Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 83 of 322
Found at i:26487387 original size:108 final size:108
Alignment explanation
Indices: 26486916--26487361 Score: 748
Period size: 108 Copynumber: 4.1 Consensus size: 108
26486906 CTTTAAATAG
26486916 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAAATTACTAGAAT
1 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAAATTACTAGAAT
26486981 ACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
66 ACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
26487024 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAAATTACTAGAAT
1 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAAATTACTAGAAT
26487089 ACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
66 ACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
26487132 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAAATTACTAGAAT
1 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAAATTACTAGAAT
26487197 ACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
66 ACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
** ** * ** * * *
26487240 ATTACCAAAATACCCCTGGTTTGTAAAATTATTAAAATACTCCTAGTTTGTAAAATTACTAAAAT
1 ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAAATTACTAGAAT
** * * * *
26487305 ACCCTTTATTTATAAAATTACCAAAATATCCCTGGTTGGTAAA
66 ACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
26487348 ATTACCAAAATACC
1 ATTACCAAAATACC
26487362 CTTGATTTGT
Statistics
Matches: 322, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
108 322 1.00
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.31
Consensus pattern (108 bp):
ATTACCAAAATACCTTTGGTTTACAAAAGTACCAAAATACCCCTGGTTTGTAAAATTACTAGAAT
ACCCTTGGTTTATAAAATCACCAAAATACCCCTAGTTTGTAAA
Found at i:26487390 original size:27 final size:27
Alignment explanation
Indices: 26486916--26487392 Score: 517
Period size: 27 Copynumber: 17.7 Consensus size: 27
26486906 CTTTAAATAG
* **
26486916 ATTACCAAAATACCTTTGGTTTACAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* *
26486943 AGTACCAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* * *
26486970 ATTACTAGAATACCCTTGGTTTATAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* * *
26486997 ATCACCAAAATACCCCTAGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* **
26487024 ATTACCAAAATACCTTTGGTTTACAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* *
26487051 AGTACCAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* * *
26487078 ATTACTAGAATACCCTTGGTTTATAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* * *
26487105 ATCACCAAAATACCCCTAGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* **
26487132 ATTACCAAAATACCTTTGGTTTACAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* *
26487159 AGTACCAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* * *
26487186 ATTACTAGAATACCCTTGGTTTATAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
* * *
26487213 ATCACCAAAATACCCCTAGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
*
26487240 ATTACCAAAATACCCCTGGTTTGTAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
** *
26487267 ATTATTAAAATACTCC-TAGTTTGTAAA
1 ATTACCAAAATAC-CCTTGGTTTGTAAA
* ** *
26487294 ATTACTAAAATACCCTTTATTTATAAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
*
26487321 ATTACCAAAATATCCC-TGGTTGGTAAA
1 ATTACCAAAATA-CCCTTGGTTTGTAAA
* *
26487348 ATTACCAAAATACCCTTGATTTGTGAA
1 ATTACCAAAATACCCTTGGTTTGTAAA
*
26487375 ATTACTAAAATACCCTTG
1 ATTACCAAAATACCCTTG
26487393 TAGGGTAGAA
Statistics
Matches: 368, Mismatches: 78, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
26 5 0.01
27 358 0.97
28 5 0.01
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
ATTACCAAAATACCCTTGGTTTGTAAA
Found at i:26487404 original size:27 final size:27
Alignment explanation
Indices: 26487374--26487702 Score: 366
Period size: 27 Copynumber: 12.2 Consensus size: 27
26487364 TGATTTGTGA
* *
26487374 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
26487401 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
26487428 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
26487455 AATTA-TCGCAATACCCCTGTAGGGTAA
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
26487482 AATTAC-CAGAATACCCCTGTAGGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
* * *
26487509 AATTAC-CAGAATATCTCTGTAGGGTAG
1 AATTACTGA-AATACCCCTGTAGGGTAG
* *
26487536 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
26487563 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
26487590 AATTA-TCGCAATACCCCTGTAAGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
*
26487617 AATTA-TCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
26487644 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
26487671 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
26487697 AATTAC
1 AATTAC
26487703 CATTTTGCCC
Statistics
Matches: 266, Mismatches: 30, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
26 17 0.06
27 247 0.93
28 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:26487405 original size:54 final size:53
Alignment explanation
Indices: 26487239--26487677 Score: 229
Period size: 54 Copynumber: 8.1 Consensus size: 53
26487229 TAGTTTGTAA
* * ** *
26487239 AATTACCAAAATACCCCTGGTTTGTAAAATTATTAAAATACTCCTAGT-TTGTAA
1 AATTACCAAAATACCCCT-GTTTGTAAAATTACTAAAATAC-CCTTGTAGGGTAG
* * * * * * * *
26487293 AATTACTAAAATACCCTTTATTTATAAAATTACCAAAATATCCCTGGT-TGGTAA
1 AATTACCAAAATACCC-CTGTTTGTAAAATTACTAAAATA-CCCTTGTAGGGTAG
* *
26487347 AATTACCAAAATACCCTTGATTTGTGAAATTACTAAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTG-TTTGTAAAATTACTAAAATACCCTTGTAGGGTAG
** ** * * *
26487401 AATTACTGAAATACCCCTGTAGGGTAGAATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGT-TTGTAAAATTACT-AAAATACCCTTGTAGGGTAG
* ** ** * * *
26487455 AATTATCGCAATACCCCTGTAGGGTAAAATTACCAGAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGT-TTGTAAAATTACTAAAATACCCTTGTAGGGTAG
* * * ** * ** * *
26487509 AATTACCAGAATATCTCTGTAGGGTAGAATTACCGAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGT-TTGTAAAATTACTAAAATACCCTTGTAGGGTAG
** ** * ** * *
26487563 AATTACTGAAATACCCCTGTAAGGTAGAATTA-TCGCAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGT-TTGTAAAATTACT-AAAATACCCTTGTAGGGTAG
* * * ** * * *
26487617 AATTATCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTGG
1 AATTACCAAAATACCCCTGT-TTGTAAAATTACTAAAATACCCTTGTAGGGTAG
26487671 AATTACC
1 AATTACC
26487678 GAGATACCTT
Statistics
Matches: 316, Mismatches: 60, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
53 10 0.03
54 303 0.96
55 3 0.01
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (53 bp):
AATTACCAAAATACCCCTGTTTGTAAAATTACTAAAATACCCTTGTAGGGTAG
Found at i:26487432 original size:81 final size:82
Alignment explanation
Indices: 26487320--26487702 Score: 347
Period size: 81 Copynumber: 4.7 Consensus size: 82
26487310 TTATTTATAA
* * * * * * *
26487320 AATTACCAAAATATCCCTGGT-TGGTAAAATTACCAAAATACCCTTGATTTGTG-A-AATTACTA
1 AATTACTAAAATACCCCT-GTAGGGTAGAATTACCAAAATACCCTTG-TTAGGGTAGAATTACTG
* *
26487382 AAATACCCTTGTAGGGTAG
64 AAATACCCCTATAGGGTAG
* * * * *
26487401 AATTACTGAAATACCCCTGTAGGGTAGAATTATCGAAATACCCCTG-TAGGGTAGAATTA-TCGC
1 AATTACTAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTTAGGGTAGAATTACT-GA
* *
26487464 AATACCCCTGTAGGGTAA
65 AATACCCCTATAGGGTAG
* * * * *
26487482 AATTACCAGAATACCCCTGTAGGGTAGAATTACCAGAATA-TCTCTG-TAGGGTAGAATTACCGA
1 AATTACTAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCT-TGTTAGGGTAGAATTACTGA
26487545 AATACCCCTATAGGGTAG
65 AATACCCCTATAGGGTAG
* * * ** * *
26487563 AATTACTGAAATACCCCTGTAAGGTAGAATTATCGCAATACCCCTG-TAAGGTAGAATTA-TCGA
1 AATTACTAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTTAGGGTAGAATTACT-GA
26487626 AATACCCCTATAGGGTAG
65 AATACCCCTATAGGGTAG
* * * * *
26487644 AATTACTAAAATACCCCTGTAGGGTGGAATTACCGAGATA-CCTTG-TGGGGTAAAATTAC
1 AATTACTAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTTAGGGTAGAATTAC
26487703 CATTTTGCCC
Statistics
Matches: 246, Mismatches: 47, Indels: 18
0.79 0.15 0.06
Matches are distributed among these distances:
79 3 0.01
80 19 0.08
81 223 0.91
