Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 82 of 322
Found at i:26166886 original size:40 final size:40
Alignment explanation
Indices: 26166826--26167134 Score: 474
Period size: 40 Copynumber: 7.7 Consensus size: 40
26166816 TGAGCATTGG
26166826 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
26166866 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
26166906 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
26166946 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
*
26166986 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
26167026 AATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGAT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* *
26167066 GATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTT
1 AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
* * *
26167106 GATATGTCCGGGTTAAGACCCGAAGGCAA
1 AATATATCCGGGCTAAGACCCGAAGGCAA
26167135 AGGTGTTTGC
Statistics
Matches: 243, Mismatches: 26, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 243 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
AATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTT
Found at i:26166960 original size:80 final size:80
Alignment explanation
Indices: 26166827--26167134 Score: 580
Period size: 80 Copynumber: 3.9 Consensus size: 80
26166817 GAGCATTGGA
26166827 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGG
26166892 CAATTATGCGAGATG
66 CAATTATGCGAGATG
26166907 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGG
26166972 CAATTATGCGAGATG
66 CAATTATGCGAGATG
26166987 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGG
26167052 CAATTATGCGAGATG
66 CAATTATGCGAGATG
* * * *
26167067 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTGATATGTCCGGGTTAAGACCCGAAGG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGG
26167132 CAA
66 CAA
26167135 AGGTGTTTGC
Statistics
Matches: 224, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
80 224 1.00
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (80 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTAATATGTCCGGGCTATGACCCGAAGG
CAATTATGCGAGATG
Found at i:26168468 original size:28 final size:28
Alignment explanation
Indices: 26168436--26168526 Score: 80
Period size: 28 Copynumber: 3.2 Consensus size: 28
26168426 ATCACGAAAC
26168436 TGATTTTCGAGTTGTGAAACTCAAGATA
1 TGATTTTCGAGTTGTGAAACTCAAGATA
** * * * *
26168464 TGATTTTTAAAG-CG-AAAAATCACA-AAA
1 TGA-TTTTCGAGTTGTGAAACTCA-AGATA
26168491 CTGATTTTCGAGTTGTGAAACTCAAGATA
1 -TGATTTTCGAGTTGTGAAACTCAAGATA
26168520 TGATTTT
1 TGATTTT
26168527 TGAAGCGACT
Statistics
Matches: 45, Mismatches: 12, Indels: 12
0.65 0.17 0.17
Matches are distributed among these distances:
27 14 0.31
28 17 0.38
29 14 0.31
ACGTcount: A:0.36, C:0.11, G:0.18, T:0.35
Consensus pattern (28 bp):
TGATTTTCGAGTTGTGAAACTCAAGATA
Found at i:26168492 original size:56 final size:56
Alignment explanation
Indices: 26168421--26168534 Score: 210
Period size: 56 Copynumber: 2.0 Consensus size: 56
26168411 TAGTTTCAGG
*
26168421 GAAAAATCACGAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGC
1 GAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGC
*
26168477 GAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTGAAGC
1 GAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGC
26168533 GA
1 GA
26168535 CTAGTACTCA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (56 bp):
GAAAAATCACAAAACTGATTTTCGAGTTGTGAAACTCAAGATATGATTTTTAAAGC
Found at i:26174423 original size:42 final size:42
Alignment explanation
Indices: 26174311--26174426 Score: 126
Period size: 43 Copynumber: 2.7 Consensus size: 42
26174301 TATCGTACCA
* * * * **
26174311 ATGCCTTATCCCAAATATGGTCTTACATGTAATCTTGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
* * *
26174353 ATGCCAATAGCCTAGCTATGGTCTTACACG-AAGTATCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAA-TATCATATCG
26174396 ATGCCATATCCCAGATATGGTCTTACACGTA
1 ATGCCATATCCCAGATATGGTCTTACACGTA
26174427 TTATAATCTC
Statistics
Matches: 59, Mismatches: 12, Indels: 5
0.78 0.16 0.07
Matches are distributed among these distances:
42 28 0.47
43 31 0.53
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAATATCATATCG
Found at i:26176030 original size:27 final size:27
Alignment explanation
Indices: 26176000--26176177 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
26175990 ATATTGAGTC
* *
26176000 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
26176027 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
26176054 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** * *
26176082 CGCACACTTAGTGCCGCATGGTCGATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
26176109 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
26176136 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
26176163 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26176178 GTACAATTCA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:26176139 original size:82 final size:81
Alignment explanation
Indices: 26176026--26176176 Score: 232
Period size: 82 Copynumber: 1.9 Consensus size: 81
26176016 TATAATCAAC
* *
26176026 TCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCACACTT
26176091 AGTGCCGCATGGTCGAT
65 AGTGCCGCATGGTCGAT
* **
26176108 TCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
1 TCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTT
26176172 AGTGC
65 AGTGC
26176177 TGTACAATTC
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 16 0.25
82 47 0.75
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
GTGCCGCATGGTCGAT
Found at i:26176190 original size:27 final size:26
Alignment explanation
Indices: 26176000--26176202 Score: 135
Period size: 27 Copynumber: 7.4 Consensus size: 26
26175990 ATATTGAGTC
* * * *
26176000 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACA-ATTCAAAT
26176027 CGCACACTTAGTGCTACGTAA-TCAAAT
1 CGCACACTTAGTGCTAC--AATTCAAAT
*
26176054 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACA-ATTCAAA-T
** * *
26176082 CGCACACTTAGTGCCGC-ATGGTCGATT
1 CGCACACTTAGTGCTACAAT--TCAAAT
**
26176109 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CA-ATTCAAAT
* *
26176136 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACA-ATTCAAAT
26176163 CGCACACTTAGTGCTGTACAATTC-AAT
1 CGCACACTTAGTGC--TACAATTCAAAT
26176190 CCCGCACACTTAG
1 --CGCACACTTAG
26176203 CGCCAATCTC
Statistics
Matches: 145, Mismatches: 16, Indels: 28
0.77 0.08 0.15
Matches are distributed among these distances:
25 1 0.01
26 2 0.01
27 101 0.70
28 24 0.17
29 17 0.12
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (26 bp):
CGCACACTTAGTGCTACAATTCAAAT
Found at i:26180884 original size:12 final size:11
Alignment explanation
Indices: 26180853--26180881 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
26180843 ATACAAGTTT
26180853 AAAAAAATTCG
1 AAAAAAATTCG
26180864 AAAAAAATTCG
1 AAAAAAATTCG
26180875 AAAAAAA
1 AAAAAAA
26180882 ATTTGAAGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.72, C:0.07, G:0.07, T:0.14
Consensus pattern (11 bp):
AAAAAAATTCG
Found at i:26182992 original size:14 final size:14
Alignment explanation
Indices: 26182975--26183060 Score: 57
Period size: 15 Copynumber: 5.9 Consensus size: 14
26182965 GGAATATTGT
26182975 AAAAAAAAAGAAGAA
1 AAAAAAAAAGAAG-A
*
26182990 AAAAATAAGAAAAAGA
1 AAAAA-AA-AAGAAGA
*
26183006 AAACAAAAAAGAGTGA
1 AAA-AAAAAAGA-AGA
* * *
26183022 AAAGAAAAACAA-C
1 AAAAAAAAAGAAGA
*
26183035 AAAGAAAAAGAAGA
1 AAAAAAAAAGAAGA
*
26183049 AAAAGAAAAGAA
1 AAAAAAAAAGAA
26183061 AATTGAGAAA
Statistics
Matches: 55, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
13 11 0.20
14 10 0.18
15 14 0.25
16 13 0.24
17 7 0.13
ACGTcount: A:0.79, C:0.03, G:0.15, T:0.02
Consensus pattern (14 bp):
AAAAAAAAAGAAGA
Found at i:26186167 original size:14 final size:14
Alignment explanation
Indices: 26186109--26186167 Score: 57
Period size: 14 Copynumber: 4.2 Consensus size: 14
26186099 ACCTAAACCG
*
26186109 ACCAATTCGTTCAT
1 ACCATTTCGTTCAT
*
26186123 ATCC-CTTCGTTCAT
1 A-CCATTTCGTTCAT
* *
26186137 ACCATTTCATTCCT
1 ACCATTTCGTTCAT
*
26186151 ACCATTTCGTTCGT
1 ACCATTTCGTTCAT
26186165 ACC
1 ACC
26186168 CCTCTTTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
13 2 0.05
14 33 0.89
15 2 0.05
ACGTcount: A:0.20, C:0.34, G:0.07, T:0.39
Consensus pattern (14 bp):
ACCATTTCGTTCAT
Found at i:26191631 original size:56 final size:56
Alignment explanation
Indices: 26191497--26191634 Score: 240
Period size: 56 Copynumber: 2.5 Consensus size: 56
26191487 TCCCAGACAG
* * **
26191497 GGTCTTACTCGTACACATATATCGAAATCACATATCGATGCCAACGTATTAAATGT
1 GGTCTTACTCGCACACATATATTGAAATCACATATCGATGCCAACGTATTAAACAT
26191553 GGTCTTACTCGCACACATATATTGAAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACATATATTGAAATCACATATCGATGCCAACGTATTAAACAT
26191609 GGTCTTACTCGCACACATATATTGAA
1 GGTCTTACTCGCACACATATATTGAA
26191635 GCCATGGTCT
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 78 1.00
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATTGAAATCACATATCGATGCCAACGTATTAAACAT
Found at i:26192478 original size:21 final size:21
Alignment explanation
Indices: 26192454--26192497 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
26192444 GTTTTTATTC
26192454 TTTGTTTTCTTTCTTTAATAT
1 TTTGTTTTCTTTCTTTAATAT
26192475 TTTGTTTTCTTTCTTTAATAT
1 TTTGTTTTCTTTCTTTAATAT
26192496 TT
1 TT
26192498 GGCTATCTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (21 bp):
TTTGTTTTCTTTCTTTAATAT
Found at i:26194828 original size:27 final size:27
Alignment explanation
Indices: 26194766--26194848 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 27
26194756 TGTAAGAACT
* *
26194766 GTAAGTGTGGCAAAGCCACCAGTATCA
1 GTAATTGTGGCATAGCCACCAGTATCA
*
26194793 GTAATTGTGGCATAGCCACTAGTAAT-A
1 GTAATTGTGGCATAGCCACCAGT-ATCA
*
26194820 GTGAA-TGTGACATA-CTCACCAGTA-CA
1 GT-AATTGTGGCATAGC-CACCAGTATCA
26194846 GTA
1 GTA
26194849 CTTCCTCCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
25 1 0.02
26 5 0.11
27 37 0.79
28 4 0.09
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
GTAATTGTGGCATAGCCACCAGTATCA
Found at i:26195015 original size:27 final size:27
Alignment explanation
Indices: 26194984--26195291 Score: 366
Period size: 27 Copynumber: 11.4 Consensus size: 27
26194974 TGGCCTAATC
* * *
26194984 GTCATTTTACCATATAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *
26195011 ATCATTTTACCTTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
26195038 GTCATTTTACCCTACATGGACATTACT
1 GTCATTTTACCCTACAGGGGCATTACG
* *
26195065 GTTATTTTACCCTACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
26195092 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
26195119 GTCATTTTATCCTGCAAGGGCATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
*
26195146 GTCATTTTACCCTATAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
*
26195173 GTCATTTTACCCTATC-GGGGCATTATG
1 GTCATTTTACCCTA-CAGGGGCATTACG
*
26195200 ATCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
** ** *
26195227 GTTGTTTTACTGTACAGGGGCATTACT
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
26195254 GTCATTTTACCCAACATGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
26195281 GTCATTTTACC
1 GTCATTTTACC
26195292 TATTTTGGGG
Statistics
Matches: 234, Mismatches: 45, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 1 0.00
27 233 1.00
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:26197129 original size:47 final size:45
Alignment explanation
Indices: 26197069--26197236 Score: 169
Period size: 47 Copynumber: 3.6 Consensus size: 45
26197059 GAAGAAGGTT
26197069 AGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCGCAT-ATGATAGCC
* * * * *
26197115 CGTGTAAGACCATGTCTGGGACATGGCAT-TGGCGTATAGGTGAGT-GTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCGCATA--TGA-TAGCC
* *
26197163 AGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGTTAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCGC-AT-ATGATAGCC
* *
26197210 AGTGTAAGACGTGTCGGGGACATGCAT
1 AGTGTAAGACATGTCTGGGACATGCAT
26197237 TGGCTAAGTT
Statistics
Matches: 99, Mismatches: 14, Indels: 17
0.76 0.11 0.13
Matches are distributed among these distances:
46 14 0.14
47 64 0.65
48 19 0.19
49 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.31, T:0.24
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCGCATATGATAGCC
Found at i:26197167 original size:94 final size:92
Alignment explanation
Indices: 26197068--26197330 Score: 307
Period size: 94 Copynumber: 2.8 Consensus size: 92
26197058 AGAAGAAGGT
*
26197068 TAGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCCCGTGTAAGACCATGTCTG
1 TAGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCCAGTGTAAGACCATGTCTG
26197133 GGACATGGCATTGGCGTATAGGTGAGTG-
66 GGACATGGCATTGGC-TA-AGGTGAGTGC
* * * *
26197161 TCAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGTTAGCCAGTGTAAGA-CGTGTC
1 T-AGTGTAAGACATGTCTGGGACATGCATCAGCCGC-ATCATGATAGCCAGTGTAAGACCATGTC
* * **
26197225 GGGGACAT-GCATTGGCTAAGTTTTGTGC
64 TGGGACATGGCATTGGCTAAGGTGAGTGC
* * * * * * *
26197253 TAGTGTAAGACATGTCTGGGACATGTATTAGCATGTATACACGAGAGCTAGTGTAAGACCATGTC
1 TAGTGTAAGACATGTCTGGGACATGCATCAGC-CGCAT-CATGATAGCCAGTGTAAGACCATGTC
26197318 TGGGACATGGCAT
