTTTGTAAATCGAGGGTAAAATG
** *
23219612 GTAATTTTACAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* *
23219639 GTAATTTTATAAATCGAGGGTAAAACG
1 GTAATTTTGTAAATCGAGGGTAAAATG
* * **
23219666 GTAATTCTGTAAATTGAGGGTAAAACA
1 GTAATTTTGTAAATCGAGGGTAAAATG
23219693 GTAATTTT
1 GTAATTTT
23219701 ACAAATTGAG
Statistics
Matches: 897, Mismatches: 94, Indels: 16
0.89 0.09 0.02
Matches are distributed among these distances:
26 176 0.20
27 721 0.80
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.31
Consensus pattern (27 bp):
GTAATTTTGTAAATCGAGGGTAAAATG
Found at i:23219698 original size:107 final size:107
Alignment explanation
Indices: 23218675--23219690 Score: 1897
Period size: 107 Copynumber: 9.5 Consensus size: 107
23218665 GGGTATTTTA
* * * * *
23218675 GTAATTTTGTAAATCGAGGGTAAAACGATAATTTTGTAAATCGAGGGTAAAATGGTAATTTTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGT-
* * * * **
23218740 AATCGAGGGTAAAATGATAGTTCTATAAATCGAGGGTAAAATT
65 AATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
* *
23218783 GTAATTCTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
23218848 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
66 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
23218890 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
23218955 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
66 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
23218997 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
23219062 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
66 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
23219104 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
23219169 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
66 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
23219211 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
23219276 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
66 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
23219318 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
23219383 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
66 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
23219425 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
23219490 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
66 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
*
23219532 GTAATTTTATAAATCGAGGGTAAAATGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
23219597 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
66 ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
23219639 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAA
1 GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAA
23219691 CAGTAATTTT
Statistics
Matches: 891, Mismatches: 17, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
107 834 0.94
108 57 0.06
ACGTcount: A:0.38, C:0.07, G:0.24, T:0.30
Consensus pattern (107 bp):
GTAATTTTATAAATCGAGGGTAAAACGGTAATTCTGTAAATTGAGGGTAAAATGGTAATTCTGTA
ATCGAGGGTAAAATGGTAATTTTACAAATCGAGGGTAAAACG
Found at i:23227114 original size:22 final size:22
Alignment explanation
Indices: 23227089--23227133 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
23227079 TTCATACGAG
23227089 AATGCCAAAATGTATAAAGAAA
1 AATGCCAAAATGTATAAAGAAA
23227111 AATGCCAAAATGTATAAAGAAA
1 AATGCCAAAATGTATAAAGAAA
23227133 A
1 A
23227134 GTTTAAAAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.18
Consensus pattern (22 bp):
AATGCCAAAATGTATAAAGAAA
Found at i:23233676 original size:46 final size:46
Alignment explanation
Indices: 23233523--23233688 Score: 165
Period size: 46 Copynumber: 3.6 Consensus size: 46
23233513 TTTGTGTGCT
** * * *
23233523 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCAATATGAGAGCC
* * * ** * * *
23233569 AGTGGAAGACCATGTCTGGGACATGGCAATGGCATTGAGACGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCAATATGAGAGCC
*
23233617 AGTGTAAGACATGTCTGAGACATGCATTGGCCTCAATATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATTGGCCTCAATATG-AGAGCC
23233663 AGTGTAAGACATGTCT-GGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
23233689 CAGCTACGAG
Statistics
Matches: 94, Mismatches: 23, Indels: 7
0.76 0.19 0.06
Matches are distributed among these distances:
45 9 0.10
46 38 0.40
47 28 0.30
48 19 0.20
ACGTcount: A:0.31, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATTGGCCTCAATATGAGAGCC
Found at i:23236463 original size:40 final size:39
Alignment explanation
Indices: 23236419--23236523 Score: 122
Period size: 39 Copynumber: 2.6 Consensus size: 39
23236409 AGTGACCATA
*
23236419 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
23236459 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
23236497 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGACTAAG-CCCGAAGGCATTTG
23236524 AACGAGGAGC
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.55
40 24 0.41
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:23236480 original size:39 final size:40
Alignment explanation
Indices: 23236379--23236523 Score: 165
Period size: 40 Copynumber: 3.6 Consensus size: 40
23236369 TTGAATGATG
* *
23236379 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATA
*
23236419 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-A
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA
*
23236458 TTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
* *
23236498 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23236524 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 7, Indels: 14
0.81 0.06 0.12
Matches are distributed among these distances:
39 34 0.37
40 46 0.51
41 10 0.11
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA
Found at i:23236537 original size:40 final size:39
Alignment explanation
Indices: 23236380--23236542 Score: 100
Period size: 40 Copynumber: 4.1 Consensus size: 39
23236370 TGAATGATGT
** * * *
23236380 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTATAA
* * ** *
23236420 CCGGACTAAGATCCGAAGGCATTTGTGCGAGAT-ACTA-ATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAG-TGACTATA-A
** *
23236460 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATAA
* *
23236499 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATAT
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTATAA
23236539 CCGG
1 CCGG
23236543 TTAAATTCCG
Statistics
Matches: 103, Mismatches: 13, Indels: 14
0.79 0.10 0.11
Matches are distributed among these distances:
38 1 0.01
39 34 0.33
40 60 0.58
41 8 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.23
Consensus pattern (39 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTATAA
Found at i:23236542 original size:79 final size:80
Alignment explanation
Indices: 23236379--23236529 Score: 191
Period size: 79 Copynumber: 1.9 Consensus size: 80
23236369 TTGAATGATG
*
23236379 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
23236444 GTGCGAGATACTAAT
66 GAACGAGATACTAAT
* * * * *
23236459 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
23236521 TTGAACGAG
64 TTGAACGAG
23236530 GAGCTATATC
Statistics
Matches: 61, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
78 1 0.02
79 42 0.69
80 18 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGATACTAAT
Found at i:23244328 original size:39 final size:40
Alignment explanation
Indices: 23244233--23244494 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
23244223 TTGAATGATG
*
23244233 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
23244271 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
23244312 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
23244351 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
23244390 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
23244429 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
23244468 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
23244495 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:23250900 original size:40 final size:40
Alignment explanation
Indices: 23250751--23250927 Score: 204
Period size: 40 Copynumber: 4.5 Consensus size: 40
23250741 CGGATGATAA
* *
23250751 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
* *
23250791 TCGGGCTAA-TCCCGAAGGCGA-TTGTGTGAGTTA-TCATAT
1 CCGGGCTAAGTCCCGAAGGC-ATTTGTGCGAGTTACT-ATAT
*
23250830 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
23250870 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
**
23250910 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
23250928 TACTTGGTTT
Statistics
Matches: 119, Mismatches: 11, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
38 1 0.01
39 46 0.39
40 71 0.60
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Done.