82 1 0.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (82 bp):
AATTACTAAAATACCCCTGTAGGGTAGAATTACCAAAATACCCTTGTTAGGGTAGAATTACTGAA
ATACCCCTATAGGGTAG
Found at i:26488182 original size:22 final size:22
Alignment explanation
Indices: 26488130--26488185 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
26488120 TTAAAGCCTT
* *
26488130 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
26488152 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
26488174 CTGATTATGGCT
1 CTGATTATGGCT
26488186 GTGTACGAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 1 0.04
22 26 0.93
23 1 0.04
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:26488383 original size:27 final size:27
Alignment explanation
Indices: 26488353--26488454 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
26488343 ATTCTGTTAA
* *
26488353 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
26488380 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
26488407 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
26488434 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
26488455 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:26488624 original size:19 final size:19
Alignment explanation
Indices: 26488602--26488659 Score: 58
Period size: 19 Copynumber: 3.4 Consensus size: 19
26488592 TTCTGATTTT
26488602 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
*
26488621 TGATTCTG--A--T--T-T
1 TGATTCTGTTACCTGATAC
26488633 TGATTCTGTTACCTGATAC
1 TGATTCTGTTACCTGATAC
26488652 TGATTCTG
1 TGATTCTG
26488660 ATTCTGATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 14
0.65 0.04 0.30
Matches are distributed among these distances:
12 8 0.27
13 1 0.03
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
18 1 0.03
19 16 0.53
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.47
Consensus pattern (19 bp):
TGATTCTGTTACCTGATAC
Found at i:26488629 original size:6 final size:6
Alignment explanation
Indices: 26488591--26488710 Score: 86
Period size: 6 Copynumber: 19.3 Consensus size: 6
26488581 TTGCATTCAC
* * *
26488591 ATTCTG ATTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTTTG ATTCTG
1 ATTCTG A-TTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
26488641 -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG -TCACCTA ATTCTG ATTCTG
1 ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
26488691 ATTCTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG A-TTCTG AT
26488711 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 12, Indels: 24
0.71 0.10 0.19
Matches are distributed among these distances:
5 6 0.07
6 67 0.74
7 14 0.16
8 3 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:26488686 original size:37 final size:31
Alignment explanation
Indices: 26488591--26488726 Score: 168
Period size: 31 Copynumber: 4.4 Consensus size: 31
26488581 TTGCATTCAC
*
26488591 ATTCTGATTTTTGATTCTGTTACCTGATACTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATACTG
*
26488623 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
* * *
26488654 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTCTGATTCTGTTACCTGATACTG
*
26488685 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATACTG
* *
26488715 TTTCTTATTCTG
1 ATTCTGATTCTG
26488727 TAATGGGTTA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
30 16 0.17
31 68 0.73
32 9 0.10
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATACTG
Found at i:26493641 original size:42 final size:42
Alignment explanation
Indices: 26493587--26493691 Score: 126
Period size: 42 Copynumber: 2.5 Consensus size: 42
26493577 ATAGCCCAAC
*
26493587 TATGGTCTTACACGAAA-TCTCATATCGATTCCATATTCCAT-A
1 TATGGTCTTACAC-AAAGTCTCATATCGATGCCATA-TCCATGA
* * *
26493629 TATGGTCTTACACAAAGTCTTATATTGATGCCATATCCCTGA
1 TATGGTCTTACACAAAGTCTCATATCGATGCCATATCCATGA
26493671 TATGGTCTTACA-AATAGTCTC
1 TATGGTCTTACACAA-AGTCTC
26493692 GGTAACCCTA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
41 9 0.16
42 46 0.84
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (42 bp):
TATGGTCTTACACAAAGTCTCATATCGATGCCATATCCATGA
Found at i:26496573 original size:22 final size:22
Alignment explanation
Indices: 26496547--26496588 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26496537 ATTAAATAAA
26496547 TTATTAAAATAATAATTTATAT
1 TTATTAAAATAATAATTTATAT
* *
26496569 TTATTATATTAATAATTTAT
1 TTATTAAAATAATAATTTAT
26496589 TATATGACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (22 bp):
TTATTAAAATAATAATTTATAT
Found at i:26502031 original size:27 final size:27
Alignment explanation
Indices: 26502000--26502177 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26501990 TAAATTGTAC
26502000 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26502027 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26502053 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26502081 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26502109 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26502136 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26502163 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26502178 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26502114 original size:82 final size:81
Alignment explanation
Indices: 26502001--26502156 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26501991 AAATTGTACA
* *
26502001 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26502065 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26502082 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26502147 TGCGAGTTGA
65 TGCGAATTGA
26502157 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26502168 original size:82 final size:81
Alignment explanation
Indices: 26501997--26502177 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26501987 GATTAAATTG
* *
26501997 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26502062 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26502078 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26502142 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26502160 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26502178 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26513673 original size:40 final size:40
Alignment explanation
Indices: 26513629--26513890 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
26513619 GCTCCTCGTT
* *
26513629 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
26513669 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26513709 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26513748 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
26513787 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
26513826 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
26513867 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26513891 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:26523349 original size:45 final size:45
Alignment explanation
Indices: 26523289--26523461 Score: 211
Period size: 45 Copynumber: 3.7 Consensus size: 45
26523279 TATGTGAGCC
*
26523289 AGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATATGTGTT
* * * * * * *
26523334 AGTGTAATACTATGTCTAGGACATGGCATTGGCACTGACAGATGCGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTG--ATAT--GTGTT
* *
26523384 AGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATATGTGTT
26523429 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
26523462 ACCGACAGAT
Statistics
Matches: 105, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
45 63 0.60
46 2 0.02
47 3 0.03
48 3 0.03
49 3 0.03
50 31 0.30
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (45 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTGATATGTGTT
Found at i:26523452 original size:95 final size:95
Alignment explanation
Indices: 26523284--26523514 Score: 327
Period size: 95 Copynumber: 2.4 Consensus size: 95
26523274 GCTGTTATGT
* * * * *
26523284 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTTGATATGTGTTAGTGTAATACTATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTCAGTGTAAGACCATGT
* * *
26523349 CTAGGACATGGCATTGGCACTGACAGATGC
66 CTAGGACATGGCATCGGCACCGACAGATGA