64 TGGGACATGGCAT
26197331 CGACCTCGAT
Statistics
Matches: 142, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
91 37 0.26
92 17 0.12
93 21 0.15
94 49 0.35
95 18 0.13
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (92 bp):
TAGTGTAAGACATGTCTGGGACATGCATCAGCCGCATCATGATAGCCAGTGTAAGACCATGTCTG
GGACATGGCATTGGCTAAGGTGAGTGC
Found at i:26197274 original size:44 final size:44
Alignment explanation
Indices: 26197116--26197277 Score: 130
Period size: 47 Copynumber: 3.5 Consensus size: 44
26197106 ATGATAGCCC
* **
26197116 GTGTAAGACCATGTCTGGGACATGGCATTGGCGTATAGGTGAGTG-TCA
1 GTGTAAGA-CATGTCTGGGACAT-GCATTGGC-TA-AGTTTTGTGCT-A
* * * * * *
26197164 GTGTAAGACATGTCTGGGACATGCATCAGCCTCGATGATGTT-AGCCA
1 GTGTAAGACATGTCTGGGACATGCAT-TGGCT--AAG-TTTTGTGCTA
* *
26197211 GTGTAAGACGTGTCGGGGACATGCATTGGCTAAGTTTTGTGCTA
1 GTGTAAGACATGTCTGGGACATGCATTGGCTAAGTTTTGTGCTA
26197255 GTGTAAGACATGTCTGGGACATG
1 GTGTAAGACATGTCTGGGACATG
26197278 TATTAGCATG
Statistics
Matches: 89, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
43 3 0.03
44 26 0.29
46 8 0.09
47 43 0.48
48 9 0.10
ACGTcount: A:0.23, C:0.16, G:0.33, T:0.28
Consensus pattern (44 bp):
GTGTAAGACATGTCTGGGACATGCATTGGCTAAGTTTTGTGCTA
Found at i:26204767 original size:94 final size:94
Alignment explanation
Indices: 26204557--26204871 Score: 243
Period size: 94 Copynumber: 3.4 Consensus size: 94
26204547 GTTATGTGAG
* * * * *
26204557 AGCCAGTATAAGACCATGTCTGGGACA-GGCATCGACATTGAGATGAGGGCTAGTCTAAGACATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATGAGAGCCAATCTAAGACATG
* *
26204621 TCTGGGACATGCACCAGCTGTATCATGAT
66 CCTGGGACATCCACCAGCTGTATCATGAT
* * * *
26204650 AGTCC-GTGTAAGACCACAG-CTGGGACATGGCATCGACGTAGAGGTGAGAGCCAATGTAAGACA
1 AG-CCAGTGTAAGACCA-TGTCTGGGACATGGCATCGACATAGAGATGAGAGCCAATCTAAGACA
* *
26204713 TGCCTGGGACATCCACCAGCCTCG-ATGATGTT
64 TGCCTGGGACATCCACCAG-CT-GTATCATGAT
* * * ** * * *
26204745 AGCCAGTGTAAGA-CGTGTCTGGGACAT-GCATCGGC-TA-AGTTTCG-TCCTAGTGTAAGACAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATGAGAGCC-AATCTAAGACAT
* ** * * * *
26204805 GTCTGGGACATGTATCAGCACGTATACACGAG
65 GCCTGGGACATCCACCAGC-TGTAT-CATGAT
*
26204837 AGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
26204872 GCCTCGATAG
Statistics
Matches: 177, Mismatches: 32, Indels: 25
0.76 0.14 0.11
Matches are distributed among these distances:
90 4 0.02
91 31 0.18
92 16 0.09
93 41 0.23
94 66 0.37
95 18 0.10
96 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (94 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACATAGAGATGAGAGCCAATCTAAGACATG
CCTGGGACATCCACCAGCTGTATCATGAT
Found at i:26205859 original size:55 final size:54
Alignment explanation
Indices: 26205744--26205860 Score: 132
Period size: 55 Copynumber: 2.1 Consensus size: 54
26205734 TTTAAAATTT
* * *
26205744 TAAA-TCAGTATTGTCCACGGTTAGGCCACACAGGCGTGTGCCATAGCCGTGTC
1 TAAAGTCAGTATTGTCCACGGGTAGACCACACAGGCGTGTGCCATAGCCGTGCC
* *
26205797 TATAAGTCAGTATT-TCCCACGGGTAGACCACAC-GAGCGTGTGTCATGGCCGTGCCC
1 TA-AAGTCAGTATTGT-CCACGGGTAGACCACACAG-GCGTGTGCCATAGCCGTG-CC
26205853 TAAAGTCA
1 TAAAGTCA
26205861 ATGCCGCACA
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
53 2 0.04
54 4 0.07
55 45 0.83
56 3 0.06
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Consensus pattern (54 bp):
TAAAGTCAGTATTGTCCACGGGTAGACCACACAGGCGTGTGCCATAGCCGTGCC
Found at i:26209025 original size:40 final size:39
Alignment explanation
Indices: 26208981--26209201 Score: 264
Period size: 40 Copynumber: 5.6 Consensus size: 39
26208971 GCCACTAGCT
*
26208981 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
26209021 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
* * *
26209060 CAAATGCCTTCGAGACTTAGCCCGGATATAATAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * *
26209100 CAAACGCCTTCGGGACTTAGCCTGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
26209140 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
26209180 CAAATG-CTCTCGGGACTTAGCC
1 CAAATGCCT-TCGGGACTTAGCC
26209202 TGGTTATCAT
Statistics
Matches: 160, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
39 39 0.24
40 121 0.76
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:26209079 original size:79 final size:80
Alignment explanation
Indices: 26208981--26209165 Score: 273
Period size: 79 Copynumber: 2.3 Consensus size: 80
26208971 GCCACTAGCT
* * * *
26208981 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
26209046 -TATAATAACTCGCA
66 ATATAATAACTCGCA
* * *
26209060 CAAATGCCTTCGAGACTTAGCCCGGATATAATAGCTCGCACAAACGCCTTCGGGACTTAGCCTGG
1 CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
* *
26209125 ATATAGTAGCTCGCA
66 ATATAATAACTCGCA
*
26209140 CGAATGCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26209166 ATTAGCCACT
Statistics
Matches: 94, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 58 0.62
80 36 0.38
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAATAACTCGCACAAACGCCTTCGGGACTTAGCCCGG
ATATAATAACTCGCA
Found at i:26211482 original size:119 final size:120
Alignment explanation
Indices: 26211300--26211522 Score: 292
Period size: 119 Copynumber: 1.9 Consensus size: 120
26211290 TCCTCGTTCA
*
26211300 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
26211365 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * * **
26211420 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGTACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
26211482 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
26211523 CACCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
118 4 0.04
119 65 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:26211522 original size:40 final size:40
Alignment explanation
Indices: 26211298--26211522 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
26211288 GCTCCTCGTT
* *
26211298 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
26211338 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
26211378 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
26211418 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGTA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
26211457 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
26211498 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26211523 CACCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 119 0.73
41 11 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:26215153 original size:26 final size:25
Alignment explanation
Indices: 26215124--26215183 Score: 61
Period size: 26 Copynumber: 2.4 Consensus size: 25
26215114 AAAATCATCT
26215124 CTTTCAAAAACCAAGGTTT-AGAAAAA
1 CTTT-AAAAACCAA-GTTTGAGAAAAA
* *
26215150 CTTTGAAAACCCAATTTTGAGAAAAA
1 CTTT-AAAAACCAAGTTTGAGAAAAA
26215176 -TTTAAAAA
1 CTTTAAAAA
26215184 GAACCCATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
24 4 0.14
25 6 0.21
26 19 0.66
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (25 bp):
CTTTAAAAACCAAGTTTGAGAAAAA
Found at i:26216317 original size:27 final size:27
Alignment explanation
Indices: 26216275--26216504 Score: 208
Period size: 27 Copynumber: 8.5 Consensus size: 27
26216265 AGGCATAATC
* *
26216275 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * *
26216302 GTCATCTTACCCTACAGGGGCGTTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * ** *
26216329 GTCATTTTATCTTACATGAACATTACT
1 GTCATTTTACCCTACAGGGGCATTACG
** * *
26216356 GTCATTTTACCCTGTAGGGGTATTATG
1 GTCATTTTACCCTACAGGGGCATTACG
* * **
26216383 ATCATTTTACCCTACAAGGGCATTATA
1 GTCATTTTACCCTACAGGGGCATTACG
26216410 GTCATTTTACCCTACAGGGGCATTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* *** *
26216437 GTCATTTTACCTTACAAATGCAGTACG
1 GTCATTTTACCCTACAGGGGCATTACG
* * * *
26216464 ATCATTTTACCCTACCGGAGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACG
26216491 GTCATTTTACCCTA
1 GTCATTTTACCCTA
26216505 TCGGGGTTTA
Statistics
Matches: 155, Mismatches: 48, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
27 155 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.35
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACG
Found at i:26216522 original size:26 final size:27
Alignment explanation
Indices: 26216377--26216523 Score: 106
Period size: 27 Copynumber: 5.5 Consensus size: 27
26216367 CTGTAGGGGT
* *
26216377 ATTATGATCATTTTACCCTACAAGG-GC
1 ATTACGATCATTTTACCCTAC-CGGAGC
* * *
26216404 ATTA-TAGTCATTTTACCCTACAGGGGC
1 ATTACGA-TCATTTTACCCTACCGGAGC
* * **
26216431 ATTACGGTCATTTTACCTTA-CAAATGC
1 ATTACGATCATTTTACCCTACCGGA-GC
*
26216458 AGTACGATCATTTTACCCTACCGGAGC
1 ATTACGATCATTTTACCCTACCGGAGC
* *
26216485 ATTAC-AGTCATTTTACCCTATCGG-GG
1 ATTACGA-TCATTTTACCCTACCGGAGC
*
26216511 TTTACGATCATTT
1 ATTACGATCATTT
26216524 ACCTATTTTG
Statistics
Matches: 96, Mismatches: 17, Indels: 15
0.75 0.13 0.12
Matches are distributed among these distances:
26 16 0.17
27 78 0.81
28 2 0.02
ACGTcount: A:0.27, C:0.23, G:0.16, T:0.35
Consensus pattern (27 bp):
ATTACGATCATTTTACCCTACCGGAGC
Found at i:26234886 original size:80 final size:82
Alignment explanation
Indices: 26234767--26234952 Score: 272
Period size: 80 Copynumber: 2.3 Consensus size: 82
26234757 GCTACTCGTT
*
26234767 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
* *
26234831 GTTATAGTAAC-TCGCA
66 GATATAGTAACTTAGCA
* * *
26234847 CAAATGCCATCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
* *
26234911 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
26234928 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26234953 CATCATTCGA
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 84 0.89
81 10 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCG
GATATAGTAACTTAGCA
Found at i:26234952 original size:40 final size:40
Alignment explanation
Indices: 26234748--26234952 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
26234738 CAGAATTTAA
** *
26234748 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26234788 CCGGTTATAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26234828 CCGGTTATAGTAACTCGCACAAATGCCATCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
26234868 CCGGATTTAGTAACTCGCACCAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26234908 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26234948 CCGGA
1 CCGGA
26234953 CATCATTCGA
Statistics
Matches: 139, Mismatches: 20, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
39 7 0.05
40 119 0.86
41 13 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26242534 original size:63 final size:63
Alignment explanation
Indices: 26242435--26242559 Score: 241
Period size: 63 Copynumber: 2.0 Consensus size: 63
26242425 AGATCATTCA
26242435 TTCCCAAATCACGTACCTTCAGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGG
1 TTCCCAAATCACGTACCTTCAGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGG
*
26242498 TTCCCAAATCACGTACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGG
1 TTCCCAAATCACGTACCTTCAGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGG
26242560 ACATAGCCCG
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (63 bp):
TTCCCAAATCACGTACCTTCAGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGG
Found at i:26242590 original size:40 final size:40
Alignment explanation
Indices: 26242546--26242675 Score: 174
Period size: 40 Copynumber: 3.2 Consensus size: 40
26242536 GCTACTCGTT
*
26242546 CAAATGCCTTCGGGACATAGCCCGGTTATAGTATCTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
* *
26242586 CAAATGCCTTC-GGATCCTAGTCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGTTATAGTAACTCGCA
* *
26242626 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
*
26242666 CCAATGCCTT
1 CAAATGCCTT
26242676 TGAATCTTAG
Statistics
Matches: 80, Mismatches: 7, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
39 3 0.04
40 72 0.90
41 5 0.06
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
Found at i:26242665 original size:80 final size:82
Alignment explanation
Indices: 26242546--26242731 Score: 245
Period size: 80 Copynumber: 2.3 Consensus size: 82
26242536 GCTACTCGTT
* * *
26242546 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTATCTCGCACAAATGCCTTCGGATCCTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAATCCTAGTCCG
* *
26242610 GTTATAGTAAC-TCGCA
66 GATATAGTAACTTAGCA
* * * *
26242626 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACCAATGCCTTTGAATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAATCCTAGTCCG
* *
26242690 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
26242707 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26242732 CATCATTCGA
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 82 0.89
81 10 0.11
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAGTAACTCGCACAAATGCCTTCGAATCCTAGTCCG
GATATAGTAACTTAGCA
Found at i:26242691 original size:40 final size:41
Alignment explanation
Indices: 26242546--26242731 Score: 163
Period size: 40 Copynumber: 4.6 Consensus size: 41
26242536 GCTACTCGTT
* * *
26242546 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTATCTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTATAGTAACTCGCA
*
26242586 CAAATGCCTTCGGATCCTAGTCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTATAGTAACTCGCA
**
26242626 CAAATGCCTTCGGGA-CTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTC-GGATCTTAGTCCGGATTATAGTAACTCGCA
