Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 73 of 322
Found at i:23250916 original size:79 final size:79
Alignment explanation
Indices: 23250751--23250927 Score: 209
Period size: 79 Copynumber: 2.2 Consensus size: 79
23250741 CGGATGATAA
* ** *
23250751 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTTCGGGCTAATCCCGAAGGCGATTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAATCCCGAAGGCGATTGA
* *
23250816 GTGAGTTATCATAT
66 GCGAGTTAGCATAT
*
23250830 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGC-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAA-TCCCGAAGGCGA-T
23250893 TGAGCGAG-TAGCTATAT
63 TGAGCGAGTTAGC-ATAT
**
23250910 CC-GGCTAAACCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
23250928 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
78 2 0.02
79 60 0.71
80 23 0.27
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAATCCCGAAGGCGATTGA
GCGAGTTAGCATAT
Found at i:23258926 original size:39 final size:40
Alignment explanation
Indices: 23258790--23258926 Score: 217
Period size: 40 Copynumber: 3.5 Consensus size: 40
23258780 GGATTGATAA
23258790 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
23258829 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
23258869 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
*
23258909 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
23258927 TACTTGGTTT
Statistics
Matches: 92, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
39 27 0.29
40 65 0.71
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.23
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:23264221 original size:108 final size:108
Alignment explanation
Indices: 23264041--23264256 Score: 405
Period size: 108 Copynumber: 2.0 Consensus size: 108
23264031 ATTGTCAGCA
* *
23264041 AGTAAGAAGGATGCGATTTGGGTTGTTGTTGATAGACTGACTAAGTCGGCTCATTTTATTCCCGT
1 AGTAAGAAAGATGCGATTTGGGTTGTTGTTGATAGACTGACTAAGTCGGCTCATTTTATTCCCAT
23264106 ACATACGGATTATTCACTGGATAAACTAGTTGAATTGTATGTT
66 ACATACGGATTATTCACTGGATAAACTAGTTGAATTGTATGTT
23264149 AGTAAGAAAGATGCGATTTGGGTTGTTGTTGATAGACTGACTAAGTCGGCTCATTTTATTCCCAT
1 AGTAAGAAAGATGCGATTTGGGTTGTTGTTGATAGACTGACTAAGTCGGCTCATTTTATTCCCAT
*
23264214 ACGTACGGATTATTCACTGGATAAACTAGTTGAATTGTATGTT
66 ACATACGGATTATTCACTGGATAAACTAGTTGAATTGTATGTT
23264257 TCTCAGATTG
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 105 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (108 bp):
AGTAAGAAAGATGCGATTTGGGTTGTTGTTGATAGACTGACTAAGTCGGCTCATTTTATTCCCAT
ACATACGGATTATTCACTGGATAAACTAGTTGAATTGTATGTT
Found at i:23267001 original size:40 final size:41
Alignment explanation
Indices: 23266896--23267062 Score: 195
Period size: 40 Copynumber: 4.2 Consensus size: 41
23266886 CGGATGATAA
* * *
23266896 CCGGGCTAAGTCCCGAAGGTATTTGTGCTAGTGA-CTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATCTATA-T
* * *
23266936 CTGGGCTAAG-CCCGAAGCCAATTGTGCGAGTTATC-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATCTATAT
*
23266975 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATCTATAT
* *
23267015 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATCTATAT
23267055 CC-GGCTAA
1 CCGGGCTAA
23267063 ACCTCGAAGG
Statistics
Matches: 110, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 38 0.35
40 72 0.65
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATCTATAT
Found at i:23267061 original size:79 final size:79
Alignment explanation
Indices: 23266896--23267062 Score: 205
Period size: 79 Copynumber: 2.1 Consensus size: 79
23266886 CGGATGATAA
* * * * *
23266896 CCGGGCTAAGTCCCGAAGGTATTTGTGCTAGTGACTAATTCTGGGCTAAGCCCGAAGCCAATTGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGCCAATTGA
*
23266961 GCGAGTTATCATAT
66 GCGAGTTAGCATAT
* * *
23266975 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCGAAGCCAATT
23267039 GAGCGAG-TAGCTATAT
64 GAGCGAGTTAGC-ATAT
23267055 CC-GGCTAA
1 CCGGGCTAA
23267063 ACCTCGAAGG
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 51 0.67
80 23 0.30
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGCCCGAAGCCAATTGA
GCGAGTTAGCATAT
Found at i:23274597 original size:40 final size:40
Alignment explanation
Indices: 23274488--23275418 Score: 1701
Period size: 40 Copynumber: 23.3 Consensus size: 40
23274478 TATTCGGATG
* *
23274488 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
** *
23274528 A-ATTTCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA-T
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* **
23274566 CATATCCGGGCTAAGTATCGAAGGCATTTGTGCGAGTTACT
1 -ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274607 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274647 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274687 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274727 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274767 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274807 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274847 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274887 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274927 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23274967 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23275007 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23275047 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23275087 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23275127 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23275167 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23275207 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23275247 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23275287 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
23275327 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
23275367 ATAACCGGGCTAAGTCCCGAAGGTATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
*
23275407 ATATCC-GGCTAA
1 ATAACCGGGCTAA
23275419 ACCTCGAAGG
Statistics
Matches: 870, Mismatches: 15, Indels: 13
0.97 0.02 0.01
Matches are distributed among these distances:
38 1 0.00
39 40 0.05
40 828 0.95
41 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:23282816 original size:24 final size:24
Alignment explanation
Indices: 23282789--23282886 Score: 142
Period size: 24 Copynumber: 4.0 Consensus size: 24
23282779 AAGGCTGTCA
23282789 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
*
23282813 GGAGAGGATTTAGGAGCTGATAAG
1 GGAGAAGATTTAGGAGCTGATAAG
* * *
23282837 GGAGAGGATTTAGGAGCTAATAAA
1 GGAGAAGATTTAGGAGCTGATAAG
*
23282861 GGAGAATATTTAGGAGCTGATCAAG
1 GGAGAAGATTTAGGAGCTGAT-AAG
23282886 G
1 G
23282887 AGCAGAAGTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
24 63 0.95
25 3 0.05
ACGTcount: A:0.37, C:0.05, G:0.37, T:0.21
Consensus pattern (24 bp):
GGAGAAGATTTAGGAGCTGATAAG
Found at i:23290752 original size:12 final size:12
Alignment explanation
Indices: 23290735--23290830 Score: 52
Period size: 12 Copynumber: 8.0 Consensus size: 12
23290725 TGAAAGGCTG
*
23290735 TTAGGAGAAGAT
1 TTAGGAGATGAT
*
23290747 TTAGGAGCTGA-
1 TTAGGAGATGAT
* *
23290758 TAAGGAAGAGGAT
1 TTAGG-AGATGAT
*
23290771 TTAGGAGCTGA-
1 TTAGGAGATGAT
* *
23290782 TAAGGGAGAGGAT
1 TTA-GGAGATGAT
*
23290795 TTAGGAGCTGAT
1 TTAGGAGATGAT
** *
23290807 AAAGGAGAAGAT
1 TTAGGAGATGAT
*
23290819 TTAGGAGCTGAT
1 TTAGGAGATGAT
23290831 CAAGGAGCAG
Statistics
Matches: 58, Mismatches: 22, Indels: 8
0.66 0.25 0.09
Matches are distributed among these distances:
11 6 0.10
12 46 0.79
13 6 0.10
ACGTcount: A:0.36, C:0.04, G:0.36, T:0.23
Consensus pattern (12 bp):
TTAGGAGATGAT
Found at i:23290837 original size:24 final size:23
Alignment explanation
Indices: 23290737--23290837 Score: 148
Period size: 24 Copynumber: 4.2 Consensus size: 23
23290727 AAAGGCTGTT
23290737 AGGAGAAGATTTAGGAGCTGATA
1 AGGAGAAGATTTAGGAGCTGATA
*
23290760 AGGAAGAGGATTTAGGAGCTGATA
1 AGG-AGAAGATTTAGGAGCTGATA
*
23290784 AGGGAGAGGATTTAGGAGCTGATAA
1 A-GGAGAAGATTTAGGAGCTGAT-A
23290809 AGGAGAAGATTTAGGAGCTGATCA
1 AGGAGAAGATTTAGGAGCTGAT-A
23290833 AGGAG
1 AGGAG
23290838 CAGGAGTTGG
Statistics
Matches: 72, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
23 3 0.04
24 65 0.90
25 4 0.06
ACGTcount: A:0.38, C:0.05, G:0.38, T:0.20
Consensus pattern (23 bp):
AGGAGAAGATTTAGGAGCTGATA
Found at i:23299225 original size:47 final size:47
Alignment explanation
Indices: 23299170--23299353 Score: 305
Period size: 47 Copynumber: 3.9 Consensus size: 47
23299160 TTTAGGATTT
** * * *
23299170 TATGTGATGAATGTGAATGTGTATATATGTGAAAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
* *
23299217 AATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
23299264 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
1 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
23299311 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAAT
1 TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAAT
23299354 TGCTGTGATA
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 130 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (47 bp):
TATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCC
Found at i:23299246 original size:25 final size:25
Alignment explanation
Indices: 23299218--23299343 Score: 74
Period size: 25 Copynumber: 5.3 Consensus size: 25
23299208 CGAATGGCCA
23299218 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * *
23299243 ATGTGAT-AAGGCCG-A-ATGGC--CT
1 ATGTGATGAATG-TGAACAT-GCATAT
23299265 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
* * * *
23299290 ACGTGAT-AAGGCCG-A-ATGGC--CT
1 ATGTGATGAATG-TGAACAT-GCATAT
23299312 ATGTGATGAATGTGAACATGCATAT
1 ATGTGATGAATGTGAACATGCATAT
*
23299337 ACGTGAT
1 ATGTGAT
23299344 AAGGCCGAAT
Statistics
Matches: 72, Mismatches: 15, Indels: 28
0.63 0.13 0.24
Matches are distributed among these distances:
22 17 0.24
23 16 0.22
24 16 0.22
25 23 0.32
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.28
Consensus pattern (25 bp):
ATGTGATGAATGTGAACATGCATAT
Found at i:23299270 original size:22 final size:22
Alignment explanation
Indices: 23299242--23299318 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
23299232 AACATGCATA
23299242 TATGTGATAAGGCCGAATGGCC
1 TATGTGATAAGGCCGAATGGCC
* * *
23299264 TATGTGATGAATG-TGAACAT-GCA
1 TATGTGAT-AAGGCCG-A-ATGGCC
23299287 TATACGTGATAAGGCCGAATGGCC
1 TAT--GTGATAAGGCCGAATGGCC
23299311 TATGTGAT
1 TATGTGAT
23299319 GAATGTGAAC
Statistics
Matches: 42, Mismatches: 6, Indels: 14
0.68 0.10 0.23
Matches are distributed among these distances:
22 14 0.33
23 11 0.26
24 11 0.26
25 6 0.14
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (22 bp):
TATGTGATAAGGCCGAATGGCC
Found at i:23299373 original size:66 final size:66
Alignment explanation
Indices: 23299292--23299417 Score: 198
Period size: 66 Copynumber: 1.9 Consensus size: 66
23299282 ATGCATATAC
* * *
23299292 GTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATTGC
1 GTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATTGC
23299357 T
66 T
* **
23299358 GTGATAAGGCAGAATGGCCAATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGA
1 GTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGA
23299418 GTGGCCAATG
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 54 1.00
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (66 bp):
GTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATTGC
T
Found at i:23299382 original size:113 final size:113
Alignment explanation
Indices: 23299244--23299466 Score: 329
Period size: 113 Copynumber: 2.0 Consensus size: 113
23299234 CATGCATATA
* * *
23299244 TGTGATAAGGCCGAATGGCCTATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATGG
1 TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATGG
* * *
23299309 CCTATGTGATGAATGTGAACATGCATATACGTGATAAGGCCGAATTGC
66 CCAATGTGATGAATATGAACATGCATATACGTGATAAAGCCGAATTGC
* ** *
23299357 TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAGTGG
1 TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATGG
* * *
23299422 CCAATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAAT
66 CCAATGTGATGAATATGAACATGCATATACGTGATAAAGCCGAAT
23299467 GGCTAGTGTG
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
113 97 1.00
ACGTcount: A:0.31, C:0.14, G:0.30, T:0.25
Consensus pattern (113 bp):
TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAACATGCATATACGTGATAAGGCCGAATGG
CCAATGTGATGAATATGAACATGCATATACGTGATAAAGCCGAATTGC
Found at i:23299414 original size:47 final size:47
Alignment explanation
Indices: 23299357--23299469 Score: 145
Period size: 47 Copynumber: 2.4 Consensus size: 47
23299347 GCCGAATTGC
* * * *
23299357 TGTGATAAGGCAGAATGGCCAATGTGATGAACGTGAGCATGCATATG
1 TGTGATAAGGCCGAATGGCCAATGTGATGAACATGAACATGCATATA
* * *
23299404 TGTGATAAGGCCGAGTGGCCAATGTGGTGAATATGAACATGCATATA
1 TGTGATAAGGCCGAATGGCCAATGTGATGAACATGAACATGCATATA
* *
23299451 TGTGGTAAAGCCGAATGGC
1 TGTGATAAGGCCGAATGGC
23299470 TAGTGTGAAA
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.31, C:0.13, G:0.32, T:0.24
Consensus pattern (47 bp):
TGTGATAAGGCCGAATGGCCAATGTGATGAACATGAACATGCATATA
Found at i:23299734 original size:37 final size:37
Alignment explanation
Indices: 23299640--23299740 Score: 148
Period size: 37 Copynumber: 2.7 Consensus size: 37
23299630 ATTCCGCGTG
* * * *
23299640 AGACTCGATGACTACGTGTGAAGAGTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
23299677 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
* *
23299714 AGACCCGATAACTTCGTGTGGAGATTT
1 AGACCCGATGACTACGTGTGGAGATTT
23299741 CGTCTGAGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
Found at i:23299797 original size:37 final size:37
Alignment explanation
Indices: 23299747--23299822 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
23299737 ATTTCGTCTG
*
23299747 AGCTAAAGGTCTCCCCGATAATCCGGGTAGAGGTTAA
1 AGCTAAAGGTCTCCCCGATAATCCGAGTAGAGGTTAA
23299784 AGCTAAAGGTCTCCCCGATAATCCGAGTAGAGGTTAA
1 AGCTAAAGGTCTCCCCGATAATCCGAGTAGAGGTTAA
23299821 AG
1 AG
23299823 ATATAAGACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (37 bp):
AGCTAAAGGTCTCCCCGATAATCCGAGTAGAGGTTAA
Found at i:23301318 original size:40 final size:40
Alignment explanation
Indices: 23301009--23301306 Score: 488
Period size: 40 Copynumber: 7.5 Consensus size: 40
23300999 GAGAATTGAG
* *
23301009 AGTGATATATCCGGGCTAAATCCTGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
23301049 AGTGATATATCCGGGCTAAATCCCGAAGAACATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
23301089 AGTGATGTATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* **
23301129 AGTGATATATCCAGGCTAAATCCCGAAGAGCATTTTTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
23301169 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * * *
23301209 AGTGATGTATCCGGACTAAGTCCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
23301249 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
*
23301289 AGTGATGTATCCGGGCTA
1 AGTGATATATCCGGGCTA
23301307 GGTCCTGAAG
Statistics
Matches: 237, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 237 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:23305371 original size:312 final size:312
Alignment explanation
Indices: 23304806--23305429 Score: 1239
Period size: 312 Copynumber: 2.0 Consensus size: 312
23304796 CTTGTTTTAG
23304806 TTGCTCATAAGCTATTGATTAAACCCATACGTGAATTCTAAATCGTGATATTGTAAAACGGTATA
1 TTGCTCATAAGCTATTGATTAAACCCATACGTGAATTCTAAATCGTGATATTGTAAAACGGTATA
23304871 TGAGTGTTAGACGGATCTTCGATATTAAAATTTGTGAAATTGTAAGTTTATGAGTATTCGAATAT
66 TGAGTGTTAGACGGATCTTCGATATTAAAATTTGTGAAATTGTAAGTTTATGAGTATTCGAATAT
23304936 GAAATGATAGTATGGCGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTCGGCCAAG
131 GAAATGATAGTATGGCGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTCGGCCAAG
23305001 ACAAAGTGTATACATGATAGTATATGTGGTATGTGAAGTATATTTGGATAATTGTGATGGGAATA
196 ACAAAGTGTATACATGATAGTATATGTGGTATGTGAAGTATATTTGGATAATTGTGATGGGAATA
23305066 CATGAAAATTTATATTTTGATCTAGGATTTTATGTGATGAATGTGAATGTGT
261 CATGAAAATTTATATTTTGATCTAGGATTTTATGTGATGAATGTGAATGTGT
23305118 TTGCTCATAAGCTATTGATTAAACCCATACGTGAATTCTAAATCGTGATATTGTAAAACGGTATA
1 TTGCTCATAAGCTATTGATTAAACCCATACGTGAATTCTAAATCGTGATATTGTAAAACGGTATA
23305183 TGAGTGTTAGACGGATCTTCGATATTAAAATTTGTGAAATTGTAAGTTTATGAGTATTCGAATAT
66 TGAGTGTTAGACGGATCTTCGATATTAAAATTTGTGAAATTGTAAGTTTATGAGTATTCGAATAT
23305248 GAAATGATAGTATGGCGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTCGGCCAAG
131 GAAATGATAGTATGGCGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTCGGCCAAG
23305313 ACAAAGTGTATACATGATAGTATATGTGGTATGTGAAGTATATTTGGATAATTGTGATGGGAATA
196 ACAAAGTGTATACATGATAGTATATGTGGTATGTGAAGTATATTTGGATAATTGTGATGGGAATA
*
23305378 CATGAAAATTTATATTTTGATTTAGGATTTTATGTGATGAATGTGAATGTGT
261 CATGAAAATTTATATTTTGATCTAGGATTTTATGTGATGAATGTGAATGTGT
23305430 ATATATGTGA
Statistics
Matches: 311, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
312 311 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (312 bp):
TTGCTCATAAGCTATTGATTAAACCCATACGTGAATTCTAAATCGTGATATTGTAAAACGGTATA
TGAGTGTTAGACGGATCTTCGATATTAAAATTTGTGAAATTGTAAGTTTATGAGTATTCGAATAT
GAAATGATAGTATGGCGTGAAATTGAATTATTCATTGGAAAATGATTGATGTAGATTCGGCCAAG
ACAAAGTGTATACATGATAGTATATGTGGTATGTGAAGTATATTTGGATAATTGTGATGGGAATA
CATGAAAATTTATATTTTGATCTAGGATTTTATGTGATGAATGTGAATGTGT
Found at i:23305463 original size:47 final size:47
Alignment explanation
Indices: 23305409--23305735 Score: 537
Period size: 47 Copynumber: 7.0 Consensus size: 47
23305399 TTAGGATTTT
** *
23305409 ATGTGATGAATGTGAATGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
23305456 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCAAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
23305503 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
*
23305550 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCT
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
23305597 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
23305644 ATGTGATGAACGTGAGCATGCATATGTGTGATAAGGCCGAGTGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * *
23305691 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGC
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGC
23305736 TAGTGTGAAA
Statistics
Matches: 261, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 261 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:23306004 original size:37 final size:37
Alignment explanation
Indices: 23305906--23306006 Score: 166
Period size: 37 Copynumber: 2.7 Consensus size: 37
23305896 ATTTCGCGTG
* *
23305906 AGACCCGATGACTACGTGTGGAGAGTATGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
23305943 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
1 AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
* *
23305980 AGACCCGATAACTTCGTGTGGAGATTT
1 AGACCCGATGACTACGTGTGGAGATTT
23306007 CGTCTGAGCT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 60 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
AGACCCGATGACTACGTGTGGAGATTTTGTCCGGGTA
Found at i:23307494 original size:28 final size:29
Alignment explanation
Indices: 23307441--23307498 Score: 91
Period size: 28 Copynumber: 2.0 Consensus size: 29
23307431 GTGAGCATGA
*
23307441 ATATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
*
23307470 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATATGATTTGGGCCTAATGGGCC
23307498 A
1 A
23307499 GATACAGGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 16 0.59
29 11 0.41
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (29 bp):
ATATGAATATGATTTGGGCCTAATGGGCC
Found at i:23308467 original size:28 final size:29
Alignment explanation
Indices: 23308354--23308468 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
23308344 GTGAGCATGA
* *
23308354 ATATGAATGCGA-TTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
23308382 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
23308411 ATAT-ACATGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* * *
23308440 ATATGAATATGA-TTGGGCTTAATAGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
23308468 A
1 A
23308469 GATACAGGTA
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
28 26 0.33
29 51 0.65
30 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:23312932 original size:40 final size:40
Alignment explanation
Indices: 23312885--23313107 Score: 333
Period size: 40 Copynumber: 5.6 Consensus size: 40
23312875 CTACTCGCTC
* *
23312885 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACC
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
*
23312925 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCACACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
* * *
23312965 AATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
* *
23313005 AATGCCTTTGGGACTTAGCCCGGATATAGTAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
*
23313045 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCACA
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACA
23313085 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
23313108 TTATCATCCG
Statistics
Matches: 168, Mismatches: 13, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 167 0.99
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.22
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACA
Found at i:23315125 original size:28 final size:28
Alignment explanation
Indices: 23315094--23315148 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
23315084 AGTCGAAAAC
23315094 CCTTTTGTTTTTCTTTATTTTCTTCCTT
1 CCTTTTGTTTTTCTTTATTTTCTTCCTT
*
23315122 CCTTTTGTTTTTCTTTCTTTTCTTCCT
1 CCTTTTGTTTTTCTTTATTTTCTTCCT
23315149 GCTGATTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.02, C:0.24, G:0.04, T:0.71
Consensus pattern (28 bp):
CCTTTTGTTTTTCTTTATTTTCTTCCTT
Found at i:23316092 original size:29 final size:28
Alignment explanation
Indices: 23316037--23316116 Score: 106
Period size: 29 Copynumber: 2.8 Consensus size: 28
23316027 GTGAGCATGA
* *
23316037 ATATGAATGTGACTGGGCCTAACGGGCC
1 ATATGAATGTGATTGGGCCTAATGGGCC
*
23316065 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGA-TTGGGCCTAATGGGCC
* *
23316094 ATATGAATATGATTGGGCTTAAT
1 ATATGAATGTGATTGGGCCTAAT
23316117 AGGCGAGATA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 21 0.47
29 24 0.53
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.30
Consensus pattern (28 bp):
ATATGAATGTGATTGGGCCTAATGGGCC
Found at i:23316440 original size:26 final size:26
Alignment explanation
Indices: 23316406--23316457 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
23316396 ATCCATATCT
23316406 AGGGAAAATT-ACCGAAATACCCCTA