*
26523379 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTCAGTGTAAGACCATGT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTCAGTGTAAGACCATGT
*
26523444 CTGGGACATGGCATCGGCACCGACAGATGA
66 CTAGGACATGGCATCGGCACCGACAGATGA
* * * *
26523474 GAGCCAATGTAAGACCATTTTCTAGGACATGGCACCAGCCT
1 GAGCCAGTGTAAGACCA-TGTCTGGGACATGGCATCAGCCT
26523515 CGATGTATGA
Statistics
Matches: 120, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
95 100 0.83
96 20 0.17
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (95 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTGATATGTGTCAGTGTAAGACCATGT
CTAGGACATGGCATCGGCACCGACAGATGA
Found at i:26525746 original size:49 final size:49
Alignment explanation
Indices: 26525672--26525845 Score: 249
Period size: 49 Copynumber: 3.5 Consensus size: 49
26525662 TGAGGTCATG
*
26525672 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * *
26525721 TGTGTAGTACTAAGTGCAGGTTACTATGCGTACCCGATAACTTCGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-TT-GGTCGCA
*
26525772 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
26525821 TGTGTAGTACTAAGTGCAGGCTACT
1 TGTGTAGTACTAAGTGCAGGCTACT
26525846 CTGCGTACTA
Statistics
Matches: 108, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 65 0.60
50 4 0.04
51 39 0.36
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:26525851 original size:100 final size:100
Alignment explanation
Indices: 26525671--26525853 Score: 330
Period size: 100 Copynumber: 1.8 Consensus size: 100
26525661 ATGAGGTCAT
* *
26525671 GTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
*
26525736 GCAGGTTACTATGCGTACCCGATAACTTCGATCAC
66 GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
26525771 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
1 GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
*
26525836 GCAGGCTACTCTGCGTAC
66 GCAGGCTACTATGCGTAC
26525854 TAGATAGCCT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
100 79 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (100 bp):
GTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTCGCATGTGTAGTACTAAGT
GCAGGCTACTATGCGTACCCGATAACTTCGATCAC
Found at i:26528965 original size:15 final size:15
Alignment explanation
Indices: 26528947--26528979 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26528937 TGGATTCTCG
26528947 TATCATGGATTTCTT
1 TATCATGGATTTCTT
*
26528962 TATCTTGGATTTCTT
1 TATCATGGATTTCTT
26528977 TAT
1 TAT
26528980 TCTAGGCTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.12, G:0.12, T:0.58
Consensus pattern (15 bp):
TATCATGGATTTCTT
Found at i:26530722 original size:679 final size:679
Alignment explanation
Indices: 26529425--26530784 Score: 2702
Period size: 679 Copynumber: 2.0 Consensus size: 679
26529415 TGCTTGAGAA
26529425 TAAGATTTTATTTCTTCACGGGTAAAAAGACAAATAGTCTAATTAAGAAGTGTATATTTCCAAGA
1 TAAGATTTTATTTCTTCACGGGTAAAAAGACAAATAGTCTAATTAAGAAGTGTATATTTCCAAGA
26529490 AAAATTGAATGTGATTAGAAGATCTGATATTGATAACGTGAAGATAATCTGGGTATTTAAAAATG
66 AAAATTGAATGTGATTAGAAGATCTGATATTGATAACGTGAAGATAATCTGGGTATTTAAAAATG
26529555 TTGAAATGAACATTGTTTATCTTTGGGTACAAATTCTTGAAATGTTGAAAGTTTAAAGATGTATA
131 TTGAAATGAACATTGTTTATCTTTGGGTACAAATTCTTGAAATGTTGAAAGTTTAAAGATGTATA
**
26529620 GTAAGAATCATCAGAATTATTTTTGCCGTTTGGGAATTAGAATGGAAATAGAAAAGGTTAATATG
196 GTAAGAATCATCAGAATTATTTTTGCCGTTTCAGAATTAGAATGGAAATAGAAAAGGTTAATATG
26529685 GATTTTCTTGTCTGGATCGTTCCTGTCCTTGAAAGAGGAAAGTAATATGTAGTGTTGTTAAACGT
261 GATTTTCTTGTCTGGATCGTTCCTGTCCTTGAAAGAGGAAAGTAATATGTAGTGTTGTTAAACGT
26529750 TATGAGATATGCAAATTATGCTAGTATACCCAAATGTCTACTCACCAGATTCATAGGATTTCATG
326 TATGAGATATGCAAATTATGCTAGTATACCCAAATGTCTACTCACCAGATTCATAGGATTTCATG
26529815 TCTTTATGAATGTTGGATATCATGGAATTTTAATATCCACAAATCGGATTGAGATCCGGGATTCA
391 TCTTTATGAATGTTGGATATCATGGAATTTTAATATCCACAAATCGGATTGAGATCCGGGATTCA
26529880 TAGCATGATTTCTTGGGAAAGCTAGAGGAGGCTTTGAAATGAAAGGTAACTAAGAGTTGAATTGG
456 TAGCATGATTTCTTGGGAAAGCTAGAGGAGGCTTTGAAATGAAAGGTAACTAAGAGTTGAATTGG
26529945 ACTGTGTGGAATTATAAAGAGTATGAGGTTGAGATGAACTGACTAGTTTCGCTATTTGAATTTAA
521 ACTGTGTGGAATTATAAAGAGTATGAGGTTGAGATGAACTGACTAGTTTCGCTATTTGAATTTAA
26530010 AAAGATTCAGGGGCGAATGTATATGTAACATGATGGTATGGATCAAACTTTTGAGTACATGAGCT
586 AAAGATTCAGGGGCGAATGTATATGTAACATGATGGTATGGATCAAACTTTTGAGTACATGAGCT
26530075 TTCTGGTACAGATTAAGTTTCGGTGAAAC
651 TTCTGGTACAGATTAAGTTTCGGTGAAAC
26530104 TAAGATTTTATTTCTTCACGGGTAAAAAGACAAATAGTCTAATTAAGAAGTGTATATTTCCAAGA
1 TAAGATTTTATTTCTTCACGGGTAAAAAGACAAATAGTCTAATTAAGAAGTGTATATTTCCAAGA
26530169 AAAATTGAATGTGATTAGAAGATCTGATATTGATAACGTGAAGATAATCTGGGTATTTAAAAATG
66 AAAATTGAATGTGATTAGAAGATCTGATATTGATAACGTGAAGATAATCTGGGTATTTAAAAATG
26530234 TTGAAATGAACATTGTTTATCTTTGGGTACAAATTCTTGAAATGTTGAAAGTTTAAAGATGTATA
131 TTGAAATGAACATTGTTTATCTTTGGGTACAAATTCTTGAAATGTTGAAAGTTTAAAGATGTATA
26530299 GTAAGAATCATCAGAATTATTTTTGCCGTTTCAGAATTAGAATGGAAATAGAAAAGGTTAATATG
196 GTAAGAATCATCAGAATTATTTTTGCCGTTTCAGAATTAGAATGGAAATAGAAAAGGTTAATATG
26530364 GATTTTCTTGTCTGGATCGTTCCTGTCCTTGAAAGAGGAAAGTAATATGTAGTGTTGTTAAACGT
261 GATTTTCTTGTCTGGATCGTTCCTGTCCTTGAAAGAGGAAAGTAATATGTAGTGTTGTTAAACGT
26530429 TATGAGATATGCAAATTATGCTAGTATACCCAAATGTCTACTCACCAGATTCATAGGATTTCATG
326 TATGAGATATGCAAATTATGCTAGTATACCCAAATGTCTACTCACCAGATTCATAGGATTTCATG
26530494 TCTTTATGAATGTTGGATATCATGGAATTTTAATATCCACAAATCGGATTGAGATCCGGGATTCA
391 TCTTTATGAATGTTGGATATCATGGAATTTTAATATCCACAAATCGGATTGAGATCCGGGATTCA
26530559 TAGCATGATTTCTTGGGAAAGCTAGAGGAGGCTTTGAAATGAAAGGTAACTAAGAGTTGAATTGG
456 TAGCATGATTTCTTGGGAAAGCTAGAGGAGGCTTTGAAATGAAAGGTAACTAAGAGTTGAATTGG
26530624 ACTGTGTGGAATTATAAAGAGTATGAGGTTGAGATGAACTGACTAGTTTCGCTATTTGAATTTAA
521 ACTGTGTGGAATTATAAAGAGTATGAGGTTGAGATGAACTGACTAGTTTCGCTATTTGAATTTAA
26530689 AAAGATTCAGGGGCGAATGTATATGTAACATGATGGTATGGATCAAACTTTTGAGTACATGAGCT
586 AAAGATTCAGGGGCGAATGTATATGTAACATGATGGTATGGATCAAACTTTTGAGTACATGAGCT
26530754 TTCTGGTACAGATTAAGTTTCGGTGAAAC
651 TTCTGGTACAGATTAAGTTTCGGTGAAAC
26530783 TA
1 TA
26530785 TTGTAAAGTG
Statistics
Matches: 679, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
679 679 1.00
ACGTcount: A:0.34, C:0.10, G:0.22, T:0.34
Consensus pattern (679 bp):
TAAGATTTTATTTCTTCACGGGTAAAAAGACAAATAGTCTAATTAAGAAGTGTATATTTCCAAGA
AAAATTGAATGTGATTAGAAGATCTGATATTGATAACGTGAAGATAATCTGGGTATTTAAAAATG
TTGAAATGAACATTGTTTATCTTTGGGTACAAATTCTTGAAATGTTGAAAGTTTAAAGATGTATA
GTAAGAATCATCAGAATTATTTTTGCCGTTTCAGAATTAGAATGGAAATAGAAAAGGTTAATATG
GATTTTCTTGTCTGGATCGTTCCTGTCCTTGAAAGAGGAAAGTAATATGTAGTGTTGTTAAACGT
TATGAGATATGCAAATTATGCTAGTATACCCAAATGTCTACTCACCAGATTCATAGGATTTCATG
TCTTTATGAATGTTGGATATCATGGAATTTTAATATCCACAAATCGGATTGAGATCCGGGATTCA
TAGCATGATTTCTTGGGAAAGCTAGAGGAGGCTTTGAAATGAAAGGTAACTAAGAGTTGAATTGG
ACTGTGTGGAATTATAAAGAGTATGAGGTTGAGATGAACTGACTAGTTTCGCTATTTGAATTTAA
AAAGATTCAGGGGCGAATGTATATGTAACATGATGGTATGGATCAAACTTTTGAGTACATGAGCT
TTCTGGTACAGATTAAGTTTCGGTGAAAC
Found at i:26532221 original size:50 final size:49
Alignment explanation
Indices: 26532166--26532297 Score: 183
Period size: 50 Copynumber: 2.7 Consensus size: 49
26532156 NNNNNNNNNN
**
26532166 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* *
26532215 AGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCGGATAATT
1 -GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
* * * *
26532265 GGTCGCATGTATAGTACCAAGTGCAGGCTACTA
1 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTA
26532298 TGCGTACTAG
Statistics
Matches: 73, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 28 0.38
50 45 0.62
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (49 bp):
GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATAATT
Found at i:26536502 original size:27 final size:27
Alignment explanation
Indices: 26536472--26536558 Score: 77
Period size: 27 Copynumber: 3.2 Consensus size: 27
26536462 TTTAACACCT
26536472 TAGGGGCAAAAT-GGTAATTCTACCCTA
1 TAGGGG-AAAATCGGTAATTCTACCCTA
* **
26536499 TAGGGGTATTTCGGTAATTCTACCCTA
1 TAGGGGAAAATCGGTAATTCTACCCTA
* * ** *
26536526 CAGGGGTATTTCGGTTATTCTACCCTA
1 TAGGGGAAAATCGGTAATTCTACCCTA
*
26536553 CAGGGG
1 TAGGGG
26536559 TATTTTGGTA
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
26 2 0.04
27 52 0.96
