Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 81 of 322
Found at i:25791686 original size:26 final size:24
Alignment explanation
Indices: 25791656--25791741 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 24
25791646 GTTATTAAAT
25791656 TTTAATAGGATTATTATTAAATATAA
1 TTTAATA--ATTATTATTAAATATAA
* * * *
25791682 TTTAATAATAAATAATTTAATCATAT
1 TTTAATAAT-TATTATTAAAT-ATAA
25791708 TTTAATATAATTATTATTAAATATAA
1 TTT-A-ATAATTATTATTAAATATAA
25791734 TTTAATAA
1 TTTAATAA
25791742 AAAAAATATA
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
24 6 0.12
25 9 0.19
26 19 0.40
27 9 0.19
28 5 0.10
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (24 bp):
TTTAATAATTATTATTAAATATAA
Found at i:25791750 original size:19 final size:19
Alignment explanation
Indices: 25791726--25791762 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
25791716 AATTATTATT
25791726 AAATATAATTTAATAAAAA
1 AAATATAATTTAATAAAAA
25791745 AAATATAATTTAATAAAA
1 AAATATAATTTAATAAAA
25791763 TTTTTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (19 bp):
AAATATAATTTAATAAAAA
Found at i:25792429 original size:31 final size:32
Alignment explanation
Indices: 25792386--25792458 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
25792376 AATTTAATAA
*
25792386 AAAATATATATAACATTATTAA-TTATTAAA-TT
1 AAAATA-ATATAA-AATATTAATTTATTAAAGTT
*
25792418 AAAATAATATAAAATATTAATTTTTTAAAGTT
1 AAAATAATATAAAATATTAATTTATTAAAGTT
25792450 AAAA-AATAT
1 AAAATAATAT
25792459 TATGGGCTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
30 7 0.19
31 18 0.49
32 12 0.32
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (32 bp):
AAAATAATATAAAATATTAATTTATTAAAGTT
Found at i:25792694 original size:20 final size:19
Alignment explanation
Indices: 25792664--25792711 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
25792654 TAGAGGAGAA
25792664 AAAATTT-TAATCATTTTTT
1 AAAATTTATAAT-ATTTTTT
25792683 AAAATTTATAATATTTTTT
1 AAAATTTATAATATTTTTT
**
25792702 TGAATTTATA
1 AAAATTTATA
25792712 TTTATGTCTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 22 0.85
20 4 0.15
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.56
Consensus pattern (19 bp):
AAAATTTATAATATTTTTT
Found at i:25805652 original size:7 final size:7
Alignment explanation
Indices: 25805640--25805685 Score: 74
Period size: 7 Copynumber: 6.4 Consensus size: 7
25805630 AGCATACAAA
25805640 GGTTTAG
1 GGTTTAG
25805647 GGTTTAG
1 GGTTTAG
*
25805654 GATTTAG
1 GGTTTAG
25805661 GGTTTTAG
1 GG-TTTAG
25805669 GGTTTAG
1 GGTTTAG
25805676 GGTTTAG
1 GGTTTAG
25805683 GGT
1 GGT
25805686 AAGTGTTCCG
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
7 29 0.81
8 7 0.19
ACGTcount: A:0.15, C:0.00, G:0.41, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:25805668 original size:22 final size:22
Alignment explanation
Indices: 25805642--25805685 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
25805632 CATACAAAGG
25805642 TTTAGGGTTTAGGATTTAGGGT
1 TTTAGGGTTTAGGATTTAGGGT
*
25805664 TTTAGGGTTTAGGGTTTAGGGT
1 TTTAGGGTTTAGGATTTAGGGT
25805686 AAGTGTTCCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (22 bp):
TTTAGGGTTTAGGATTTAGGGT
Found at i:25805669 original size:15 final size:15
Alignment explanation
Indices: 25805642--25805680 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
25805632 CATACAAAGG
25805642 TTTAGGG-TTTAGGA
1 TTTAGGGTTTTAGGA
*
25805656 TTTAGGGTTTTAGGG
1 TTTAGGGTTTTAGGA
25805671 TTTAGGGTTT
1 TTTAGGGTTT
25805681 AGGGTAAGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 7 0.30
15 16 0.70
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.49
Consensus pattern (15 bp):
TTTAGGGTTTTAGGA
Found at i:25807880 original size:237 final size:236
Alignment explanation
Indices: 25807460--25807934 Score: 808
Period size: 237 Copynumber: 2.0 Consensus size: 236
25807450 TTTCTTGTCC
*
25807460 ACACGGCCACGTGACTGGTCGTATGTCCCCTTTAGGTTTTTAAAGTTGCATTTCGAGAGTGACAC
1 ACACAGCCACGTGACTGGTCGTATGTCCCCTTTAGGTTTTTAAAGTTGCATTTCGAGAGTGACAC
*
25807525 GGCCTGGCACACGGGTGTGTGACTTGGCTGTGTAACCCAAGTCAGAGAGTTACACGGGCACGGAC
66 GGCCTGGCACACGGGTGTGTGACTTGGCTGTGTAA-CCAAGTCAGAGAGTTACACGGGCACGAAC
*
25807590 ACGGGCTGGGATATGGTCGTGTGTCCCTACTTTGAACGCCCACACGGCCTGAGACACAAGCATGT
130 ACGGGCTGGGATATGGTCGTGTGTCCCTACTTTGAACACCCACACGGCCTGAGACACAAGCATGT
*
25807655 GTCTCAATGTTGTGAGTCATAAGGCTGTGTGATCCCTGTAGT
195 GTCTCAATGTTATGAGTCATAAGGCTGTGTGATCCCTGTAGT
25807697 ACACAGCCACGTGACATGGTCGTATGTCCCCTTTAGGTTTTTAAAGGTTGCATTTCGAGAGTGAC
1 ACACAGCCACGTGAC-TGGTCGTATGTCCCCTTTAGGTTTTTAAA-GTTGCATTTCGAGAGTGAC
*
25807762 ATGGCCTGGCACACGGGTGTGTGACTTGGCTGTGTAA-CAAGTCAGAGAGTTACACGGGCACGAA
64 ACGGCCTGGCACACGGGTGTGTGACTTGGCTGTGTAACCAAGTCAGAGAGTTACACGGGCACGAA
* * *
25807826 CACGGGCTGGGATATTGTCGTGTGTCCCTACTTTGAATACCCACACGGCCTGAGACACGAGCATG
129 CACGGGCTGGGATATGGTCGTGTGTCCCTACTTTGAACACCCACACGGCCTGAGACACAAGCATG
* * * *
25807891 TGTCTTAGTGTTATGAGTCATAAGGTTGTGTGATCCTTGTAGT
194 TGTCTCAATGTTATGAGTCATAAGGCTGTGTGATCCCTGTAGT
25807934 A
1 A
25807935 ATAATTTTTC
Statistics
Matches: 224, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
237 140 0.62
238 29 0.13
239 55 0.25
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (236 bp):
ACACAGCCACGTGACTGGTCGTATGTCCCCTTTAGGTTTTTAAAGTTGCATTTCGAGAGTGACAC
GGCCTGGCACACGGGTGTGTGACTTGGCTGTGTAACCAAGTCAGAGAGTTACACGGGCACGAACA
CGGGCTGGGATATGGTCGTGTGTCCCTACTTTGAACACCCACACGGCCTGAGACACAAGCATGTG
TCTCAATGTTATGAGTCATAAGGCTGTGTGATCCCTGTAGT
Found at i:25809245 original size:17 final size:16
Alignment explanation
Indices: 25809225--25809268 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 16
25809215 TTCCATGCCA
*
25809225 GAAAAAAGTGTAGAAGT
1 GAAAAAAAT-TAGAAGT
*
25809242 GAAAAAAATTCGAAGT
1 GAAAAAAATTAGAAGT
25809258 GAAAAACAATT
1 GAAAAA-AATT
25809269 TTGAAAAGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 12 0.50
17 12 0.50
ACGTcount: A:0.57, C:0.05, G:0.20, T:0.18
Consensus pattern (16 bp):
GAAAAAAATTAGAAGT
Found at i:25809256 original size:16 final size:17
Alignment explanation
Indices: 25809237--25809268 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
25809227 AAAAAGTGTA
25809237 GAAGTGAAAAA-AATTC
1 GAAGTGAAAAACAATTC
25809253 GAAGTGAAAAACAATT
1 GAAGTGAAAAACAATT
25809269 TTGAAAAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.56, C:0.06, G:0.19, T:0.19
Consensus pattern (17 bp):
GAAGTGAAAAACAATTC
Found at i:25809431 original size:21 final size:18
Alignment explanation
Indices: 25809381--25809443 Score: 56
Period size: 18 Copynumber: 3.3 Consensus size: 18
25809371 TAGCATGAAT
*
25809381 AAGAAAAAGAAATT-GAAA
1 AAGAAAAAG-AGTTAGAAA
25809399 AAGAAAAAGAGTATGAGAGAA
1 AAGAAAAAGAGT-T-AGA-AA
**
25809420 AAGAAATTGAGTTAGAAA
1 AAGAAAAAGAGTTAGAAA
25809438 AAGAAA
1 AAGAAA
25809444 GTGAACATGA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
17 2 0.05
18 18 0.47
19 3 0.08
20 3 0.08
21 12 0.32
ACGTcount: A:0.65, C:0.00, G:0.22, T:0.13
Consensus pattern (18 bp):
AAGAAAAAGAGTTAGAAA
Found at i:25817124 original size:17 final size:18
Alignment explanation
Indices: 25817089--25817124 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
25817079 CCCAAAATCT
*
25817089 ACATGCCCGTGTAGGCCC
1 ACATGCCCGTATAGGCCC
25817107 ACATGCCCGTAT-GGCCC
1 ACATGCCCGTATAGGCCC
25817124 A
1 A
25817125 TAAGCCCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.19, C:0.39, G:0.25, T:0.17
Consensus pattern (18 bp):
ACATGCCCGTATAGGCCC
Found at i:25821273 original size:47 final size:47
Alignment explanation
Indices: 25821150--25821276 Score: 184
Period size: 47 Copynumber: 2.7 Consensus size: 47
25821140 ATAATCGATT
* *
25821150 AGTACCTATACCATGGCCCATAGCCAAATAAAGGTAATTTATCTCAG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCTCAG
* *
25821197 AGTACCTATACCATGGCCCATATCCAAATCAAGGTAACTTATC-CTGG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCTC-AG
* *
25821244 AGTACCTATAGCATGGCCCGTAGCCAAATCAAG
1 AGTACCTATACCATGGCCCATAGCCAAATCAAG
25821277 CTATCTCCTT
Statistics
Matches: 72, Mismatches: 7, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 1 0.01
47 71 0.99
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.24
Consensus pattern (47 bp):
AGTACCTATACCATGGCCCATAGCCAAATCAAGGTAACTTATCTCAG
Found at i:25828643 original size:40 final size:40
Alignment explanation
Indices: 25828533--25828650 Score: 168
Period size: 40 Copynumber: 3.0 Consensus size: 40
25828523 ACCACAAGCT
* * * *
25828533 CAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCA
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCA
*
25828573 CGAA-TGCCTTTGGGTCTTAGCCCGGATATATCAACTTGCA
1 C-AATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCA
25828613 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAA-TTGC
1 CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGC
25828651 TCATGCACAC
Statistics
Matches: 70, Mismatches: 6, Indels: 5
0.86 0.07 0.06
Matches are distributed among these distances:
39 6 0.09
40 62 0.89
41 2 0.03
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (40 bp):
CAATTGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCA
Found at i:25836568 original size:40 final size:39
Alignment explanation
Indices: 25836523--25836676 Score: 220
Period size: 40 Copynumber: 3.9 Consensus size: 39
25836513 CAAGCTCAAT
* * * *
25836523 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCAC-AA
25836563 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAA
*
25836602 TTTCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAA
1 -TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCAC-AA
*
25836643 TGCCTTCGGGTTTTAGCCCGGATATATCAA-TTGC
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGC
25836677 TCATGCACAC
Statistics
Matches: 105, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
39 6 0.06
40 97 0.92
41 2 0.02
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (39 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAA
Found at i:25836623 original size:80 final size:79
Alignment explanation
Indices: 25836519--25836676 Score: 244
Period size: 80 Copynumber: 2.0 Consensus size: 79
25836509 ACCACAAGCT
* *
25836519 CAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAATGCCTTCGGGTCTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
25836584 ATATATCAACTTGCA
66 ATATATCAA-TTGCA
* * * * *
25836599 CAATTTCCTTCGGGTCTTAGCCCGGATATATCAACTTGCACAAATGCCTTCGGGTTTTAGCCCGG
1 CAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
25836664 ATATATCAATTGC
66 ATATATCAATTGC
25836677 TCATGCACAC
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
79 4 0.06
80 67 0.94
ACGTcount: A:0.23, C:0.27, G:0.21, T:0.29
Consensus pattern (79 bp):
CAATTGCCTTCGGGTCTTAACCCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGG
ATATATCAATTGCA
Found at i:25841159 original size:17 final size:18
Alignment explanation
Indices: 25841137--25841170 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
25841127 AAATTGGACC
25841137 GTGTGGGCT-ACACGGGT
1 GTGTGGGCTGACACGGGT
25841154 GTGTGGGCTGACACGGG
1 GTGTGGGCTGACACGGG
25841171 CAAGCGACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.12, C:0.18, G:0.50, T:0.21