1 AGGGAAAATTGACCGAAATACCCCTA
* *
23316431 AGGGAGAAATTGATCGAATTACCCCTA
1 AGGGA-AAATTGACCGAAATACCCCTA
23316458 GGTGTCAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 5 0.22
26 5 0.22
27 13 0.57
ACGTcount: A:0.40, C:0.21, G:0.19, T:0.19
Consensus pattern (26 bp):
AGGGAAAATTGACCGAAATACCCCTA
Found at i:23319097 original size:16 final size:17
Alignment explanation
Indices: 23319076--23319111 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
23319066 GTAATGCCCT
*
23319076 AAAAATCTCGAAA-CCC
1 AAAAATCCCGAAATCCC
23319092 AAAAATCCCGAAATCCC
1 AAAAATCCCGAAATCCC
23319109 AAA
1 AAA
23319112 CTTTTTTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 12 0.67
17 6 0.33
ACGTcount: A:0.53, C:0.31, G:0.06, T:0.11
Consensus pattern (17 bp):
AAAAATCCCGAAATCCC
Found at i:23320739 original size:28 final size:29
Alignment explanation
Indices: 23320629--23320743 Score: 146
Period size: 29 Copynumber: 4.0 Consensus size: 29
23320619 GTGAGAATGA
* *
23320629 ATATGAATGTGA-CTGGGCCTAACGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
23320657 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
*
23320686 ATAT-ACAGGTGATTTGGGCCTAATGGGCC
1 ATATGA-ATGTGATTTGGGCCTAATGGGCC
* *
23320715 ATATGAATATGA-TTGGGCTTAATGGGCC
1 ATATGAATGTGATTTGGGCCTAATGGGCC
23320743 A
1 A
23320744 GATACATGTA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
28 28 0.36
29 48 0.62
30 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
ATATGAATGTGATTTGGGCCTAATGGGCC
Found at i:23326684 original size:19 final size:19
Alignment explanation
Indices: 23326662--23326723 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 19
23326652 TTGATATAAG
23326662 ATATGTGATACAATATGAT
1 ATATGTGATACAATATGAT
* *
23326681 ATATTTGAT---ATA--AG
1 ATATGTGATACAATATGAT
23326695 ATATGTGATACAATATGAT
1 ATATGTGATACAATATGAT
*
23326714 ATATTTGATA
1 ATATGTGATA
23326724 TGTTTTAGTT
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
14 9 0.27
16 3 0.09
17 3 0.09
19 18 0.55
ACGTcount: A:0.42, C:0.03, G:0.15, T:0.40
Consensus pattern (19 bp):
ATATGTGATACAATATGAT
Found at i:23326684 original size:33 final size:33
Alignment explanation
Indices: 23326646--23326724 Score: 158
Period size: 33 Copynumber: 2.4 Consensus size: 33
23326636 TTTGTGATGT
23326646 ATATATTTGATATAAGATATGTGATACAATATG
1 ATATATTTGATATAAGATATGTGATACAATATG
23326679 ATATATTTGATATAAGATATGTGATACAATATG
1 ATATATTTGATATAAGATATGTGATACAATATG
23326712 ATATATTTGATAT
1 ATATATTTGATAT
23326725 GTTTTAGTTG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.42, C:0.03, G:0.14, T:0.42
Consensus pattern (33 bp):
ATATATTTGATATAAGATATGTGATACAATATG
Found at i:23338095 original size:79 final size:81
Alignment explanation
Indices: 23337986--23338168 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
23337976 TACTCGTTCA
* *
23337986 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
23338049 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
23338066 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
23338129 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
23338145 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
23338169 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:23338168 original size:40 final size:40
Alignment explanation
Indices: 23337965--23338168 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
23337955 CGGAATTTAA
** *
23337965 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23338005 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23338045 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
23338084 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
23338124 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
23338164 CCGGA
1 CCGGA
23338169 CATCATTCGA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 93 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:23339545 original size:40 final size:40
Alignment explanation
Indices: 23339514--23339805 Score: 403
Period size: 40 Copynumber: 7.3 Consensus size: 40
23339504 GGACTAAGAT
23339514 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
23339554 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
23339594 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
23339634 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
* *
23339674 CCGAAGGCCTTTGTGCGAGATACTAAA-TCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
* * * * * *
23339714 CCGAAGGCATTCGTGTGAGTTATTAAA-TCCGGGTTATGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
* * * * * *
23339754 CCGAAGGCA-TTGTGTGAGTTACTAAA-ACCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCC
23339793 CCGAAGGCATTTG
1 CCGAAGGCATTTG
23339806 AACGAGGAGC
Statistics
Matches: 236, Mismatches: 12, Indels: 8
0.92 0.05 0.03
Matches are distributed among these distances:
39 34 0.14
40 199 0.84
41 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
Found at i:23341409 original size:47 final size:47
Alignment explanation
Indices: 23341278--23341426 Score: 192
Period size: 47 Copynumber: 3.2 Consensus size: 47
23341268 GTGTTACATA
* * * *
23341278 TAAGACCATAGCTGGGCTATGGCATTGGTGTGATATGAGCTTCCGTA
1 TAAGACCATATCTGGGATATGGCATTGGTGTGATATGTGCTTCCGTG
* * * *
23341325 TAAAACCATATCTGGGATATGACATCGGTGTGATATGTGCTTCTGTG
1 TAAGACCATATCTGGGATATGGCATTGGTGTGATATGTGCTTCCGTG
* **
23341372 TAAGACCATATCTGGGATATGGCATTAGTGTGATATGT-AATCCGTG
1 TAAGACCATATCTGGGATATGGCATTGGTGTGATATGTGCTTCCGTG
23341418 TAAGACCAT
1 TAAGACCAT
23341427 GGCTGAGCTA
Statistics
Matches: 87, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
46 14 0.16
47 73 0.84
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.32
Consensus pattern (47 bp):
TAAGACCATATCTGGGATATGGCATTGGTGTGATATGTGCTTCCGTG
Found at i:23343755 original size:13 final size:13
Alignment explanation
Indices: 23343737--23343761 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23343727 AAGTGTTCAA
23343737 TGGAAAATTACTT
1 TGGAAAATTACTT
23343750 TGGAAAATTACT
1 TGGAAAATTACT
23343762 AGAAATTATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
TGGAAAATTACTT
Found at i:23347873 original size:138 final size:131
Alignment explanation
Indices: 23347630--23347894 Score: 316
Period size: 138 Copynumber: 2.0 Consensus size: 131
23347620 TACTGAACTT
* *** *
23347630 GAAAATTGGACCTGAGATCAAAAGTTGGAACCGAGAACCAAAAATTAAGATTGAGACTCAAAATT
1 GAAAATTGGACCTGAGATCAAAAGTTGGAACCGAGAACCAAAAATCAAGACCAAGACCCAAAATT
* * *
23347695 AGTATAACTGGGCTCGGTATGTGAAACCAGGCTGACGGTCCAACTAGTAGTTGGACTAGCCCGAT
66 AGTAGAACGGGGCTCAGTATGTGAAACCAGGCTGACGGTCCAACTAGTAGTTGGACTAGCCCGAT
23347760 C
131 C
* *
23347761 GAAAATTGGACTTGAGATCAAAAGTTGGAACCAAGAACCAAGAACCAAAAATCAAGACCAATACC
1 GAAAATTGGACCTGAGATCAAAAGTTGGAACC--G-----AGAACCAAAAATCAAGACCAAGACC
* * * * *
23347826 CAAAATTGGTCGAACGGGGCTCAGTATGTGAAACC-GAGCTGATGGTCCAACTGGTGGTTGGACT
59 CAAAATTAGTAGAACGGGGCTCAGTATGTGAAACCAG-GCTGACGGTCCAACTAGTAGTTGGACT
23347890 AGCCC
123 AGCCC
23347895 AATTGGGCCA
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
131 31 0.28
133 1 0.01
137 1 0.01
138 78 0.70
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (131 bp):
GAAAATTGGACCTGAGATCAAAAGTTGGAACCGAGAACCAAAAATCAAGACCAAGACCCAAAATT
AGTAGAACGGGGCTCAGTATGTGAAACCAGGCTGACGGTCCAACTAGTAGTTGGACTAGCCCGAT
C
Found at i:23348181 original size:17 final size:17
Alignment explanation
Indices: 23348164--23348196 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
23348154 ATAATATTAT
23348164 TTTAA-TAAATTTAATA
1 TTTAATTAAATTTAATA
*
23348180 TTTAATTTAATTTAATA
1 TTTAATTAAATTTAATA
23348197 CTTATCTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TTTAATTAAATTTAATA
Found at i:23348312 original size:61 final size:58
Alignment explanation
Indices: 23348243--23348357 Score: 151
Period size: 61 Copynumber: 1.9 Consensus size: 58
23348233 GTGATTATCA
* *
23348243 TAATATTAAATTAAAT-TAAATATTTATCTTTTAGATAAATATTCTATTAATTTAATAGATT
1 TAATATTAAATTAAATCT-AATACTTATC--TT-GATAAATATTATATTAATTTAATAGATT
* *
23348304 TAATATTAAATTTAATCTAATACTTATCTTGATAAGTATTATATTAATTTAATA
1 TAATATTAAATTAAATCTAATACTTATCTTGATAAATATTATATTAATTTAATA
23348358 TTAAAGTGAT
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
58 22 0.45
59 2 0.04
61 24 0.49
62 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.03, T:0.49
Consensus pattern (58 bp):
TAATATTAAATTAAATCTAATACTTATCTTGATAAATATTATATTAATTTAATAGATT
Found at i:23351663 original size:34 final size:34
Alignment explanation
Indices: 23351623--23351699 Score: 138
Period size: 34 Copynumber: 2.3 Consensus size: 34
23351613 GCTTGAAGCA
23351623 TTTCTCTAGTCCTCTCTAACCTAGCCTCGAAA-AC
1 TTTCTCTAGTCCTCTCTAACCTAGCCTC-AAACAC
23351657 TTTCTCTAGTCCTCTCTAACCTAGCCTCAAACAC
1 TTTCTCTAGTCCTCTCTAACCTAGCCTCAAACAC
23351691 TTTCTCTAG
1 TTTCTCTAG
23351700 CACTTCCCTC
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 3 0.07
34 39 0.93
ACGTcount: A:0.22, C:0.35, G:0.08, T:0.35
Consensus pattern (34 bp):
TTTCTCTAGTCCTCTCTAACCTAGCCTCAAACAC
Found at i:23359237 original size:27 final size:26
Alignment explanation
Indices: 23359206--23359383 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
23359196 TAAATTGTAC
23359206 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
23359233 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
23359259 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
23359287 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
23359315 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
23359342 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
23359369 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23359384 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:23359322 original size:82 final size:81
Alignment explanation
Indices: 23359207--23359362 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
23359197 AAATTGTACA
* *
23359207 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23359271 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
23359288 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
23359353 TGCGAGTTGA
65 TGCGAATTGA
23359363 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23359374 original size:82 final size:81
Alignment explanation
Indices: 23359203--23359383 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
23359193 GATTAAATTG
* *
23359203 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
23359268 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
23359284 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
23359348 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23359366 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23359384 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23359394 original size:27 final size:27
Alignment explanation
Indices: 23359288--23359394 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
23359278 TGACCATGCG
* * * *
23359288 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
23359316 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
23359343 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
23359370 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
23359395 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:23367299 original size:27 final size:27
Alignment explanation