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (27 bp):
TAGGGGAAAATCGGTAATTCTACCCTA
Found at i:26536559 original size:27 final size:27
Alignment explanation
Indices: 26536484--26536575 Score: 157
Period size: 27 Copynumber: 3.4 Consensus size: 27
26536474 GGGGCAAAAT
*
26536484 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
26536511 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
26536538 GGTTATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
26536565 GGTAATTCTAC
1 GGTAATTCTAC
26536576 AAAGAAGGGG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:26536584 original size:27 final size:28
Alignment explanation
Indices: 26536500--26536625 Score: 106
Period size: 27 Copynumber: 4.6 Consensus size: 28
26536490 TCTACCCTAT
*
26536500 AGGGGTATTTCGGTAATTCTAC---CCTA
1 AGGGGTATTTTGGTAATTCTACAAACC-A
* *
26536526 CAGGGGTATTTCGGTTATTCTAC---CCTA
1 -AGGGGTATTTTGGTAATTCTACAAACC-A
*
26536553 CAGGGGTATTTTGGTAATTCTACAAA-GA
1 -AGGGGTATTTTGGTAATTCTACAAACCA
*
26536581 AGGGGTATTTTGGTAATTTTACAAACCA
1 AGGGGTATTTTGGTAATTCTACAAACCA
*
26536609 A-TGGTATTTTGGTAATT
1 AGGGGTATTTTGGTAATT
26536626 TTATTGATCG
Statistics
Matches: 88, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
27 85 0.97
28 3 0.03
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.37
Consensus pattern (28 bp):
AGGGGTATTTTGGTAATTCTACAAACCA
Found at i:26536585 original size:54 final size:54
Alignment explanation
Indices: 26536488--26536590 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
26536478 CAAAATGGTA
* ** *
26536488 ATTCTACCCTATAGGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCGGTT
1 ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCAAAAAGGGGTATTTCGGTT
*
26536542 ATTCTACCCTACAGGGGTATTTTGGTAATTCTA-CAAAGAAGGGGTATTT
1 ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCAAA-AAGGGGTATTT
26536591 TGGTAATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
53 2 0.05
54 41 0.95
ACGTcount: A:0.24, C:0.17, G:0.22, T:0.36
Consensus pattern (54 bp):
ATTCTACCCTACAGGGGTATTTCGGTAATTCTACCAAAAAGGGGTATTTCGGTT
Found at i:26536615 original size:54 final size:54
Alignment explanation
Indices: 26536557--26536680 Score: 144
Period size: 54 Copynumber: 2.3 Consensus size: 54
26536547 ACCCTACAGG
26536557 GGTATTTTGGTAATTCTACAAAGA-AG-GGGTATTTTGGTAATTTTACAAACCAAT
1 GGTATTTTGGTAATT-T-CAAAGATAGAGGGTATTTTGGTAATTTTACAAACCAAT
* ** * **
26536611 GGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAACCAAT
1 GGTATTTTGGTAATTTCAAAGATAGAGGGTATTTTGGTAATTTTACAAACCAAT
**
26536665 GGTATTTCAGTAATTT
1 GGTATTTTGGTAATTT
26536681 TTTATATTGA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
52 3 0.05
53 2 0.03
54 55 0.92
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (54 bp):
GGTATTTTGGTAATTTCAAAGATAGAGGGTATTTTGGTAATTTTACAAACCAAT
Found at i:26536626 original size:27 final size:27
Alignment explanation
Indices: 26536556--26536681 Score: 119
Period size: 27 Copynumber: 4.7 Consensus size: 27
26536546 TACCCTACAG
* *
26536556 GGGTATTTTGGTAATTCTACAAA-GAA
1 GGGTATTTTGGTAATTTTACAAACCAA
26536582 GGGGTATTTTGGTAATTTTACAAACCAA
1 -GGGTATTTTGGTAATTTTACAAACCAA
* *** * *
26536610 TGGTATTTTGGTAATTTTATTGATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
**
26536637 GGGTATTTTGGTAATTTTGTAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* **
26536664 TGGTATTTCAGTAATTTT
1 GGGTATTTTGGTAATTTT
26536682 TTATATTGAG
Statistics
Matches: 81, Mismatches: 17, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
27 79 0.98
28 2 0.02
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:26536703 original size:54 final size:54
Alignment explanation
Indices: 26536591--26536713 Score: 140
Period size: 54 Copynumber: 2.3 Consensus size: 54
26536581 AGGGGTATTT
** ** ***
26536591 TGGTAATTTTACAAACCAATGGTATTTTGGTAATTTTATTGATCGAGGGTATTT
1 TGGTAATTTTGTAAACCAATGGTATTTCAGTAATTTTATTGATCGAGGGTAAAA
* *
26536645 TGGTAATTTTGTAAACCAATGGTATTTCAGTAATTTT-TTATATTGAGGGTAAAA
1 TGGTAATTTTGTAAACCAATGGTATTTCAGTAATTTTATT-GATCGAGGGTAAAA
*
26536699 TGGTAATTCTGTAAA
1 TGGTAATTTTGTAAA
26536714 TCGAGGGTAA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
53 2 0.03
54 56 0.97
ACGTcount: A:0.31, C:0.07, G:0.20, T:0.43
Consensus pattern (54 bp):
TGGTAATTTTGTAAACCAATGGTATTTCAGTAATTTTATTGATCGAGGGTAAAA
Found at i:26536704 original size:27 final size:27
Alignment explanation
Indices: 26536689--26536869 Score: 265
Period size: 27 Copynumber: 6.7 Consensus size: 27
26536679 TTTTTATATT
26536689 GAGGGTAAAATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
*
26536716 GAGGGTAAGATGGTAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
26536743 GAGGG-AAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
26536769 GAGGGTAAAACGGTAATTCTGTAAACC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* * *
26536796 GATGGTAAAATAGTAATTCTATAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
* *
26536823 GAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAATGGTAATTCTGTAAATC
26536850 GAGGGTAAAATGGTAATTCT
1 GAGGGTAAAATGGTAATTCT
26536870 ATCTTACAGG
Statistics
Matches: 133, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 23 0.17
27 110 0.83
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (27 bp):
GAGGGTAAAATGGTAATTCTGTAAATC
Found at i:26536787 original size:80 final size:81
Alignment explanation
Indices: 26536689--26536869 Score: 267
Period size: 80 Copynumber: 2.2 Consensus size: 81
26536679 TTTTTATATT
* * * *
26536689 GAGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAGATGGTAATTCTGTAAATCGAGGG-AAAAT
1 GAGGGTAAAATGGTAATTCTGTAAACCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAA-
26536753 AG-TAATTCTATAAATC
65 AGATAATTCTATAAATC
* * *
26536769 GAGGGTAAAACGGTAATTCTGTAAACCGATGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAC
1 GAGGGTAAAATGGTAATTCTGTAAACCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAA
*
26536834 GATAATTCTGTAAATC
66 GATAATTCTATAAATC
26536850 GAGGGTAAAATGGTAATTCT
1 GAGGGTAAAATGGTAATTCT
26536870 ATCTTACAGG
Statistics
Matches: 90, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
80 54 0.60
81 36 0.40
ACGTcount: A:0.39, C:0.09, G:0.24, T:0.28
Consensus pattern (81 bp):
GAGGGTAAAATGGTAATTCTGTAAACCGAGGGTAAAATAGTAATTCTATAAATCGAGGGTAAAAA
GATAATTCTATAAATC
Found at i:26538337 original size:6 final size:6
Alignment explanation
Indices: 26538319--26538378 Score: 52
Period size: 6 Copynumber: 9.8 Consensus size: 6
26538309 AAGAAACATT
* *
26538319 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAGGTG AT-AGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
*
26538368 ATCAGT ATCAG
1 ATCAGA ATCAG
26538379 GTAACATAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 3 0.07
6 37 0.82
7 3 0.07
8 2 0.04
ACGTcount: A:0.45, C:0.13, G:0.20, T:0.22
Consensus pattern (6 bp):
ATCAGA
Found at i:26538389 original size:25 final size:25
Alignment explanation
Indices: 26538333--26538389 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
26538323 GAACTAGAAT
* *
26538333 CAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATCAGGTAA
* *
26538358 TAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
26538383 CATAATC
1 CAGAATC
26538390 CCATCGCAGC
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:26542578 original size:29 final size:29
Alignment explanation
Indices: 26542525--26542652 Score: 134
Period size: 29 Copynumber: 4.4 Consensus size: 29
26542515 ACGTGTTACA
* *
26542525 ATAGCCACAAAAACTTC-CTTTAACAGAG
1 ATAGCCACAAAGACTTCTTTTTAACAGAG
* * *
26542553 ATAACCATAAAGACTTCTTTTTAACAAAG
1 ATAGCCACAAAGACTTCTTTTTAACAGAG
* * *
26542582 ATTGCCACAAAGGCTTCTTTATAACAGAG
1 ATAGCCACAAAGACTTCTTTTTAACAGAG
* * *
26542611 ATCGCCACAAAGACTTC-CTTTAATCAAAG
1 ATAGCCACAAAGACTTCTTTTTAA-CAGAG
26542640 ATAGCCACAAAGA
1 ATAGCCACAAAGA
26542653 TACTTCTTCA
Statistics
Matches: 81, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
28 18 0.22
29 63 0.78
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (29 bp):
ATAGCCACAAAGACTTCTTTTTAACAGAG
Found at i:26542623 original size:58 final size:57
Alignment explanation
Indices: 26542525--26542652 Score: 159
Period size: 58 Copynumber: 2.2 Consensus size: 57