* * * * * *
26242666 CCAATGCCTTTGAATCTTAGTCCGGA-TATGGTCACTTAGCA
1 CAAATGCCTTCGGATCTTAGTCCGGATTATAGTAAC-TCGCA
*
26242707 CAAA-GCCTTCGGGA-CTTAGCCCGGA
1 CAAATGCCTTC-GGATCTTAGTCCGGA
26242732 CATCATTCGA
Statistics
Matches: 121, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
39 6 0.05
40 101 0.83
41 14 0.12
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTATAGTAACTCGCA
Found at i:26245713 original size:129 final size:129
Alignment explanation
Indices: 26245482--26245734 Score: 427
Period size: 129 Copynumber: 2.0 Consensus size: 129
26245472 GTGAATCTCG
*
26245482 GATCTCTATCCGACACGATAGAAATAGGTACCCCGTGTAATCTCACAATCTGAGAAACATACAAT
1 GATCTCTATCCGACACGATAGAAACAGGTACCCCGTGTAATCTCACAATCTGAGAAACATACAAT
*
26245547 TCGGCTAGTTTATCCAATGAAAAATCCGTACGCACGGGGAT-AAAGTGAGCCGACTTAGTCAGTC
66 TCAGCTAGTTTATCCAATGAAAAATCCGTACGCACGGGGATGAAA-TGAGCCGACTTAGTCAGTC
* *
26245611 GATCTCTATCCGACACGATAGAAACAGGTACCCCGTGTAATCTCACAATTTGAGAAACGTACAAT
1 GATCTCTATCCGACACGATAGAAACAGGTACCCCGTGTAATCTCACAATCTGAGAAACATACAAT
* * *
26245676 TCAGTTAGTTTATCCAATGAAAAATCCGTACGTACGGGGATGAAATGAGCTGACTTAGT
66 TCAGCTAGTTTATCCAATGAAAAATCCGTACGCACGGGGATGAAATGAGCCGACTTAGT
26245735 GGTTTATCCA
Statistics
Matches: 116, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
129 113 0.97
130 3 0.03
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.25
Consensus pattern (129 bp):
GATCTCTATCCGACACGATAGAAACAGGTACCCCGTGTAATCTCACAATCTGAGAAACATACAAT
TCAGCTAGTTTATCCAATGAAAAATCCGTACGCACGGGGATGAAATGAGCCGACTTAGTCAGTC
Found at i:26245757 original size:53 final size:53
Alignment explanation
Indices: 26245683--26245787 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 53
26245673 AATTCAGTTA
* *
26245683 GTTTATCCAATGAAAAATCCGTACGTACGGGGATGAAA-TGAGCTGACTTAGTG
1 GTTTATCCAATGAAAAATCCGTACGCACGGGGAT-AAAGTGAGCCGACTTAGTG
26245736 GTTTATCCAATGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACTTAGT
1 GTTTATCCAATGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACTTAGT
26245788 CAGTCTATCA
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
52 3 0.06
53 46 0.94
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (53 bp):
GTTTATCCAATGAAAAATCCGTACGCACGGGGATAAAGTGAGCCGACTTAGTG
Found at i:26258139 original size:15 final size:15
Alignment explanation
Indices: 26258119--26258149 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26258109 GCTAGTTATC
26258119 ATTATCACATGCTAA
1 ATTATCACATGCTAA
*
26258134 ATTATCACGTGCTAA
1 ATTATCACATGCTAA
26258149 A
1 A
26258150 CCTACATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (15 bp):
ATTATCACATGCTAA
Found at i:26261269 original size:21 final size:21
Alignment explanation
Indices: 26261236--26261286 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
26261226 GATTTTTCTG
*
26261236 ATAATGATATATAATAGTAAT
1 ATAAAGATATATAATAGTAAT
*
26261257 ATAAAGATGTATAATAGTAAT
1 ATAAAGATATATAATAGTAAT
26261278 ATAAAGATA
1 ATAAAGATA
26261287 ATATCAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (21 bp):
ATAAAGATATATAATAGTAAT
Found at i:26270173 original size:39 final size:39
Alignment explanation
Indices: 26270068--26270201 Score: 99
Period size: 39 Copynumber: 3.4 Consensus size: 39
26270058 CAAATTCAAT
* * * *
26270068 TACCAACACAAAGCCTACGGGACTTTAAGCT-CAGATATAG
1 TACCAGCACGAAGCCTAC-GGACCTTAA-CTCCAAATATAG
** * *
26270108 TACCAGTGCGAAGCGTGCGGACCTTAACTCCAAATATAG
1 TACCAGCACGAAGCCTACGGACCTTAACTCCAAATATAG
* * * ** * *
26270147 TACCAGCACGAAGCCTATGGATCTTAAGTCTGAATACAA
1 TACCAGCACGAAGCCTACGGACCTTAACTCCAAATATAG
*
26270186 TTCCAGCACGAAGCCT
1 TACCAGCACGAAGCCT
26270202 GCGGGTCTTT
Statistics
Matches: 73, Mismatches: 20, Indels: 3
0.76 0.21 0.03
Matches are distributed among these distances:
38 2 0.03
39 59 0.81
40 12 0.16
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.21
Consensus pattern (39 bp):
TACCAGCACGAAGCCTACGGACCTTAACTCCAAATATAG
Found at i:26270384 original size:39 final size:39
Alignment explanation
Indices: 26270116--26270851 Score: 855
Period size: 39 Copynumber: 18.7 Consensus size: 39
26270106 AGTACCAGTG
* * ** * * *
26270116 CGAAGCGTGCGGACCTTAACTCCAAATATAGTACCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
** * * *
26270155 CGAAGCCTATGGATCTTAAGTCTGAATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * * *
26270194 CGAAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCA
1 CGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCA
* * * *
26270234 CGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
1 CGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCA
* * * *
26270274 CGAAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCA
1 CGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCA
* * * *
26270314 CGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCA
1 CGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCA
*
26270354 CGAAGCCTGCGGACCTTAAGTCTGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* **
26270393 CGAAGCTTGC-GACCTTAAGTCTTGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * * * * *
26270431 CGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCTAGTA
1 CGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCA
26270471 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
26270510 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * * * *
26270549 CAAAGCCTGCAGGTCTTTAAGCCCGGATAAAATTCCAGCA
1 CGAAGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCA
* * * * *
26270589 -TATAGCCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCA
1 CGA-AGCCTGC-GGACCTTAAGTCCGGATACAATTCCAGCA
*
26270629 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * *
26270668 CAAAGCTTGCGGACCTTAAGTCTGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
*
26270707 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* * *
26270746 CAAAGCTTGCGGACCTTAAGTCTGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
*
26270785 CGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCA
1 CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
* *
26270824 TGAAGCCTGCGGACCTCAAGTCCGGATA
1 CGAAGCCTGCGGACCTTAAGTCCGGATA
26270852 TACATCAAAT
Statistics
Matches: 615, Mismatches: 73, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
38 35 0.06
39 342 0.56
40 237 0.39
41 1 0.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.22
Consensus pattern (39 bp):
CGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCA
Found at i:26270620 original size:275 final size:274
Alignment explanation
Indices: 26270149--26270833 Score: 998
Period size: 275 Copynumber: 2.5 Consensus size: 274
26270139 AAATATAGTA
* * * * *
26270149 CCAGCACGAAGCCTATGGATCTTAAGTCTGAATACAATTCCAGCACGAAGCCTGCGGGTCTTTAA
1 CCAGCACGAAGCCT-TGGGTCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGC-GGACCTTAA
* * * * * *
26270214 GCCCAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCCAGCACGAAG
64 GTCCGGATACAATTCCAGCACGAAGCCTG-CGGACCTTAAGTCCGGATACAATTCCAGCACGAAG
* * * *
26270279 CCTGCGGGTCTTTAAGCCCAGATACAATTCCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATAC
128 CCTGCAGGTCTTTAAGCCCAGATAAAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATAC
* *
26270344 AATTCCAGCACGAAGCCTGCGGACCTTAAGTCTGGATACAATTCCAGCACGAAGCTTGC-GACCT
193 AATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCTTGCGGACCT
*
26270408 TAAGTCTTGATACAATT
258 TAAGTCTGGATACAATT
* * *
26270425 CCAGCACGAAGCCTGTGGGTCTTTAAGCCCGGATACAATTCTAGTACGAAGCCTGCGGACCTTAA
1 CCAGCACGAAGCCT-TGGGTC-TTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAA
*
26270490 GTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGC
64 GTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGC
* *
26270555 CTGCAGGTCTTTAAGCCCGGATAAAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCAGATAC
129 CTGCAGGTCTTTAAGCCCAGATAAAATTCCAGCACGA-AGCCTGCGGGTCTTTAAGCCCAGATAC
*
26270619 AATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCTTGCGGACCT
193 AATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCTTGCGGACCT
26270684 TAAGTCTGGATACAATT
258 TAAGTCTGGATACAATT
* * *
26270701 CCAGCACGAAG-CTTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCTTGCGGACCTTAA
1 CCAGCACGAAGCCTTG-GG-TCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAA
* * *
26270765 GTCTGGATACAATTCCAGCACGAAGCTTGCGGACCTTAAGTCCGGATACAATTCCAGCATGAAGC
64 GTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGC
26270830 CTGC
129 CTGC
26270834 GGACCTCAAG
Statistics
Matches: 368, Mismatches: 36, Indels: 11
0.89 0.09 0.03
Matches are distributed among these distances:
274 3 0.01
275 250 0.68
276 86 0.23
277 29 0.08
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (274 bp):
CCAGCACGAAGCCTTGGGTCTTAAGTCCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGT
CCGGATACAATTCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACGAAGCCT
GCAGGTCTTTAAGCCCAGATAAAATTCCAGCACGAAGCCTGCGGGTCTTTAAGCCCAGATACAAT
TCCAGCACGAAGCCTGCGGACCTTAAGTCCGGATACAATTCCAGCACAAAGCTTGCGGACCTTAA
GTCTGGATACAATT
Found at i:26275343 original size:13 final size:13
Alignment explanation
Indices: 26275327--26275361 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
26275317 CCAGGGACAT
26275327 GGGCATGTGCCCA
1 GGGCATGTGCCCA
26275340 GGGCATGTGCCCA
1 GGGCATGTGCCCA
*
26275353 GGGCTTGTG
1 GGGCATGTG
26275362 AAGTCTGCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.11, C:0.26, G:0.43, T:0.20
Consensus pattern (13 bp):
GGGCATGTGCCCA
Found at i:26284814 original size:38 final size:38
Alignment explanation
Indices: 26284753--26284865 Score: 136
Period size: 38 Copynumber: 2.9 Consensus size: 38
26284743 ATTTGATGTG
* *
26284753 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGTTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
26284793 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * * *
26284831 TATCTGGGATAAATCCCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
26284866 TTATATTCGG
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
38 52 0.80
39 5 0.08
40 8 0.12
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.27
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:26284866 original size:38 final size:38
Alignment explanation
Indices: 26284769--26284876 Score: 144
Period size: 38 Copynumber: 2.8 Consensus size: 38
26284759 GGCTTAAAGA
* ** *
26284769 CCCGCAGGCTTCGTGTTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
*
26284807 CCCGCAGGCTTCGTGCTGGTATTATATCTGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * *
26284845 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
26284877 CCTTCGTGCC
Statistics
Matches: 61, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 61 1.00
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.30
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:26287492 original size:48 final size:48
Alignment explanation
Indices: 26287425--26287799 Score: 305
Period size: 48 Copynumber: 7.8 Consensus size: 48
26287415 ATATTAGGGT
* * *
26287425 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTAGGATTGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGGCTTGA
* * * * ** **
26287473 TATGAGAGCTAATGTAAGACCATGTCTGGGACATGGCATCAACCTCAA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGGCTTGA
* * * * *
26287521 TATGTGAGCCAATGTAAGACCATGTTCT-GAACATGGCA-TCGACATTGA
1 TATGAGAGCTAGTGTAAGACCATGTT-TGGAACATGGCATTAGGC-TTGA
* * * * *
26287569 TATGAGAGCTAGTATAAGACCATGTCTGGGACATGGCA-TCGGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGG-CTTGA
* * *
26287617 TATGTA-AGCCAATGTAAGACCATGTTTGGAACATGGCA-TCGGCATTGA
1 TATG-AGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGGC-TTGA
* * ** *
26287665 TATGAGAGTTAGTGTAAGACCATGTCTGGGGCATGGCATT-GGCCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGG-CTTGA
* * * * * * *
26287713 TATGTGAGCCAGTGTAAGCCCTTATTTGGAACATGGCATCGATGCTT-A
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT-TAGGCTTGA
*
26287761 TATGAGAGCTAGTGTAAGACCATGTTTAGAACATGGCAT
1 TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCAT
26287800 CGGCATCTTA
Statistics
Matches: 256, Mismatches: 60, Indels: 22
0.76 0.18 0.07
Matches are distributed among these distances:
47 4 0.02
48 244 0.95
49 7 0.03
50 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTTTGGAACATGGCATTAGGCTTGA
Found at i:26287589 original size:96 final size:97
Alignment explanation
Indices: 26287425--26287803 Score: 527
Period size: 96 Copynumber: 3.9 Consensus size: 97
26287415 ATATTAGGGT
* * * *
26287425 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCAT-TAGGATTGATATGAGAGCTAATGTA
1 TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGAGCATTGATATGAGAGCTAGTGTA
** *
26287489 AGACCATGTCTGGGACATGGCATCAACCTCAA
66 AGACCATGTCTGGGACATGGCATCGGCCTCGA
*
26287521 TATGTGAGCCAATGTAAGACCATGTTCT-GAACATGGCATCGA-CATTGATATGAGAGCTAGTAT
1 TATGTGAGCCAATGTAAGACCATGTT-TGGAACATGGCATCGAGCATTGATATGAGAGCTAGTGT
26287584 AAGACCATGTCTGGGACATGGCATCGGCCTCGA
65 AAGACCATGTCTGGGACATGGCATCGGCCTCGA
* *
26287617 TATGTAAGCCAATGTAAGACCATGTTTGGAACATGGCATCG-GCATTGATATGAGAGTTAGTGTA
1 TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGAGCATTGATATGAGAGCTAGTGTA
* *
26287681 AGACCATGTCTGGGGCATGGCATTGGCCTCGA
66 AGACCATGTCTGGGACATGGCATCGGCCTCGA
* * * *