Indices: 23367268--23367445 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23367258 TAAATTGTAC
23367268 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23367295 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23367321 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23367349 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23367377 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23367404 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23367431 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23367446 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23367382 original size:82 final size:81
Alignment explanation
Indices: 23367269--23367424 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23367259 AAATTGTACA
* *
23367269 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23367333 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23367350 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
23367415 TGCGAGTTGA
65 TGCGAATTGA
23367425 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23367436 original size:82 final size:81
Alignment explanation
Indices: 23367265--23367445 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
23367255 GATTAAATTG
* *
23367265 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
23367330 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23367346 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
23367410 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23367428 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23367446 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23367456 original size:27 final size:27
Alignment explanation
Indices: 23367350--23367456 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
23367340 TGACCATGCG
* * * *
23367350 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
23367378 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
23367405 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
23367432 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
23367457 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:23372434 original size:21 final size:21
Alignment explanation
Indices: 23372409--23372456 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
23372399 GGGAGGATGT
*
23372409 ACATGGCCGTGTG-GCTAAGGC
1 ACATGGCCATGTGAGCT-AGGC
* *
23372430 ACATGCCCATGTGAGCTAGGG
1 ACATGGCCATGTGAGCTAGGC
23372451 ACATGG
1 ACATGG
23372457 TTCTTTGAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 19 0.86
22 3 0.14
ACGTcount: A:0.23, C:0.23, G:0.35, T:0.19
Consensus pattern (21 bp):
ACATGGCCATGTGAGCTAGGC
Found at i:23373354 original size:22 final size:22
Alignment explanation
Indices: 23373329--23373390 Score: 74
Period size: 22 Copynumber: 2.8 Consensus size: 22
23373319 TCTTTTTTTT
23373329 AAATAAAAATAAAAATAACTAA
1 AAATAAAAATAAAAATAACTAA
*
23373351 AAAT-AAAATAAAAAATAATTAA
1 AAATAAAAAT-AAAAATAACTAA
*
23373373 AACA-AAAAATGAAAATAA
1 AA-ATAAAAATAAAAATAA
23373391 ATATTTGAAC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 5 0.14
22 24 0.69
23 6 0.17
ACGTcount: A:0.77, C:0.03, G:0.02, T:0.18
Consensus pattern (22 bp):
AAATAAAAATAAAAATAACTAA
Found at i:23377288 original size:9 final size:9
Alignment explanation
Indices: 23377276--23377333 Score: 53
Period size: 9 Copynumber: 6.1 Consensus size: 9
23377266 ATTTTATTAG
*
23377276 TTTAATGAT
1 TTTAATAAT
23377285 TTTAATTAAT
1 TTTAA-TAAT
23377295 TTATAATAAT
1 TT-TAATAAT
*
23377305 TTTAATGATT
1 TTTAAT-AAT
*
23377315 TTTTATAAT
1 TTTAATAAT
*
23377324 TTTTATAAT
1 TTTAATAAT
23377333 T
1 T
23377334 CTAGAATGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
9 21 0.50
10 18 0.43
11 3 0.07
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.60
Consensus pattern (9 bp):
TTTAATAAT
Found at i:23377323 original size:29 final size:27
Alignment explanation
Indices: 23377255--23377333 Score: 79
Period size: 29 Copynumber: 2.8 Consensus size: 27
23377245 ATACTAAATT
* *
23377255 ATTTTTTATAAATTTTATTAGTTTAATG
1 ATTTTTTAT-AATTTTATAATTTTAATG
*
23377283 A-TTTTAATTAATTTATAATAATTTTAATG
1 ATTTTTTA-TAATTT-T-ATAATTTTAATG
23377312 ATTTTTTATAATTTTTATAATT
1 ATTTTTTATAA-TTTTATAATT
23377334 CTAGAATGAA
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
27 10 0.24
28 9 0.21
29 15 0.36
30 8 0.19
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (27 bp):
ATTTTTTATAATTTTATAATTTTAATG
Found at i:23380863 original size:16 final size:16
Alignment explanation
Indices: 23380837--23380872 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
23380827 AATCACAATG
23380837 ATAACATGCGTAATAAA
1 ATAACATGCGTAA-AAA
23380854 ATAA-ATGCGTAAAAA
1 ATAACATGCGTAAAAA
23380869 ATAA
1 ATAA
23380873 TAAAAAGACA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.37
16 8 0.42
17 4 0.21
ACGTcount: A:0.58, C:0.08, G:0.11, T:0.22
Consensus pattern (16 bp):
ATAACATGCGTAAAAA
Found at i:23381216 original size:12 final size:12
Alignment explanation
Indices: 23381193--23381233 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
23381183 AAAAAAATAA
23381193 AATAATTAGTAAT
1 AATAA-TAGTAAT
23381206 AATAATAGTAAT
1 AATAATAGTAAT
* *
23381218 GATAATAATAAT
1 AATAATAGTAAT
23381230 AATA
1 AATA
23381234 CAAATAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
12 20 0.80
13 5 0.20
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (12 bp):
AATAATAGTAAT
Found at i:23383080 original size:96 final size:97
Alignment explanation
Indices: 23382863--23383081 Score: 257
Period size: 96 Copynumber: 2.3 Consensus size: 97
23382853 TTCTACTGCT
* * *
23382863 ACTTCAAAGAGATAAGATCCGTAACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATA
1 ACTTCAAGGAGATAAGATCTGCAACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATA
* * * * * **
23382928 AGATTCTCTATCTTTAGTTTGCTCCTATTGTA
66 AGATTCTCCATCTTCAGTCTACTCCTACTACA
* * * *
23382960 ACTTTAGGGAGA-AAGA-CTTGCAACTTTTAGCTTCAATCTGCTCCACTGCAACTTCAAGGAAAT
1 ACTTCAAGGAGATAAGATC-TGCAACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGAAAAT
23383023 AAGATT-TGCCATCTTCAGTCTACTCC-ACTACA
65 AAGATTCT-CCATCTTCAGTCTACTCCTACTACA
*
23383055 ACTTCAAGGAGATAAGATCTACAACTT
1 ACTTCAAGGAGATAAGATCTGCAACTT
23383082 CAATTTGCTC
Statistics
Matches: 101, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
95 15 0.15
96 76 0.75
97 10 0.10
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (97 bp):
ACTTCAAGGAGATAAGATCTGCAACTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGAAAATA
AGATTCTCCATCTTCAGTCTACTCCTACTACA
Found at i:23383103 original size:44 final size:45
Alignment explanation
Indices: 23382990--23383116 Score: 148
Period size: 45 Copynumber: 2.8 Consensus size: 45
23382980 CAACTTTTAG
* * * *
23382990 CTTCAATCTGCTCCACTGCAACTTCAAGGAAATAAGATTTGCCAT
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATCTGACAA
* * *
23383035 CTTCAGTCTACTCCACTACAACTTCAAGGAGATAAGATCT-ACAA
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATCTGACAA
* * * *
23383079 CTTCAATTTGCTCCACTGCTACTTCAGGGAGATGAGAT
1 CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGAT
23383117 TTGTGGATTC
Statistics
Matches: 68, Mismatches: 14, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
44 33 0.49
45 35 0.51
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (45 bp):
CTTCAATCTGCTCCACTGCAACTTCAAGGAGATAAGATCTGACAA
Found at i:23401559 original size:22 final size:22
Alignment explanation
Indices: 23401531--23401572 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
23401521 ATGAGTATTC
*
23401531 GGTTATGGAAGATGTTTAAGAG
1 GGTTATGGAAGAGGTTTAAGAG
23401553 GGTTATGGAAGAGGTTTAAG
1 GGTTATGGAAGAGGTTTAAG
23401573 GGGATGTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31
Consensus pattern (22 bp):
GGTTATGGAAGAGGTTTAAGAG
Found at i:23403211 original size:39 final size:39
Alignment explanation
Indices: 23403159--23403286 Score: 202
Period size: 39 Copynumber: 3.3 Consensus size: 39
23403149 TATGAGATTG
23403159 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* *
23403198 AAAATATCCGGACATGAGATCCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
* * **
23403237 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
23403276 AAAATATCCGG
1 AAAATATCCGG
23403287 GTTAAAGACC
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 80 1.00
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
Found at i:23403300 original size:78 final size:76
Alignment explanation
Indices: 23403158--23403312 Score: 204
Period size: 78 Copynumber: 2.0 Consensus size: 76
23403148 GTATGAGATT
* * *
23403158 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGATCCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
*
23403223 GGCTATATGCTA
66 GGCT-TACGCTA
* * **
23403235 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTGGAAAAATATCCGG-GTTAAAGACCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACAT-AAGACCCG
23403299 CAGGCTTACGCTA
64 CAGGCTTACGCTA
23403312 G
1 G
23403313 TAATGTATTC
Statistics
Matches: 68, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
77 12 0.18
78 56 0.82
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.21
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTGGAAAAATATCCGGACATAAGACCCGCA
GGCTTACGCTA
Found at i:23416413 original size:46 final size:46
Alignment explanation
Indices: 23416346--23416520 Score: 314
Period size: 46 Copynumber: 3.8 Consensus size: 46
23416336 TGTAACCCGC
* * * *
23416346 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23416392 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23416438 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23416484 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23416521 TGCTCAACCA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:23427467 original size:40 final size:40
Alignment explanation
Indices: 23427422--23427657 Score: 212
Period size: 40 Copynumber: 5.9 Consensus size: 40
23427412 CGAATACACG
* * * *
23427422 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* ** *
23427462 ACACCAGCACGAATGCTCTTCGGGGTTTAGCACGGATATA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
23427502 TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * *
23427542 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTA
1 TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
* * * *
23427582 GTAACTC-GCACCAATGC-CTTC-GGATCTTAGTCCGGATATGG
1 -TCAC-CAGCACGAATGCTCTTCGGGA-CTTAGCCCGGATAT-A
* *
23427623 TCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
1 TCAC-CAGCACGAATGCTCTTCGGGACTTAGCCCGGA
23427658 CATCATTCGA
Statistics
Matches: 160, Mismatches: 30, Indels: 12
0.79 0.15 0.06
Matches are distributed among these distances:
39 3 0.02
40 139 0.87
41 18 0.11
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA
Found at i:23427643 original size:120 final size:120
Alignment explanation
Indices: 23427422--23427657 Score: 270
Period size: 120 Copynumber: 2.0 Consensus size: 120
23427412 CGAATACACG
* * *
23427422 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACGAATGCTCTTCGGGG
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACCAATGCTCTTCGGGA
*
23427487 TTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
66 TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
* * * *
23427542 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAAC-TC-GCACCAATGC-CTTC-