26542515 ACGTGTTACA
* * *
26542525 ATAGCCACAAAAACTTCCTTTAACAGAGATAACCATAAAGACTTCTTTTTAA-CAAAG
1 ATAGCCACAAAGACTTCCTTTAACAGAGATAACCACAAAGACTTC-CTTTAATCAAAG
* * * **
26542582 ATTGCCACAAAGGCTTCTTTATAACAGAGATCGCCACAAAGACTTCCTTTAATCAAAG
1 ATAGCCACAAAGACTTCCTT-TAACAGAGATAACCACAAAGACTTCCTTTAATCAAAG
26542640 ATAGCCACAAAGA
1 ATAGCCACAAAGA
26542653 TACTTCTTCA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
57 21 0.36
58 38 0.64
ACGTcount: A:0.41, C:0.23, G:0.12, T:0.24
Consensus pattern (57 bp):
ATAGCCACAAAGACTTCCTTTAACAGAGATAACCACAAAGACTTCCTTTAATCAAAG
Found at i:26555502 original size:32 final size:33
Alignment explanation
Indices: 26555453--26555526 Score: 116
Period size: 32 Copynumber: 2.3 Consensus size: 33
26555443 CAATGTTCCT
* *
26555453 TGAACAAA-ATCTTGAATTTGGGTAAGAAAAA-
1 TGAAGAAACATCTTGAATTTGGGTAAAAAAAAC
26555484 TGAAGAAACATCTTGAATTTGGGTAAAAAAAAC
1 TGAAGAAACATCTTGAATTTGGGTAAAAAAAAC
26555517 TGAAGAAACA
1 TGAAGAAACA
26555527 ATTCATGCAG
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
31 7 0.18
32 22 0.56
33 10 0.26
ACGTcount: A:0.50, C:0.08, G:0.19, T:0.23
Consensus pattern (33 bp):
TGAAGAAACATCTTGAATTTGGGTAAAAAAAAC
Found at i:26557748 original size:20 final size:19
Alignment explanation
Indices: 26557723--26557767 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
26557713 GTATGCTAAT
* *
26557723 AAATAATTTAAAAATTATAA
1 AAATAATATAAAAAGTA-AA
26557743 AAATAATATAAAAAGTAAA
1 AAATAATATAAAAAGTAAA
26557762 AAATAA
1 AAATAA
26557768 AAAGTAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (19 bp):
AAATAATATAAAAAGTAAA
Found at i:26557787 original size:14 final size:14
Alignment explanation
Indices: 26557750--26557780 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
26557740 TAAAAATAAT
26557750 ATAAAAAGTAAAAA
1 ATAAAAAGTAAAAA
26557764 ATAAAAAGTAAAAA
1 ATAAAAAGTAAAAA
26557778 ATA
1 ATA
26557781 GGGAGTACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.16
Consensus pattern (14 bp):
ATAAAAAGTAAAAA
Found at i:26559471 original size:19 final size:19
Alignment explanation
Indices: 26559447--26559485 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
26559437 ATATAAAATA
26559447 TTATAAATTTCAATGTTAT
1 TTATAAATTTCAATGTTAT
26559466 TTATAAATTTCAATGTTAT
1 TTATAAATTTCAATGTTAT
26559485 T
1 T
26559486 AAACATACAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.05, G:0.05, T:0.54
Consensus pattern (19 bp):
TTATAAATTTCAATGTTAT
Found at i:26560182 original size:16 final size:17
Alignment explanation
Indices: 26560154--26560185 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26560144 TTAAGTTTTA
26560154 ATTAAGATTTATTTATT
1 ATTAAGATTTATTTATT
26560171 ATTAAG-TTTATTTAT
1 ATTAAGATTTATTTAT
26560186 GACATTGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.59
Consensus pattern (17 bp):
ATTAAGATTTATTTATT
Found at i:26560372 original size:15 final size:15
Alignment explanation
Indices: 26560352--26560381 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26560342 TTAAATAATG
26560352 AAAAGATAAGAAAAT
1 AAAAGATAAGAAAAT
26560367 AAAAGATAAGAAAAT
1 AAAAGATAAGAAAAT
26560382 CTCAAATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.73, C:0.00, G:0.13, T:0.13
Consensus pattern (15 bp):
AAAAGATAAGAAAAT
Found at i:26567756 original size:40 final size:40
Alignment explanation
Indices: 26567701--26567875 Score: 332
Period size: 40 Copynumber: 4.4 Consensus size: 40
26567691 TATGTGCATA
*
26567701 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAG
*
26567741 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAG
26567781 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAG
26567821 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAG
1 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAG
26567861 GCATTCGTGCTGGTT
1 GCATTCGTGCTGGTT
26567876 GTTACATCTG
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (40 bp):
GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAG
Found at i:26567899 original size:80 final size:80
Alignment explanation
Indices: 26567701--26567899 Score: 254
Period size: 80 Copynumber: 2.5 Consensus size: 80
26567691 TATGTGCATA
* * * ** *
26567701 GCATTCGTGCGGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTATTATAACCG
1 GCATTCGTGCTGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTATTATAACCG
26567766 GGTTAAGTCCCGAAG
66 GGTTAAGTCCCGAAG
* * ** * *
26567781 GCATTCGTGCTGGTTATTATAACCGGGTTAAGTCCCGAAGGCATTCGTGCTGGTTATTATAACCG
1 GCATTCGTGCTGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTATTATAACCG
26567846 GGTTAAGTCCCGAAG
66 GGTTAAGTCCCGAAG
* * * *
26567861 GCATTCGTGCTGGTTGTTACATCTGAGCCAAATTCCGAA
1 GCATTCGTGCTGGTTATTACAACCGAGCCAAATCCCGAA
26567900 AGTATTTATG
Statistics
Matches: 108, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 108 1.00
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.29
Consensus pattern (80 bp):
GCATTCGTGCTGGTTATTACAACCGAGCCAAATCCCGAAGGCATTCGTGCGGGTTATTATAACCG
GGTTAAGTCCCGAAG
Found at i:26574556 original size:6 final size:6
Alignment explanation
Indices: 26574538--26574606 Score: 59
Period size: 6 Copynumber: 10.8 Consensus size: 6
26574528 AAGAGTCTGT
* * *
26574538 AGAAAA AGTAAA AGAAAA AGAACAA GAAAAAA ATAAAA AGAAAA AG-AAA
1 AGAAAA AGAAAA AGAAAA AGAA-AA -AGAAAA AGAAAA AGAAAA AGAAAA
26574587 AGAAAA TCGAGAAAA AGAAA
1 AGAAAA ---AGAAAA AGAAA
26574607 GGAAAATTGA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
5 5 0.10
6 34 0.65
7 4 0.08
8 3 0.06
9 6 0.12
ACGTcount: A:0.77, C:0.03, G:0.16, T:0.04
Consensus pattern (6 bp):
AGAAAA
Found at i:26574575 original size:20 final size:20
Alignment explanation
Indices: 26574547--26574587 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26574537 TAGAAAAAGT
*
26574547 AAAAGAAAAAGAACAAGAAA
1 AAAAGAAAAAGAAAAAGAAA
*
26574567 AAAATAAAAAGAAAAAGAAA
1 AAAAGAAAAAGAAAAAGAAA
26574587 A
1 A
26574588 GAAAATCGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.83, C:0.02, G:0.12, T:0.02
Consensus pattern (20 bp):
AAAAGAAAAAGAAAAAGAAA
Found at i:26574601 original size:19 final size:20
Alignment explanation
Indices: 26574576--26574621 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
26574566 AAAAATAAAA
26574576 AGAAAAAGAAAAGAAAATCG
1 AGAAAAAGAAAAGAAAATCG
* *
26574596 AGAAAAAGAAAGGAAAATTG
1 AGAAAAAGAAAAGAAAATCG
26574616 AGAAAA
1 AGAAAA
26574622 TTGAGGTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.70, C:0.02, G:0.22, T:0.07
Consensus pattern (20 bp):
AGAAAAAGAAAAGAAAATCG
Found at i:26574601 original size:26 final size:26
Alignment explanation
Indices: 26574540--26574606 Score: 82
Period size: 26 Copynumber: 2.6 Consensus size: 26
26574530 GAGTCTGTAG
*
26574540 AAAAAGTAAAAGAAAAAGAACAAGAA
1 AAAAAGAAAAAGAAAAAGAACAAGAA
*
26574566 AAAAATAAAAAGAAAAAGAA-AAGAA
1 AAAAAGAAAAAGAAAAAGAACAAGAA
**
26574591 AATCGAGAAAAAGAAA
1 AA-AAAGAAAAAGAAA
26574607 GGAAAATTGA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 7 0.20
26 28 0.80
ACGTcount: A:0.78, C:0.03, G:0.15, T:0.04
Consensus pattern (26 bp):
AAAAAGAAAAAGAAAAAGAACAAGAA
Found at i:26580526 original size:43 final size:43
Alignment explanation
Indices: 26580479--26580571 Score: 150
Period size: 43 Copynumber: 2.2 Consensus size: 43
26580469 GACACAACCA
* *
26580479 TGTGTCTCTACTTCGAATGCCCACACGGCCTAAGACACGGGCG
1 TGTGTCTCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
*
26580522 TGTGTCCCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
1 TGTGTCTCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
*
26580565 TATGTCT
1 TGTGTCT
26580572 TAGCCATGTG
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.23, C:0.32, G:0.23, T:0.23
Consensus pattern (43 bp):
TGTGTCTCTACTTCGAATACCCACACAGCCTAAGACACGGGCG
Found at i:26585917 original size:17 final size:16
Alignment explanation
Indices: 26585895--26585928 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
26585885 GGGGATGATG
26585895 TTTGTTTGATGTTTATT
1 TTTGTTTG-TGTTTATT
*
26585912 TTTGTTTGTTTTTATT
1 TTTGTTTGTGTTTATT
26585928 T
1 T
26585929 CATAATATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.09, C:0.00, G:0.15, T:0.76