26287713 TATGTGAGCCAGTGTAAGCCCTTATTTGGAACATGGCATCGATGC-TT-ATATGAGAGCTAGTGT
1 TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGA-GCATTGATATGAGAGCTAGTGT
* * *
26287776 AAGACCATGTTTAGAACATGGCATCGGC
65 AAGACCATGTCTGGGACATGGCATCGGC
26287804 ATCTTACCCT
Statistics
Matches: 253, Mismatches: 24, Indels: 12
0.88 0.08 0.04
Matches are distributed among these distances:
95 1 0.00
96 246 0.97
97 4 0.02
98 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (97 bp):
TATGTGAGCCAATGTAAGACCATGTTTGGAACATGGCATCGAGCATTGATATGAGAGCTAGTGTA
AGACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:26287700 original size:144 final size:142
Alignment explanation
Indices: 26287425--26287806 Score: 399
Period size: 144 Copynumber: 2.6 Consensus size: 142
26287415 ATATTAGGGT
* *
26287425 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTAGGATTGATATGAGAGCTAATGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCA-TCGG-CTGATATGAGAGCTAATGTAA
* * ** * *
26287490 GACCATGTCTGGGACATGGCATCAACCTCAATATGTGAGCCAATGTAAGACCATGTTCTGAACAT
64 GACCATGTTTGGAACATGGCATCGGCATCAATATGAGAGCCAATGTAAGACCATGTTCTGAACAT
*
26287555 GGCATCGACATTGA
129 GGCATCGACATCGA
* * * * * *
26287569 TATGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGCCTCGATATGTA-AGCCAATGTA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGG-CT-GATATG-AGAGCTAATGTA
** ** * **
26287633 AGACCATGTTTGGAACATGGCATCGGCATTGATATGAGAGTTAGTGTAAGACCATG-TCTGGGGC
63 AGACCATGTTTGGAACATGGCATCGGCATCAATATGAGAGCCAATGTAAGACCATGTTCT-GAAC
* * *
26287697 ATGGCATTGGCCTCGA
127 ATGGCATCGACATCGA
* * * * *
26287713 TATGTGAGCCAGTGTAAGCCCTTATTTGGAACATGGCATCGATGCTTATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCG--GCTGATATGAGAGCTAATGTAA
*
26287778 GACCATGTTTAGAACATGGCATCGGCATC
64 GACCATGTTTGGAACATGGCATCGGCATC
26287807 TTACCCTTTT
Statistics
Matches: 193, Mismatches: 39, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
143 8 0.04
144 181 0.94
145 3 0.02
146 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (142 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCTGATATGAGAGCTAATGTAAGA
CCATGTTTGGAACATGGCATCGGCATCAATATGAGAGCCAATGTAAGACCATGTTCTGAACATGG
CATCGACATCGA
Found at i:26290811 original size:21 final size:20
Alignment explanation
Indices: 26290785--26290823 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
26290775 GTTAAGAGGA
26290785 CACACGGGCGTGTCGCCCTCC
1 CACACGGGCGTGT-GCCCTCC
*
26290806 CACACGGGTGTGTGCCCT
1 CACACGGGCGTGTGCCCT
26290824 TGTTTGCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.41, G:0.31, T:0.18
Consensus pattern (20 bp):
CACACGGGCGTGTGCCCTCC
Found at i:26296149 original size:47 final size:47
Alignment explanation
Indices: 26296044--26296251 Score: 168
Period size: 47 Copynumber: 4.2 Consensus size: 47
26296034 TGCATATAGT
* * ** * *
26296044 CACATATTACACACCGAAGCCATAGCCCAACCATGGTC-T-TACATGGAT
1 CACATA-T-CACACCGATGCCATATCCCAAATATGGTCTTATACA-GAAG
* * * *
26296092 CACATATCACACTGATGTCATATCCCAGATATGGTCTTATACAGTAG
1 CACATATCACACCGATGCCATATCCCAAATATGGTCTTATACAGAAG
*
26296139 CACATATCACACCGATGCCATATCCCAAATATGGTCTTATACGGAAG
1 CACATATCACACCGATGCCATATCCCAAATATGGTCTTATACAGAAG
* * * *
26296186 CACATAATCACATCTCTCCGATGCCATAGCCCAACTATGGTCTTATACGGAAAT
1 CACAT-ATCACA-----CCGATGCCATATCCCAAATATGGTCTTATACAG-AAG
26296240 CACATGATCACA
1 CACAT-ATCACA
26296252 TCACATCGAT
Statistics
Matches: 133, Mismatches: 18, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
46 22 0.17
47 51 0.38
48 16 0.12
53 31 0.23
54 13 0.10
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (47 bp):
CACATATCACACCGATGCCATATCCCAAATATGGTCTTATACAGAAG
Found at i:26296219 original size:53 final size:51
Alignment explanation
Indices: 26296057--26296305 Score: 194
Period size: 54 Copynumber: 4.9 Consensus size: 51
26296047 ATATTACACA
* ** * * *
26296057 CCGAAGCCATAGCCCAACCATGGTCTTACATGG-ATCACATATCACA--CT
1 CCGATGCCATAGCCCAAATATGGTCTTATACGGAAGCACATATCACATCCT
* * * * *
26296105 --GATGTCATATCCCAGATATGGTCTTATACAGTAGCACATATCACA----
1 CCGATGCCATAGCCCAAATATGGTCTTATACGGAAGCACATATCACATCCT
*
26296150 CCGATGCCATATCCCAAATATGGTCTTATACGGAAGCACATAATCACATCTCT
1 CCGATGCCATAGCCCAAATATGGTCTTATACGGAAGCACAT-ATCACATC-CT
* *
26296203 CCGATGCCATAGCCCAACTATGGTCTTATACGGAAATCACATGATCACATCACAT
1 CCGATGCCATAGCCCAAATATGGTCTTATACGG-AAGCACAT-ATCACATC-C-T
* ** * *
26296258 -CGATGTCATAGCCCAGCTATGGTCTTATACGAAAATCACATATCACAT
1 CCGATGCCATAGCCCAAATATGGTCTTATACG-GAAGCACATATCACAT
26296306 GTTGCCATGG
Statistics
Matches: 167, Mismatches: 22, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
46 22 0.13
47 47 0.28
48 6 0.04
53 38 0.23
54 53 0.32
55 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (51 bp):
CCGATGCCATAGCCCAAATATGGTCTTATACGGAAGCACATATCACATCCT
Found at i:26296243 original size:46 final size:49
Alignment explanation
Indices: 26296204--26296330 Score: 123
Period size: 54 Copynumber: 2.5 Consensus size: 49
26296194 CACATCTCTC
*
26296204 CGATGCCATAGCCCAACTATGGTCTTATACGGAAATCACATGATCACATCACA
1 CGATGCCATAGCCCAACTATGGTCTTATACGAAAATCAC---AT-ACATCACA
* *
26296257 TCGATGTCATAGCCCAGCTATGGTCTTATACGAAAATCACAT--ATCACA
1 -CGATGCCATAGCCCAACTATGGTCTTATACGAAAATCACATACATCACA
* * * * *
26296305 TGTTGCCATGGTCCAACCATGGTCTT
1 CGATGCCATAGCCCAACTATGGTCTT
26296331 TTCCGTCAAT
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
47 19 0.30
48 6 0.10
51 2 0.03
54 36 0.57
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (49 bp):
CGATGCCATAGCCCAACTATGGTCTTATACGAAAATCACATACATCACA
Found at i:26300934 original size:21 final size:21
Alignment explanation
Indices: 26300908--26300952 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
26300898 GTTTATCATG
26300908 CATCAAACATTCATATTCCTC
1 CATCAAACATTCATATTCCTC
*
26300929 CATCAAACATTCATATTTCTC
1 CATCAAACATTCATATTCCTC
26300950 CAT
1 CAT
26300953 TAATAAACGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.36
Consensus pattern (21 bp):
CATCAAACATTCATATTCCTC
Found at i:26303314 original size:27 final size:26
Alignment explanation
Indices: 26303248--26303317 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 26
26303238 ATAAATATTG
*
26303248 GTAAAATTACCGAAATACCCTTGTAGT
1 GTAAAA-TACCGTAATACCCTTGTAGT
26303275 GTAAAATAGCCGTAATACCCTTGTAGT
1 GTAAAATA-CCGTAATACCCTTGTAGT
26303302 GTAAAATGACCGTAAT
1 GTAAAAT-ACCGTAAT
26303318 GTCCCTGTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 2 0.05
27 37 0.93
28 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (26 bp):
GTAAAATACCGTAATACCCTTGTAGT
Found at i:26303705 original size:127 final size:127
Alignment explanation
Indices: 26303471--26303724 Score: 348
Period size: 127 Copynumber: 2.0 Consensus size: 127
26303461 TAGACGGAGG
***
26303471 AAGTGTACGGCATGTAGCCATCCTGTATAAGGCTTTCAGCCTTTCTGTGATACTTAGGGCTAATA
1 AAGTGTACGGCATGTAGCCATCCTGTATAAGGCTTTCAGCCTTTCTCCAATACTTAGGGCTAATA
* *
26303536 GTCGTTCTATTAACTGGCAGCGTGGCTGAGATACTTACGGCCTTTAGCCGTCCTGTCTATGA
66 GTCGTTCTAGTAACTGGCAGCGTGGCTGAGATACTTACGGCCTTTAGCCGTACTGTCTATGA
* * * * * * *
26303598 AAGTGTATGGCCTGTAGCCGTCCTGTTTAAGGCTTTCAGCCTTTCTCCAATATTTATGGCTTATA
1 AAGTGTACGGCATGTAGCCATCCTGTATAAGGCTTTCAGCCTTTCTCCAATACTTAGGGCTAATA
* * * *
26303663 GTCGTTCTGGTAACTGGCAGCGTTGCT-ACGATATTTATGGCCTTTAGCCGTACTGTCTATGA
66 GTCGTTCTAGTAACTGGCAGCGTGGCTGA-GATACTTACGGCCTTTAGCCGTACTGTCTATGA
26303725 CATTGAGTCG
Statistics
Matches: 110, Mismatches: 16, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
126 1 0.01
127 109 0.99
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.35
Consensus pattern (127 bp):
AAGTGTACGGCATGTAGCCATCCTGTATAAGGCTTTCAGCCTTTCTCCAATACTTAGGGCTAATA
GTCGTTCTAGTAACTGGCAGCGTGGCTGAGATACTTACGGCCTTTAGCCGTACTGTCTATGA
Found at i:26305507 original size:27 final size:27
Alignment explanation
Indices: 26305444--26305495 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
26305434 CCCAATATTG
*
26305444 GTAAAATTACTGAAATACCCTTGTAGT
1 GTAAAATGACTGAAATACCCTTGTAGT
*
26305471 GTAAAATGACTGTAATACCCTTGTA
1 GTAAAATGACTGAAATACCCTTGTA
26305496 TGGTGGAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (27 bp):
GTAAAATGACTGAAATACCCTTGTAGT
Found at i:26305891 original size:127 final size:127
Alignment explanation
Indices: 26305654--26305891 Score: 327
Period size: 127 Copynumber: 1.9 Consensus size: 127
26305644 GTATGGCCTA
*
26305654 TAGCCGTCCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTATAGCCGTTCTGTTAAC
1 TAGCCATCCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTATAGCCGTTCTGTTAAC
* * * * *** *
26305719 TGGTAGCATTGCTAAGATATTTATGACCTTTAGCTGTCCTGTCTACAAAAGTGTACGTCTTG
66 TAGCAGCATTGCTAAGATATTTACGACCTTTACCCACCCTATCTACAAAAGTGTACGTCTTG
*
26305781 TAGCCATCCTGTATAAGGCTTTCATCCTTTCTGCGATACTTATGGCTTATAG-CGATTCTGTTAA
1 TAGCCATCCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTATAGCCG-TTCTGTTAA
** *
26305845 CTAGCAGTGTTGCTACA-ATATTTACGGCCTTTACCCACCCTATCTAC
65 CTAGCAGCATTGCTA-AGATATTTACGACCTTTACCCACCCTATCTAC
26305892 GATGTTGAGT
Statistics
Matches: 96, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
126 2 0.02
127 93 0.97
128 1 0.01
ACGTcount: A:0.22, C:0.24, G:0.18, T:0.37
Consensus pattern (127 bp):
TAGCCATCCTGTATAAGGCTTTCAGCCTTTCTGCGATACTTATGGCTTATAGCCGTTCTGTTAAC
TAGCAGCATTGCTAAGATATTTACGACCTTTACCCACCCTATCTACAAAAGTGTACGTCTTG
Found at i:26305912 original size:22 final size:22
Alignment explanation
Indices: 26305887--26305934 Score: 78
Period size: 22 Copynumber: 2.2 Consensus size: 22
26305877 ACCCACCCTA
*
26305887 TCTACGATGTTGAGTCATCCTG
1 TCTACGATGTTGAGCCATCCTG
*
26305909 TCTACGATGTTGAGCCGTCCTG
1 TCTACGATGTTGAGCCATCCTG
26305931 TCTA
1 TCTA
26305935 TGGCATTGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.25, G:0.23, T:0.35
Consensus pattern (22 bp):
TCTACGATGTTGAGCCATCCTG
Found at i:26311930 original size:40 final size:40
Alignment explanation
Indices: 26311871--26312088 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
26311861 TGGATGAGAA
* * *
26311871 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
*
26311911 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26311951 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26311991 CCGGGCTAAGTCCCGAAGGCATTGGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * * * *
26312031 CCAGGCTATGTCCCAAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
26312071 CC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26312089 TACTTGGCTT
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 15 0.09
40 144 0.91
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26321231 original size:14 final size:14
Alignment explanation
Indices: 26321212--26321250 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
26321202 TCAAAACAAA
26321212 AATTAAGAACACAT
1 AATTAAGAACACAT
26321226 AATTAAGAACACAT
1 AATTAAGAACACAT
26321240 AATTAAGAACA
1 AATTAAGAACA
26321251 AGATAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.21
Consensus pattern (14 bp):
AATTAAGAACACAT
Found at i:26321482 original size:14 final size:14
Alignment explanation
Indices: 26321463--26321501 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
26321453 TCAAAACAAA
26321463 AATTAAGAACACAT
1 AATTAAGAACACAT
26321477 AATTAAGAACACAT
1 AATTAAGAACACAT
26321491 AATTAAGAACA
1 AATTAAGAACA
26321502 AGATAAATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.59, C:0.13, G:0.08, T:0.21
Consensus pattern (14 bp):
AATTAAGAACACAT
Found at i:26321639 original size:251 final size:251
Alignment explanation
Indices: 26321196--26321697 Score: 1004
Period size: 251 Copynumber: 2.0 Consensus size: 251
26321186 TCAATATCCT
26321196 GGGATATCAAAACAAAAATTAAGAACACATAATTAAGAACACATAATTAAGAACAAGATAAATAT
1 GGGATATCAAAACAAAAATTAAGAACACATAATTAAGAACACATAATTAAGAACAAGATAAATAT
26321261 ATATCATACGATTCAGAAAATAATAACAAGATTCATCTTAGGTCTCATTCCCCTTAGGTATTTAG
66 ATATCATACGATTCAGAAAATAATAACAAGATTCATCTTAGGTCTCATTCCCCTTAGGTATTTAG
26321326 GGGTTTTAGTTCCTAATTAAATAAGAAAACATCTTAAAAGAATAAAGAATACAAAACATAAAGAA
131 GGGTTTTAGTTCCTAATTAAATAAGAAAACATCTTAAAAGAATAAAGAATACAAAACATAAAGAA
26321391 AGCCCAAAACTCCTGAAGGGAAATTGAGGCGAGATCTTTAGTCTTGATGATGAATA
196 AGCCCAAAACTCCTGAAGGGAAATTGAGGCGAGATCTTTAGTCTTGATGATGAATA
26321447 GGGATATCAAAACAAAAATTAAGAACACATAATTAAGAACACATAATTAAGAACAAGATAAATAT
1 GGGATATCAAAACAAAAATTAAGAACACATAATTAAGAACACATAATTAAGAACAAGATAAATAT
26321512 ATATCATACGATTCAGAAAATAATAACAAGATTCATCTTAGGTCTCATTCCCCTTAGGTATTTAG
66 ATATCATACGATTCAGAAAATAATAACAAGATTCATCTTAGGTCTCATTCCCCTTAGGTATTTAG
26321577 GGGTTTTAGTTCCTAATTAAATAAGAAAACATCTTAAAAGAATAAAGAATACAAAACATAAAGAA
131 GGGTTTTAGTTCCTAATTAAATAAGAAAACATCTTAAAAGAATAAAGAATACAAAACATAAAGAA
26321642 AGCCCAAAACTCCTGAAGGGAAATTGAGGCGAGATCTTTAGTCTTGATGATGAATA
196 AGCCCAAAACTCCTGAAGGGAAATTGAGGCGAGATCTTTAGTCTTGATGATGAATA
26321698 CTGGCTTCTG
Statistics
Matches: 251, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
251 251 1.00
ACGTcount: A:0.46, C:0.14, G:0.15, T:0.26
Consensus pattern (251 bp):
GGGATATCAAAACAAAAATTAAGAACACATAATTAAGAACACATAATTAAGAACAAGATAAATAT
ATATCATACGATTCAGAAAATAATAACAAGATTCATCTTAGGTCTCATTCCCCTTAGGTATTTAG
GGGTTTTAGTTCCTAATTAAATAAGAAAACATCTTAAAAGAATAAAGAATACAAAACATAAAGAA
AGCCCAAAACTCCTGAAGGGAAATTGAGGCGAGATCTTTAGTCTTGATGATGAATA
Found at i:26326937 original size:28 final size:28
Alignment explanation