Consensus pattern (18 bp):
GTGTGGGCTGACACGGGT
Found at i:25848047 original size:18 final size:18
Alignment explanation
Indices: 25848020--25848054 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
25848010 GCCGTGTAGG
*
25848020 CCACATGGGCGTGTGGGC
1 CCACACGGGCGTGTGGGC
25848038 CCACACGGGCGTGTGGG
1 CCACACGGGCGTGTGGG
25848055 ATTCTGGGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.29, G:0.46, T:0.14
Consensus pattern (18 bp):
CCACACGGGCGTGTGGGC
Found at i:25857640 original size:79 final size:81
Alignment explanation
Indices: 25857531--25857713 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
25857521 TACTCGTTCA
* *
25857531 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGG
* *
25857594 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
25857611 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
* *
25857674 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
25857690 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
25857714 CATCATGCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:25857713 original size:40 final size:40
Alignment explanation
Indices: 25857529--25857713 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
25857519 GCTACTCGTT
* *
25857529 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25857569 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
25857609 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
25857648 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
25857689 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
25857714 CATCATGCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 79 0.64
41 12 0.10
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:25862123 original size:27 final size:27
Alignment explanation
Indices: 25861998--25862284 Score: 252
Period size: 27 Copynumber: 10.6 Consensus size: 27
25861988 TTAGTTTACG
* *
25861998 AAATCACCAAAATACCCCT-AGTTTGTA
1 AAATTACCAAAATACCCTTGA-TTTGTA
* * **
25862025 AAATTACCAAAATACCCCTGGTTTACA
1 AAATTACCAAAATACCCTTGATTTGTA
*
25862052 AAATTACCAAAATACCCCTGATTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*
25862079 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
*
25862106 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGATTTGTA
* ** *
25862133 AAATTACCGAAATACCCTCAATTTGCA
1 AAATTACCAAAATACCCTTGATTTGTA
** **
25862160 AAATTACTGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
** * *
25862187 AAATTACTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTTGATTTGTA
* ** *
25862214 AAATTACCAAAGTACCCCCGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
* **** * *
25862241 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTTGATTTGTA
**
25862268 AAATTATTAAAATACCC
1 AAATTACCAAAATACCC
25862285 CTGCAGGGTA
Statistics
Matches: 220, Mismatches: 39, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
27 220 1.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGATTTGTA
Found at i:25862138 original size:81 final size:81
Alignment explanation
Indices: 25861998--25862248 Score: 279
Period size: 81 Copynumber: 3.1 Consensus size: 81
25861988 TTAGTTTACG
* * * * **
25861998 AAATCACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGGTTTACAAAATTACCAAA
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
25862063 ATACCCCTGATTTGTA
66 ATACCCCTGATTTGTA
* * *
25862079 AAATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTGAAATTACCGAA
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
* *
25862144 ATA-CCCTCAATTTGCA
66 ATACCCCT-GATTTGTA
** * * ** * *
25862160 AAATTACTGAAATACCCTCAATTTGTAAAATTACTGAAATACCCTCGACTTGTAAAATTACCAAA
1 AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
* * *
25862225 GTACCCCCGATTTATA
66 ATACCCCTGATTTGTA
*
25862241 GAATTACC
1 AAATTACC
25862249 GTTTTACCCT
Statistics
Matches: 139, Mismatches: 29, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
80 4 0.03
81 132 0.95
82 3 0.02
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCTTAGTTTGTAAAATTACCAAAATACCCTTGATTTGTAAAATTACCAAA
ATACCCCTGATTTGTA
Found at i:25862306 original size:27 final size:27
Alignment explanation
Indices: 25862277--25862606 Score: 405
Period size: 27 Copynumber: 12.3 Consensus size: 27
25862267 AAAATTATTA
* * *
25862277 AAATACCCCTGCAGGGTAGAAATATCA
1 AAATACCCCTGTAGGGTAGAAATACCG
* * *
25862304 AAAT-CCCTTATAGGGTAGAAATACCA
1 AAATACCCCTGTAGGGTAGAAATACCG
*
25862330 AAATACCCCTGTAGGGTA-AAATTACTG
1 AAATACCCCTGTAGGGTAGAAA-TACCG
*
25862357 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* *
25862384 AAATACCCCTGTAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAAATACCG
* * *
25862411 AAATACCCCTATAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAAATACCG
25862438 AAATA-CCCTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
*
25862464 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* * *
25862491 AAATACCCCTATAGGGTAGAATTACTG
1 AAATACCCCTGTAGGGTAGAAATACCG
* *
25862518 AAATACCCCTGTAGGGTAGAATTACCA
1 AAATACCCCTGTAGGGTAGAAATACCG
* *
25862545 AAATACCCTTATAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
* * *
25862572 AAATACCCATATAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAAATACCG
*
25862599 AGATACCC
1 AAATACCC
25862607 TCGTGGGGTA
Statistics
Matches: 265, Mismatches: 34, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
26 48 0.18
27 214 0.81
28 3 0.01
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.22
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAAATACCG
Found at i:25862473 original size:107 final size:107
Alignment explanation
Indices: 25862277--25862623 Score: 486
Period size: 107 Copynumber: 3.2 Consensus size: 107
25862267 AAAATTATTA
* * * * *
25862277 AAATACCCCTGCAGGGTAGAAATA-TCAAA-ATCCCTTATAGGGTAGAAATACCAAAATACCCCT
1 AAATACCCCTGTAGGGTAGAATTACTGAAATA-CCCCTATAGGGTAGAATTACCAAAATA-CCCT
*
25862340 GTAGGGTA-AAATTACTGAAATACCCTTGTAGGGTAGAAATACCG
64 GTAGGGTAGAAA-TACCGAAATACCCTTGTAGGGTAGAAATACCG
25862384 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCTGT
1 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCTGT
25862449 AGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCG
66 AGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCG
* * *
25862491 AAATACCCCTATAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTA
1 AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCC-TG
* * *
25862556 TAGGGTAGAAATACCGAAATACCCATATAGGGTAGAATTACCG
65 TAGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCG
* * *
25862599 AGATA-CCCTCGTGGGGTAAAATTAC
1 AAATACCCCT-GTAGGGTAGAATTAC
25862624 CATTTTGCCC
Statistics
Matches: 219, Mismatches: 16, Indels: 9
0.90 0.07 0.04
Matches are distributed among these distances:
107 129 0.59
108 89 0.41
109 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.23
Consensus pattern (107 bp):
AAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATTACCAAAATACCCTGT
AGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCG
Found at i:25862622 original size:81 final size:81
Alignment explanation
Indices: 25862289--25862625 Score: 457
Period size: 81 Copynumber: 4.2 Consensus size: 81
25862279 ATACCCCTGC
* * * *
25862289 AGGGTAGAAATATCAAAAT-CCCTTATAGGGTAGAAATACCAAAATACCCCTGTAGGGTAAAATT
1 AGGGTAGAAATACCAAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
* *
25862353 ACTGAAATACCCTTGT
66 ACCGAAATACCCTCGT
* * * * *
25862369 AGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTATAGGGTAGAATT
1 AGGGTAGAAATACCAAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
*
25862434 ACCAAAATACCCT-GT
66 ACCGAAATACCCTCGT
* *
25862449 AGGGTAGAAATACCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
1 AGGGTAGAAATACCAAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
*
25862514 ACTGAAATACCC-CTGT
66 ACCGAAATACCCTC-GT
* *
25862530 AGGGTAGAATTACCAAAATACCCTTATAGGGTAGAAATACCGAAATACCCATATAGGGTAGAATT
1 AGGGTAGAAATACCAAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
*
25862595 ACCGAGATACCCTCGT
66 ACCGAAATACCCTCGT
*
25862611 GGGGTA-AAATTACCA
1 AGGGTAGAAA-TACCA
25862626 TTTTGCCCCT
Statistics
Matches: 228, Mismatches: 24, Indels: 9
0.87 0.09 0.03
Matches are distributed among these distances:
80 93 0.41
81 134 0.59
82 1 0.00
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.23
Consensus pattern (81 bp):
AGGGTAGAAATACCAAAATACCCTTATAGGGTAGAAATACCGAAATACCCCTATAGGGTAGAATT
ACCGAAATACCCTCGT
Found at i:25862955 original size:20 final size:20
Alignment explanation
Indices: 25862908--25862955 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
25862898 CGAAGGCTGT
*
25862908 GTACCGTTATTGTAGGCTTC
1 GTACCGATATTGTAGGCTTC
* *
25862928 GTATCGATATTGTGGGCTTC
1 GTACCGATATTGTAGGCTTC
*
25862948 GTGCCGAT
1 GTACCGAT
25862956 TATAGACTCG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.15, C:0.19, G:0.29, T:0.38
Consensus pattern (20 bp):
GTACCGATATTGTAGGCTTC
Found at i:25863218 original size:27 final size:27
Alignment explanation
Indices: 25863188--25863291 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 27
25863178 ATTCTGTTAA
* *
25863188 GTGGCTTTGCCACATTATCTATTTCTG
1 GTGGCTCTGCCACAATATCTATTTCTG
* *
25863215 GTGGCTATGCCACAAATATCT-GTTCTG
1 GTGGCTCTGCCAC-AATATCTATTTCTG
* * *
25863242 GTGGCTCTGACACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTATTTCTG
* *
25863269 GTGACTCTGTCACAATATCTATT
1 GTGGCTCTGCCACAATATCTATT
25863292 CTAGCAGCCA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
26 7 0.11
27 51 0.80
28 6 0.09
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTATTTCTG
Found at i:25863455 original size:25 final size:25
Alignment explanation
Indices: 25863420--25863481 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 25
25863410 TCATATTCTA
* * *
25863420 ATTCTAATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTCACCTAATACTG
* *
25863445 GTTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGTCACCTAATACTG
25863470 ATTCTGATTCTG
1 ATTCTGATTCTG
25863482 ATTCTGTCTC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.19, C:0.21, G:0.15, T:0.45
Consensus pattern (25 bp):
ATTCTGATTCTGTCACCTAATACTG
Found at i:25863473 original size:6 final size:6
Alignment explanation
Indices: 25863464--25863532 Score: 79
Period size: 6 Copynumber: 11.3 Consensus size: 6
25863454 CTGTCACCTA
*
25863464 ATTCTG ATTCTG ATTCTG ATTCTG -TCTCTTG ATTCTG ATTCTG ATTCTC
1 ATTCTG ATTCTG ATTCTG ATTCTG AT-TC-TG ATTCTG ATTCTG ATTCTG
*
25863513 ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
25863533 AATGTTTCTT
Statistics
Matches: 54, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
5 2 0.04
6 46 0.85
7 5 0.09
8 1 0.02
ACGTcount: A:0.16, C:0.17, G:0.14, T:0.52
Consensus pattern (6 bp):
ATTCTG
Found at i:25863499 original size:31 final size:31
Alignment explanation
Indices: 25863436--25863511 Score: 107
Period size: 31 Copynumber: 2.5 Consensus size: 31
25863426 ATTCTGTTAC
* *
25863436 CTGATACTGGTTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATT
* * *
25863467 CTGATTCTGATTCTGATTCTGTCTCTTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATT
25863498 CTGATTCTGATTCT
1 CTGATTCTGATTCT
25863512 CATTTTGATT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.47
Consensus pattern (31 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATT
Found at i:25881902 original size:27 final size:26
Alignment explanation
Indices: 25881872--25882048 Score: 138
Period size: 27 Copynumber: 6.5 Consensus size: 26
25881862 AAATTGTACA
* *
25881872 GCACTAAGTGTGCGATTCTACTTTGTT
1 GCACTAAGTGTGCGATT-GACTATGTT
* * *
25881899 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCG-ATTGACTATGTT
* **
25881926 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCG-ATTGACTATGTT
*
25881953 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGA--TTGACTATGTT
* * *
25881981 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTT
* * * *
25882008 GCACTAAATGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTT
*
25882035 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
25882049 GGCTCAATAT
Statistics
Matches: 124, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTT
Found at i:25881995 original size:55 final size:54
Alignment explanation
Indices: 25881899--25882048 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 54
25881889 CTACTTTGTT
** *
25881899 GCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGAATATGTA-GCACTAAGTGTGCGAATTGACCACGCG
* * ** *
25881953 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAG-TTGAATATGTAGCACTAAGTGTGCGAATTGACCACGCG
* * * *
25882008 GCACTAAATGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
25882049 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 37 0.45
55 44 0.54
56 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAATTGACCACGCG
Found at i:25882012 original size:82 final size:81
Alignment explanation
Indices: 25881872--25882027 Score: 199
Period size: 82 Copynumber: 1.9 Consensus size: 81
25881862 AAATTGTACA
* * * *
25881872 GCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
25881937 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
25881953 GCACTAAGTGTGCGAGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAA
1 GCACTAAGTGTGCGA-TTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAA
*
25882016 TGTGCGAGTTGA
63 TGTGCGAATTGA
25882028 TTATATAGCA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
81 17 0.27
82 47 0.73
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAATGT
GCGAATTGACCATGCG
Found at i:25882039 original size:82 final size:81
Alignment explanation
Indices: 25881868--25882048 Score: 195
Period size: 82 Copynumber: 2.2 Consensus size: 81
25881858 GATTAAATTG
* * *
25881868 TACAGCACTAAGTGTGCGATTCTACTTTGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
25881933 GTGTGCGAATTGACCA
66 ATGTGCGAATTGACCA
* * ** *
25881949 TGCGGCACTAAGTGTGCGAGTT-TGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCAC
1 TACAGCACTAAGTGTGCGA-TTCT-ACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCAC
* **
25882012 TAAATGTGCGAGTTGATTA
63 TAAATGTGCGAATTGACCA
* *
25882031 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25882049 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
81 19 0.23
82 62 0.77
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCTACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
ATGTGCGAATTGACCA
Found at i:25883088 original size:23 final size:22
Alignment explanation
Indices: 25883046--25883088 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
25883036 TGGTACTTGA
25883046 TTATGCATATGGTATATGTGCT
1 TTATGCATATGGTATATGTGCT
25883068 TTATG-ATATGCGATATATGTG
1 TTATGCATATG-G-TATATGTG
25883089 GTAATTTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 6 0.32
23 8 0.42
ACGTcount: A:0.26, C:0.07, G:0.23, T:0.44
Consensus pattern (22 bp):
TTATGCATATGGTATATGTGCT
Found at i:25892259 original size:53 final size:53
Alignment explanation
Indices: 25892141--25892260 Score: 134
Period size: 53 Copynumber: 2.3 Consensus size: 53
25892131 AAACTACTAT
* * * * * * *
25892141 AAGGCAAAGATCCCATGTAAGACCATGCCAAGGCATGGCAATCGTGAGTTCAT
1 AAGGCAAAGGTACCACGTAAGACCATGCCAAGACATGGCAATCGTAAGTTAAA
* * *
25892194 AAGGCAAGGGTACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTAAA
1 AAGGCAAAGGTACCACGTAAGACCATGCCAAGACATGGCAATCGTAAG-TTAAA
25892248 AAGG-AAAGGTACC
1 AAGGCAAAGGTACC
25892261 CATGTATCCT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 48 0.87
54 7 0.13
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (53 bp):
AAGGCAAAGGTACCACGTAAGACCATGCCAAGACATGGCAATCGTAAGTTAAA
Found at i:25895816 original size:29 final size:27
Alignment explanation
Indices: 25895742--25895822 Score: 83
Period size: 27 Copynumber: 2.9 Consensus size: 27
25895732 CGAGGCTGCT
* *
25895742 AGATATTGTGACGAAGTCACCAGATAC
1 AGATATTGTGGCGAAGCCACCAGATAC
* *
25895769 AGATATTGTGGCTAGGCCACCAGA-AC
1 AGATATTGTGGCGAAGCCACCAGATAC
*
25895795 AGATATATATGTGGCGAAGCCATCAGAT
1 AG--ATAT-TGTGGCGAAGCCACCAGAT
25895823 TGCAGCGAGG
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
26 4 0.09
27 20 0.47
28 4 0.09
29 15 0.35
ACGTcount: A:0.35, C:0.19, G:0.25, T:0.22
Consensus pattern (27 bp):
AGATATTGTGGCGAAGCCACCAGATAC
Found at i:25896690 original size:27 final size:27
Alignment explanation
Indices: 25896540--25896690 Score: 176
Period size: 27 Copynumber: 5.6 Consensus size: 27
25896530 GGCAAAATGC
* * * *
25896540 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
*
25896567 TAATTCAACCCTACAGGGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* * * *
25896594 TATTTATACCCTACAAGGGTATTTCAG
1 TAATTCTACCCTACAGGGGTATTTCGG
* *
25896621 TAATTCTATCCTACAGAGGTATTTCGG
1 TAATTCTACCCTACAGGGGTATTTCGG
* **
25896648 TAATTCTACTCTACAGGGGTATTTCAA
1 TAATTCTACCCTACAGGGGTATTTCGG
25896675 TAATTCTACCCTACAG
1 TAATTCTACCCTACAG
25896691 ACCCATTGGG
Statistics
Matches: 102, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.34
Consensus pattern (27 bp):
TAATTCTACCCTACAGGGGTATTTCGG
Found at i:25902043 original size:29 final size:27
Alignment explanation
Indices: 25901968--25902049 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
25901958 GCGAGGCTTC
* *
25901968 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGGCGAAGCCACCAGATA
* *
25901995 CAGATATTGTGGCTAGGCCACCAGA-A
1 CAGATATTGTGGCGAAGCCACCAGATA
25902021 CAGATATATATGTGGCGAAGCCACCAGAT
1 CAG--ATAT-TGTGGCGAAGCCACCAGAT
25902050 TGCAGCGAGG
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.09
27 21 0.47
28 4 0.09
29 16 0.36
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (27 bp):
CAGATATTGTGGCGAAGCCACCAGATA
Found at i:25902068 original size:69 final size:67
Alignment explanation
Indices: 25901995--25902132 Score: 195
Period size: 67 Copynumber: 2.0 Consensus size: 67
25901985 TCACCAGATA
* * * * *
25901995 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATGTGGCGAAGCCACCAGATTGCAGCGAGG
1 CAGATATTGTGACGAAGCCACCAAAACAG--ATATATGTGGCGAAGCCACCAGATTGCAGCAAGG
25902060 CTGC
64 CTGC
* *
25902064 CAGATATTGTGACGAAGTCACCAAAACAGATATATGTGGCGAGGCCACCAGATTGCAGCAAGGCT
1 CAGATATTGTGACGAAGCCACCAAAACAGATATATGTGGCGAAGCCACCAGATTGCAGCAAGGCT
25902129 GC
66 GC
25902131 CA
1 CA
25902133 AAACGCTTCC
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
67 38 0.61
69 24 0.39
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAAAACAGATATATGTGGCGAAGCCACCAGATTGCAGCAAGGCT
GC
Found at i:25902741 original size:26 final size:27
Alignment explanation
Indices: 25902712--25902765 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
25902702 TCACACAAGT
*
25902712 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
25902738 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
25902765 T
1 T
25902766 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:25902796 original size:27 final size:27
Alignment explanation
Indices: 25902768--25902965 Score: 209
Period size: 27 Copynumber: 7.3 Consensus size: 27
25902758 GGCAAAATGG
* * * *
25902768 TAATTTTACCCCACAAGGGTATCTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
25902795 TAATTCTACCCTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATTTCGA
* *
25902822 TATTTCTAACCTACAAGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
25902849 TAATTCTATCCTACAGGGGTATTTTGA
1 TAATTCTACCCTACAAGGGTATTTCGA
*
25902876 TAATTCTACCCTACAAGGGTATTTCAA
1 TAATTCTACCCTACAAGGGTATTTCGA
* * *
25902903 TAATTTTACCCTACAGGGGTATTACGA
1 TAATTCTACCCTACAAGGGTATTTCGA
** *
25902930 TAATTCTACTTTA-AAGGGGTATTTCGG
1 TAATTCTACCCTACAA-GGGTATTTCGA
25902957 TAATTCTAC
1 TAATTCTAC
25902966 AACTTATCCA
Statistics
Matches: 142, Mismatches: 28, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.01
27 141 0.99
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (27 bp):
TAATTCTACCCTACAAGGGTATTTCGA
Found at i:25910409 original size:22 final size:22
Alignment explanation
Indices: 25910384--25910448 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 22
25910374 GGCCTTTAGC
*
25910384 CATCCTGTCTACGATGTTGAGT
1 CATCCTGTCTACGACGTTGAGT
* **
25910406 CATCCTGTTTGTGACGTTGAGT
1 CATCCTGTCTACGACGTTGAGT
*
25910428 CATCCTGTCTACGGCGTTGAG
1 CATCCTGTCTACGACGTTGAG
25910449 CCGTTCTGTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.15, C:0.23, G:0.26, T:0.35
Consensus pattern (22 bp):
CATCCTGTCTACGACGTTGAGT
Found at i:25913827 original size:22 final size:21
Alignment explanation
Indices: 25913787--25913838 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 21
25913777 GGTCTTTAGC
* *
25913787 CATCCTGTCTATAATGTTGAG
1 CATCCTGTCTACAACGTTGAG
*
25913808 TCATCCTGTCTACAGCGTTGAG
1 -CATCCTGTCTACAACGTTGAG
25913830 CTATCCTGT
1 C-ATCCTGT
25913839 TGACTAGGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 1 0.04
22 25 0.96
ACGTcount: A:0.19, C:0.25, G:0.19, T:0.37
Consensus pattern (21 bp):
CATCCTGTCTACAACGTTGAG
Found at i:25915069 original size:19 final size:19
Alignment explanation
Indices: 25915045--25915081 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
25915035 CTTTTAAAAG
*
25915045 TTGAAAATTTTCTATGTTT
1 TTGAAAATTTTATATGTTT
*
25915064 TTGAAACTTTTATATGTT
1 TTGAAAATTTTATATGTT
25915082 ATCAGATTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.27, C:0.05, G:0.11, T:0.57
Consensus pattern (19 bp):
TTGAAAATTTTATATGTTT
Found at i:25915634 original size:34 final size:34
Alignment explanation
Indices: 25915591--25915656 Score: 132
Period size: 34 Copynumber: 1.9 Consensus size: 34
25915581 CTCGTTTTCC
25915591 TTAATCTAAAATATCACATTTAGCTTAACTATCT
1 TTAATCTAAAATATCACATTTAGCTTAACTATCT
25915625 TTAATCTAAAATATCACATTTAGCTTAACTAT
1 TTAATCTAAAATATCACATTTAGCTTAACTAT
25915657 TAGTCACATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.03, T:0.41
Consensus pattern (34 bp):
TTAATCTAAAATATCACATTTAGCTTAACTATCT
Found at i:25920503 original size:91 final size:91
Alignment explanation
Indices: 25920348--25920528 Score: 353
Period size: 91 Copynumber: 2.0 Consensus size: 91
25920338 GGTCTAGACA
25920348 CACGCCTGTGTGTCTGCCCGTGTGGACAAAAACAAGGCTATCTACCAAGCCTTTTTGCCACCCTC
1 CACGCCTGTGTGTCTGCCCGTGTGGACAAAAACAAGGCTATCTACCAAGCCTTTTTGCCACCCTC
25920413 ACTTGTACCAACCTACACAACATCAC