Consensus pattern (16 bp):
TTTGTTTGTGTTTATT
Found at i:26592957 original size:16 final size:16
Alignment explanation
Indices: 26592932--26593005 Score: 84
Period size: 16 Copynumber: 4.8 Consensus size: 16
26592922 AAAGTTGATA
*
26592932 ATAATTAATATATATT
1 ATAATGAATATATATT
26592948 ATAATG-A-ATATATT
1 ATAATGAATATATATT
*
26592962 AT-AT-ATTATATATT
1 ATAATGAATATATATT
*
26592976 AATAATTAATATATATT
1 -ATAATGAATATATATT
26592993 ATAATGAATATAT
1 ATAATGAATATAT
26593006 TATATATTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
13 2 0.04
14 16 0.33
15 3 0.06
16 19 0.39
17 9 0.18
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (16 bp):
ATAATGAATATATATT
Found at i:26593021 original size:7 final size:8
Alignment explanation
Indices: 26592930--26593021 Score: 74
Period size: 7 Copynumber: 12.2 Consensus size: 8
26592920 ATAAAGTTGA
26592930 TAATA-AT
1 TAATATAT
26592937 TAATATA-
1 TAATATAT
*
26592944 TATTATAAT
1 TAATAT-AT
*
26592953 GAATATAT
1 TAATATAT
26592961 T-ATATAT
1 TAATATAT
26592968 T-ATATAT
1 TAATATAT
26592975 TAATA-AT
1 TAATATAT
26592982 TAATATA-
1 TAATATAT
*
26592989 TATTATAAT
1 TAATAT-AT
*
26592998 GAATATAT
1 TAATATAT
26593006 T-ATATAT
1 TAATATAT
26593013 TAATA-AT
1 TAATATAT
26593020 TA
1 TA
26593022 TCATCCTTTT
Statistics
Matches: 69, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
7 47 0.68
8 14 0.20
9 8 0.12
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (8 bp):
TAATATAT
Found at i:26600852 original size:48 final size:48
Alignment explanation
Indices: 26600720--26600854 Score: 234
Period size: 48 Copynumber: 2.8 Consensus size: 48
26600710 TAAATATTTA
* * * *
26600720 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
26600768 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
26600816 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
26600855 GGCGATGTGC
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
48 83 1.00
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAGATATG
Found at i:26601051 original size:37 final size:37
Alignment explanation
Indices: 26601001--26601187 Score: 295
Period size: 37 Copynumber: 5.1 Consensus size: 37
26600991 GGAAATATAT
26601001 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
26601038 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
26601075 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
** **
26601112 AGC-TCTAAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGT-AAGACCCGATGACTACGTGTGGAGATTATG
* * *
26601149 TCTGGGTAAGACCCGATGGCTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
26601186 TC
1 TC
26601188 TGAGCTAAAG
Statistics
Matches: 137, Mismatches: 11, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
36 1 0.01
37 135 0.99
38 1 0.01
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:26603899 original size:15 final size:15
Alignment explanation
Indices: 26603881--26603949 Score: 75
Period size: 15 Copynumber: 4.6 Consensus size: 15
26603871 ATCTTGGGTT
*
26603881 TCTTTATCCTGGATC
1 TCTTTATTCTGGATC
*
26603896 TCTTTATTCTGGATT
1 TCTTTATTCTGGATC
* *
26603911 TCTTTATTCTGGGTT
1 TCTTTATTCTGGATC
* * *
26603926 TCTCTATTTTGGATT
1 TCTTTATTCTGGATC
26603941 TCTTTATTC
1 TCTTTATTC
26603950 GGTTTTCTTA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 46 1.00
ACGTcount: A:0.12, C:0.17, G:0.13, T:0.58
Consensus pattern (15 bp):
TCTTTATTCTGGATC
Found at i:26603948 original size:30 final size:29
Alignment explanation
Indices: 26603874--26603961 Score: 97
Period size: 30 Copynumber: 3.0 Consensus size: 29
26603864 ATATCGTATC
* * *
26603874 TTGGGTTTCTTTATCCTGGATCTCTTTATT
1 TTGGATTTCTTTATTCTGGATTTC-TTATT
* *
26603904 CTGGATTTCTTTATTCTGGGTTTCTCTATT
1 TTGGATTTCTTTATTCTGGATTTCT-TATT
*
26603934 TTGGATTTCTTTATTC-GGTTTTCTTATT
1 TTGGATTTCTTTATTCTGGATTTCTTATT
26603962 ATCTTTGTTC
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
28 4 0.08
29 8 0.16
30 38 0.76
ACGTcount: A:0.10, C:0.15, G:0.16, T:0.59
Consensus pattern (29 bp):
TTGGATTTCTTTATTCTGGATTTCTTATT
Found at i:26619541 original size:40 final size:40
Alignment explanation
Indices: 26619486--26619668 Score: 253
Period size: 40 Copynumber: 4.6 Consensus size: 40
26619476 TATTCGAATG
*
26619486 ATATCCGGGCTAAGTCCCGAAGGAATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
26619526 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
*
26619566 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
26619606 ATATCCGGGCCTAGGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGG-CTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
* *
26619647 ATATCC-GGCTAAATCCTGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26619669 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 10 0.08
40 85 0.67
41 29 0.23
42 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:26629614 original size:38 final size:38
Alignment explanation
Indices: 26629563--26629771 Score: 148
Period size: 38 Copynumber: 5.0 Consensus size: 38
26629553 CGAATGGAAA
* *
26629563 AACATAGTGCTAAGTGGATATACCACGGTTATACGTGT
1 AACATGGTGCTAAGTGGATATACCACGGTTATACATGT
*
26629601 AACATGGTGCTAAGTGGATATAGCACGATTTCATGTATTGATACATGT
1 AACATGGTGCTAAGTGGATATA-C-C-A---C--G-GTT-ATACATGT
* * * *
26629649 AACGTGGTGCTATGTGGATATTCCACGGTTACATATATTGATTCATT
1 AACATGGTGCTAAGTGGATATACCACGGTT--ATACA-TG------T
*
26629696 AACATGGTGCTAAGTGGATATACCACGGTTAAACATGT
1 AACATGGTGCTAAGTGGATATACCACGGTTATACATGT
* * *
26629734 AACGTGGTGCTAAGTGGGTATGCCACGGTTATACATGT
1 AACATGGTGCTAAGTGGATATACCACGGTTATACATGT
26629772 TAATTTGAAA
Statistics
Matches: 135, Mismatches: 18, Indels: 36
0.71 0.10 0.19
Matches are distributed among these distances:
38 56 0.41
39 3 0.02
40 6 0.04
41 3 0.02
42 1 0.01
44 3 0.02
45 4 0.03
46 2 0.01
47 31 0.23
48 26 0.19
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (38 bp):
AACATGGTGCTAAGTGGATATACCACGGTTATACATGT
Found at i:26629715 original size:47 final size:48
Alignment explanation
Indices: 26629593--26629726 Score: 180
Period size: 48 Copynumber: 2.8 Consensus size: 48
26629583 TACCACGGTT
* * * * *
26629593 ATACGTGTAACATGGTGCTAAGTGGATATAGCACGATTTCATGTATTG
1 ATACATGTAACATGGTGCTAAGTGGATATACCACGGTTACATATATTG
* * *
26629641 ATACATGTAACGTGGTGCTATGTGGATATTCCACGGTTACATATATTG
1 ATACATGTAACATGGTGCTAAGTGGATATACCACGGTTACATATATTG
*
26629689 ATTCAT-TAACATGGTGCTAAGTGGATATACCACGGTTA
1 ATACATGTAACATGGTGCTAAGTGGATATACCACGGTTA
26629727 AACATGTAAC
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
47 29 0.39
48 45 0.61
ACGTcount: A:0.29, C:0.14, G:0.23, T:0.34
Consensus pattern (48 bp):
ATACATGTAACATGGTGCTAAGTGGATATACCACGGTTACATATATTG
Found at i:26637378 original size:47 final size:48
Alignment explanation
Indices: 26637264--26637387 Score: 169
Period size: 48 Copynumber: 2.6 Consensus size: 48
26637254 AAAAACGTTA
* *
26637264 TGCTAAGTGGATATACCACGATTACACGTATTGATACATGTAACATGG
1 TGCTAAGTGGATATACCACGGTTACACATATTGATACATGTAACATGG
* * * * *
26637312 TGCTAAATGGATATGCCACGGTTACATATATTGATTCAT-TAACGTGG
1 TGCTAAGTGGATATACCACGGTTACACATATTGATACATGTAACATGG
*
26637359 TGCTAAGTGGATATACCACGGTTAAACAT
1 TGCTAAGTGGATATACCACGGTTACACAT
26637388 GTAACGTGGT
Statistics
Matches: 65, Mismatches: 11, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
47 32 0.49
48 33 0.51
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (48 bp):
TGCTAAGTGGATATACCACGGTTACACATATTGATACATGTAACATGG
Found at i:26637402 original size:38 final size:38
Alignment explanation
Indices: 26637351--26637427 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
26637341 ATTGATTCAT
*
26637351 TAACGTGGTGCTAAGTGGATATACCACGGTTAAACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
* *
26637389 TAACGTGGTGCTAAGTGGATATGCCACAGTTATACATG
1 TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
26637427 T
1 T
26637428 TAATTTGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.29
Consensus pattern (38 bp):
TAACGTGGTGCTAAGTGGATATACCACAGTTAAACATG
Found at i:26642624 original size:15 final size:17
Alignment explanation
Indices: 26642606--26642637 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
26642596 TAGCATAATT
26642606 TACCAAA-TCA-ATTCA
1 TACCAAACTCACATTCA