1 TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGA--CA-TAACACCAGCACCAATGCTCTTCG
* *
23427603 GGATCTTAGTC-CGGATATGGTCACTTAGCAC-AAAGC-CTTCGGGACTTAGCCCGGA
63 GGAT-TTAG-CACGGATAT-ATCAC-TAGCACGAAAGCTCTTCGGAACTTAGCCCGGA
23427658 CATCATTCGA
Statistics
Matches: 99, Mismatches: 10, Indels: 14
0.80 0.08 0.11
Matches are distributed among these distances:
119 3 0.03
120 66 0.67
121 18 0.18
122 8 0.08
123 4 0.04
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (120 bp):
TCACCAGCATGAATGCTCTTCGGGACCTAGCCCGGACATAACACCAGCACCAATGCTCTTCGGGA
TTTAGCACGGATATATCACTAGCACGAAAGCTCTTCGGAACTTAGCCCGGATACA
Found at i:23428004 original size:29 final size:29
Alignment explanation
Indices: 23427965--23428043 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
23427955 CTTAATAATC
*
23427965 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
23427995 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
23428024 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
23428044 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:23429420 original size:40 final size:40
Alignment explanation
Indices: 23429151--23429411 Score: 342
Period size: 40 Copynumber: 6.5 Consensus size: 40
23429141 CGCATGATTA
* * * *
23429151 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** ** *
23429191 CTCTTTGGGGTTTAGCAAGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* * *
23429231 CTCTTTGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
23429271 CTCTTCGAGATTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
23429311 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
23429351 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
23429391 CTCTTCGGGATTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
23429412 CATTTCACTC
Statistics
Matches: 194, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 194 1.00
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:23429420 original size:120 final size:120
Alignment explanation
Indices: 23429151--23429420 Score: 389
Period size: 120 Copynumber: 2.2 Consensus size: 120
23429141 CGCATGATTA
** * * * *** *
23429151 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCAAGGATATA
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCAAGGATACA
*
23429216 TCACTAGCACGAATGCTCTTTGGAACTTAGTCCGGATACATCACTAGCACGAATG
66 TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* * *
23429271 CTCTTCGAGATTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGTC-CGGATAC
1 CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAG-CAAGGATAC
23429335 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
65 ATCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
* *
23429391 CTCTTCGGGATTTAGCCCGGACATTTCACT
1 CTCTTCGGGATTTAGCCCGGATATATCACT
23429421 CTCAATTCTC
Statistics
Matches: 132, Mismatches: 17, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
120 131 0.99
121 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
CTCTTCGGGATTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCAAGGATACA
TCACTAGCACGAATGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
Found at i:23430939 original size:47 final size:47
Alignment explanation
Indices: 23430870--23431001 Score: 192
Period size: 47 Copynumber: 2.8 Consensus size: 47
23430860 CCTTCGGGAC
* * * * *
23430870 TTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCA
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCA
*
23430917 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCA
23430964 TTATCACATATATATACACTTTCACATTCATCACATCG
1 TTATCAC--ATATATACACTTTCACATTCATCACATCG
23431002 CATTCATCAC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 48 0.62
49 29 0.38
ACGTcount: A:0.30, C:0.27, G:0.08, T:0.35
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCA
Found at i:23430995 original size:49 final size:49
Alignment explanation
Indices: 23430869--23431186 Score: 265
Period size: 49 Copynumber: 6.3 Consensus size: 49
23430859 CCCTTCGGGA
* * * *
23430869 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23430916 ATTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
23430963 CTTATCACATATATATACACTTTCACATTCATCACATC-GCATTCATCACATCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGC---CAT----TAGGC
* * * * * * * * * *
23431018 CATAGGC-CTTATCACATATA-TATACACTTTCA-CATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATAT-ATATACACT-TTCACATTCATCA--CAT--C--GGCCA-TTAGGC
* *
23431074 CTTATCACATATATATACCCTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23431123 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
23431172 CTTATCACATATATA
1 CTTATCACATATATA
23431187 CTTTCACGTA
Statistics
Matches: 215, Mismatches: 31, Indels: 48
0.73 0.11 0.16
Matches are distributed among these distances:
46 1 0.00
47 46 0.21
48 2 0.01
49 96 0.45
50 1 0.00
51 3 0.01
52 1 0.00
54 3 0.01
55 27 0.13
56 28 0.13
57 3 0.01
59 2 0.01
60 1 0.00
62 1 0.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:23431007 original size:14 final size:14
Alignment explanation
Indices: 23430988--23431015 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
23430978 TACACTTTCA
23430988 CATTCATCACATCG
1 CATTCATCACATCG
23431002 CATTCATCACATCG
1 CATTCATCACATCG
23431016 GCCATAGGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.36, G:0.07, T:0.29
Consensus pattern (14 bp):
CATTCATCACATCG
Found at i:23431038 original size:62 final size:63
Alignment explanation
Indices: 23430939--23431063 Score: 243
Period size: 62 Copynumber: 2.0 Consensus size: 63
23430929 TACACTTTCA
23430939 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
23431002 CATTCATCACATCGGCCA-TAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
1 CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
23431064 GCCATTAGGC
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
62 44 0.71
63 18 0.29
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.31
Consensus pattern (63 bp):
CATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCG
Found at i:23431103 original size:111 final size:109
Alignment explanation
Indices: 23430911--23431112 Score: 368
Period size: 111 Copynumber: 1.8 Consensus size: 109
23430901 CGTTGGCTAT
23430911 TAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
1 TAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
23430976 TATACACTTTCACATTCATCACATCGCATTCATCACATCGGCCA
66 TATACACTTTCACATTCATCACATCGCATTCATCACATCGGCCA
*
23431020 TAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
1 TAGGCATTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATA
*
23431085 TATATACCCTTTCACATTCATCACATCG
64 TATATACACTTTCACATTCATCACATCG
23431113 GCTATTAGGC
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
109 12 0.13
111 77 0.87
ACGTcount: A:0.31, C:0.29, G:0.08, T:0.32
Consensus pattern (109 bp):
TAGGCATTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATA
TATACACTTTCACATTCATCACATCGCATTCATCACATCGGCCA
Found at i:23431129 original size:160 final size:156
Alignment explanation
Indices: 23430869--23431161 Score: 487
Period size: 160 Copynumber: 1.9 Consensus size: 156
23430859 CCCTTCGGGA
* * *
23430869 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCTATTAGGCATTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGCATTATCACATATATACAC
23430934 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
23430999 TCGCATTCATCACATCGGCCATAGGC
131 TCGCATTCATCACATCGGCCATAGGC
* *
23431025 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAT
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCATTAGGCATTATCAC--ATATAT
* *
23431090 ACCCTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCAT
62 ACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCAT
23431155 CACATCG
127 CACATCG
23431162 GCCATTAGGC
Statistics
Matches: 126, Mismatches: 7, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
156 10 0.08
157 1 0.01
158 39 0.31
160 76 0.60
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (156 bp):
CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGCATTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
TCGCATTCATCACATCGGCCATAGGC
Found at i:23431133 original size:98 final size:97
Alignment explanation
Indices: 23431002--23431186 Score: 352
Period size: 98 Copynumber: 1.9 Consensus size: 97
23430992 CATCACATCG
23431002 CATTCATCACATCGGCCATAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCC
1 CATTCATCACATCGGCCATAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCC
23431067 ATTAGGCCTTATCACATATATATACCCTTTCA
66 ATTAGGCCTTATCACATATATATACCCTTTCA
*
23431099 CATTCATCACATCGGCTATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
1 CATTCATCACATCGGCCA-TAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGC
23431164 CATTAGGCCTTATCACATATATA
65 CATTAGGCCTTATCACATATATA
23431187 CTTTCACGTA
Statistics
Matches: 86, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
97 17 0.20
98 69 0.80
ACGTcount: A:0.30, C:0.29, G:0.09, T:0.32
Consensus pattern (97 bp):
CATTCATCACATCGGCCATAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCC
ATTAGGCCTTATCACATATATATACCCTTTCA
Found at i:23432055 original size:106 final size:106
Alignment explanation
Indices: 23431870--23432081 Score: 415
Period size: 106 Copynumber: 2.0 Consensus size: 106
23431860 CACATTACTG
23431870 CTGTCCTAAGCAGACTATTTCAAATTACCCTTAAATTCCCAAGCTCAAACACTTAAGAAATTACC
1 CTGTCCTAAGCAGACTATTTCAAATTACCCTTAAATTCCCAAGCTCAAACACTTAAGAAATTACC
23431935 ATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATT
66 ATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATT
*
23431976 CTGTCCTAAGCAGACTATTTCAAATTACCCTTAAATTCCCAAGCTCAAACACTTAAGAACTTACC
1 CTGTCCTAAGCAGACTATTTCAAATTACCCTTAAATTCCCAAGCTCAAACACTTAAGAAATTACC
23432041 ATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATT
66 ATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATT
23432082 AAATCAACTC
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
106 105 1.00
ACGTcount: A:0.34, C:0.25, G:0.09, T:0.31
Consensus pattern (106 bp):
CTGTCCTAAGCAGACTATTTCAAATTACCCTTAAATTCCCAAGCTCAAACACTTAAGAAATTACC
ATTTGAGCTTAGAACATATCATGGCCACATCATATCTTATT
Found at i:23436491 original size:46 final size:46
Alignment explanation
Indices: 23436441--23436616 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
23436431 TGGTTGAGCA
23436441 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
23436487 TCCGAACTCGTTGAGTTGAGTCCGAGTTCA-TGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
23436532 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
23436580 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23436617 GCGGGTTACA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.04
45 3 0.03
46 63 0.56
47 30 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:23436597 original size:93 final size:93
Alignment explanation
Indices: 23436438--23436608 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
23436428 GGATGGTTGA
* *
23436438 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
23436503 TGAGTCCGAGTTCATGAGATGTAACTAG
66 TGAGTCCAAGTTCATGAGATGTAACTAG
*
23436531 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
23436596 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
23436609 GCTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCATGAGATGTAACTAG
Found at i:23437527 original size:75 final size:75
Alignment explanation
Indices: 23437404--23437548 Score: 272
Period size: 75 Copynumber: 1.9 Consensus size: 75
23437394 AAGGAATTAG
*
23437404 ATGTTAGAAGATATTTGAATTTTAGTGAAACAGGGTCATAGCAGTTTTTGAATCCCCTGTTCCAA
1 ATGTTAGAAGATATTTGAATTTTAGTGAAACAGGGTCATAGCAGTTTTTGAATCCCCTATTCCAA
23437469 ATTTATATAT
66 ATTTATATAT
23437479 ATGTTAGAAGATATTTGAATTTTAGTGAAACAGGGTCATAGCAGTTTTTGAATCCCCTATTCCAA
1 ATGTTAGAAGATATTTGAATTTTAGTGAAACAGGGTCATAGCAGTTTTTGAATCCCCTATTCCAA
*
23437544 CTTTA
66 ATTTA
23437549 GAAATTCATT
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
75 68 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (75 bp):
ATGTTAGAAGATATTTGAATTTTAGTGAAACAGGGTCATAGCAGTTTTTGAATCCCCTATTCCAA
ATTTATATAT
Found at i:23438382 original size:12 final size:12
Alignment explanation
Indices: 23438365--23438391 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
23438355 ACACACGCCT
23438365 GTGTGCTAGGCC
1 GTGTGCTAGGCC
23438377 GTGTGCTAGGCC
1 GTGTGCTAGGCC
23438389 GTG
1 GTG
23438392 CCAAACCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.22, G:0.44, T:0.26
Consensus pattern (12 bp):
GTGTGCTAGGCC
Found at i:23439529 original size:41 final size:40
Alignment explanation
Indices: 23439469--23439569 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 40
23439459 ATAGCCTCAT
*
23439469 ATTGCACACTAAGTGCCATATATAGCCAAATCTATCTCG-
1 ATTGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGA
* *
23439508 ATCTCGCACACTAAGTGCCATATATATAGCCGAAGCTATGTCGA
1 AT-T-GCACACTAAGTGCC--ATATATAGCCAAAGCTATCTCGA
23439552 ATTGCACACTAAGTGCCA
1 ATTGCACACTAAGTGCCA
23439570 CTTATAGTTG
Statistics
Matches: 54, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
39 2 0.04
40 2 0.04
41 14 0.26
42 14 0.26
43 20 0.37
44 2 0.04
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.26
Consensus pattern (40 bp):
ATTGCACACTAAGTGCCATATATAGCCAAAGCTATCTCGA
Found at i:23441479 original size:43 final size:43
Alignment explanation
Indices: 23441369--23441479 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 43
23441359 TGTACAAGTT
* *
23441369 ATACTTCGGTTTATCTAATGATGCATTTTATGTGCTAGTATAA
1 ATACTTCGGTTTATCCAATGATGCATTGTATGTGCTAGTATAA
* * * * *
23441412 TTACTTCGGTATATTCGATGATGCATTGTGTGTGCTAGTATAA
1 ATACTTCGGTTTATCCAATGATGCATTGTATGTGCTAGTATAA
* * *
23441455 ATGCTTCGGTTTGTCCAATAATGCA
1 ATACTTCGGTTTATCCAATGATGCA
23441480 CCATGTATGC
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
43 54 1.00
ACGTcount: A:0.25, C:0.14, G:0.20, T:0.41
Consensus pattern (43 bp):
ATACTTCGGTTTATCCAATGATGCATTGTATGTGCTAGTATAA
Found at i:23453011 original size:39 final size:39
Alignment explanation
Indices: 23452957--23453115 Score: 221
Period size: 39 Copynumber: 4.1 Consensus size: 39
23452947 CCGGGTACCA
** *
23452957 TTCCAGCATGTAGCCTACGGA-CTACAAGTCTGGATATAT
1 TTCCAGCACATAGCCTGCGGACCT-CAAGTCTGGATATAT
*
23452996 TTCCAGCACATAGCCTGCGGACTTCAAGTCTGGATATAT
1 TTCCAGCACATAGCCTGCGGACCTCAAGTCTGGATATAT
* *
23453035 TTCCAGCACATAGCCTGCGGACCTCATGTCCGGATATAT
1 TTCCAGCACATAGCCTGCGGACCTCAAGTCTGGATATAT
* * *
23453074 TCCCAGCATATAGCCTGCGGACCTCATGTCTGGATATAT
1 TTCCAGCACATAGCCTGCGGACCTCAAGTCTGGATATAT
23453113 TTC
1 TTC
23453116 AAATACCATG
Statistics
Matches: 108, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 107 0.99
40 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (39 bp):
TTCCAGCACATAGCCTGCGGACCTCAAGTCTGGATATAT
Found at i:23456925 original size:43 final size:42
Alignment explanation
Indices: 23456822--23456942 Score: 163
Period size: 43 Copynumber: 2.9 Consensus size: 42
23456812 TAGGGTTACT
* *
23456822 GAGATTACGTGTAAGACCATATCTGGGATATGGCATCGATAT
1 GAGATTACATGTAAGACCATATCTGGGATATGGCATCGATAC
* *
23456864 GAGACTT-CATGTAAGACCATTTCTGGGTTATTGGCATCGATAC
1 GAGA-TTACATGTAAGACCATATCTGGGATA-TGGCATCGATAC
* *
23456907 GAGATTACATTTATGACCATATCTGGGATATGGCAT
1 GAGATTACATGTAAGACCATATCTGGGATATGGCAT
23456943 TGGTACGGTA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 32 0.47
43 36 0.53
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (42 bp):
GAGATTACATGTAAGACCATATCTGGGATATGGCATCGATAC
Found at i:23461017 original size:30 final size:30
Alignment explanation
Indices: 23460981--23461040 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
23460971 TAAATAGTTC
23460981 TTGCTGACTCGTTATGTTAGTGAAAGATCG
1 TTGCTGACTCGTTATGTTAGTGAAAGATCG
*
23461011 TTGCTGACTCGTTATGTTAGTGAAATATCG
1 TTGCTGACTCGTTATGTTAGTGAAAGATCG
23461041 GAAGATCCTG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.23, C:0.13, G:0.25, T:0.38
Consensus pattern (30 bp):
TTGCTGACTCGTTATGTTAGTGAAAGATCG
Found at i:23465286 original size:40 final size:40
Alignment explanation
Indices: 23465047--23465272 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
23465037 TTGAATGATG
* * * *
23465047 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAA
* * *
23465087 CCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23465127 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
23465167 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
23465207 TCCGGGTTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
23465248 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23465273 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.93
41 10 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:23467238 original size:39 final size:40
Alignment explanation
Indices: 23467001--23467343 Score: 459
Period size: 40 Copynumber: 8.7 Consensus size: 40
23466991 GCTCCTCGTT
* *
23467001 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
23467041 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
23467081 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
23467121 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
*
23467161 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
23467201 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
23467240 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
23467279 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
23467320 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23467344 CAGCATTCAA
Statistics
Matches: 277, Mismatches: 18, Indels: 17
0.89 0.06 0.05
Matches are distributed among these distances:
38 2 0.01
39 91 0.33
40 172 0.62
41 12 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:23475194 original size:40 final size:40
Alignment explanation
Indices: 23475150--23475411 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
23475140 GCTCCTCGTT
* *
23475150 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
23475190 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23475230 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23475269 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23475308 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
23475347 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
23475388 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23475412 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:23484595 original size:80 final size:79
Alignment explanation
Indices: 23484456--23484621 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 79
23484446 GGACTAAGAT
**
23484456 CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCT
*
23484520 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
* * *
23484536 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGC
1 CCGAAGGCATTTGTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGC
* *
23484599 TATATCCGGTTAAATT
64 TAAATCCGGTTAAATC
23484615 CCGAAGG
1 CCGAAGG
23484622 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
79 17 0.23
80 56 0.75
81 2 0.03
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:23484602 original size:40 final size:40
Alignment explanation
Indices: 23484403--23484595 Score: 205
Period size: 40 Copynumber: 4.8 Consensus size: 40
23484393 TTGAATGATG
* * * * *
23484403 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGA-GTTACTAAA
* *
23484443 CCCGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* *
23484483 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAA
* *
23484523 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AA
* *
23484564 -CCGGGCTATGTCCCGAAGGCATTTGAACGAGT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGT
23484596 AGCTATATCC
Statistics
Matches: 134, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.01
40 123 0.92
41 10 0.07
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAA
Found at i:23486305 original size:28 final size:28
Alignment explanation
Indices: 23486242--23486364 Score: 176
Period size: 28 Copynumber: 4.4 Consensus size: 28
23486232 ATATTAAGTC
* *
23486242 CGCACACTCAGAGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
23486269 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
23486297 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
23486325 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
23486354 CGCACACTTAG
1 CGCACACTTAG
23486365 CGCCAATCTC
Statistics
Matches: 88, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
27 21 0.24
28 51 0.58
29 16 0.18
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:23493127 original size:12 final size:12
Alignment explanation
Indices: 23493099--23493127 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
23493089 CAAACCTATA
23493099 TGGTAGAATTTT
1 TGGTAGAATTTT
23493111 T-GTAGAATTTT
1 TGGTAGAATTTT
23493122 TGGTAG
1 TGGTAG
23493128 GGCCAATTAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.24, C:0.00, G:0.28, T:0.48
Consensus pattern (12 bp):
TGGTAGAATTTT
Found at i:23496923 original size:27 final size:27
Alignment explanation
Indices: 23496892--23497069 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
23496882 TAATTTGTAC
23496892 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
23496919 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGATTATGT
* ** *
23496945 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGATTATGT
* *
23496973 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGATTATGT
* *
23497001 AGCACTAAGAGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGATTATGT
* *
23497028 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGATTATGT
*
23497055 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23497070 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 105 0.83
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGATTATGT
Found at i:23497006 original size:82 final size:81
Alignment explanation
Indices: 23496893--23497048 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
23496883 AATTTGTACA
* * * *
23496893 GCACTAAGTGTGCGATTTGATTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGTA-GCACTAAGTG
23496957 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23496974 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGAGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGTAGCACTAAGTG
*
23497039 TGCGAGTTGA
65 TGCGAATTGA
23497049 TTATATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 15 0.23
82 49 0.75
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23497060 original size:82 final size:81
Alignment explanation
Indices: 23496889--23497069 Score: 211