66 ACTTGTACCAACCTACACAACATCAC
*
25920439 CACGCCTGTGTGTCTGCCCGTGTGGACAAAAACAAGGCTATCTACCAAGCCTTTTTGCCCCCCTC
1 CACGCCTGTGTGTCTGCCCGTGTGGACAAAAACAAGGCTATCTACCAAGCCTTTTTGCCACCCTC
25920504 ACTTGTACCAACCTACACAACATCA
66 ACTTGTACCAACCTACACAACATCA
25920529 AACATAACCA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 89 1.00
ACGTcount: A:0.26, C:0.35, G:0.15, T:0.23
Consensus pattern (91 bp):
CACGCCTGTGTGTCTGCCCGTGTGGACAAAAACAAGGCTATCTACCAAGCCTTTTTGCCACCCTC
ACTTGTACCAACCTACACAACATCAC
Found at i:25924986 original size:48 final size:48
Alignment explanation
Indices: 25924915--25925099 Score: 194
Period size: 48 Copynumber: 3.9 Consensus size: 48
25924905 TAAATTGCTA
* ** *
25924915 ATGCCATGTTCTAGACACAGTCTTACACTAGCTCACATGTCGAAGCTG
1 ATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCGAAGCTG
* * * * *
25924963 ATGCCATGTCCCAGACATGGTCTTACAGTAGCTCTCATCTC-AATGCCG
1 ATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCGAA-GCTG
* * * * *
25925011 ATGCCATGTTCCACACATGGTCTTACACTAGCTCTCATAACG-TGGTCG
1 ATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCGAAGCT-G
* *
25925059 ATGCCATGTTCCAAACATGGTCTTACACTAGCACACATATC
1 ATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATC
25925100 ACCCAAATGT
Statistics
Matches: 114, Mismatches: 20, Indels: 6
0.81 0.14 0.04
Matches are distributed among these distances:
47 3 0.03
48 111 0.97
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
ATGCCATGTTCCAGACATGGTCTTACACTAGCTCACATATCGAAGCTG
Found at i:25928300 original size:39 final size:39
Alignment explanation
Indices: 25928248--25928324 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
25928238 TATGGAAGTT
*
25928248 AGTTCATGGATGAATATGTTGAAATTTTGAAATTTATGA
1 AGTTCATGGATGAATATGTTGAAAATTTGAAATTTATGA
25928287 AGTTCATGGATGAATATGTTGAAAATTTGAAATTTATG
1 AGTTCATGGATGAATATGTTGAAAATTTGAAATTTATG
25928325 GTAGAAAATG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.36, C:0.03, G:0.21, T:0.40
Consensus pattern (39 bp):
AGTTCATGGATGAATATGTTGAAAATTTGAAATTTATGA
Found at i:25930764 original size:21 final size:21
Alignment explanation
Indices: 25930738--25930786 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
25930728 TGTAGCATGG
* *
25930738 GCGTGTCTTAGGGTCACGCGA
1 GCGTGTCTTAAGGTCACACGA
*
25930759 GCGTGTCTTAAGGTCACACGG
1 GCGTGTCTTAAGGTCACACGA
25930780 GCGTGTC
1 GCGTGTC
25930787 CTTGGACCAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.14, C:0.24, G:0.37, T:0.24
Consensus pattern (21 bp):
GCGTGTCTTAAGGTCACACGA
Found at i:25933767 original size:37 final size:37
Alignment explanation
Indices: 25933717--25933795 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
25933707 TTATTACGAA
* * *
25933717 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
25933754 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
25933791 GTCTT
1 GTCTT
25933796 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:25933983 original size:47 final size:47
Alignment explanation
Indices: 25933914--25934293 Score: 742
Period size: 47 Copynumber: 8.1 Consensus size: 47
25933904 CCCTTCGGGA
* *
25933914 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25933961 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25934008 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25934055 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25934102 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25934149 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25934196 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25934243 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
25934290 CTTA
1 CTTA
25934294 CTATCATTTC
Statistics
Matches: 331, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 331 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25936817 original size:40 final size:40
Alignment explanation
Indices: 25936760--25937101 Score: 487
Period size: 40 Copynumber: 8.6 Consensus size: 40
25936750 CCAGCATGAT
* *
25936760 TGCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
25936800 TGCTCTTCGGAACTTAGCCCGGATACATCGCTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
25936840 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
25936880 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
25936920 TGCTCTTCGGGACTTAGCCCAGATA-ATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
25936959 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * * *
25936999 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATA-TCACTAGCACGAA
* *
25937040 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AA
1 TGCTCTTCGGGA-CTTAGCCCGGATAT-ATCAC-TAGCACGAA
*
25937080 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
25937102 CATCATTCGA
Statistics
Matches: 273, Mismatches: 23, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
39 41 0.15
40 211 0.77
41 21 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:25937087 original size:159 final size:160
Alignment explanation
Indices: 25936761--25937098 Score: 479
Period size: 159 Copynumber: 2.1 Consensus size: 160
25936751 CAGCATGATT
* * *
25936761 GCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC
1 GCTCTTCGGGACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC
* * * *
25936826 ATCGCTAGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTCGGG
66 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGGG
*
25936891 ACTTAGCCCGGATATATCACTAGCACGAAT
131 ACTTAGCCCGGATATATCACTAGCACGAAA
* *
25936921 GCTCTTCGGGACTTAGCCCAGATA-ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATAT
1 GCTCTTCGGGACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC
* *
25936985 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATGC-CTTC-G
66 ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATA-TAACTAGCACCAATGCTCTTCGG
* *
25937048 GATCTTAGTCCGGATATGGTCACTTAGCAC-AAA
130 GA-CTTAGCCCGGATAT-ATCAC-TAGCACGAAA
25937081 GC-CTTCGGGACTTAGCCC
1 GCTCTTCGGGACTTAGCCC
25937099 GGACATCATT
Statistics
Matches: 160, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
158 3 0.02
159 109 0.68
160 42 0.26
161 6 0.04
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (160 bp):
GCTCTTCGGGACTTAGCCCAGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATAC
ATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATATATAACTAGCACCAATGCTCTTCGGG
ACTTAGCCCGGATATATCACTAGCACGAAA
Found at i:25938968 original size:37 final size:37
Alignment explanation
Indices: 25938918--25938996 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
25938908 TTATTACGAA
* *
25938918 GTCTTACCCGGACATAATCTTCACACGAAGT-TATCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCT-TCGG
*
25938955 GTCTTACCCGGACAAAATCCTCACACGTAGTCTTCGG
1 GTCTTACCCGGACAAAATCCTCACACGAAGTCTTCGG
25938992 GTCTT
1 GTCTT
25938997 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCTCACACGAAGTCTTCGG
Found at i:25939111 original size:49 final size:49
Alignment explanation
Indices: 25939037--25939624 Score: 986
Period size: 49 Copynumber: 12.1 Consensus size: 49
25939027 CCCTTCGGGA
* * * * * * *
25939037 CTTATCACAT-T-TATACACATTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
* * * * *
25939084 CCTGTCACATATATATACACTTCCACATTCATCACCTCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
25939133 CTTATCACATATA--TACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
25939180 CCTATCACATATAAATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
25939229 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
25939278 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
25939327 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
25939376 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
25939425 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
25939474 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
25939523 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
* *
25939572 CTTAACACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
25939621 CTTA
1 CTTA
25939625 CTATCATTTC
Statistics
Matches: 516, Mismatches: 21, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 52 0.10
48 1 0.00
49 463 0.90
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATGTACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:25943442 original size:43 final size:43
Alignment explanation
Indices: 25943371--25943539 Score: 175
Period size: 43 Copynumber: 4.0 Consensus size: 43
25943361 TAAGCTCGTA
* * * * *
25943371 CAATGCCA-TATCCCAAATATGGTCTTACATGTTATCACATAT
1 CAATGCCATTGTCCCAGACATGGTCTTACACGTAATCACATAT
* * * *
25943413 CAATGCCATTGTCCCAGACAGGGTTTTACACGTAATCGA-TTAA
1 CAATGCCATTGTCCCAGACATGGTCTTACACGTAATC-ACATAT
* *
25943456 CGATGCCAATGTCCCAGACATGGTCTTACACGTAATCACA-AT
1 CAATGCCATTGTCCCAGACATGGTCTTACACGTAATCACATAT
*
25943498 ACAATGCCAATT-TCCCAGACATGGTCTTACATGTAATCACAT
1 -CAATGCC-ATTGTCCCAGACATGGTCTTACACGTAATCACAT
25943540 CTCTGTAACC
Statistics
Matches: 103, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
42 10 0.10
43 90 0.87
44 3 0.03
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.28
Consensus pattern (43 bp):
CAATGCCATTGTCCCAGACATGGTCTTACACGTAATCACATAT
Found at i:25944056 original size:182 final size:182
Alignment explanation
Indices: 25943749--25944112 Score: 728
Period size: 182 Copynumber: 2.0 Consensus size: 182
25943739 ATTTATTGTC
25943749 TAAAATATGTGAATATGAGTGTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTT
1 TAAAATATGTGAATATGAGTGTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTT
25943814 AGTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTTAATCTATAAGGACCTATTAAT
66 AGTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTTAATCTATAAGGACCTATTAAT
25943879 GCATGTTATAAAAATGAGGGGTTTGCATGTCAAATTTCCATTTATAATAGGT
131 GCATGTTATAAAAATGAGGGGTTTGCATGTCAAATTTCCATTTATAATAGGT
25943931 TAAAATATGTGAATATGAGTGTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTT
1 TAAAATATGTGAATATGAGTGTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTT
25943996 AGTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTTAATCTATAAGGACCTATTAAT
66 AGTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTTAATCTATAAGGACCTATTAAT
25944061 GCATGTTATAAAAATGAGGGGTTTGCATGTCAAATTTCCATTTATAATAGGT
131 GCATGTTATAAAAATGAGGGGTTTGCATGTCAAATTTCCATTTATAATAGGT
25944113 AGTGGCCGGC
Statistics
Matches: 182, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
182 182 1.00
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (182 bp):
TAAAATATGTGAATATGAGTGTGTGAAAGTTTTAAGCTTCGATTTAGTTAATTGCATGTGAATTT
AGTTAATAGGACTTATGTGTGACACTTTTGAAATGTGATAGGTTAATCTATAAGGACCTATTAAT
GCATGTTATAAAAATGAGGGGTTTGCATGTCAAATTTCCATTTATAATAGGT
Found at i:25944536 original size:70 final size:72
Alignment explanation
Indices: 25944453--25944604 Score: 236
Period size: 75 Copynumber: 2.1 Consensus size: 72
25944443 TAGAAGAGAA
*
25944453 ATATGGTTGTTGTTCATGTTATTTGGATG-AG-AAATGGTTGTTAGGTGAAGTAGAGTCTAAAAA
1 ATAT-GTTGTTGTTCATGTTATTTGGATGAAGAAAATGGTAGTTAGGTGAAGTAGAGTCTAAAAA
25944516 ATGAGCAC
65 ATGAGCAC
*
25944524 ATATGTTGTTGTTCATGTTATTTGGATGAAAAAGAAAATGGTAGTTAGGTGAAGTAGAGTCTAAC