Indices: 26326905--26326974 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
26326895 AATGAGATTG
26326905 GCACTAAGTGTGCGAGTTT-AAT-TGTATA
1 GCACTAAGTGTGCGAGTTTGAATAT-TA-A
*
26326933 GCACTAAGTGTGCGAGTTTGACTATTAA
1 GCACTAAGTGTGCGAGTTTGAATATTAA
26326961 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26326975 GACTTACTAT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 34 0.87
29 4 0.10
30 1 0.03
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGAATATTAA
Found at i:26334477 original size:28 final size:28
Alignment explanation
Indices: 26334445--26334514 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
26334435 AATGAGATTG
*
26334445 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
26334473 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
26334501 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26334515 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:26352380 original size:25 final size:25
Alignment explanation
Indices: 26352346--26352397 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
26352336 ATTATAAATG
26352346 AATGTTATATGCTTTGATATTGCAT
1 AATGTTATATGCTTTGATATTGCAT
26352371 AATGTTATATGCTTTGATATTGCAT
1 AATGTTATATGCTTTGATATTGCAT
26352396 AA
1 AA
26352398 AATTTGTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (25 bp):
AATGTTATATGCTTTGATATTGCAT
Found at i:26358464 original size:40 final size:39
Alignment explanation
Indices: 26358403--26358628 Score: 226
Period size: 40 Copynumber: 5.7 Consensus size: 39
26358393 GGATGATAAT
* * *
26358403 CGGGCTAAGTCTCG-AGAGCATTTGAGCTAGTGGCTACT-TC
1 CGGGCTAAGTCCCGAAG-GCATTTGAGCGAGT-ACTA-TATC
* *
26358443 CGGGCTAAGTCTCGAAGGCATTTGTGCGAGCTACTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATATC
** * *
26358483 CGGGCTAAGTCCCGAAGGTGTTTGTGCGAGCTATTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATATC
*
26358523 CGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTATTATA-C
1 CGGGCTAAGTCCCGAAGGCATTTG-AGCGAG-TACTATATC
* * * *
26358562 TGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TACTATATC
26358602 CGGGCTAAGTCCCGAAGGCATTTGAGC
1 CGGGCTAAGTCCCGAAGGCATTTGAGC
26358629 TAATGGCTAT
Statistics
Matches: 163, Mismatches: 17, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
39 35 0.21
40 125 0.77
41 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CGGGCTAAGTCCCGAAGGCATTTGAGCGAGTACTATATC
Found at i:26358605 original size:79 final size:80
Alignment explanation
Indices: 26358442--26358625 Score: 262
Period size: 79 Copynumber: 2.3 Consensus size: 80
26358432 GTGGCTACTT
* * **
26358442 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
* * *
26358507 TGCGAGCTATTATAT
66 TGCAAGCTACTATAA
* * *
26358522 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTATTATA-CTGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
*
26358586 TGCAAGTTACTATAA
66 TGCAAGCTACTATAA
26358601 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26358626 AGCTAATGGC
Statistics
Matches: 93, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 58 0.62
80 35 0.38
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTACGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
TGCAAGCTACTATAA
Found at i:26358658 original size:79 final size:78
Alignment explanation
Indices: 26358442--26358648 Score: 220
Period size: 79 Copynumber: 2.6 Consensus size: 78
26358432 GTGGCTACTT
* * * **
26358442 CCGGGCTAAGTCTCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGA-ATACTATATCC-GGCTAAGTCCCGAAGGCATTTG
* * *
26358507 TGCGAGCTATTATAT
64 TGCAAGCTACTATAA
* * *
26358522 CCGGGCTAAGTCCCGAAGGCATTTGTA-CGAGTTATTATA-CTGGGCTAAGTCCCGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTG-AGCGA-ATACTATATC-CGGCTAAGTCCCGAAGGCATTT
*
26358585 GTGCAAGTTACTATAA
63 GTGCAAGCTACTATAA
* *
26358601 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAATGGCTATATCCGGCTAA
1 CCGGGCTAAGTCCCGAAGGCATTTGAGCGAAT-ACTATATCCGGCTAA
26358649 ACTCCGAAGG
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 2 0.02
79 69 0.65
80 35 0.33
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTTGAGCGAATACTATATCCGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACTATAA
Found at i:26363871 original size:412 final size:412
Alignment explanation
Indices: 26363100--26363923 Score: 1427
Period size: 412 Copynumber: 2.0 Consensus size: 412
26363090 ACTCAAAGAG
26363100 ACTTAAATCTACGACAAAGACATTGGCTGGAGTTGTTGAAAGAATATTAGCTTGTCATTGACTAT
1 ACTTAAATCTACGACAAAGACATTGGCTGGAGTTGTTGAAAGAATATTAGCTTGTCATTGACTAT
26363165 CACCCGGGAAAGGCTAATGTGGTTGCGGTGGCCTTAAGTCGTAAATCACTGTTTGCTTTGCGAGC
66 CACCCGGGAAAGGCTAATGTGGTTGCGGTGGCCTTAAGTCGTAAATCACTGTTTGCTTTGCGAGC
26363230 GATGAACGTACACTTGTCCGATCTATCCGACAACGTGTTAGTAGCTGAATTAAAGGCCAAACCAT
131 GATGAACGTACACTTGTCCGATCTATCCGACAACGTGTTAGTAGCTGAATTAAAGGCCAAACCAT
* * * * *
26363295 TATTGATTCATCAAATTCGTGAAGCTTAGAAAGTCGATGATGAACTGGTTGCAAAACGGGCTGAA
196 TATTGATTCATCAAATTCGGGAAGCTCAGAAAGTCAATGACGAACTGGTTGCAAAACGGGCTAAA
* *
26363360 TGTGTTTCGAATATGGAATCAGAGTTTCAAATTGATGATGACGATTGTTTGAGGTTCAGAAGTCG
261 TGTGTTTCGAACATGGAATCAGAGTTTCAAATTGATGACGACGATTGTTTGAGGTTCAGAAGTCG
* *
26363425 GTTGTATGTTCCAAGAAATTTAGAACTCATTTCGATGATTCTGAACGAAGCTCATTGTAGCCAAA
326 GTTGTACGTTCCAAGAAATTCAGAACTCATTTCGATGATTCTGAACGAAGCTCATTGTAGCCAAA
* *
26363490 TGTCGATTCACCCGGGGAGTAC
391 TATCAATTCACCCGGGGAGTAC
*
26363512 ACTTAAATCTACGACAAAGACATTGGCTGGAGTTGTTGAAAGATTATTAGCTTGTCATTGACTAT
1 ACTTAAATCTACGACAAAGACATTGGCTGGAGTTGTTGAAAGAATATTAGCTTGTCATTGACTAT
26363577 CACCCGGGAAAGGCTAATGTGGTTGCGGAT-GCCTTAAGTCGTAAATCACTGTTTGCTTTGCGAG
66 CACCCGGGAAAGGCTAATGTGGTTGCGG-TGGCCTTAAGTCGTAAATCACTGTTTGCTTTGCGAG
26363641 CGATGAACGTACACTTGTCCGATCTATCCGACAACGTGTTAGTAGCTGAATTAAAGGCCAAACCA
130 CGATGAACGTACACTTGTCCGATCTATCCGACAACGTGTTAGTAGCTGAATTAAAGGCCAAACCA
* *
26363706 TTATTGATTCATCAAATTCGGGAGGCTCAGAAAGTCAATGACGAATTGGTTGCAAAACGGGCTAA
195 TTATTGATTCATCAAATTCGGGAAGCTCAGAAAGTCAATGACGAACTGGTTGCAAAACGGGCTAA
* *
26363771 ATGTGTTTCGAACATGGAATCTGAGTTTCAAATTGATGACGACGATTGTTTGAGGTTCCGAAGTC
260 ATGTGTTTCGAACATGGAATCAGAGTTTCAAATTGATGACGACGATTGTTTGAGGTTCAGAAGTC
* * * * *
26363836 GTTTGTGCGTTCCAAGGAATTCATG-ACTTATTTCGATGATTCTGAACGAAGCTCATTGTAGCCG
325 GGTTGTACGTTCCAAGAAATTCA-GAACTCATTTCGATGATTCTGAACGAAGCTCATTGTAGCCA
26363900 AATATCAATTCACCCGGGGAGTAC
389 AATATCAATTCACCCGGGGAGTAC
26363924 GAAAATGTAC
Statistics
Matches: 389, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
412 387 0.99
413 2 0.01
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (412 bp):
ACTTAAATCTACGACAAAGACATTGGCTGGAGTTGTTGAAAGAATATTAGCTTGTCATTGACTAT
CACCCGGGAAAGGCTAATGTGGTTGCGGTGGCCTTAAGTCGTAAATCACTGTTTGCTTTGCGAGC
GATGAACGTACACTTGTCCGATCTATCCGACAACGTGTTAGTAGCTGAATTAAAGGCCAAACCAT
TATTGATTCATCAAATTCGGGAAGCTCAGAAAGTCAATGACGAACTGGTTGCAAAACGGGCTAAA
TGTGTTTCGAACATGGAATCAGAGTTTCAAATTGATGACGACGATTGTTTGAGGTTCAGAAGTCG
GTTGTACGTTCCAAGAAATTCAGAACTCATTTCGATGATTCTGAACGAAGCTCATTGTAGCCAAA
TATCAATTCACCCGGGGAGTAC
Found at i:26366948 original size:40 final size:40
Alignment explanation
Indices: 26366887--26367132 Score: 224
Period size: 40 Copynumber: 6.2 Consensus size: 40
26366877 AGATGATAAT
* *
26366887 CGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTGGCTAAT-TC
1 CGGGCTAAGTCCCGAAG-GCATTTGTGCGAGT-GCTAATATC
* * *
26366927 TGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATC
**
26366967 CGGGCTAAGTCCCGAAGGTGTTTGTGCGA--GCTATTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTA--ATATC
*
26367007 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT--TATTATAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATAT-C
* * * *
26367046 CGGGCTAAGTCTCGAAGGCATTTGTGCAAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TGCTAATATC
* *
26367086 CGGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGT-GCTAATATC
26367126 C-GGCTAA
1 CGGGCTAA
26367133 ACTCCGAAGG
Statistics
Matches: 171, Mismatches: 22, Indels: 27
0.78 0.10 0.12
Matches are distributed among these distances:
37 2 0.01
38 3 0.02
39 38 0.22
40 122 0.71
41 5 0.03
42 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGCTAATATC
Found at i:26367089 original size:79 final size:80
Alignment explanation
Indices: 26366928--26367109 Score: 267
Period size: 79 Copynumber: 2.3 Consensus size: 80
26366918 GGCTAATTCT
* **
26366928 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * *
26366993 CGAGCTATTATATCC
66 CAAGCTACTATAACC
* * *
26367008 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCTCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
26367072 CAAGTTACTATAACC
66 CAAGCTACTATAACC
26367087 GGGCTAAGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
26367110 AGCTAGTGGC
Statistics
Matches: 92, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
79 58 0.63
80 34 0.37
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
CAAGCTACTATAACC
Found at i:26367131 original size:79 final size:79
Alignment explanation
Indices: 26366928--26367132 Score: 261
Period size: 79 Copynumber: 2.6 Consensus size: 79
26366918 GGCTAATTCT
* **
26366928 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCGGGCTAAGTCCCGAAGGTGTTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
* * *
26366993 CGAGCTATTATATCC
65 CAAGCTACTATAACC
* *
26367008 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTATA-CCGGGCTAAGTCTCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTTGTG
*
26367072 CAAGTTACTATAACC
65 CAAGCTACTATAACC
* * *
26367087 GGGCTAAGTCCCGAAGGCATTTGAGCTAGTGGCTATATCC-GGCTAA
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGT-ACTATATCCGGGCTAA
26367133 ACTCCGAAGG
Statistics
Matches: 109, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
78 1 0.01
79 72 0.66
80 36 0.33
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGC
AAGCTACTATAACC
Found at i:26370667 original size:13 final size:13
Alignment explanation
Indices: 26370649--26370673 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26370639 TATGTGATAT
26370649 GTGTGAAAATTTC
1 GTGTGAAAATTTC
26370662 GTGTGAAAATTT
1 GTGTGAAAATTT
26370674 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:26371879 original size:47 final size:46
Alignment explanation
Indices: 26371822--26371995 Score: 127
Period size: 47 Copynumber: 3.7 Consensus size: 46
26371812 TTTTGAAAGG
26371822 AGTTACCTTGATTTGGCTACGAGCCATGGTATAAGTACTCCGGGAT
1 AGTTACCTTGATTTGGCTACGAGCCATGGTATAAGTACTCCGGGAT
* ** * * ** ** * *
26371868 ATGTTATCTTGATTTTTCTTCGAGCCATGAT-TAAGGTTTTTTGAGAGG
1 A-GTTACCTTGATTTGGCTACGAGCCATGGTATAA-GTACTCCGGGA-T
* * * *
26371916 AGATACCTTGATTTGGCTA-TAGACCATGGTATAGGTACTCCGGAAT
1 AGTTACCTTGATTTGGCTACGAG-CCATGGTATAAGTACTCCGGGAT
* * *
26371962 AAGTTATCTTGATTTGGCTAAGGGCCATGGTATA
1 -AGTTACCTTGATTTGGCTACGAGCCATGGTATA
26371996 GATTACTTAT
Statistics
Matches: 91, Mismatches: 30, Indels: 13
0.68 0.22 0.10
Matches are distributed among these distances:
46 6 0.07
47 81 0.89
48 4 0.04
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.36
Consensus pattern (46 bp):
AGTTACCTTGATTTGGCTACGAGCCATGGTATAAGTACTCCGGGAT
Found at i:26371955 original size:94 final size:94
Alignment explanation
Indices: 26371794--26371976 Score: 278
Period size: 94 Copynumber: 1.9 Consensus size: 94
26371784 GCCATGACTA
* * *
26371794 CGAGCCATGATTTAGGTATTTTGAAAGGAGTTACCTTGATTTGGCTACGAGCCATGGTATAAGTA
1 CGAGCCATGATTAAGGTATTTTGAAAGGAGATACCTTGATTTGGCTAAGAGCCATGGTATAAGTA
* *
26371859 CTCCGGGATATGTTATCTTGATTTTTCTT
66 CTCCGGAATAAGTTATCTTGATTTTTCTT
* * *
26371888 CGAGCCATGATTAAGGTTTTTTGAGAGGAGATACCTTGATTTGGCTATAGA-CCATGGTATAGGT
1 CGAGCCATGATTAAGGTATTTTGAAAGGAGATACCTTGATTTGGCTA-AGAGCCATGGTATAAGT
26371952 ACTCCGGAATAAGTTATCTTGATTT
65 ACTCCGGAATAAGTTATCTTGATTT
26371977 GGCTAAGGGC
Statistics
Matches: 80, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
94 78 0.98
95 2 0.03
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.37
Consensus pattern (94 bp):
CGAGCCATGATTAAGGTATTTTGAAAGGAGATACCTTGATTTGGCTAAGAGCCATGGTATAAGTA
CTCCGGAATAAGTTATCTTGATTTTTCTT
Found at i:26372281 original size:16 final size:17
Alignment explanation
Indices: 26372260--26372291 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26372250 TGAATTGCTC
26372260 AACTATGAA-CTTACTA
1 AACTATGAAGCTTACTA
26372276 AACTATGAAGCTTACT
1 AACTATGAAGCTTACT
26372292 GTGTGTTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.41, C:0.19, G:0.09, T:0.31
Consensus pattern (17 bp):
AACTATGAAGCTTACTA
Found at i:26373087 original size:25 final size:25
Alignment explanation
Indices: 26373043--26373095 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 25
26373033 TTTTCCCATA
*
26373043 GCCAAGGCAAACAGACGTGTCTCCG
1 GCCAAGGCAAACAAACGTGTCTCCG
* * *
26373068 GCCAAGGCACACAAATGTGTCTCTG
1 GCCAAGGCAAACAAACGTGTCTCCG
26373093 GCC
1 GCC
26373096 GTGTGGTGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.15
Consensus pattern (25 bp):
GCCAAGGCAAACAAACGTGTCTCCG
Found at i:26376385 original size:36 final size:36
Alignment explanation
Indices: 26376345--26376460 Score: 135
Period size: 36 Copynumber: 3.2 Consensus size: 36
26376335 CGGGTGGTTC
*
26376345 AGCTCTTATGAGCATTTGGCATGTTTCGTTTGGACT
1 AGCTCTTATGAGCATTTGGCATGTTTCGGTTGGACT
* * * *
26376381 AGCTCTTAGGAGCAATTGGCATGTTATCGGGTGG-TT
1 AGCTCTTATGAGCATTTGGCATGTT-TCGGTTGGACT