26642621 TACCAAACTCACATTCA
1 TACCAAACTCACATTCA
26642638 CAAGTATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (17 bp):
TACCAAACTCACATTCA
Found at i:26643897 original size:21 final size:22
Alignment explanation
Indices: 26643851--26643897 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
26643841 TCTTAATCTA
26643851 TAAT-ATCAAATTTATCTCATT
1 TAATCATCAAATTTATCTCATT
*
26643872 CAATCATCAAA-TTAT-TCAATT
1 TAATCATCAAATTTATCTC-ATT
26643893 TAATC
1 TAATC
26643898 CCAAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 2 0.09
21 14 0.64
22 6 0.27
ACGTcount: A:0.40, C:0.17, G:0.00, T:0.43
Consensus pattern (22 bp):
TAATCATCAAATTTATCTCATT
Found at i:26646661 original size:51 final size:51
Alignment explanation
Indices: 26646521--26646662 Score: 162
Period size: 51 Copynumber: 2.8 Consensus size: 51
26646511 CGGATGCCCG
* *
26646521 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTCACAAA
1 GTGGCCTGCACATAGTACCACACTTGTGA-TCAAAGCTATCTTCTTCACAAA
* * * * *
26646572 GCGGCCTTCACATAGTACCACACTTGTGACCAAGGCTATCTT-TTACACATA
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTATCTTCTT-CACAAA
* **
26646623 GTGGCCTGCACCTAGTACCACACAGGTGATCAAAGCTATC
1 GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTATC
26646663 AGGAAAGCAT
Statistics
Matches: 75, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
50 2 0.03
51 72 0.96
52 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACTTGTGATCAAAGCTATCTTCTTCACAAA
Found at i:26646755 original size:50 final size:51
Alignment explanation
Indices: 26646615--26646757 Score: 146
Period size: 50 Copynumber: 2.8 Consensus size: 51
26646605 GGCTATCTTT
* * * * * * *
26646615 TACACATAGTGGCCTGCACCTAGTACCACACAGGTGATCAAAGCTATCAGG
1 TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCAGG
* * ** *
26646666 -AAAGCATAGTAGCCTACACTTAGTACTACACACCCGACCTAA-CCATCTGG
1 TACA-CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCAGG
*
26646716 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
1 TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA
26646758 AACCTTTTTA
Statistics
Matches: 73, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
50 42 0.58
51 31 0.42
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.22
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAGCCATCAGG
Found at i:26649346 original size:15 final size:15
Alignment explanation
Indices: 26649326--26649355 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26649316 CATTTTATTT
*
26649326 ATATTAGGATAATTA
1 ATATTAAGATAATTA
26649341 ATATTAAGATAATTA
1 ATATTAAGATAATTA
26649356 CTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:26649399 original size:10 final size:10
Alignment explanation
Indices: 26649380--26649411 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
26649370 TTTTAGGATT
26649380 TTAT-TTTAA
1 TTATCTTTAA
26649389 TTATCTTTAA
1 TTATCTTTAA
26649399 TTATCTTTAA
1 TTATCTTTAA
26649409 TTA
1 TTA
26649412 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:26652944 original size:36 final size:36
Alignment explanation
Indices: 26652896--26652965 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
26652886 AGTAGAAAAG
26652896 GGAAAGACAAAATTGAATAGGTAGAATCGGTGTTAC
1 GGAAAGACAAAATTGAATAGGTAGAATCGGTGTTAC
*
26652932 GGAAAGAGAAAATTGAATAGGTAGAATCGGTGTT
1 GGAAAGACAAAATTGAATAGGTAGAATCGGTGTT
26652966 GGGAACCTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.41, C:0.06, G:0.30, T:0.23
Consensus pattern (36 bp):
GGAAAGACAAAATTGAATAGGTAGAATCGGTGTTAC
Found at i:26654520 original size:49 final size:47
Alignment explanation
Indices: 26654457--26654589 Score: 212
Period size: 49 Copynumber: 2.8 Consensus size: 47
26654447 ATTGATGTAC
*
26654457 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
26654504 AAGTATATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
* * *
26654553 AAGTGTATATATGTGATAGGGTCGAGTGACCAACGTG
1 AAGTATATATATGTGATAGGGCCGAGTGGCCAACGTG
26654590 TATATATATG
Statistics
Matches: 80, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
47 34 0.43
49 46 0.57
ACGTcount: A:0.32, C:0.10, G:0.32, T:0.27
Consensus pattern (47 bp):
AAGTATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
Found at i:26654643 original size:49 final size:49
Alignment explanation
Indices: 26654587--26654798 Score: 324
Period size: 49 Copynumber: 4.4 Consensus size: 49
26654577 AGTGACCAAC
26654587 GTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
1 GTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
26654636 GTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
1 GTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
26654685 GTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
1 GTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
* * * * * * * *
26654734 GTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAA
1 GTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
26654781 GTGTATA-A-ATGTGATAAG
1 GTGTATATATATGTGATAAG
26654799 TCCCGAAGGG
Statistics
Matches: 151, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
47 47 0.31
48 1 0.01
49 103 0.68
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAA
Found at i:26654692 original size:130 final size:130
Alignment explanation
Indices: 26654459--26654694 Score: 364
Period size: 130 Copynumber: 1.8 Consensus size: 130
26654449 TGATGTACAA
* *
26654459 GTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGAAAGTATATATATATGTGATA
1 GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGTGATA
* *
26654524 GGGCCGAGTGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGGTCGAGTGACCAACGT
66 AGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGGTCGAGTGACCAACGT
* * * *
26654589 GTATATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATATATGTGATA
1 GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGTGATA
* * * *
26654654 AGGCCTAATGGTCGATGTGATGAATGTGAAAGTGTATATAT
66 AGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATAT
26654695 ATGTGATAAG
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
130 94 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.31
Consensus pattern (130 bp):
GTATATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTATATATATATGTGATA
AGGCCGAATGGCCAACGTGATGAATGTGAAAGTGTATATATGTGATAGGGTCGAGTGACCAACGT
Found at i:26657998 original size:29 final size:26
Alignment explanation
Indices: 26657950--26658015 Score: 64
Period size: 27 Copynumber: 2.5 Consensus size: 26
26657940 GCAACCCAAT
*
26657950 TTTTATTTTTAT-TTTCATTTTAGTTTA
1 TTTTATTTTTTTCTTTCATTTTA--TTA
*
26657977 TTTTATTTTTTTCTTATTATTTTATTA
1 TTTTATTTTTTTCTT-TCATTTTATTA
*
26658004 -TTTATTATTTTC
1 TTTTATTTTTTTC
26658016 AGATATTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 11 0.32
27 14 0.41
28 2 0.06
29 7 0.21
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.76
Consensus pattern (26 bp):
TTTTATTTTTTTCTTTCATTTTATTA
Found at i:26663473 original size:26 final size:26
Alignment explanation
Indices: 26663431--26663479 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
26663421 TCTCTTGGTT
*
26663431 TTCTTTTTCTTTCTTTTTCAAAATTC
1 TTCTTTATCTTTCTTTTTCAAAATTC
26663457 TTCTTTAT-TTTCTTTTTCAAAAT
1 TTCTTTATCTTTCTTTTTCAAAAT
26663480 GGTTTGCCTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.68
26 7 0.32
ACGTcount: A:0.18, C:0.16, G:0.00, T:0.65
Consensus pattern (26 bp):
TTCTTTATCTTTCTTTTTCAAAATTC
Found at i:26664126 original size:21 final size:21
Alignment explanation
Indices: 26664102--26664159 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 21
26664092 TCCCTGGTCT
26664102 ACACAGGCATGTGCCT-CAGTC
1 ACAC-GGCATGTGCCTCCAGTC
* **
26664123 ACACGGTCGTGTGCCTCCCTTC
1 ACACGG-CATGTGCCTCCAGTC
26664145 ACACGGGCATGTGCC
1 ACAC-GGCATGTGCC
26664160 CCTCTTCACA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
20 2 0.07
21 12 0.40
22 14 0.47
23 2 0.07
ACGTcount: A:0.17, C:0.36, G:0.26, T:0.21
Consensus pattern (21 bp):
ACACGGCATGTGCCTCCAGTC
Found at i:26664149 original size:22 final size:22
Alignment explanation
Indices: 26664121--26664169 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
26664111 TGTGCCTCAG
* *