1 ATATGTTGTTGTTCATGTTATTTGGATG---AAGAAAATGGTAGTTAGGTGAAGTAGAGTCTAAA
25944589 AAATGAGCAC
63 AAATGAGCAC
25944599 ATATGT
1 ATATGT
25944605 GCATTAGTTG
Statistics
Matches: 74, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
70 24 0.32
71 4 0.05
74 2 0.03
75 44 0.59
ACGTcount: A:0.34, C:0.06, G:0.26, T:0.34
Consensus pattern (72 bp):
ATATGTTGTTGTTCATGTTATTTGGATGAAGAAAATGGTAGTTAGGTGAAGTAGAGTCTAAAAAA
TGAGCAC
Found at i:25946381 original size:47 final size:47
Alignment explanation
Indices: 25946321--25946565 Score: 346
Period size: 47 Copynumber: 5.2 Consensus size: 47
25946311 TTAGGATTTT
* ** * * * **
25946321 ATGTGATGGATGTGAATGTGTATATATGAGCTAAGGCCGAATGGAAA
1 ATGTGATGAATGTGAACATGCATATGTGTGCTAAGGCCGAATGGCCA
* *
25946368 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCAA
1 ATGTGATGAATGTGAACATGCATATGTGTGCTAAGGCCGAATGGCCA
*
25946415 ATGTGATGAATGTGAACATGCATTTGTGTGCTAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGCTAAGGCCGAATGGCCA
* * * *
25946462 ATGTGATGAGTGTGAACATGCATTTGTGTGATAAGACCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGCTAAGGCCGAATGGCCA
*
25946509 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGCTAAGGCCGAATGGCCA
25946556 ATGTGATGAA
1 ATGTGATGAA
25946566 CGTGGAAGTG
Statistics
Matches: 183, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 183 1.00
ACGTcount: A:0.31, C:0.11, G:0.30, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGCTAAGGCCGAATGGCCA
Found at i:25946442 original size:23 final size:23
Alignment explanation
Indices: 25946369--25946442 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
25946359 GAATGGAAAA
25946369 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
* * **
25946392 TGTG-TGCTAAGGCCG-A-ATGGCAAA
1 TGTGATG--AATG-TGAACAT-GCATT
25946416 TGTGATGAATGTGAACATGCATT
1 TGTGATGAATGTGAACATGCATT
25946439 TGTG
1 TGTG
25946443 TGCTAAGGCC
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
22 3 0.08
23 17 0.47
24 13 0.36
25 3 0.08
ACGTcount: A:0.28, C:0.11, G:0.30, T:0.31
Consensus pattern (23 bp):
TGTGATGAATGTGAACATGCATT
Found at i:25946595 original size:47 final size:47
Alignment explanation
Indices: 25946353--25946599 Score: 237
Period size: 47 Copynumber: 5.3 Consensus size: 47
25946343 TATATGAGCT
** * * * **
25946353 AAGGCCGAATGGAAAATGTGATGAATGTGAACATGCATTTGTGTGCT
1 AAGGCCGAATGGCCAATGTGATGAACGTGAACATGCATATATGTGAG
* * * * **
25946400 AAGGCCGAATGGCAAATGTGATGAATGTGAACATGCATTTGTGTGCT
1 AAGGCCGAATGGCCAATGTGATGAACGTGAACATGCATATATGTGAG
** * * *
25946447 AAGGCCGAATGGCCAATGTGATGAGTGTGAACATGCATTTGTGTGAT
1 AAGGCCGAATGGCCAATGTGATGAACGTGAACATGCATATATGTGAG
* * * *
25946494 AAGACCGAATGGCCAATGTGATGAATGTGAACATGCATATGTGTGAT
1 AAGGCCGAATGGCCAATGTGATGAACGTGAACATGCATATATGTGAG
* * *
25946541 AAGGCCGAATGGCCAATGTGATGAACGTGGAA-GTGTATATATGTGGGG
1 AAGGCCGAATGGCCAATGTGATGAACGT-GAACATGCATATATGT-GAG
25946589 AA-GCCGAATGG
1 AAGGCCGAATGG
25946600 TTAATGCGAA
Statistics
Matches: 184, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 178 0.97
48 6 0.03
ACGTcount: A:0.31, C:0.12, G:0.32, T:0.26
Consensus pattern (47 bp):
AAGGCCGAATGGCCAATGTGATGAACGTGAACATGCATATATGTGAG
Found at i:25958155 original size:47 final size:47
Alignment explanation
Indices: 25958104--25958208 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
25958094 TAGTATTAAT
*
25958104 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
25958151 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
25958198 AATGTGATAAG
1 TATGTGATAAG
25958209 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:25959836 original size:46 final size:46
Alignment explanation
Indices: 25959693--25959836 Score: 143
Period size: 46 Copynumber: 3.1 Consensus size: 46
25959683 CCCACCCATA
*
25959693 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCCAGTTACATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA--TACATC-CT
* * * * *
25959742 --CGAACTCGGACTCAACTCAACGAGTTCGAGCATTCGCATCCAT--A
1 AGTGAACTCGGACTCAACTCAACGAGTTCG-G-ATGCCCATACATCCT
* *
25959786 AGTGAACTCGGACTCAACTCAATGAGTTCGGATGCCCAAACATCCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
25959832 AGTGA
1 AGTGA
25959837 CATGTCACTT
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
44 8 0.11
45 1 0.01
46 31 0.41
47 30 0.39
48 1 0.01
49 5 0.07
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCATACATCCT
Found at i:25961787 original size:40 final size:40
Alignment explanation
Indices: 25961733--25962669 Score: 1734
Period size: 40 Copynumber: 23.4 Consensus size: 40
25961723 GGATGATAAC
* *
25961733 CGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
** *
25961772 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATC
1 -CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25961813 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25961853 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25961893 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25961933 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25961973 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962013 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962053 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962093 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962133 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962173 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962213 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962253 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962293 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962333 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962373 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962413 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962453 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962493 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
25962533 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
** *
25962573 CGGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
* *
25962613 CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTAACTATA-T
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
* * *
25962652 CCGGTTAAATCCCGAAGG
1 CGGGCTAAGTCCCGAAGG
25962670 TACTTGGTTT
Statistics
Matches: 877, Mismatches: 19, Indels: 3
0.98 0.02 0.00
Matches are distributed among these distances:
39 15 0.02
40 860 0.98
41 2 0.00
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATT
Found at i:25966784 original size:47 final size:47
Alignment explanation
Indices: 25966730--25966851 Score: 162
Period size: 46 Copynumber: 2.6 Consensus size: 47
25966720 TGTGTGCTAG
*
25966730 TGTAAGACATGTCTGGGACATGCATCGGCCACATT-ATGA-AA-TGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGG-C-CATTGA-GACAAGAGCCAA
* *
25966777 TGTAAGACATGTCTGGGACATGCATCGG-TATTGAGACAAGAGCCAT
1 TGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACAAGAGCCAA
25966823 TGTAAGACATGTCTGGGACATGCATCGGC
1 TGTAAGACATGTCTGGGACATGCATCGGC
25966852 TACAAGATGT
Statistics
Matches: 68, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
44 5 0.07
45 3 0.04
46 32 0.47
47 28 0.41
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.24
Consensus pattern (47 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCATTGAGACAAGAGCCAA
Found at i:25966979 original size:49 final size:49
Alignment explanation
Indices: 25966915--25967184 Score: 456
Period size: 49 Copynumber: 5.6 Consensus size: 49
25966905 TGTGAGATCT
25966915 AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGATAGTC
25966964 AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGATAGTC
25967013 AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGATAGTC
25967062 AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGATAGTC
1 AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGATAGTC
* ** * *
25967111 AGTGTAAGACCATGTTTGGGACATGGCATCGA-CTTGA--TGGATGAGCC
1 AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGAT-AGTC
*
25967158 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACCATGTTTGGGACATGGC
25967185 ATCAGCATTA
Statistics
Matches: 214, Mismatches: 6, Indels: 4
0.96 0.03 0.02
Matches are distributed among these distances:
46 4 0.02
47 29 0.14
48 3 0.01
49 178 0.83
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
AGTGTAAGACCATGTTTGGGACATGGCGTCGACCTCAATTTTGATAGTC
Found at i:25969946 original size:43 final size:43
Alignment explanation
Indices: 25969880--25970003 Score: 119
Period size: 43 Copynumber: 2.9 Consensus size: 43
25969870 TCTCATATCG
* * * *
25969880 ATGCCACTGTCCCAA-ACAGGGTCTTACACATAATC-GATTAACA
1 ATGCCAATGT-CCAAGACATGGTCTTACACATAATCACAAT-ACA
* *
25969923 ATGCCAAT-TATCAAGACATGGTCTTACACGTAATCACAATACA
1 ATGCCAATGT-CCAAGACATGGTCTTACACATAATCACAATACA
* **
25969966 ATGCCAATGTCCTAGACATGGTCTTACATGTAATCACA
1 ATGCCAATGTCCAAGACATGGTCTTACACATAATCACA
25970004 TTATTGTAAC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 4 0.06
43 61 0.90
44 3 0.04
ACGTcount: A:0.35, C:0.25, G:0.14, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCAAGACATGGTCTTACACATAATCACAATACA
Found at i:25975151 original size:29 final size:29
Alignment explanation
Indices: 25975087--25975152 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
25975077 ATTTCATTTA
* *
25975087 TTTCACAATTTAAACCCTCAATTTACACT
1 TTTCTCAATTTAAACCCTCAATATACACT
* * *
25975116 TTTCTCAATTTAATCCCT-AATATGCATT
1 TTTCTCAATTTAAACCCTCAATATACACT
25975144 TTTACTCAA
1 TTT-CTCAA
25975153 AATCACTTTA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
28 10 0.32
29 21 0.68
ACGTcount: A:0.32, C:0.24, G:0.02, T:0.42
Consensus pattern (29 bp):
TTTCTCAATTTAAACCCTCAATATACACT
Found at i:25982090 original size:26 final size:26
Alignment explanation
Indices: 25982052--25982128 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
25982042 ACCAACACAC
*
25982052 CAATATCGCAGCAAAGTTGCTAGTAA
1 CAATATCGCAGCAAAGTTGCCAGTAA
* *
25982078 TAATATCGTAGCAAAGTTGCCAGTAA
1 CAATATCGCAGCAAAGTTGCCAGTAA
* **
25982104 CAATAACGCAGCAAAACTGCCAGTA
1 CAATATCGCAGCAAAGTTGCCAGTA
25982129 TCAGTATATG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.21
Consensus pattern (26 bp):
CAATATCGCAGCAAAGTTGCCAGTAA
Found at i:25982315 original size:27 final size:27
Alignment explanation
Indices: 25982283--25982341 Score: 100
Period size: 27 Copynumber: 2.2 Consensus size: 27
25982273 AAATCAGTCA
*
25982283 TTACCCTCGAGGGGTATTTTGGTCATT
1 TTACCCTAGAGGGGTATTTTGGTCATT
*
25982310 TTACCCTATAGGGGTATTTTGGTCATT
1 TTACCCTAGAGGGGTATTTTGGTCATT
25982337 TTACC
1 TTACC
25982342 TGCCTTGGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.42
Consensus pattern (27 bp):
TTACCCTAGAGGGGTATTTTGGTCATT
Found at i:25986129 original size:28 final size:29
Alignment explanation
Indices: 25986055--25986129 Score: 89
Period size: 30 Copynumber: 2.6 Consensus size: 29
25986045 ATCTGGCCAT
* *
25986055 CCCAATCATATTCATATGGCCCTTTTAGA
1 CCCAATCACATTCATATGGCCCTGTTAGA
* *
25986084 CCCAAATCACATTTATATGGCCC-GTTAGG
1 CCC-AATCACATTCATATGGCCCTGTTAGA
*
25986113 CCCAGTCACATTCATAT
1 CCCAATCACATTCATAT