* * *
26376417 AAGCTCTTATGAGCATTTGGCGTCTTTAGGTTGGACT
1 -AGCTCTTATGAGCATTTGGCATGTTTCGGTTGGACT
26376454 AGCTCTT
1 AGCTCTT
26376461 GAAAGCAATT
Statistics
Matches: 65, Mismatches: 12, Indels: 6
0.78 0.14 0.07
Matches are distributed among these distances:
36 37 0.57
37 28 0.43
ACGTcount: A:0.18, C:0.16, G:0.28, T:0.38
Consensus pattern (36 bp):
AGCTCTTATGAGCATTTGGCATGTTTCGGTTGGACT
Found at i:26376422 original size:73 final size:73
Alignment explanation
Indices: 26376329--26376509 Score: 238
Period size: 73 Copynumber: 2.5 Consensus size: 73
26376319 TGTTTTGGTG
* * * * *
26376329 TGTTATCGGGTGGTTCAGCTCTTATGAGCATTTGGCATGTTTCGTTTGGACTAGCTCTT-AGGAG
1 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGCATCTTTAGGTTGGACTAGCTCTTGA-AAG
26376393 CAATTGGCA
65 CAATTGGCA
*
26376402 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGCGTCTTTAGGTTGGACTAGCTCTTGAAAGC
1 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGCATCTTTAGGTTGGACTAGCTCTTGAAAGC
**
26376467 AATTGGTG
66 AATTGGCA
* * * *
26376475 TGTTATCGGGTGGATGAGGTCTTATGTGCATTTGG
1 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGG
26376510 TGTGTTTTCA
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
73 94 0.99
74 1 0.01
ACGTcount: A:0.18, C:0.14, G:0.31, T:0.38
Consensus pattern (73 bp):
TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGCATCTTTAGGTTGGACTAGCTCTTGAAAGC
AATTGGCA
Found at i:26376431 original size:37 final size:36
Alignment explanation
Indices: 26376329--26376437 Score: 139
Period size: 36 Copynumber: 3.0 Consensus size: 36
26376319 TGTTTTGGTG
26376329 TGTTATCGGGTGGTTCAGCTCTTATGAGCATTTGGCA
1 TGTTATCGGGTGGTT-AGCTCTTATGAGCATTTGGCA
** * * *
26376366 TGTT-TCGTTTGGACTAGCTCTTAGGAGCAATTGGCA
1 TGTTATCGGGTGG-TTAGCTCTTATGAGCATTTGGCA
26376402 TGTTATCGGGTGGTTAAGCTCTTATGAGCATTTGGC
1 TGTTATCGGGTGGTT-AGCTCTTATGAGCATTTGGC
26376438 GTCTTTAGGT
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
36 30 0.51
37 29 0.49
ACGTcount: A:0.17, C:0.16, G:0.29, T:0.38
Consensus pattern (36 bp):
TGTTATCGGGTGGTTAGCTCTTATGAGCATTTGGCA
Found at i:26376851 original size:24 final size:24
Alignment explanation
Indices: 26376807--26376852 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
26376797 AGGTTAGATT
**
26376807 TTATTTTTATTTGTTTTGTTTTGC
1 TTATTTTTATTTGTTAAGTTTTGC
26376831 TTATTTTTATTT-TTGAAGTTTT
1 TTATTTTTATTTGTT-AAGTTTT
26376853 TATTTTTTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 2 0.11
24 17 0.89
ACGTcount: A:0.13, C:0.02, G:0.11, T:0.74
Consensus pattern (24 bp):
TTATTTTTATTTGTTAAGTTTTGC
Found at i:26381373 original size:49 final size:49
Alignment explanation
Indices: 26381320--26381428 Score: 139
Period size: 49 Copynumber: 2.2 Consensus size: 49
26381310 CCAAATAGTT
* *
26381320 CTTACACTGACTTTCATATATCGAG-GCCGATGCCATGTCTCAGACAAGC
1 CTTACACTGACTCTCATATATCG-GTGCCGATGCCATGTCCCAGACAAGC
* * * * *
26381369 CTTACACTGGCTCTCATCTATCGGTGTCGATGCCATGTCCCAGACAGGT
1 CTTACACTGACTCTCATATATCGGTGCCGATGCCATGTCCCAGACAAGC
26381418 CTTACACTGAC
1 CTTACACTGAC
26381429 ACACAACAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
48 1 0.02
49 50 0.98
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (49 bp):
CTTACACTGACTCTCATATATCGGTGCCGATGCCATGTCCCAGACAAGC
Found at i:26382958 original size:38 final size:38
Alignment explanation
Indices: 26382902--26383094 Score: 302
Period size: 38 Copynumber: 5.1 Consensus size: 38
26382892 TAACCCGGAT
26382902 ATTT-TTCCAGCACT-TAGCCTGCGGACTTTAAGTCCAG
1 ATTTATTCCAGCA-TATAGCCTGCGGACTTTAAGTCCAG
**
26382939 ATTTATTCCAGCATATAGCCTGTAGACTTTAAGTCC-G
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
26382976 AATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
1 -ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
* **
26383015 ATTTATTCCAGCATATAGCCTGTGGACTTTAAGTCTGG
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
26383053 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
26383091 ATTT
1 ATTT
26383095 CTTCTTTTAT
Statistics
Matches: 142, Mismatches: 10, Indels: 7
0.89 0.06 0.04
Matches are distributed among these distances:
37 6 0.04
38 135 0.95
39 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (38 bp):
ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAG
Found at i:26382998 original size:76 final size:76
Alignment explanation
Indices: 26382902--26383094 Score: 336
Period size: 76 Copynumber: 2.6 Consensus size: 76
26382892 TAACCCGGAT
26382902 ATTT-TTCCAGCACT-TAGCCTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTAGA
1 ATTTATTCCAGCA-TATAGCCTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTAGA
26382965 CTTTAAGTCCGA
65 CTTTAAGTCCGA
*
26382977 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTGGAC
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTAGAC
* *
26383042 TTTAAGTCTGG
66 TTTAAGTCCGA
26383053 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAGATTT
1 ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAGATTT
26383095 CTTCTTTTAT
Statistics
Matches: 113, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
75 5 0.04
76 108 0.96
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.34
Consensus pattern (76 bp):
ATTTATTCCAGCATATAGCCTGCGGACTTTAAGTCCAGATTTATTCCAGCATATAGCCTGTAGAC
TTTAAGTCCGA
Found at i:26389510 original size:38 final size:38
Alignment explanation
Indices: 26389460--26389646 Score: 277
Period size: 38 Copynumber: 4.9 Consensus size: 38
26389450 GGATATTTTA
26389460 CCAGCACT-TAGCCTGCGGACTTTAAGTCCGGATTTATT
1 CCAGCA-TATAGCCTGCGGACTTTAAGTCCGGATTTATT
*
26389498 CCAGCATATAGCCTGCGGACTTTAAGTCCAGATTTATT
1 CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTTATT
** *
26389536 CCAGCATATAGCCCACAGACTTTAAGTCCGGATTTATT
1 CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTTATT
* *
26389574 CCATCATATAGCCTACGGACTTTAAGTCCGGATTTATT
1 CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTTATT
* * *
26389612 CTAGCATATAGCCTGTGGGCTTTAAGTCCGGATTT
1 CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTT
26389647 CTTCTTTTAC
Statistics
Matches: 135, Mismatches: 13, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
37 1 0.01
38 134 0.99
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (38 bp):
CCAGCATATAGCCTGCGGACTTTAAGTCCGGATTTATT
Found at i:26394060 original size:41 final size:41
Alignment explanation
Indices: 26394015--26394183 Score: 139
Period size: 41 Copynumber: 4.1 Consensus size: 41
26394005 GCACAAACAT
* *
26394015 CCTTCGGAA-TCAAGCCCGATTCTTAGCACTGGCTCAAAAGC
1 CCTTCGGAACT-AAGCCCGATTATGAGCACTGGCTCAAAAGC
* * * * *
26394056 CCTTC-GAGACCAAGCTCAGATTA-GACCACTGGCTCGAAGGC
1 CCTTCGGA-ACTAAGC-CCGATTATGAGCACTGGCTCAAAAGC
* * * *
26394097 CCTTCGGAACTAAGTCTGGTTATGA-CACTGGCTCTAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
* ** * *
26394137 CCTTCGAAACTAAGTTCGGTTATTAGCACTGGCTCAAAAGC
1 CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
26394178 CCTTCG
1 CCTTCG
26394184 AGACCAAGCT
Statistics
Matches: 104, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
40 41 0.39
41 56 0.54
42 7 0.07
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (41 bp):
CCTTCGGAACTAAGCCCGATTATGAGCACTGGCTCAAAAGC
Found at i:26394184 original size:41 final size:40
Alignment explanation
Indices: 26394037--26394184 Score: 158
Period size: 41 Copynumber: 3.6 Consensus size: 40
26394027 AGCCCGATTC
* * *
26394037 TTAGCACTGGCTCAAAAGCCCTTCGAGACCAAGCTCAG--A
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAG-TCGGTTA
* * *
26394076 TTAGACCACTGGCTCGAAGGCCCTTCGGAACTAAGTCTGGTTA
1 TTAG--CACTGGCTCAAAAGCCCTTCGAAACTAAGTC-GGTTA
* *
26394119 TGA-CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTA
1 TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAG-TCGGTTA
26394159 TTAGCACTGGCTCAAAAGCCCTTCGA
1 TTAGCACTGGCTCAAAAGCCCTTCGA
26394185 GACCAAGCTC
Statistics
Matches: 90, Mismatches: 12, Indels: 12
0.79 0.11 0.11
Matches are distributed among these distances:
39 4 0.04
40 35 0.39
41 48 0.53
43 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCGGTTA
Found at i:26398830 original size:47 final size:48
Alignment explanation
Indices: 26398752--26399021 Score: 402
Period size: 49 Copynumber: 5.6 Consensus size: 48
26398742 CCCTTCGGGA
* * *
26398752 CTTATCAC-ATTTATACACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
26398799 CCTGTCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTCGGC
26398846 CTTATCAC-ATATATACACTTTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACAATATATACAC--TTTCACATTCATCACATTGGCCATTCGGC
26398895 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
26398944 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACA-ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
26398993 CTTATCACATATATATACACTTTCACATT
1 CTTATCACA-ATATATACACTTTCACATT
26399022 TATTCAAATA
Statistics
Matches: 207, Mismatches: 12, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
47 56 0.27
49 141 0.68
51 10 0.05
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (48 bp):
CTTATCACAATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:26406502 original size:41 final size:41
Alignment explanation
Indices: 26406457--26406624 Score: 119
Period size: 41 Copynumber: 4.1 Consensus size: 41
26406447 CCTTCGTAAT
* *
26406457 CAAGCCCGATTCTTAGCACTGGCTCAAAAGCCCTTCAAGAC
1 CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCAAGAC
** * * * *
26406498 CAAGCTTGGATTA-GACCACTGGCTCGAAGGCCCTTC-GGAAC
1 CAAGC-CCGATTATGAGCACTGGCTCAAAAGCCCTTCAAG-AC
* * * *
26406539 TAAGTCCGGTTATGA-CACTGGCTCTAAAGCCCTTCGAA-AC
1 CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTC-AAGAC
* ** * * *
26406579 TAAGTTCGGTTATTAGCACTGGCTCAAAAGCCCTTCGAGAC
1 CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCAAGAC
26406620 CAAGC
1 CAAGC
26406625 TCGGATTTAG
Statistics
Matches: 98, Mismatches: 22, Indels: 14
0.73 0.16 0.10
Matches are distributed among these distances:
40 39 0.40
41 55 0.56
42 4 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.22
Consensus pattern (41 bp):
CAAGCCCGATTATGAGCACTGGCTCAAAAGCCCTTCAAGAC
Found at i:26406571 original size:40 final size:41
Alignment explanation
Indices: 26406471--26406616 Score: 156
Period size: 41 Copynumber: 3.6 Consensus size: 41
26406461 CCCGATTCTT
* *
26406471 AGCACTGGCTCAAAAGCCCTTC-AAGACCAAG-CTTGGATTA-G
1 AGCACTGGCTCAAAAGCCCTTCGAA-ACTAAGTC-CGG-TTATG
* * * *
26406512 ACCACTGGCTCGAAGGCCCTTCGGAACTAAGTCCGGTTATG
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
* * *
26406553 A-CACTGGCTCTAAAGCCCTTCGAAACTAAGTTCGGTTATT
1 AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
26406593 AGCACTGGCTCAAAAGCCCTTCGA
1 AGCACTGGCTCAAAAGCCCTTCGA
26406617 GACCAAGCTC
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
40 38 0.43
41 49 0.55
42 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
AGCACTGGCTCAAAAGCCCTTCGAAACTAAGTCCGGTTATG
Found at i:26412123 original size:14 final size:15
Alignment explanation
Indices: 26412081--26412129 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
26412071 ACGGAGAAGC
*
26412081 CCAAAATAAAGAAAT
1 CCAAGATAAAGAAAT
26412096 CCAAGATAAAGAAAT
1 CCAAGATAAAGAAAT
* *
26412111 TCATGAT-AAGAAAAT
1 CCAAGATAAAG-AAAT
26412126 CCAA
1 CCAA
26412130 TTTACAACAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
14 3 0.11
15 25 0.89
ACGTcount: A:0.59, C:0.14, G:0.10, T:0.16
Consensus pattern (15 bp):
CCAAGATAAAGAAAT
Found at i:26422731 original size:40 final size:40
Alignment explanation
Indices: 26422414--26422717 Score: 431
Period size: 40 Copynumber: 7.7 Consensus size: 40
26422404 TTGAATGATG
* * *
26422414 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
** * *
26422453 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26422493 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26422532 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26422572 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26422612 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26422652 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
26422693 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26422718 AACGAGGAGC
Statistics
Matches: 246, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
39 53 0.22
40 183 0.74
41 10 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26433797 original size:42 final size:43
Alignment explanation
Indices: 26433716--26433837 Score: 135
Period size: 43 Copynumber: 2.8 Consensus size: 43
26433706 TCCCAAACGT
*
26433716 GGTCTTACATGT-AATCAAATATCGATGCC-ACTATCCCAGACAG
1 GGTCTTACACGTAAATCAAATAT-GATGCCAAC-ATCCCAGACAG
* *
26433759 GGTTTTACACG-AAATCAAATATGATGCCAACATCCCAGACAT
1 GGTCTTACACGTAAATCAAATATGATGCCAACATCCCAGACAG
* *
26433801 TGTCTTACACGTAAATCATAAGT-CGATGCCAACATCC
1 GGTCTTACACGTAAATCA-AA-TATGATGCCAACATCC
26433838 TAGTTGTGGT
Statistics
Matches: 68, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
42 25 0.37
43 27 0.40
44 15 0.22
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.15, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAAATATGATGCCAACATCCCAGACAG
Found at i:26436166 original size:11 final size:11
Alignment explanation
Indices: 26436150--26436175 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26436140 TGAAGCCCAC
26436150 ATCACAATAAT