Period size: 82 Copynumber: 2.2 Consensus size: 81
23496879 GATTAATTTG
* * * *
23496889 TACAGCACTAAGTGTGCGATTTGATTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGATGCACTAA
23496954 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23496970 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGAGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGAT-GCACT
* **
23497034 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23497052 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23497070 GACTCAATAT
Statistics
Matches: 82, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 18 0.22
82 64 0.78
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGAGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23502713 original size:24 final size:24
Alignment explanation
Indices: 23502681--23502799 Score: 195
Period size: 24 Copynumber: 5.0 Consensus size: 24
23502671 ACTTTATCAT
**
23502681 ATAACTGGGGCATAAGCCCTTTCA
1 ATAACTGGGGCATAAGCCCTTTTG
* *
23502705 ATAATTGGGGCATAAGCCCTTTTT
1 ATAACTGGGGCATAAGCCCTTTTG
23502729 ATAACT-GGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
23502752 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
23502776 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTG
23502800 CACTTCCTCC
Statistics
Matches: 89, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
23 22 0.25
24 67 0.75
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTG
Found at i:23502744 original size:47 final size:48
Alignment explanation
Indices: 23502680--23502797 Score: 193
Period size: 47 Copynumber: 2.5 Consensus size: 48
23502670 TACTTTATCA
*
23502680 TATAACTGGGGCATAAGCCCTTTCAATAATTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCCCTTTT
**
23502728 TATAACT-GGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTT
1 TATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCCCTTTT
*
23502775 GATAACTGGGGCATAAGCCCTTT
1 TATAACTGGGGCATAAGCCCTTT
23502798 TGCACTTCCT
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
47 43 0.66
48 22 0.34
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.31
Consensus pattern (48 bp):
TATAACTGGGGCATAAGCCCTTTCAATAACTGGGGCATAAGCCCTTTT
Found at i:23502876 original size:20 final size:20
Alignment explanation
Indices: 23502848--23502914 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
23502838 TTATGAATAC
*
23502848 ATCACGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
23502868 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23502888 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
23502908 ACCATGT
1 ATCATGT
23502915 TTATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:23505016 original size:40 final size:40
Alignment explanation
Indices: 23504958--23505155 Score: 208
Period size: 40 Copynumber: 5.0 Consensus size: 40
23504948 TTTAACTGGA
* ** *
23504958 TATAGCAACTCGTTCAAATGCCTTCGGGACATAGCCCGGT
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
* *
23504998 TATAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG-T
*
23505039 T-TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG-
1 TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
* ** *
23505076 AATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTTCGGA
1 TA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCGGT
* *
23505117 TATAGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGG
1 TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCGG
23505156 ACATCATTCG
Statistics
Matches: 132, Mismatches: 18, Indels: 16
0.80 0.11 0.10
Matches are distributed among these distances:
38 2 0.02
39 31 0.23
40 85 0.64
41 14 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGT
Found at i:23505073 original size:79 final size:80
Alignment explanation
Indices: 23504974--23505156 Score: 221
Period size: 79 Copynumber: 2.3 Consensus size: 80
23504964 AACTCGTTCA
* *
23504974 AATGCCTTCGGGACATAGCCCGG-TTATAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAATAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
23505037 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
* ***
23505054 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTTCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
*
23505118 ATAGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
23505133 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
23505157 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAATAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:23506933 original size:269 final size:269
Alignment explanation
Indices: 23506454--23506991 Score: 1076
Period size: 269 Copynumber: 2.0 Consensus size: 269
23506444 CAATCACACA
23506454 CATTCTTTCCTTTTTTTTTCCATTTCTTTATTACCCATACTCCTTATTTTATTTTTCCTAACATA
1 CATTCTTTCCTTTTTTTTTCCATTTCTTTATTACCCATACTCCTTATTTTATTTTTCCTAACATA
23506519 CATCACTAACATAACATGTTTGTGACATGTTTCCACTCATAGCATGGCCGGTCACTAAGCTTAAA
66 CATCACTAACATAACATGTTTGTGACATGTTTCCACTCATAGCATGGCCGGTCACTAAGCTTAAA
23506584 TTTGGGTAAATTGACATGCAAACCCATCATTTTCACAACATGCATTAATAGGCCATTTCACATTT
131 TTTGGGTAAATTGACATGCAAACCCATCATTTTCACAACATGCATTAATAGGCCATTTCACATTT
23506649 GCCTAGCACATTTCTAAATTTTCTCACATAAGTCCTATTTGATAAAATTCACTTACAATTGACAA
196 GCCTAGCACATTTCTAAATTTTCTCACATAAGTCCTATTTGATAAAATTCACTTACAATTGACAA
23506714 AATTCAAAC
261 AATTCAAAC
23506723 CATTCTTTCCTTTTTTTTTCCATTTCTTTATTACCCATACTCCTTATTTTATTTTTCCTAACATA
1 CATTCTTTCCTTTTTTTTTCCATTTCTTTATTACCCATACTCCTTATTTTATTTTTCCTAACATA
23506788 CATCACTAACATAACATGTTTGTGACATGTTTCCACTCATAGCATGGCCGGTCACTAAGCTTAAA
66 CATCACTAACATAACATGTTTGTGACATGTTTCCACTCATAGCATGGCCGGTCACTAAGCTTAAA
23506853 TTTGGGTAAATTGACATGCAAACCCATCATTTTCACAACATGCATTAATAGGCCATTTCACATTT
131 TTTGGGTAAATTGACATGCAAACCCATCATTTTCACAACATGCATTAATAGGCCATTTCACATTT
23506918 GCCTAGCACATTTCTAAATTTTCTCACATAAGTCCTATTTGATAAAATTCACTTACAATTGACAA
196 GCCTAGCACATTTCTAAATTTTCTCACATAAGTCCTATTTGATAAAATTCACTTACAATTGACAA
23506983 AATTCAAAC
261 AATTCAAAC
23506992 ATGAAATTTT
Statistics
Matches: 269, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
269 269 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.38
Consensus pattern (269 bp):
CATTCTTTCCTTTTTTTTTCCATTTCTTTATTACCCATACTCCTTATTTTATTTTTCCTAACATA
CATCACTAACATAACATGTTTGTGACATGTTTCCACTCATAGCATGGCCGGTCACTAAGCTTAAA
TTTGGGTAAATTGACATGCAAACCCATCATTTTCACAACATGCATTAATAGGCCATTTCACATTT
GCCTAGCACATTTCTAAATTTTCTCACATAAGTCCTATTTGATAAAATTCACTTACAATTGACAA
AATTCAAAC
Found at i:23511380 original size:21 final size:22
Alignment explanation
Indices: 23511356--23511396 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
23511346 CCTTAGAAAT
23511356 AGGGC-ACACACCCATGTGGAA
1 AGGGCAACACACCCATGTGGAA
* *
23511377 AGGGCAACACGCCCGTGTGG
1 AGGGCAACACACCCATGTGG
23511397 CCAATTCGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 5 0.29
22 12 0.71
ACGTcount: A:0.27, C:0.29, G:0.34, T:0.10
Consensus pattern (22 bp):
AGGGCAACACACCCATGTGGAA
Found at i:23512724 original size:46 final size:45
Alignment explanation
Indices: 23512593--23512724 Score: 128
Period size: 46 Copynumber: 2.9 Consensus size: 45
23512583 TATCTATGCT
* * *
23512593 GATGCCATGTCCCAGACATGGTCTTACACTG-ACACATCTCGTAGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGCACTCGTCTCGTAGCA
*
23512639 GATGCATGTCCCAGACATGTCTTACACCGGCTTA-T-GTCTCG-AGGCA
1 GATGCATGTCCCAGACATGTCTTACA-CTGC--ACTCGTCTCGTA-GCA
*
23512685 GATGCATGTCCCAAACATGTCTTACACTAGCACTCGTCTC
1 GATGCATGTCCCAGACATGTCTTACACT-GCACTCGTCTC
23512725 AATACTAGTG
Statistics
Matches: 72, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
44 9 0.12
45 19 0.26
46 43 0.60
48 1 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.26
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGCACTCGTCTCGTAGCA
Found at i:23515842 original size:24 final size:24
Alignment explanation
Indices: 23515793--23515842 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
23515783 TTCGTGTGAT
* *
23515793 AACAATAATGCTATGTTATACTTG
1 AACAATAATGCTATGATATACATG
*
23515817 AACATTAATGCT-TGATATTACATG
1 AACAATAATGCTATGATA-TACATG
23515841 AA
1 AA
23515843 TTGTAAGTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 4 0.18
24 18 0.82
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (24 bp):
AACAATAATGCTATGATATACATG
Found at i:23522038 original size:29 final size:28
Alignment explanation
Indices: 23521991--23522118 Score: 114
Period size: 28 Copynumber: 4.5 Consensus size: 28
23521981 CATGAGATTG
* * *
23521991 GCACTAAGTGTTCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-AATTGTATA
* * *
23522020 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
* *
23522048 GCACTAAGTGTGTGAGTTTGATTATGTA-A
1 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
* * *
23522077 GCACTAAGTGTGCGAGTTTGAGTATATA
1 GCACTAAGTGTGCGAGTTTAATTGTATA
*
23522105 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
23522119 GACTTACTAT
Statistics
Matches: 79, Mismatches: 17, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
27 3 0.04
28 37 0.47
29 36 0.46
30 3 0.04
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTATA
Found at i:23522057 original size:28 final size:28
Alignment explanation
Indices: 23522017--23522118 Score: 150
Period size: 28 Copynumber: 3.6 Consensus size: 28
23522007 TTTAAATTGC
*
23522017 ATAGCACTAAGTGTGCAAGTTTGATTAT
1 ATAGCACTAAGTGTGCGAGTTTGATTAT
*
23522045 ATAGCACTAAGTGTGTGAGTTTGATTAT
1 ATAGCACTAAGTGTGCGAGTTTGATTAT
* *
23522073 GTAAGCACTAAGTGTGCGAGTTTGAGTAT
1 AT-AGCACTAAGTGTGCGAGTTTGATTAT
*
23522102 ATAACACTAAGTGTGCG
1 ATAGCACTAAGTGTGCG
23522119 GACTTACTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
28 41 0.62
29 25 0.38
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.33
Consensus pattern (28 bp):
ATAGCACTAAGTGTGCGAGTTTGATTAT
Found at i:23526451 original size:47 final size:47
Alignment explanation
Indices: 23526399--23527272 Score: 1541
Period size: 47 Copynumber: 18.6 Consensus size: 47
23526389 GATAATTGTG
* * * *
23526399 ATGTGAATGTATATATATGTGATAAGGCCGAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526446 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526493 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526540 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526587 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526634 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526681 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526728 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526775 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526822 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526869 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23526916 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
23526963 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
* * *
23527010 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCAATGTGTTGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
23527057 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGA
23527106 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
* * *
23527153 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGCGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
* * * * * * * *
23527200 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
*
23527247 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