25986130 TCGTGCTCGC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
28 12 0.31
29 10 0.26
30 17 0.44
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (29 bp):
CCCAATCACATTCATATGGCCCTGTTAGA
Found at i:25997508 original size:27 final size:27
Alignment explanation
Indices: 25997477--25997654 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25997467 TAAATTGTAC
25997477 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25997504 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25997530 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25997558 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25997586 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25997613 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25997640 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25997655 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25997591 original size:82 final size:81
Alignment explanation
Indices: 25997478--25997633 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25997468 AAATTGTACA
* *
25997478 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25997542 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25997559 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25997624 TGCGAGTTGA
65 TGCGAATTGA
25997634 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25997645 original size:82 final size:81
Alignment explanation
Indices: 25997474--25997654 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25997464 GATTAAATTG
* *
25997474 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25997539 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25997555 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25997619 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25997637 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25997655 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26002265 original size:47 final size:47
Alignment explanation
Indices: 26002199--26002531 Score: 639
Period size: 47 Copynumber: 7.1 Consensus size: 47
26002189 GAAATGATAG
26002199 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26002246 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26002293 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26002340 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26002387 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26002434 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
26002481 TAAGGCCTAATGGCCGATGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26002528 TAAG
1 TAAG
26002532 TCCCGAAGGG
Statistics
Matches: 282, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 282 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26002706 original size:37 final size:37
Alignment explanation
Indices: 26002650--26002728 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26002640 CCGAGCTCTA
* * *
26002650 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
26002687 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26002724 AAGAC
1 AAGAC
26002729 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26006118 original size:27 final size:25
Alignment explanation
Indices: 26006075--26006126 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
26006065 CAACACCTAG
*
26006075 GGGTATTTTGGTCATTTTTGCCCTTAA
1 GGGTATTTTGGT-AATTTT-CCCTTAA
26006102 GGGT-TTTTCGGTAATTTTCCCTTAA
1 GGGTATTTT-GGTAATTTTCCCTTAA
26006127 TTATTGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
25 7 0.30
26 9 0.39
27 7 0.30
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.48
Consensus pattern (25 bp):
GGGTATTTTGGTAATTTTCCCTTAA
Found at i:26006475 original size:29 final size:29
Alignment explanation
Indices: 26006443--26006509 Score: 89
Period size: 29 Copynumber: 2.3 Consensus size: 29
26006433 TATAGCCCCT
*
26006443 TTAGGCCCAAATCACCTGTATATGGCCCA
1 TTAGGCCCAAATCACATGTATATGGCCCA
* * **
26006472 TTAGGCCCAAATCACATTTATTTGGCCTG
1 TTAGGCCCAAATCACATGTATATGGCCCA
26006501 TTAGGCCCA
1 TTAGGCCCA
26006510 GTCACATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (29 bp):
TTAGGCCCAAATCACATGTATATGGCCCA
Found at i:26010120 original size:29 final size:29
Alignment explanation
Indices: 26010080--26010191 Score: 104
Period size: 29 Copynumber: 3.9 Consensus size: 29
26010070 CTGTAACTGG
*
26010080 CCATTATGCCC-AATCAAATTCATATGGCC
1 CCATTAGGCCCAAATCAAATTCATATGG-C
* ** *
26010109 CCTTTAGGCCCAAATCACCTGT-ACATGGC
1 CCATTAGGCCCAAATCAAAT-TCATATGGC
*
26010138 CCATTAGGCCCAAATCAAATTTATATGGC
1 CCATTAGGCCCAAATCAAATTCATATGGC
* * *
26010167 CCGTTAGGCCC-AGTCACATTCATAT
1 CCATTAGGCCCAAATCAAATTCATAT
26010192 TCATGCTCAC
Statistics
Matches: 67, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
28 12 0.18
29 43 0.64
30 11 0.16
31 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (29 bp):
CCATTAGGCCCAAATCAAATTCATATGGC
Found at i:26010175 original size:58 final size:57
Alignment explanation
Indices: 26010068--26010178 Score: 154
Period size: 58 Copynumber: 1.9 Consensus size: 57
26010058 AAATTCACAT
* *
26010068 ACCTGTAACTGGCCATTATGCCCAATCAAATTCATATGGCCCCTTTAGGCCCAAATC
1 ACCTGTAACTGGCCATTAGGCCCAATCAAATTCATATGGCCCCGTTAGGCCCAAATC
*
26010125 ACCTGT-ACATGGCCCATTAGGCCCAAATCAAATTTATATGG-CCCGTTAGGCCCA
1 ACCTGTAAC-TGG-CCATTAGGCCC-AATCAAATTCATATGGCCCCGTTAGGCCCA
26010179 GTCACATTCA
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
56 2 0.04
57 9 0.19
58 22 0.46
59 15 0.31
ACGTcount: A:0.28, C:0.31, G:0.16, T:0.25
Consensus pattern (57 bp):
ACCTGTAACTGGCCATTAGGCCCAATCAAATTCATATGGCCCCGTTAGGCCCAAATC
Found at i:26012026 original size:16 final size:15
Alignment explanation
Indices: 26012005--26012034 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26011995 GAATGGAGTA
26012005 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
26012021 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
26012035 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:26014409 original size:18 final size:18
Alignment explanation
Indices: 26014388--26014424 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
26014378 TATTGTATTC
26014388 GATATATATATAGGGGAA
1 GATATATATATAGGGGAA
26014406 GATATATATATAGGGGAA
1 GATATATATATAGGGGAA
26014424 G
1 G
26014425 GTACATTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (18 bp):
GATATATATATAGGGGAA
Found at i:26014580 original size:15 final size:15
Alignment explanation
Indices: 26014560--26014604 Score: 63
Period size: 15 Copynumber: 3.0 Consensus size: 15
26014550 TATGATATTG
26014560 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
26014575 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * *
26014590 AATCCTGGTTTTCTT
1 TATCTTGGATTTCTT
26014605 GTTATCTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.13, C:0.16, G:0.13, T:0.58
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:26017612 original size:50 final size:50
Alignment explanation
Indices: 26017503--26017792 Score: 228
Period size: 50 Copynumber: 5.7 Consensus size: 50
26017493 TGAGAACACA
* * * ** **
26017503 TGTGTAATACTATGTGCAGGCTACGATGTGTTTCAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACAG--TTAGGTCACG
* * *
26017555 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACAGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACAGTTAGGTCACG
* * * * *
26017605 TGTGTAGTACTAAATGCAGGCTACTATGCGTACCCGAACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAG-AC-AGTT-AGGTCACG
* *
26017657 TGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATC-GTTAAGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-CAGTTAGGTCACG
* * ** * * ** *
26017707 TGTGTCGTACTAAGTGTAGGCTACTACATGTACC-GA-ATTTTTGGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACA-GTTAGGTCACG
* * *
26017756 TGTGTAGTGCTAACTGCAGGCTACTATGCGTACCAGA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
26017793 TAGCTTCGAT
Statistics
Matches: 188, Mismatches: 42, Indels: 18
0.76 0.17 0.07
Matches are distributed among these distances:
49 35 0.19
50 78 0.41
51 3 0.02
52 71 0.38
53 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGACAGTTAGGTCACG
Found at i:26017740 original size:102 final size:102
Alignment explanation
Indices: 26017550--26017740 Score: 267
Period size: 102 Copynumber: 1.9 Consensus size: 102
26017540 TGGTTTTAGG
* *
26017550 TCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAGACAGTTAGGTCACATGTGTAGTAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAGTTAAGTCACATGTGTAGTAC
**
26017615 TAAATGCAGGCTACTATGCGTACCCGAACAACTTCAA
66 TAAATGCAGGCTACTACACGTACCCGAACAACTTCAA
* * * *
26017652 TCACGTGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATC-GTTAAGTCACGTGTGTCGTA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-CAGTTAAGTCACATGTGTAGTA
* * *
26017716 CTAAGTGTAGGCTACTACATGTACC
65 CTAAATGCAGGCTACTACACGTACC
26017741 GAATTTTTGG
Statistics
Matches: 77, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
102 76 0.99
103 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (102 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACAGTTAAGTCACATGTGTAGTAC
TAAATGCAGGCTACTACACGTACCCGAACAACTTCAA
Found at i:26018014 original size:16 final size:15
Alignment explanation
Indices: 26017993--26018022 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26017983 GAATGAAGTA
26017993 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
26018009 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
26018023 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:26043158 original size:44 final size:43
Alignment explanation
Indices: 26043108--26043305 Score: 235
Period size: 44 Copynumber: 4.6 Consensus size: 43
26043098 TGTGATATCA
26043108 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTATG
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TTATGATTTATG
26043152 TGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTATG
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TTATGATTTATG
* *
26043196 TGTAAGACCACGTCTGGGACATTGGCAT-TA-TATCCAATTT-TG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATTAT--GATTTATG
* * **
26043238 TGTAAGACC-CTGTCTAGGACAGTGGCATCGATATATGA-TTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGAT-TATGATTTATG
* *
26043281 TGTAAGACCACGTTTGGGACGTTGG
1 TGTAAGACCACGTCTGGGACATTGG
26043306 GATTGTACTA
Statistics
Matches: 134, Mismatches: 12, Indels: 17
0.82 0.07 0.10
Matches are distributed among these distances:
41 4 0.03
42 28 0.21
43 26 0.19
44 73 0.54
45 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATTATGATTTATG
Found at i:26043275 original size:86 final size:86
Alignment explanation
Indices: 26043106--26043305 Score: 239
Period size: 86 Copynumber: 2.3 Consensus size: 86
26043096 TATGTGATAT
* *
26043106 CATGTAAGACCACGTCTGGGACATTGGCATCGACTTATGATTTATGTGTAAGACCACGTCTGGGA
1 CATGTAAGACCACGTCTGGGACATTGGCATCGAC-TATAATTTATGTGTAAGACCACGTCTAGGA
*
26043171 CATTGGCATCGACTTATGATTTA
65 CAGTGGCATCGACTTATGA-TTA
** *
26043194 TGTGTAAGACCACGTCTGGGACATTGGCAT-TA-TATCCAATTT-TGTGTAAGACC-CTGTCTAG
1 CATGTAAGACCACGTCTGGGACATTGGCATCGACTAT--AATTTATGTGTAAGACCAC-GTCTAG