1 ATCACAATAAT
26436161 ATCACAATAAT
1 ATCACAATAAT
26436172 ATCA
1 ATCA
26436176 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:26438026 original size:93 final size:93
Alignment explanation
Indices: 26437914--26438084 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
26437904 GCCCATAAGT
* *
26437914 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26437979 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
26438007 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26438072 CGAGTTCGGATGC
66 CGAGTTCGGATGC
26438085 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:26438081 original size:46 final size:46
Alignment explanation
Indices: 26437906--26438081 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
26437896 TGTAACCCGC
* * *
26437906 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
26437952 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
26438002 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
26438045 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
26438082 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:26440497 original size:15 final size:15
Alignment explanation
Indices: 26440477--26440554 Score: 54
Period size: 15 Copynumber: 5.2 Consensus size: 15
26440467 AGAAAACCGA
26440477 ATAGAGAAATCCAAG
1 ATAGAGAAATCCAAG
*
26440492 ATAGAGAAA-CCCAG
1 ATAGAGAAATCCAAG
*
26440506 AATAAAGAAATCC-AG
1 -ATAGAGAAATCCAAG
* *
26440521 A-ATGAAGAGATCCAGG
1 ATA-G-AGAAATCCAAG
* *
26440537 ATAAAGAAACCCAAG
1 ATAGAGAAATCCAAG
26440552 ATA
1 ATA
26440555 CGATACTATG
Statistics
Matches: 48, Mismatches: 9, Indels: 12
0.70 0.13 0.17
Matches are distributed among these distances:
13 1 0.02
14 5 0.10
15 37 0.77
16 4 0.08
17 1 0.02
ACGTcount: A:0.54, C:0.15, G:0.19, T:0.12
Consensus pattern (15 bp):
ATAGAGAAATCCAAG
Found at i:26440515 original size:30 final size:31
Alignment explanation
Indices: 26440458--26440554 Score: 94
Period size: 30 Copynumber: 3.2 Consensus size: 31
26440448 TTATGGAACA
*
26440458 AAGATAAGAAGAAAACC-GAATAGAGAAATCC
1 AAGAT-AGAAGAAAACCAGAATAAAGAAATCC
*
26440489 AAGATAG-AGAAACCCAGAATAAAGAAATCC
1 AAGATAGAAGAAAACCAGAATAAAGAAATCC
* * * *
26440519 -AGA-ATGAAGAGATCCAGGATAAAGAAACCC
1 AAGATA-GAAGAAAACCAGAATAAAGAAATCC
26440549 AAGATA
1 AAGATA
26440555 CGATACTATG
Statistics
Matches: 55, Mismatches: 6, Indels: 9
0.79 0.09 0.13
Matches are distributed among these distances:
28 1 0.02
29 11 0.20
30 34 0.62
31 8 0.15
32 1 0.02
ACGTcount: A:0.56, C:0.14, G:0.20, T:0.10
Consensus pattern (31 bp):
AAGATAGAAGAAAACCAGAATAAAGAAATCC
Found at i:26447054 original size:27 final size:27
Alignment explanation
Indices: 26447016--26447067 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
26447006 AAGGGCAAAA
* *
26447016 CAGTCATTTTACCCTACAGGGGTATGT
1 CAGTCATTTTACACTACAAGGGTATGT
26447043 CAGTCATTTTACACTACAAGGGTAT
1 CAGTCATTTTACACTACAAGGGTAT
26447068 TTCGATAGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (27 bp):
CAGTCATTTTACACTACAAGGGTATGT
Found at i:26447133 original size:16 final size:15
Alignment explanation
Indices: 26447113--26447180 Score: 82
Period size: 16 Copynumber: 4.3 Consensus size: 15
26447103 GGGAGGAATG
26447113 GAATAGAGCTGTAAT
1 GAATAGAGCTGTAAT
*
26447128 GTAATAGAGTTGTAAT
1 G-AATAGAGCTGTAAT
*
26447144 GGAATAGAGCTATAAT
1 -GAATAGAGCTGTAAT
*
26447160 AGAATAGACCTGTAAT
1 -GAATAGAGCTGTAAT
26447176 GAATA
1 GAATA
26447181 ATTCAGTTGT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
15 6 0.13
16 38 0.84
17 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.28
Consensus pattern (15 bp):
GAATAGAGCTGTAAT
Found at i:26447150 original size:32 final size:32
Alignment explanation
Indices: 26447109--26447180 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
26447099 GGTTGGGAGG
* **
26447109 AATGGAATAGAGCTGTAAT-GTAATAGAGTTGT
1 AATGGAATAGAGCTATAATAG-AATAGACCTGT
26447141 AATGGAATAGAGCTATAATAGAATAGACCTGT
1 AATGGAATAGAGCTATAATAGAATAGACCTGT
26447173 AAT-GAATA
1 AATGGAATA
26447181 ATTCAGTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
31 5 0.14
32 30 0.83
33 1 0.03
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.28
Consensus pattern (32 bp):
AATGGAATAGAGCTATAATAGAATAGACCTGT
Found at i:26447370 original size:26 final size:26
Alignment explanation
Indices: 26447334--26447388 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
26447324 TTATTATTTT
* * * *
26447334 TAAATTTTAATAAAATTATTATTAAA
1 TAAAATTTAATAAAAATAATAATAAA
26447360 TAAAATTTAATAAAAATAATAATAAA
1 TAAAATTTAATAAAAATAATAATAAA
26447386 TAA
1 TAA
26447389 TAAATAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
TAAAATTTAATAAAAATAATAATAAA
Found at i:26447396 original size:26 final size:26
Alignment explanation
Indices: 26447341--26447396 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
26447331 TTTTAAATTT
* * * *
26447341 TAATAAAATTATTATTAAATAAAATT
1 TAATAAAAATAATAATAAATAAAATA
26447367 TAATAAAAATAATAATAAATAATAA-A
1 TAATAAAAATAATAATAAATAA-AATA
26447393 TAAT
1 TAAT
26447397 TTAATCATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (26 bp):
TAATAAAAATAATAATAAATAAAATA
Found at i:26450934 original size:27 final size:27
Alignment explanation
Indices: 26450912--26451160 Score: 253
Period size: 27 Copynumber: 9.4 Consensus size: 27
26450902 TAAGGGCATA
26450912 TCGATAATTTTACAAATCGAGGGTATT
1 TCGATAATTTTACAAATCGAGGGTATT
* * *
26450939 TCGATAATTTTACAAATCAAGTGTGTT
1 TCGATAATTTTACAAATCGAGGGTATT
* * *
26450966 TCGATACTTTTACAAATTGAGGGTGTT
1 TCGATAATTTTACAAATCGAGGGTATT
* * *
26450993 TCGGTAATTTTACAAATTGAGGGTGTT
1 TCGATAATTTTACAAATCGAGGGTATT
*
26451020 TC-AGTAATTTCACAAATCG-GAGGTATT
1 TCGA-TAATTTTACAAATCGAG-GGTATT
*
26451047 TCGATAATTTTACAAATTGAGGGTATT
1 TCGATAATTTTACAAATCGAGGGTATT
* * *
26451074 TCAATAATATCAC-AATCGAGGGTATT
1 TCGATAATTTTACAAATCGAGGGTATT
* *
26451100 TCGGT-A--TTACAAATC-AGGGGTACT
1 TCGATAATTTTACAAATCGA-GGGTATT
*
26451124 TCGATAATTTTACAATTCG-GGGTTATT
1 TCGATAATTTTACAAATCGAGGG-TATT
26451151 TCGATAATTT
1 TCGATAATTT
26451161 CTCTTTATTA
Statistics
Matches: 185, Mismatches: 26, Indels: 22
0.79 0.11 0.09
Matches are distributed among these distances:
23 4 0.02
24 14 0.08
25 2 0.01
26 19 0.10
27 144 0.78
28 2 0.01
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.38
Consensus pattern (27 bp):
TCGATAATTTTACAAATCGAGGGTATT
Found at i:26451513 original size:28 final size:28
Alignment explanation
Indices: 26451477--26451541 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
26451467 TTGCCCCTTT
* *
26451477 AGGCCCAATCTCGTTCACATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
* *
26451505 GGGCCCAATCACATTCATATGGCCCATC
1 AGGCCCAATCACATTCACATGGCCCATC
*
26451533 AAGCCCAAT
1 AGGCCCAAT
26451542 TACTTCTAAC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.26, C:0.37, G:0.17, T:0.20
Consensus pattern (28 bp):
AGGCCCAATCACATTCACATGGCCCATC
Found at i:26454410 original size:27 final size:27
Alignment explanation
Indices: 26454353--26454495 Score: 112
Period size: 27 Copynumber: 5.3 Consensus size: 27
26454343 AAAAACAATC
* * * *
26454353 ATTTTACCCTACAGGGGTATGTC-AGTC
1 ATTTTACACTACAAGGGTATTTCGA-TA
*
26454380 ATTTTACACTACAAGGGTATTTTGATA
1 ATTTTACACTACAAGGGTATTTCGATA
* *
26454407 ATTTTACACTATAAGGGTATATCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
* * *
26454434 ATTTTACA-AATCAAAGGTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTCGATA
* * * *
26454461 ATTTTACA-AATCAAGAGTGTTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTCGATA
26454488 ATTTTACA
1 ATTTTACA
26454496 AATCGAGAAT
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 1 0.01
27 96 0.98
28 1 0.01
ACGTcount: A:0.33, C:0.13, G:0.16, T:0.38
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:26454496 original size:27 final size:27
Alignment explanation
Indices: 26454391--26454714 Score: 294
Period size: 27 Copynumber: 12.0 Consensus size: 27
26454381 TTTTACACTA
* * *
26454391 CAAGGGTATTTTGATAATTTTACACTAT
1 CAAGGGTATTTCGGTAATTTTACA-AAT
* *
26454419 -AAGGGTATATCGATAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
*
26454445 CAAAGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
26454472 CAAGAGTGTTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* **
26454499 CGAGAATATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * * *
26454526 CGAGGGTGTTTCGGTAATTTCATAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * * *
26454553 TAGGGGTATTTAGATAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * * *
26454580 CGAGTGTATTTCAGTAATTTCAC-AAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
26454606 CGAGGGTATTTCAGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* * * *
26454633 TAGGGGTATTTCGATAATTTTATAAAT
1 CAAGGGTATTTCGGTAATTTTACAAAT
* *
26454660 TAGGGGTATTTCGGTAATTTTACAAA-
1 CAAGGGTATTTCGGTAATTTTACAAAT
** * *
26454686 CTGGGGGTACTTCAGTAATTTTACAAAT
1 C-AAGGGTATTTCGGTAATTTTACAAAT
26454714 C
1 C
26454715 GGGATTATTT
Statistics
Matches: 245, Mismatches: 47, Indels: 8
0.82 0.16 0.03
Matches are distributed among these distances:
26 26 0.11
27 218 0.89
28 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTACAAAT
Found at i:26454571 original size:81 final size:81
Alignment explanation
Indices: 26454394--26454733 Score: 339
Period size: 81 Copynumber: 4.2 Consensus size: 81
26454384 TACACTACAA
* * * * * * * *
26454394 GGGTATTTTGATAATTTTACACTAT-AAGGGTATATCGATAATTTTACAAATCAAAGGTATTTCG
1 GGGTATTTCGATAATTTTACA-AATCGAGAGTATTTCGGTAATTTTACAAATCGAGGGTATTTCG
* *
26454458 GTAATTTTACAAATCAA
65 GTAATTTTACAAATTAG
* * * * *
26454475 GAGTGTTTCGGTAATTTTACAAATCGAGAATATTTCGGTAATTTTACAAATCGAGGGTGTTTCGG
1 GGGTATTTCGATAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
* *
26454540 TAATTTCATAAATTAG
66 TAATTTTACAAATTAG
* * * * *
26454556 GGGTATTTAGATAATTTTACAAATCGAGTGTATTTCAGTAATTTCAC-AATCGAGGGTATTTCAG
1 GGGTATTTCGATAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
26454620 TAATTTTACAAATTAG
66 TAATTTTACAAATTAG
* * * * *
26454636 GGGTATTTCGATAATTTTATAAAT-TAGGGGTATTTCGGTAATTTTACAAA-CTGGGGGTACTTC
1 GGGTATTTCGATAATTTTACAAATCGA-GAGTATTTCGGTAATTTTACAAATC-GAGGGTATTTC
* *
26454699 AGTAATTTTACAAA-TCG
64 GGTAATTTTACAAATTAG
*
26454716 GGATTATTTCGATAATTT
1 GG-GTATTTCGATAATTT
26454734 ATCTTTATTA
Statistics
Matches: 215, Mismatches: 39, Indels: 10
0.81 0.15 0.04
Matches are distributed among these distances:
79 1 0.00
80 75 0.35
81 139 0.65
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACAAATCGAGAGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGG
TAATTTTACAAATTAG
Found at i:26457733 original size:7 final size:7
Alignment explanation
Indices: 26457721--26457763 Score: 86
Period size: 7 Copynumber: 6.1 Consensus size: 7
26457711 TTAGGTCCTT
26457721 TTTTACA
1 TTTTACA
26457728 TTTTACA
1 TTTTACA
26457735 TTTTACA
1 TTTTACA
26457742 TTTTACA
1 TTTTACA
26457749 TTTTACA
1 TTTTACA
26457756 TTTTACA
1 TTTTACA
26457763 T
1 T
26457764 ACGAAGGATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.58
Consensus pattern (7 bp):
TTTTACA
Found at i:26463291 original size:24 final size:24
Alignment explanation
Indices: 26463259--26463307 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
26463249 AAATCATGCC
26463259 TAAGTTATTTTTGCAATATAATTT
1 TAAGTTATTTTTGCAATATAATTT
26463283 TAAGTTATTTTTGCAATATAATTT
1 TAAGTTATTTTTGCAATATAATTT
26463307 T
1 T
26463308 TAAATAACTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (24 bp):
TAAGTTATTTTTGCAATATAATTT
Found at i:26463803 original size:25 final size:25
Alignment explanation
Indices: 26463769--26463820 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
26463759 ATTTACTTAG
26463769 TTTTTAAATAGTTTTTGACCATCTT
1 TTTTTAAATAGTTTTTGACCATCTT
26463794 TTTTTAAATAGTTTTTGACCATCTT
1 TTTTTAAATAGTTTTTGACCATCTT
26463819 TT
1 TT
26463821 AAAACCAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.58
Consensus pattern (25 bp):
TTTTTAAATAGTTTTTGACCATCTT
Found at i:26476972 original size:42 final size:42
Alignment explanation
Indices: 26476913--26477043 Score: 124
Period size: 42 Copynumber: 3.1 Consensus size: 42
26476903 AATGCGAACA
*
26476913 TCCCAGACGTGATCTTACATGTAATCAAATTCGATGAC-ACTG
1 TCCCAGACGTGGTCTTACATGTAATCAAATTCGATGACAAC-G
*** *
26476955 TCCCAGACAG-GGTCTTACACAAAATCAAATAT-GATGCCAACG
1 TCCCAGAC-GTGGTCTTACATGTAATCAAAT-TCGATGACAACG
* * *
26476997 TCTCAGACGTGGTCTTACATGTAAATCATAAGTCGATGCCAACG
1 TCCCAGACGTGGTCTTACATGT-AATCA-AATTCGATGACAACG
26477041 TCC
1 TCC
26477044 TAGATGTGAT
Statistics
Matches: 71, Mismatches: 11, Indels: 12
0.76 0.12 0.13
Matches are distributed among these distances:
41 1 0.01
42 46 0.65
43 10 0.14
44 14 0.20
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (42 bp):
TCCCAGACGTGGTCTTACATGTAATCAAATTCGATGACAACG
Found at i:26481591 original size:19 final size:20
Alignment explanation
Indices: 26481563--26481603 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26481553 TACGATCTCT
*
26481563 AAAATCTATA-AAACAAAGA
1 AAAATATATACAAACAAAGA
*
26481582 AAAATATATACACACAAAGA
1 AAAATATATACAAACAAAGA
26481602 AA
1 AA
26481604 GCTAACTTAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.68, C:0.12, G:0.05, T:0.15
Consensus pattern (20 bp):
AAAATATATACAAACAAAGA
Found at i:26483646 original size:54 final size:54