23527273 TCCCGAAGGG
Statistics
Matches: 800, Mismatches: 25, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
47 755 0.94
49 45 0.06
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
Found at i:23538632 original size:28 final size:28
Alignment explanation
Indices: 23538558--23538656 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
23538548 CATGAGATTT
* * **
23538558 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
* *
23538587 GCACTAAGTTTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
23538615 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
23538643 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
23538657 GACTTACTAT
Statistics
Matches: 61, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
28 45 0.74
29 16 0.26
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:23554955 original size:22 final size:21
Alignment explanation
Indices: 23554920--23554960 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
23554910 TTTTCCTTCT
* *
23554920 ATTTTATTTACTTTCTTATTA
1 ATTTTATATACTTTATTATTA
23554941 ATTTTAGTATACTTTATTAT
1 ATTTTA-TATACTTTATTAT
23554961 AAACTTTTCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.27, C:0.07, G:0.02, T:0.63
Consensus pattern (21 bp):
ATTTTATATACTTTATTATTA
Found at i:23558429 original size:20 final size:20
Alignment explanation
Indices: 23558363--23558429 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
23558353 ATTTTGATAA
*
23558363 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
23558383 ACATGACATGTATAATATGC
1 ACATGATATGTATGATATGC
23558403 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
23558423 ACGTGAT
1 ACATGAT
23558430 GTATTCATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:23558524 original size:24 final size:24
Alignment explanation
Indices: 23558479--23558626 Score: 253
Period size: 24 Copynumber: 6.2 Consensus size: 24
23558469 GAGGAAGTGC
*
23558479 AAAAGGGCTTATG-CCCAGTTATC
1 AAAAGGGCTTATGCCCCAGTTATT
*
23558502 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATT
*
23558526 AAAAGGGCTTATGCCCCAGTTATA
1 AAAAGGGCTTATGCCCCAGTTATT
23558550 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
23558574 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
*
23558598 AAAAGGGCTTTTGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
23558622 AAAAG
1 AAAAG
23558627 AGGATAGGCG
Statistics
Matches: 121, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
23 13 0.11
24 108 0.89
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:23565088 original size:28 final size:28
Alignment explanation
Indices: 23565025--23565458 Score: 719
Period size: 28 Copynumber: 15.5 Consensus size: 28
23565015 ATATTAAGTC
* *
23565025 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
23565052 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
23565080 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
23565108 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
23565136 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
23565164 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
23565192 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
23565220 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
23565248 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
23565276 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
23565304 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
23565332 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
23565360 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
23565388 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
* * *
23565416 CGCACACTTAGTGCTGAGCA-ATTTAAACC
1 CGCACACTTAGTGCT-A-CATAATCAAACT
23565445 CGCACACTTAGTGC
1 CGCACACTTAGTGC
23565459 CAATCTCATG
Statistics
Matches: 397, Mismatches: 7, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
27 22 0.06
28 352 0.89
29 21 0.05
30 2 0.01
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:23573093 original size:48 final size:48
Alignment explanation
Indices: 23573033--23573234 Score: 305
Period size: 48 Copynumber: 4.2 Consensus size: 48
23573023 CGGCCACAAT
* * * *
23573033 ATATACACATCTCATACATATTTCACATTAGCCATACGGCTTTACTAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
23573081 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
* ** *
23573129 ATATATATATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
*
23573177 ATATACATATCTCATACATTTTTCACATTAGCCATTCGGATTTACCAC
1 ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
* *
23573225 ACATATATAT
1 ATATACATAT
23573235 ATTTATCTTG
Statistics
Matches: 139, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 139 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.37
Consensus pattern (48 bp):
ATATACATATCTCATACATATTTCACATTAGCCATTCGGATTTACCAC
Found at i:23585490 original size:179 final size:179
Alignment explanation
Indices: 23585190--23585546 Score: 714
Period size: 179 Copynumber: 2.0 Consensus size: 179
23585180 CGAGGACATA
23585190 ATGGGGTATGGGGTTATCATTCGAGACAATGATTGTTTTGTGCTCGAGGGTGGTGGGGGTTTTAT
1 ATGGGGTATGGGGTTATCATTCGAGACAATGATTGTTTTGTGCTCGAGGGTGGTGGGGGTTTTAT
23585255 GGACACTAAAATGTCAGTACAGGAGGCGGAATACATTGCGTTTGAGAGAAGCATTGAGCTAGCCG
66 GGACACTAAAATGTCAGTACAGGAGGCGGAATACATTGCGTTTGAGAGAAGCATTGAGCTAGCCG
23585320 GTCACCTCAACATTAATGATAATGTGCTGTTTTAAACTGACCATGGGGT
131 GTCACCTCAACATTAATGATAATGTGCTGTTTTAAACTGACCATGGGGT
23585369 ATGGGGTATGGGGTTATCATTCGAGACAATGATTGTTTTGTGCTCGAGGGTGGTGGGGGTTTTAT
1 ATGGGGTATGGGGTTATCATTCGAGACAATGATTGTTTTGTGCTCGAGGGTGGTGGGGGTTTTAT
23585434 GGACACTAAAATGTCAGTACAGGAGGCGGAATACATTGCGTTTGAGAGAAGCATTGAGCTAGCCG
66 GGACACTAAAATGTCAGTACAGGAGGCGGAATACATTGCGTTTGAGAGAAGCATTGAGCTAGCCG
23585499 GTCACCTCAACATTAATGATAATGTGCTGTTTTAAACTGACCATGGGG
131 GTCACCTCAACATTAATGATAATGTGCTGTTTTAAACTGACCATGGGG
23585547 GCCTTGTTAA
Statistics
Matches: 178, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
179 178 1.00
ACGTcount: A:0.26, C:0.14, G:0.31, T:0.29
Consensus pattern (179 bp):
ATGGGGTATGGGGTTATCATTCGAGACAATGATTGTTTTGTGCTCGAGGGTGGTGGGGGTTTTAT
GGACACTAAAATGTCAGTACAGGAGGCGGAATACATTGCGTTTGAGAGAAGCATTGAGCTAGCCG
GTCACCTCAACATTAATGATAATGTGCTGTTTTAAACTGACCATGGGGT
Found at i:23587044 original size:25 final size:24
Alignment explanation
Indices: 23587016--23587126 Score: 91
Period size: 25 Copynumber: 4.5 Consensus size: 24
23587006 TATAATAGGG
23587016 ATAAAATAG-ATATAATAATATATAC
1 ATAAAATAGTAT-TAA-AATATATAC
*
23587041 ATAAAATAGTATTAAAAGTATATAT
1 ATAAAATAGTATTAAAA-TATATAC
* *
23587066 ATAACATAGTATTCAAGAATTTATAC
1 ATAAAATAGTATT-AA-AATATATAC
* *
23587092 ATAAGAT-GATATAAAAATATATAC
1 ATAAAATAG-TATTAAAATATATAC
**
23587116 ATGGAATAGTA
1 ATAAAATAGTA
23587127 AAAGAAATAT
Statistics
Matches: 70, Mismatches: 10, Indels: 13
0.75 0.11 0.14
Matches are distributed among these distances:
24 16 0.23
25 34 0.49
26 18 0.26
27 2 0.03
ACGTcount: A:0.54, C:0.05, G:0.09, T:0.32
Consensus pattern (24 bp):
ATAAAATAGTATTAAAATATATAC
Found at i:23587340 original size:22 final size:23
Alignment explanation
Indices: 23587302--23587363 Score: 74
Period size: 22 Copynumber: 2.7 Consensus size: 23
23587292 AGAAATATAC
23587302 ATAATATATAAATATATATA-ACTA
1 ATAATATATAAA-ATATATACA-TA
* *
23587326 ATGATAT-TAAAATATGTACATA
1 ATAATATATAAAATATATACATA
23587348 ATAATATATAAAATAT
1 ATAATATATAAAATAT
23587364 TAAAAGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
22 14 0.42
23 13 0.39
24 6 0.18
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.37
Consensus pattern (23 bp):
ATAATATATAAAATATATACATA
Found at i:23587423 original size:23 final size:23
Alignment explanation
Indices: 23587370--23587418 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 23
23587360 ATATTAAAAG
*
23587370 AAAACATATATACATAACATATAT
1 AAAA-ATATATACATAACATACAT
23587394 AAAAATATATACATATACATACAT
1 AAAAATATATACATA-ACATACAT
23587418 A
1 A
23587419 TAATACAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 11 0.48
24 12 0.52
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (23 bp):
AAAAATATATACATAACATACAT
Found at i:23587453 original size:3 final size:3
Alignment explanation
Indices: 23587445--23587584 Score: 74
Period size: 3 Copynumber: 46.0 Consensus size: 3
23587435 AATGTTATAT
* *
23587445 ATA ATA ATA ATA CTA GA-A ATA ATA ATA ATTA GTA ATA ATA ATA CATTA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA A-TA ATA ATA ATA ATA -A-TA
* * * * * **
23587493 AAA ATA ATA AT- ATG TTA ATA ACT- AGA ATA TTA ATA ATA GCA ATA
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
* * *
23587537 ATA AT- ATA CATA ATA ATA TTA ATA ATA TTA GA-A ATG ATA ATA ATA
1 ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA
23587582 ATA
1 ATA
23587585 TTTAATAAAA
Statistics
Matches: 102, Mismatches: 23, Indels: 24
0.68 0.15 0.16
Matches are distributed among these distances:
2 6 0.06
3 86 0.84
4 8 0.08
5 2 0.02
ACGTcount: A:0.58, C:0.04, G:0.05, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:23587510 original size:17 final size:17
Alignment explanation
Indices: 23587447--23587504 Score: 68
Period size: 17 Copynumber: 3.6 Consensus size: 17
23587437 TGTTATATAT
*
23587447 AATAATAATAC--TAGA
1 AATAATAATACATTAAA
**
23587462 AATAATAATA-ATTAGT
1 AATAATAATACATTAAA
23587478 AATAATAATACATTAAA
1 AATAATAATACATTAAA
23587495 AATAATAATA
1 AATAATAATA
23587505 TGTTAATAAC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
15 10 0.27
16 13 0.35
17 14 0.38
ACGTcount: A:0.62, C:0.03, G:0.03, T:0.31
Consensus pattern (17 bp):
AATAATAATACATTAAA
Found at i:23587513 original size:31 final size:30
Alignment explanation
Indices: 23587444--23587504 Score: 86
Period size: 33 Copynumber: 1.9 Consensus size: 30
23587434 TAATGTTATA
*
23587444 TATAATAATAATACTAGAAATAATAATAAT
1 TATAATAATAATACTAAAAATAATAATAAT
23587474 TAGTAATAATAATACATTAAAAATAATAATA
1 TA-TAATAATAATAC--TAAAAATAATAATA
23587505 TGTTAATAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 2 0.07
31 12 0.44
33 13 0.48
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (30 bp):
TATAATAATAATACTAAAAATAATAATAAT
Found at i:23588150 original size:16 final size:16
Alignment explanation
Indices: 23588129--23588162 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
23588119 TGGTGGAGCA
*
23588129 GGTGGCAGTGGGTGGT
1 GGTGGCAGAGGGTGGT
23588145 GGTGGCAGAGGGTGGT
1 GGTGGCAGAGGGTGGT
23588161 GG
1 GG
23588163 CAGACCATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.06, G:0.65, T:0.21
Consensus pattern (16 bp):
GGTGGCAGAGGGTGGT
Found at i:23588158 original size:13 final size:13
Alignment explanation
Indices: 23588142--23588166 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23588132 GGCAGTGGGT
23588142 GGTGGTGGCAGAG
1 GGTGGTGGCAGAG
23588155 GGTGGTGGCAGA
1 GGTGGTGGCAGA
23588167 CCATAGGGCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.60, T:0.16
Consensus pattern (13 bp):
GGTGGTGGCAGAG
Found at i:23588217 original size:13 final size:13
Alignment explanation
Indices: 23588199--23588223 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23588189 GGCTAGGGTT
23588199 TTTTTTTGTTTTG
1 TTTTTTTGTTTTG
23588212 TTTTTTTGTTTT
1 TTTTTTTGTTTT
23588224 AGATATTGGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (13 bp):
TTTTTTTGTTTTG
Done.