26043255 GACAGTGGCATCGA-TATATGATTA
63 GACAGTGGCATCGACT-TATGATTA
* *
26043279 CATGTAAGACCACGTTTGGGACGTTGG
1 CATGTAAGACCACGTCTGGGACATTGG
26043306 GATTGTACTA
Statistics
Matches: 98, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
85 31 0.32
86 34 0.35
87 5 0.05
88 28 0.29
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (86 bp):
CATGTAAGACCACGTCTGGGACATTGGCATCGACTATAATTTATGTGTAAGACCACGTCTAGGAC
AGTGGCATCGACTTATGATTA
Found at i:26049218 original size:22 final size:22
Alignment explanation
Indices: 26049190--26049244 Score: 85
Period size: 22 Copynumber: 2.5 Consensus size: 22
26049180 TACTAAGTCA
26049190 ACAGGACAGCTCAACACCATAG
1 ACAGGACAGCTCAACACCATAG
*
26049212 ACAGGAC-GACTCAACACCGTAG
1 ACAGGACAG-CTCAACACCATAG
26049234 ACAGGACAGCT
1 ACAGGACAGCT
26049245 AAAGGCCGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
21 1 0.03
22 28 0.93
23 1 0.03
ACGTcount: A:0.38, C:0.31, G:0.22, T:0.09
Consensus pattern (22 bp):
ACAGGACAGCTCAACACCATAG
Found at i:26055542 original size:42 final size:42
Alignment explanation
Indices: 26055496--26055732 Score: 321
Period size: 42 Copynumber: 5.6 Consensus size: 42
26055486 AATGCCTCTA
* * *
26055496 TCCCAAACAGGGTCTTACACGAAATCAGATACGATGCCAATG
1 TCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
* *
26055538 TCCCATACATGGTCTTACACAAAATCAGATACGATGCCGATG
1 TCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
* * * * * *
26055580 TCCTAGACATGGTCTTTCAAGAAATCAGATACAATACTGATG
1 TCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
* * *
26055622 TCCTAGACATGGTCTTACACGAAATCAGATACAATGCTGATG
1 TCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
* *
26055664 TCCCAGACATGATCTTACACGAAATCAGATATGATGCCGATG
1 TCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
26055706 TCCCAGACATGGTCTTACACGTAAATC
1 TCCCAGACATGGTCTTACACG-AAATC
26055733 TTGAATCGAG
Statistics
Matches: 173, Mismatches: 21, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
42 168 0.97
43 5 0.03
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGAAATCAGATACGATGCCGATG
Found at i:26060274 original size:40 final size:40
Alignment explanation
Indices: 26060202--26060277 Score: 98
Period size: 40 Copynumber: 1.9 Consensus size: 40
26060192 GCTAAAAAAA
* * *
26060202 TGGCACTTAGTGTGTGGTTCGAAATAGTTTCGGCTAAATG
1 TGGCACTTAGTGTGCGATTCGAAATAGCTTCGGCTAAATG
* * *
26060242 TGGCACTTGGTGTGCGATTGGAGATAGCTTCGGCTA
1 TGGCACTTAGTGTGCGATTCGAAATAGCTTCGGCTA
26060278 TATATGTATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 30 1.00
ACGTcount: A:0.20, C:0.14, G:0.33, T:0.33
Consensus pattern (40 bp):
TGGCACTTAGTGTGCGATTCGAAATAGCTTCGGCTAAATG
Found at i:26063657 original size:74 final size:74
Alignment explanation
Indices: 26063536--26063681 Score: 265
Period size: 74 Copynumber: 2.0 Consensus size: 74
26063526 GGCTATGAGG
*
26063536 TATTACCAAGCTCAACATTTAATTTCAATCACATAATCTATCAACAAAAGAAGAAATCAAACTGA
1 TATTACCAAGCTAAACATTTAATTTCAATCACATAATCTATCAACAAAAGAAGAAATCAAACTGA
26063601 ATACATATT
66 ATACATATT
* *
26063610 TATTACCAAGCTAAACATTTAATTTCAATCACATAATCTATCAACAAAAGCAGAAATCGAACTGA
1 TATTACCAAGCTAAACATTTAATTTCAATCACATAATCTATCAACAAAAGAAGAAATCAAACTGA
26063675 ATACATA
66 ATACATA
26063682 CAGATTTATA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.47, C:0.19, G:0.06, T:0.27
Consensus pattern (74 bp):
TATTACCAAGCTAAACATTTAATTTCAATCACATAATCTATCAACAAAAGAAGAAATCAAACTGA
ATACATATT
Found at i:26064385 original size:40 final size:40
Alignment explanation
Indices: 26064315--26064457 Score: 218
Period size: 40 Copynumber: 3.6 Consensus size: 40
26064305 AGCTCAAAGT
* *
26064315 CTGCGGAACTTTAAGCCCGGATATA-A-TACCAGCACTAAGC
1 CTGCGGGA-TTTAA-CCCGGATATACATTACCAGCACGAAGC
26064355 CTGCGGGATTTAACCCGGATATACATTACCAGCACGAAGC
1 CTGCGGGATTTAACCCGGATATACATTACCAGCACGAAGC
*
26064395 CTGCGGGATTTGACCCGGATATACATTACCAGCACGAAGC
1 CTGCGGGATTTAACCCGGATATACATTACCAGCACGAAGC
*
26064435 CTGCGGGATTTGACCCGGATATA
1 CTGCGGGATTTAACCCGGATATA
26064458 TATAATATAT
Statistics
Matches: 98, Mismatches: 3, Indels: 4
0.93 0.03 0.04
Matches are distributed among these distances:
38 10 0.10
39 6 0.06
40 82 0.84
ACGTcount: A:0.29, C:0.27, G:0.24, T:0.21
Consensus pattern (40 bp):
CTGCGGGATTTAACCCGGATATACATTACCAGCACGAAGC
Found at i:26079505 original size:42 final size:42
Alignment explanation
Indices: 26079435--26079700 Score: 281
Period size: 42 Copynumber: 6.4 Consensus size: 42
26079425 TTCTAGATGA
* * ** *
26079435 GGTCTTACATGTAATTCAG-TATCGATGCCTCTGTCCCAGACAG
1 GGTCTTACACG-AAATCAGATA-CGATGCCGATGTCCCAGACAT
* *
26079478 GGTCTTATACGAAATTAGATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACAT
* * * *
26079520 GGTCTTACACG----CAGAAACAATGTCGATTTCCCAGACAT
1 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACAT
* * * *
26079558 CGTCTTACACGAAATTAGATATGATGCCGATGTCCTAGACAT
1 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACAT
*
26079600 GGTCTTACACGAAATCAAATACGATGCCGATGTCCCAGACAT
1 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACAT
* * * *
26079642 GGTCTTACATGAAATCAAATATGATGCCGATGTCCTAGACAT
1 GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACAT
*
26079684 GGTCATACACGTAAATC
1 GGTCTTACACG-AAATC
26079701 TCAAATTGGG
Statistics
Matches: 186, Mismatches: 31, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
38 32 0.17
42 138 0.74
43 16 0.09
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAGATACGATGCCGATGTCCCAGACAT
Found at i:26107656 original size:35 final size:35
Alignment explanation
Indices: 26107617--26107684 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
26107607 GGAAACACCA
* *
26107617 TGTAAATGGTATATAGGTCCTTTGA-GGTGACACAG
1 TGTAAACGGTATATAGGT-CTTTCAGGGTGACACAG
26107652 TGTAAACGGTATATAGGTCTTTCAGGGTGACAC
1 TGTAAACGGTATATAGGTCTTTCAGGGTGACAC
26107685 CTTGAAAGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 5 0.17
35 25 0.83
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (35 bp):
TGTAAACGGTATATAGGTCTTTCAGGGTGACACAG
Found at i:26110575 original size:12 final size:13
Alignment explanation
Indices: 26110553--26110582 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
26110543 CACTCAAGTA
26110553 TTCTATTTTCTTT
1 TTCTATTTTCTTT
26110566 TTCT-TTTTCTTT
1 TTCTATTTTCTTT
26110578 TTCTA
1 TTCTA
26110583 GTGTTCGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.77
Consensus pattern (13 bp):
TTCTATTTTCTTT
Found at i:26111802 original size:28 final size:27
Alignment explanation
Indices: 26111727--26111831 Score: 129
Period size: 27 Copynumber: 3.9 Consensus size: 27
26111717 AAGACCTCAG
* * *
26111727 TTTGTAAAATTACTAAAATACCCCCGG
1 TTTGTAAAATTACCAAAATACCCCTGA
* * *
26111754 TTTGTAAAGTTACCGAAATACCTCTGA
1 TTTGTAAAATTACCAAAATACCCCTGA
* *
26111781 TTTGTAAAAATTACCGAAATACCCCTAA
1 TTTGT-AAAATTACCAAAATACCCCTGA
26111809 TTTGTAAAATTACCAAAATACCC
1 TTTGTAAAATTACCAAAATACCC
26111832 TTGTAGGGTA
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
27 43 0.64
28 24 0.36
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
TTTGTAAAATTACCAAAATACCCCTGA
Found at i:26111802 original size:55 final size:54
Alignment explanation
Indices: 26111727--26111830 Score: 136
Period size: 55 Copynumber: 1.9 Consensus size: 54
26111717 AAGACCTCAG
* ** * *
26111727 TTTGTAAAATTACTAAAATACCCCCGGTTTGTAAAGTTACCGAAATACCTCTGA
1 TTTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTACCAAAATACCTCTGA
* *
26111781 TTTGTAAAAATTACCGAAATACCCCTAATTTGTAAAATTACCAAAATACC
1 TTTGT-AAAATTACCAAAATACCCCCAATTTGTAAAATTACCAAAATACC
26111831 CTTGTAGGGT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
54 5 0.12
55 37 0.88
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.31
Consensus pattern (54 bp):
TTTGTAAAATTACCAAAATACCCCCAATTTGTAAAATTACCAAAATACCTCTGA
Found at i:26112339 original size:27 final size:26
Alignment explanation
Indices: 26112247--26112340 Score: 64
Period size: 27 Copynumber: 3.5 Consensus size: 26
26112237 GCTATCTTGA
* *
26112247 CTATGGCTTTGTGCAATCGTATTTAC
1 CTATGGCTATGTGCAATCATATTTAC
* * *
26112273 CTGTGGCTATATGCCTATCATATTTA-
1 CTATGGCTATGTG-CAATCATATTTAC
* * * *
26112299 TTATTGACTCTGTGTCGATCATATTTAC
1 CTA-TGGCTATGTG-CAATCATATTTAC
*
26112327 CTATGGCTGTGTGC
1 CTATGGCTATGTGC
26112341 TGATTAAATT
Statistics
Matches: 50, Mismatches: 15, Indels: 6
0.70 0.21 0.08
Matches are distributed among these distances:
26 12 0.24
27 36 0.72
28 2 0.04
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (26 bp):
CTATGGCTATGTGCAATCATATTTAC
Found at i:26116261 original size:39 final size:40
Alignment explanation
Indices: 26116177--26116261 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 40
26116167 ACTTAATTCA
* * *
26116177 CCAGCATTAAGCCTGCGGGACTTTAAACCCGGATACAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
* *
26116217 CCAGCATGAAGCCAGCGGGTCTCT-AACCCGGATGCAATC
1 CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
*
26116256 TCAGCA
1 CCAGCA
26116262 CAATTCATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 19 0.49
40 20 0.51
ACGTcount: A:0.28, C:0.32, G:0.22, T:0.18
Consensus pattern (40 bp):
CCAGCATGAAGCCAGCGGGACTCTAAACCCGGATACAATC
Found at i:26116437 original size:47 final size:45
Alignment explanation
Indices: 26116332--26116440 Score: 130
Period size: 47 Copynumber: 2.4 Consensus size: 45
26116322 TGCTCACTTT
* * * *
26116332 TCACAATTGGTCATTCAGCCTTATCACATATTCAGTTACACATATA
1 TCAC-ATTGGCCATTCGGCCTTATCACATATACACTTACACATATA
*
26116378 TCACATTGGCCATTCGGCCTTATCACATATACACACTTTCACAT-TCA
1 TCACATTGGCCATTCGGCCTTATCACATAT--ACACTTACACATAT-A
26116425 TCACATTGGCCATTCG
1 TCACATTGGCCATTCG
26116441 ATCTTAAGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
45 24 0.44
46 5 0.09
47 26 0.47
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.33
Consensus pattern (45 bp):
TCACATTGGCCATTCGGCCTTATCACATATACACTTACACATATA
Found at i:26119027 original size:22 final size:20
Alignment explanation
Indices: 26118987--26119027 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
26118977 AGTCCTATTA
*
26118987 ACTAAATTCACATGCAATTG
1 ACTAAATTCACATGAAATTG
26119007 ACTAAATTCAAACATGAAATT
1 ACTAAATTC--ACATGAAATT
26119028 TTCACACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
22 9 0.50
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
ACTAAATTCACATGAAATTG
Found at i:26122420 original size:7 final size:7
Alignment explanation
Indices: 26122408--26122434 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
26122398 AATATTATTG
26122408 AAATTTA
1 AAATTTA
26122415 AAATTTA
1 AAATTTA
26122422 AAATTTA
1 AAATTTA
26122429 AAATTT
1 AAATTT
26122435 GTTATTATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AAATTTA
Found at i:26123560 original size:15 final size:15
Alignment explanation
Indices: 26123540--26123591 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
26123530 ACCACAAAAC
26123540 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
26123555 ATTTATAATTTTAATAAAT
1 ATTTAT--TATTAAT--AT
*
26123574 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
26123589 ATT
1 ATT
26123592 AATATTGTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 11 0.37