Alignment explanation
Indices: 26483581--26483974 Score: 601
Period size: 54 Copynumber: 7.3 Consensus size: 54
26483571 TTAGTTTACC
* * *
26483581 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
26483635 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
*
26483689 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* *
26483743 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * * *
26483797 AAATTACTAAAA-ACCCCTGGTTTATAAAATCACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * * *
26483850 AAATCACCAAAATACCCCTGGTTAGTAAAATTACCAAAATGCCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
* * *
26483904 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
26483958 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
26483975 TTGTAGGGTA
Statistics
Matches: 305, Mismatches: 34, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
53 46 0.15
54 259 0.85
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTATA
Found at i:26483975 original size:27 final size:27
Alignment explanation
Indices: 26483581--26483977 Score: 517
Period size: 27 Copynumber: 14.7 Consensus size: 27
26483571 TTAGTTTACC
*
26483581 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
26483608 AAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
26483635 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
**
26483662 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
26483689 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
26483716 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
26483743 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
26483770 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
26483797 AAATTACTAAAA-ACCCCTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * * *
26483823 AAATCACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCTTGGTTTGTA
* * *
26483850 AAATCACCAAAATACCCCTGGTTAGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* **
26483877 AAATTACCAAAATGCCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTGTA
*
26483904 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTGTA
* *
26483931 AAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATACCCTTGGTTTGTA
26483958 AAATTACCAAAATACCCTTG
1 AAATTACCAAAATACCCTTG
26483978 TAGGGTAGAA
Statistics
Matches: 318, Mismatches: 51, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
26 22 0.07
27 296 0.93
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTGTA
Found at i:26483989 original size:27 final size:27
Alignment explanation
Indices: 26483905--26484370 Score: 481
Period size: 27 Copynumber: 17.3 Consensus size: 27
26483895 TGGTTTACAA
** *
26483905 AATTACCAAAATACCCCTGGT-TTGTAA
1 AATTACCAAAATACCCCT-GTAGGGTAG
* **
26483932 AATTACCAAAATACCCTTG-ATTTGT-G
1 AATTACCAAAATACCCCTGTA-GGGTAG
*
26483958 AAATTACCAAAATACCCTTGTAGGGTAG
1 -AATTACCAAAATACCCCTGTAGGGTAG
* * *
26483986 AATTACTAAAATACCCCTATATGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
**
26484013 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* ** * * *
26484040 AATTATCGCAATACCCTTATAGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
*
26484067 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
26484094 AATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
26484121 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** *
26484148 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
26484175 AATTATCACAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
26484202 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** *
26484229 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
26484256 AATTATCACAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
26484283 AATTACCGAAATACCCCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
26484310 AATTACTAAAATACCTCTGTAGGGTGG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
26484337 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
26484363 AATTACCA
1 AATTACCA
26484371 TTTTGCCCCT
Statistics
Matches: 372, Mismatches: 62, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
26 16 0.04
27 354 0.95
28 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.27
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:26483990 original size:54 final size:54
Alignment explanation
Indices: 26483581--26484324 Score: 384
Period size: 54 Copynumber: 13.8 Consensus size: 54
26483571 TTAGTTTACC
* ** * * * * *
26483581 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCATTTGTTTATA
1 AAATTACCAAAATA-CCCTTGTAGGGTAGAATTACCAAAATACCCTTGGTTTGTA
* * ** * **
26483635 AAATCACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATA-CCCTTGTAGGGTAGAATTACCAAAATACCCTTGGTTTGTA
* ** * * *
26483689 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATA-CCCTTGTAGGGTAGAATTACCAAAATACCCTTGGTTTGTA
* * ** *
26483743 AAATCACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATA-CCCTTGTAGGGTAGAATTACCAAAATACCCTTGGTTTGTA
* * *** * * * * *
26483797 AAATTACTAAAA-ACCCCTGGT-TTATAAAATCACTAGAATACCCTTGGTTTATA
1 AAATTACCAAAATA-CCCTTGTAGGGTAGAATTACCAAAATACCCTTGGTTTGTA
* * * * **
26483850 AAATCACCAAAATACCCCTGGTTA--GTAAAATTACCAAAATGCCCTTGGTTTACA
1 AAATTACCAAAATA-CCCTTG-TAGGGTAGAATTACCAAAATACCCTTGGTTTGTA
* ** * * *
26483904 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCTTGATTTGTG
1 AAATTACCAAAATA-CCCTTGTAGGGTAGAATTACCAAAATACCCTTGGTTTGTA
* * * *
26483958 AAATTACCAAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCT-ATATGGTA
1 AAATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGGT-TTGTA
* ** * * ** * **
26484012 GAATTACTGAAATACCCCTGTAGGGTAGAATTATCGCAATACCCTT-ATAGGGTA
1 AAATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGGT-TTGTA
* * * * **
26484066 AAATTACCAGAATACCCCTGTAGGGTAGAATTACCAGAATACCCCT-GTAGGGTA
1 AAATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGGT-TTGTA
* * * ** * **
26484120 GAATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCT-GTAAGGTA
1 AAATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGGT-TTGTA
* * * * * **
26484174 GAATTATCACAATACCCTTGTAGGGTAGAATTACCGAAATACCCCT-GTAGGGTA
1 AAATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGGT-TTGTA
* ** * * * * **
26484228 GAATTACTGAAATACCCCTGTAAGGTAGAATTATCACAATACCCTT-GTAGGGTA
1 AAATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGGT-TTGTA
* * * * *
26484282 GAATTACCGAAATACCCCTGTAGGGTGGAATTACTAAAATACC
1 AAATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAATACC
26484325 TCTGTAGGGT
Statistics
Matches: 595, Mismatches: 88, Indels: 14
0.85 0.13 0.02
Matches are distributed among these distances:
53 55 0.09
54 539 0.91
55 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.28
Consensus pattern (54 bp):
AAATTACCAAAATACCCTTGTAGGGTAGAATTACCAAAATACCCTTGGTTTGTA
Found at i:26483990 original size:81 final size:80
Alignment explanation
Indices: 26483581--26484324 Score: 420
Period size: 81 Copynumber: 9.2 Consensus size: 80
26483571 TTAGTTTACC
* * * *
26483581 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCATTTGTTTA-TAAAATCACCAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACC-CTTG-TTAGTGAAATTACCAA
* **
26483645 AATACCCCTGGT-TTGTA
64 AATA-CCCTTGTAGGGTA
* ** * * * *
26483662 AAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTTGTTAGTGAAATTACCAAA
***
26483727 ATACCCTTGGT-TTATA
65 ATACCCTT-GTAGGGTA
* * * *
26483743 AAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTT-GTTAGTGAAATTACCAAA
* ***
26483808 A-ACCCCTGGT-TTATA
65 ATA-CCCTTGTAGGGTA
* * * * * * * *
26483823 AAATCACTAGAATACCCTTGGTTTATAAAATCACCAAAATACCCCTGGTTAGTAAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATA-CCCTTGTTAGTGAAATTACCAAA
* **
26483888 ATGCCCTTG--GTTTACA
65 ATACCCTTGTAGGGT--A
*
26483904 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGATTTGTGAAATTACCAAA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTG-TTAGTGAAATTACCAAA
26483969 ATACCCTTGTAGGGTA
65 ATACCCTTGTAGGGTA
* * * * * ** * * * *
26483985 GAATTACTAAAATACCCCT-ATATGGTAGAATTACTGAAATACCCCTG-TAGGGTAGAATTATCG
1 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCTTGTTAGTG-A-AATTACCA
* *
26484048 CAATACCCTTATAGGGTA
63 AAATACCCTTGTAGGGTA
* ** * * * * *
26484066 AAATTACCAGAATACCCCT-GTAGGGTAGAATTACCAGAATACCCCTG-TAGGGTAGAATTACCG
1 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCTTGTTAGTG-A-AATTACCA
*
26484129 AAATACCCCTGTAGGGTA
63 AAATACCCTTGTAGGGTA
* ** ** * * * * *
26484147 GAATTACTGAAATACCCCT-GTAAGGTAGAATTATCACAATACCCTTG-TAGGGTAGAATTACCG
1 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCTTGTTAGTG-A-AATTACCA
*
26484210 AAATACCCCTGTAGGGTA
63 AAATACCCTTGTAGGGTA
* ** ** * * * * *
26484228 GAATTACTGAAATACCCCT-GTAAGGTAGAATTATCACAATACCCTTG-TAGGGTAGAATTACCG
1 AAATTACCAAAATACCCCTGGT-TTGTAAAATTACCAAAATACCCTTGTTAGTG-A-AATTACCA
* *
26484291 AAATACCCCTGTAGGGTG
63 AAATACCCTTGTAGGGTA
* *
26484309 GAATTACTAAAATACC
1 AAATTACCAAAATACC
26484325 TCTGTAGGGT
Statistics
Matches: 571, Mismatches: 77, Indels: 30
0.84 0.11 0.04
Matches are distributed among these distances:
79 5 0.01
80 83 0.15
81 479 0.84
82 2 0.00
83 2 0.00
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.28
Consensus pattern (80 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCCTTGTTAGTGAAATTACCAAAA
TACCCTTGTAGGGTA
Found at i:26484330 original size:81 final size:81
Alignment explanation
Indices: 26483959--26484341 Score: 543
Period size: 81 Copynumber: 4.7 Consensus size: 81
26483949 TGATTTGTGA
* * * * *
26483959 AATTACCAAAATACCCTTGTAGGGTAGAATTACTAAAATACCCCTATATGGTAGAATTACTGA-A
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTA-TCACA
26484023 ATACCCCTGTAGGGTAG
65 ATACCCCTGTAGGGTAG
* * * * * * * * * *
26484040 AATTATCGCAATACCCTTATAGGGTAAAATTACCAGAATACCCCTGTAGGGTAGAATTACCAGAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTATCACAA
26484105 TACCCCTGTAGGGTAG
66 TACCCCTGTAGGGTAG
*
26484121 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTATCACAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTATCACAA
*
26484186 TACCCTTGTAGGGTAG
66 TACCCCTGTAGGGTAG
*
26484202 AATTACCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAAGGTAGAATTATCACAA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTATCACAA
*
26484267 TACCCTTGTAGGGTAG
66 TACCCCTGTAGGGTAG
* * * *
26484283 AATTACCGAAATACCCCTGTAGGGTGGAATTACTAAAATACCTCTGTAGGGTGGAATTA
1 AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTA
26484342 CCGAGATACC
Statistics
Matches: 273, Mismatches: 28, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
80 1 0.00
81 272 1.00
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (81 bp):
AATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGTAAGGTAGAATTATCACAA
TACCCCTGTAGGGTAG
Found at i:26484840 original size:22 final size:22
Alignment explanation
Indices: 26484795--26484858 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
26484785 GCTAAAGCCT
* * **
26484795 CCTGATTATGGCTTTGTGTTAA
1 CCTGAATATGGCTATGTGCCAA
26484817 CCT-ACATATGGCTATGTGCCAA
1 CCTGA-ATATGGCTATGTGCCAA
* *
26484839 CCTGATTATGGCTGTGTGCC
1 CCTGAATATGGCTATGTGCC
26484859 GAACGTATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (22 bp):
CCTGAATATGGCTATGTGCCAA
Found at i:26484921 original size:6 final size:6
Alignment explanation
Indices: 26484910--26484969 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
26484900 GACGACTATA
* * *
26484910 CTGATT CTGATT CTGATT CTG-TCAC CTAATT CTGATT CTGATT TTGATT
1 CTGATT CTGATT CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT
26484959 CT-AGTT CTGAT
1 CTGA-TT CTGAT
26484970 AATGTTTCTT
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
5 2 0.05
6 37 0.86
7 3 0.07
8 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.48
Consensus pattern (6 bp):
CTGATT
Found at i:26487004 original size:54 final size:53
Alignment explanation
Indices: 26486916--26487389 Score: 597
Period size: 54 Copynumber: 8.8 Consensus size: 53
26486906 CTTTAAATAG
* * *
26486916 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAAA-TACCAAAATACCCCTAGTTTGTAAA
* *
26486970 ATTACTAGAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAAAT-ACCAAAATACCCCTAGTTTGTAAA
* * *
26487024 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAAA-TACCAAAATACCCCTAGTTTGTAAA
* *
26487078 ATTACTAGAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAAAT-ACCAAAATACCCCTAGTTTGTAAA
* * *
26487132 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAAA-TACCAAAATACCCCTAGTTTGTAAA
* *
26487186 ATTACTAGAATACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAAAT-ACCAAAATACCCCTAGTTTGTAAA
* * ** *
26487240 ATTACCAAAATACCCCTGGTTTGTAAAATTATTAAAATACTCCTAGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAAA-TACCAAAATACCCCTAGTTTGTAAA
* ** * * *
26487294 ATTACTAAAATACCCTTTATTTATAAAATTACCAAAATATCCCTGGTTGGTAAA
1 ATTACCAAAATACCCTTGGTTTATAAAA-TACCAAAATACCCCTAGTTTGTAAA
* * * *
26487348 ATTACCAAAATACCCTTGATTTGTGAAATTACTAAAATACCC
1 ATTACCAAAATACCCTTGGTTTAT-AAAATACCAAAATACCC
26487390 TTGTAGGGTA
Statistics
Matches: 364, Mismatches: 49, Indels: 14
0.85 0.11 0.03
Matches are distributed among these distances:
53 3 0.01
54 355 0.98
55 6 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (53 bp):
ATTACCAAAATACCCTTGGTTTATAAAATACCAAAATACCCCTAGTTTGTAAA
Done.