17 11 0.37
19 8 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:26127360 original size:29 final size:30
Alignment explanation
Indices: 26127291--26127399 Score: 102
Period size: 29 Copynumber: 3.8 Consensus size: 30
26127281 ACCCCTAGAT
* *
26127291 ACATGCATATGACCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
** * *
26127319 TTATTCAAATGGCCCATCT-GGCCCAGTTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* * *
26127348 ATATTCTTATGGCCCA-CTAGGCTCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
26127377 ACATTCATATGGCCCAT-TAGGCC
1 ACATTCATATGGCCCATCTAGGCC
26127400 TAAATCATAT
Statistics
Matches: 63, Mismatches: 14, Indels: 7
0.75 0.17 0.08
Matches are distributed among these distances:
28 19 0.30
29 44 0.70
ACGTcount: A:0.26, C:0.31, G:0.16, T:0.28
Consensus pattern (30 bp):
ACATTCATATGGCCCATCTAGGCCCAATTC
Found at i:26127408 original size:58 final size:57
Alignment explanation
Indices: 26127298--26127410 Score: 129
Period size: 58 Copynumber: 2.0 Consensus size: 57
26127288 GATACATGCA
** **
26127298 TATGACCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGACCCACTAGGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
* * * *
26127355 TATGGCCCACTAGGCTCAATTCACATTCATATGGCCCAT-TAGGCCTAAATCATATT
1 TATGACCCACTAGGCCCAA-TCACATTCAAATGGCCCATCT-GGCCCAAATCATATT
26127411 ATATTCATTC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
57 18 0.39
58 28 0.61
ACGTcount: A:0.27, C:0.29, G:0.14, T:0.30
Consensus pattern (57 bp):
TATGACCCACTAGGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
Found at i:26127516 original size:19 final size:19
Alignment explanation
Indices: 26127483--26127529 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
26127473 TGGGCCCAAC
*
26127483 AGCCCA-TCAGGCCCATTT
1 AGCCCATTCTGGCCCATTT
26127501 AGCCCATTCTGGCCCATTT
1 AGCCCATTCTGGCCCATTT
* *
26127520 GGCCAATTCT
1 AGCCCATTCT
26127530 CAACCCAAGT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.19, C:0.36, G:0.17, T:0.28
Consensus pattern (19 bp):
AGCCCATTCTGGCCCATTT
Found at i:26128890 original size:16 final size:16
Alignment explanation
Indices: 26128869--26128901 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26128859 AAAAATTCAA
*
26128869 GATTTCGGGATTTTTG
1 GATTTCAGGATTTTTG
26128885 GATTTCAGGATTTTTG
1 GATTTCAGGATTTTTG
26128901 G
1 G
26128902 GGTGTTACAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.06, G:0.30, T:0.48
Consensus pattern (16 bp):
GATTTCAGGATTTTTG
Found at i:26136686 original size:22 final size:22
Alignment explanation
Indices: 26136659--26136704 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
26136649 AAATTATTAA
* *
26136659 TATAATGAATTTTAAATAATTT
1 TATAATAAATATTAAATAATTT
* *
26136681 TATAATAAATATTGATTAATTT
1 TATAATAAATATTAAATAATTT
26136703 TA
1 TA
26136705 ATCATTTTCG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (22 bp):
TATAATAAATATTAAATAATTT
Found at i:26140041 original size:42 final size:42
Alignment explanation
Indices: 26139994--26140149 Score: 170
Period size: 42 Copynumber: 3.7 Consensus size: 42
26139984 CTAAGACTAT
* * *
26139994 GTGTAAGAACATATCTGGGATATGGCATCTATATGAGGCTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
*
26140036 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTC
1 GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
* * ** * *
26140078 GTGTAAGACCATAACTGGGTTATTGGTGTTCGATACGAGA-TCCC
1 GTGTAAGACCATATCTGGGATA-TGG-CATCGATATGAGACT-TC
* *
26140122 ATGTAAGACCATATCTAGGATATGGCAT
1 GTGTAAGACCATATCTGGGATATGGCAT
26140150 TGGTATGGTA
Statistics
Matches: 95, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 59 0.62
43 7 0.07
44 29 0.31
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (42 bp):
GTGTAAGACCATATCTGGGATATGGCATCGATATGAGACTTC
Found at i:26145079 original size:47 final size:47
Alignment explanation
Indices: 26145016--26145381 Score: 256
Period size: 48 Copynumber: 7.7 Consensus size: 47
26145006 TTTGTATGCT
*
26145016 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCACATTATGAAAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CACATTATGAGAGCC
* ** * * *
26145062 AATGTAAGACCATGTCTGGGACATGGCATTAG--TATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT---ATGAGAGCC
* * * *
26145110 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCTAC--GA-GATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-ACATTATGA-GAGCC
* * * *
26145154 AGTGTAAGACCATGTCTAGGACATGGCATCGGGAC-TTATAGAGGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTAT-GA-GAGCC
* * *
26145202 AATGTAAGACCATGTCTGGGACATGGCATCGGCACGGATATGTGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--AT-TATGAGAGCC
* * * * *
26145252 AGTGTAAGACCATGTCAGGGACATGGCGTCGGCCTCGATT-TCGACAGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGG-CAC-ATTAT-GAGAGCC
* *
26145301 AGTGTAAGACCATGTCTAGAACATGGCATC-G-AC-TTGATGGATGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATT-AT-GA-GAGCC
26145348 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCA
26145382 TTACACCCTA
Statistics
Matches: 252, Mismatches: 43, Indels: 47
0.74 0.13 0.14
Matches are distributed among these distances:
43 2 0.01
44 14 0.06
45 18 0.07
46 25 0.10
47 59 0.23
48 61 0.24
49 32 0.13
50 34 0.13
51 5 0.02
52 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCACATTATGAGAGCC
Found at i:26149958 original size:45 final size:45
Alignment explanation
Indices: 26149908--26149993 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
26149898 CAAAACATGG
26149908 GTCACATATATCACGAACTT-AGACCACAACTCAATGAGTTCGGAT
1 GTCACATATATCACGAA-TTCAGACCACAACTCAATGAGTTCGGAT
*
26149953 GTCACATATATCATGAATTCAGACCACAACTCAATGAGTTC
1 GTCACATATATCACGAATTCAGACCACAACTCAATGAGTTC
26149994 AAATTACATA
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
44 2 0.05
45 37 0.95
ACGTcount: A:0.36, C:0.24, G:0.14, T:0.26
Consensus pattern (45 bp):
GTCACATATATCACGAATTCAGACCACAACTCAATGAGTTCGGAT
Found at i:26159857 original size:46 final size:46
Alignment explanation
Indices: 26159804--26160352 Score: 771
Period size: 46 Copynumber: 12.0 Consensus size: 46
26159794 GCTTTCTGAA
*
26159804 ATGAAATGTGTAACACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
26159850 ATGAAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
26159896 ATGAAATGTGTAAGACCATGGCTGAAAGAGACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
26159942 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACAAGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*
26159988 ATCAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * *
26160034 ATCAAATGTGTAAGACCATGGTTGAAATACACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
26160080 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
26160126 ATGAAATGTGTAAGACCATGGTTGAAAGATGCCATGGCAACAGGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* *
26160172 ATAAAATGTGTAAGACCATGATTGAAAGATACCATGGCAACATG--
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* ** ** * *
26160216 ACGAGAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAAC
1 ATGA-AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
*** * * *
26160263 ATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACCTAAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
* * * * * *
26160309 A-GAAAATGAGTAAGACCATAGTTAAAAGACACTATGGCATCATG
1 ATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATG
26160353 TCAAAGATTA
Statistics
Matches: 458, Mismatches: 41, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
44 2 0.00
45 35 0.08
46 418 0.91
47 3 0.01
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAT
Found at i:26160652 original size:16 final size:17
Alignment explanation
Indices: 26160633--26160665 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26160623 ATGATGGAGC
26160633 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
26160649 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
26160666 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:26163435 original size:18 final size:18
Alignment explanation
Indices: 26163412--26163465 Score: 57
Period size: 18 Copynumber: 3.3 Consensus size: 18
26163402 CCACCACCAA
26163412 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
*
26163430 CTCCACCA-CCA-A----
1 CTCCACTAGCCACACTTG
26163442 CTCCACTAGCCACACTTG
1 CTCCACTAGCCACACTTG
26163460 CTCCAC
1 CTCCAC
26163466 CACCTACTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 12
0.67 0.05 0.29
Matches are distributed among these distances:
12 7 0.25
13 3 0.11
14 1 0.04
16 1 0.04
17 3 0.11
18 13 0.46
ACGTcount: A:0.24, C:0.50, G:0.07, T:0.19
Consensus pattern (18 bp):
CTCCACTAGCCACACTTG
Found at i:26163438 original size:30 final size:30
Alignment explanation
Indices: 26163402--26163500 Score: 180
Period size: 30 Copynumber: 3.3 Consensus size: 30
26163392 CTAGCCTTTG
26163402 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
26163432 CCACCACCAACTCCACTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
* *
26163462 CCACCACCTACTCCATTAGCCACACTTGCT
1 CCACCACCAACTCCACTAGCCACACTTGCT
26163492 CCACCACCA
1 CCACCACCA
26163501 CTTGTACCTA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 66 1.00
ACGTcount: A:0.26, C:0.51, G:0.06, T:0.17
Consensus pattern (30 bp):
CCACCACCAACTCCACTAGCCACACTTGCT
Found at i:26164034 original size:24 final size:24
Alignment explanation
Indices: 26163986--26164115 Score: 83
Period size: 25 Copynumber: 5.6 Consensus size: 24
26163976 TTTTTTTTGT
*
26163986 TATTAT-TATATTTCTTAATATTA
1 TATTATGTATATTTCTTAATAATA
*
26164009 TATTATGTATATATTCTT-TTAATA
1 TATTATGTATAT-TTCTTAATAATA
* * **
26164033 TATTAGGTATA-TTCTAAATTCTA
1 TATTATGTATATTTCTTAATAATA
* * *
26164056 TATTACGTATA--TATT-ATACTA
1 TATTATGTATATTTCTTAATAATA
* * *
26164077 TTTTATGTATATATCTTTAATACTA
1 TATTATGTATATTTC-TTAATAATA
*
26164102 TATTATTTATATTT
1 TATTATGTATATTT
26164116 TTTTTTCTAC
Statistics
Matches: 83, Mismatches: 17, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
21 14 0.17
22 6 0.07
23 20 0.24
24 21 0.25
25 22 0.27
ACGTcount: A:0.34, C:0.06, G:0.04, T:0.56
Consensus pattern (24 bp):
TATTATGTATATTTCTTAATAATA
Found at i:26164154 original size:22 final size:22
Alignment explanation
Indices: 26164129--26164170 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26164119 TTTCTACATG
*
26164129 TTATCTTATGTATATATTTTAA
1 TTATATTATGTATATATTTTAA
*
26164151 TTATATTATGTATGTATTTT
1 TTATATTATGTATATATTTT
26164171 TTTACACTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (22 bp):
TTATATTATGTATATATTTTAA
Found at i:26164181 original size:26 final size:25
Alignment explanation
Indices: 26164135--26164199 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
26164125 CATGTTATCT
* *
26164135 TATGTATATATTTTAATTATATTATG
1 TATGTAT-TTTTTTAACTATATTATG
26164161 TATGTATTTTTTTACACTATATTATG
1 TATGTATTTTTTTA-ACTATATTATG
**
26164187 TACATATTTTTTT
1 TATGTATTTTTTT
26164200 TTATATCTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
25 6 0.18
26 28 0.82
ACGTcount: A:0.29, C:0.05, G:0.06, T:0.60
Consensus pattern (25 bp):
TATGTATTTTTTTAACTATATTATG
Done.