26664121 TCACACGGTCGTGTGCCTCC-CT
1 TCACACGGGCATGTGCC-CCTCT
26664143 TCACACGGGCATGTGCCCCTCT
1 TCACACGGGCATGTGCCCCTCT
26664165 TCACA
1 TCACA
26664170 TGGGTGTTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 2 0.08
22 22 0.92
ACGTcount: A:0.14, C:0.41, G:0.20, T:0.24
Consensus pattern (22 bp):
TCACACGGGCATGTGCCCCTCT
Found at i:26668024 original size:28 final size:28
Alignment explanation
Indices: 26667948--26668015 Score: 118
Period size: 28 Copynumber: 2.4 Consensus size: 28
26667938 ACAGTAAACA
* *
26667948 TGGCAAAGTCACCAGAGCAGTAATTACG
1 TGGCAAAGCCACCAAAGCAGTAATTACG
26667976 TGGCAAAGCCACCAAAGCAGTAATTACG
1 TGGCAAAGCCACCAAAGCAGTAATTACG
26668004 TGGCAAAGCCAC
1 TGGCAAAGCCAC
26668016 TAATACAGTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.37, C:0.25, G:0.24, T:0.15
Consensus pattern (28 bp):
TGGCAAAGCCACCAAAGCAGTAATTACG
Found at i:26672311 original size:8 final size:8
Alignment explanation
Indices: 26672298--26672326 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
26672288 CATCAGGTAC
26672298 TTTAGCGA
1 TTTAGCGA
26672306 TTTAGCGA
1 TTTAGCGA
26672314 TTTAGCGA
1 TTTAGCGA
26672322 TTTAG
1 TTTAG
26672327 TCTATCAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.41
Consensus pattern (8 bp):
TTTAGCGA
Found at i:26674544 original size:27 final size:27
Alignment explanation
Indices: 26674514--26674572 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
26674504 TGTCATGTGA
*
26674514 AATTGAATGGCAAATTAATGTTACATG
1 AATTGAATGGCAAATTAATATTACATG
**
26674541 AATTGAATGTTAAATTAATATTACATG
1 AATTGAATGGCAAATTAATATTACATG
*
26674568 GATTG
1 AATTG
26674573 CATGAGTTGC
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.37
Consensus pattern (27 bp):
AATTGAATGGCAAATTAATATTACATG
Found at i:26675648 original size:27 final size:27
Alignment explanation
Indices: 26675610--26675664 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
26675600 AGATAGAGTT
26675610 AGAATAAGTTTGGAATGCCTTATTCCA
1 AGAATAAGTTTGGAATGCCTTATTCCA
26675637 AGAATAAGTTTGGAATGCCTTATTCCA
1 AGAATAAGTTTGGAATGCCTTATTCCA
26675664 A
1 A
26675665 CTTTAGAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.33
Consensus pattern (27 bp):
AGAATAAGTTTGGAATGCCTTATTCCA
Found at i:26701566 original size:2 final size:2
Alignment explanation
Indices: 26701559--26701585 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26701549 TATTAATGAT
26701559 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
26701586 GTGTAGTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26702168 original size:51 final size:49
Alignment explanation
Indices: 26702019--26702172 Score: 161
Period size: 51 Copynumber: 3.0 Consensus size: 49
26702009 TGATATAAAA
* *
26702019 TTTAAATTTATTATTATATTTTTTAAAAATATTTATGTACTTTTACATAT
1 TTTAAATTTATTATTTTATTTTTTAAAAATATTTATGTA-TTTTATATAT
* * *
26702069 TTTAAATTTAATATATTATTATTTTTATCAACAATATTT-T-T-TTATATATTT
1 TTTAAATTT-AT-TATT-TTATTTTT-T-AAAAATATTTATGTATTTTATATAT
*
26702120 TTTAAATTTATTATTTTATTTATTTGAAAATATTTATGTATTTCTATATAT
1 TTTAAATTTATTATTTTATTT-TTTAAAAATATTTATGTATTT-TATATAT
26702171 TT
1 TT
26702173 CTTTGATTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 19
0.75 0.08 0.17
Matches are distributed among these distances:
47 8 0.09
48 8 0.09
49 7 0.08
50 13 0.15
51 26 0.31
52 4 0.05
53 8 0.09
54 2 0.02
55 9 0.11
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.60
Consensus pattern (49 bp):
TTTAAATTTATTATTTTATTTTTTAAAAATATTTATGTATTTTATATAT
Found at i:26703731 original size:28 final size:28
Alignment explanation
Indices: 26703677--26703736 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 28
26703667 AACTCTTCAA
*
26703677 AATTTTAAAAAATAAAAATAATTTAAAT
1 AATTTTAAAAAATAAAAATAATATAAAT
*
26703705 AATTTTAAAATATATGAAAAAT-ATAAAAAT
1 AATTTTAAAA-A-AT-AAAAATAATATAAAT
26703735 AA
1 AA
26703737 AAAAAATGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 10 0.37
29 1 0.04
30 10 0.37
31 6 0.22
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
AATTTTAAAAAATAAAAATAATATAAAT
Found at i:26704412 original size:14 final size:14
Alignment explanation
Indices: 26704393--26704420 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26704383 TAATATTTTT
26704393 TCTTGAATTTTTGA
1 TCTTGAATTTTTGA
26704407 TCTTGAATTTTTGA
1 TCTTGAATTTTTGA
26704421 AAAATTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.57
Consensus pattern (14 bp):
TCTTGAATTTTTGA
Found at i:26706291 original size:17 final size:19
Alignment explanation
Indices: 26706248--26706294 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 19
26706238 AAAGCCCCCT
*
26706248 AACCTTTTTTTTCAACATGC
1 AACCTTTTTTTT-AACATCC
*
26706268 AAACTTTTTTTT-AC-TCC
1 AACCTTTTTTTTAACATCC
26706285 AACCTTTTTT
1 AACCTTTTTT
26706295 AAAAGTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 11 0.46
18 2 0.08
20 11 0.46
ACGTcount: A:0.23, C:0.23, G:0.02, T:0.51
Consensus pattern (19 bp):
AACCTTTTTTTTAACATCC
Found at i:26707282 original size:33 final size:32
Alignment explanation
Indices: 26707218--26707299 Score: 101
Period size: 33 Copynumber: 2.5 Consensus size: 32
26707208 ATAATAAAAA
* * *
26707218 TAAATTATTTTATATTTTATATATCATTATAT
1 TAAATTATTTAATATTTCATATATCAGTATAT
* *
26707250 TAAATTATTTGAATATTTCATGTATTAGTATAT
1 TAAATTATTT-AATATTTCATATATCAGTATAT
26707283 TAAATTATTTAAATATT
1 TAAATTATTT-AATATT
26707300 ATTTTTCATC
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 10 0.23
33 33 0.77
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (32 bp):
TAAATTATTTAATATTTCATATATCAGTATAT
Found at i:26708821 original size:77 final size:78
Alignment explanation
Indices: 26708695--26709111 Score: 513
Period size: 78 Copynumber: 5.3 Consensus size: 78
26708685 GAAAATTAAA
* * * *
26708695 AGTAAAATAAAAATCGTTTCGGGATTGGTTC-CTGCCATTTAACGATTTTATTCCAAAATTGTTT
1 AGTAAAATAAAAATCGTTTCGGGATTGATTCTC-GCCGTTCAACGATTTTATTCCAAATTTGTTT
* *
26708759 TATTTCTAAAAACA
65 TATTTCCAAAAACG
* * * *
26708773 AGTAAAAT-AAATTTGTTTCGGGATCGATTCTCGCCGTTCAACGGTTTTATTCCAAATTTGTTTT
1 AGTAAAATAAAAATCGTTTCGGGATTGATTCTCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
26708837 ATTTCCAAAAAACG
66 ATTTCC-AAAAACG
* * *
26708851 AGTAAAAT-AAAATAGTTTCGGGATTGACTC-CTGCCGTTCAATGATTTTATTCCAAATTTGTTT
1 AGTAAAATAAAAATCGTTTCGGGATTGATTCTC-GCCGTTCAACGATTTTATTCCAAATTTGTTT
* *
26708914 AATTTTC-AAAACG
65 TATTTCCAAAAACG
*
26708927 AGTAAAATAAAAAATCGTTTCGGGATTGATTCTCACCGTTCAACGATTTTATTCCAAATTTGTTT
1 AGTAAAAT-AAAAATCGTTTCGGGATTGATTCTCGCCGTTCAACGATTTTATTCCAAATTTGTTT
* *
26708992 TATTTCCAAACATG
65 TATTTCCAAAAACG
* * * * *
26709006 AGAAAAATAAAAAAATCATTTCGGGATTGATTTTCGCTGTTCAACGATTTTATTCAAAATTTGTT
1 AGTAAAAT--AAAAATCGTTTCGGGATTGATTCTCGCCGTTCAACGATTTTATTCCAAATTTGTT
26709071 TTATTTCCAAAAACG
64 TTATTTCCAAAAACG
*
26709086 AGTAACAT-AAAATCCGTTTCGGGATT
1 AGTAAAATAAAAAT-CGTTTCGGGATT
26709112 TATTTACTGT
Statistics
Matches: 293, Mismatches: 37, Indels: 18
0.84 0.11 0.05
Matches are distributed among these distances:
76 14 0.05
77 57 0.19
78 140 0.48
79 12 0.04
80 70 0.24
ACGTcount: A:0.34, C:0.15, G:0.14, T:0.38
Consensus pattern (78 bp):
AGTAAAATAAAAATCGTTTCGGGATTGATTCTCGCCGTTCAACGATTTTATTCCAAATTTGTTTT
ATTTCCAAAAACG
Found at i:26709237 original size:236 final size:233
Alignment explanation
Indices: 26708788--26709216 Score: 492
Period size: 236 Copynumber: 1.8 Consensus size: 233
26708778 AATAAATTTG
* *
26708788 TTTCGGGATCGATTCTCGCCGTTCAACGGTTTTATTCCAAATTTGTTTTATTTCCAAAAAACGAG
1 TTTCGGGATCGATTCTCGCCGTTCAACGATTTTATTCAAAATTTGTTTTATTTCCAAAAAACGAG
* *
26708853 TAAAATAAAATAGTTTCGGGATTGACTCCTGCCGTTCAATGATTTTATTCCAAATTTGTTTAATT
66 TAAAATAAAATAGTTTCGGGATTGACTACTGCCGTTCAATGATTTTATT-C-AATTTGTTT-AGT
* * * *
26708918 TTCAAAACGAGTAAAATAAAAAATCGTTTCGGGATTGATTCTCACCGTTCAACGATTTTATTCCA
128 TGCAAAACGAGTAAAATAAAAAATCATTTCAGAATTGATTCTCACCGTTCAACGATTTTATTCCA
*
26708983 AATTTGTTTTATTTCCAAACATGAGAAAAATAAAAAAATCA
193 AATTTATTTTATTTCCAAACATGAGAAAAATAAAAAAATCA
* * *
26709024 TTTCGGGATTGATTTTCGCTGTTCAACGATTTTATTCAAAATTTGTTTTATTTCC-AAAAACGAG
1 TTTCGGGATCGATTCTCGCCGTTCAACGATTTTATTCAAAATTTGTTTTATTTCCAAAAAACGAG
* * * * * *
26709088 TAACATAAAATCCGTTTCGGGATTTATTTACTGTCGTTCAATGGA-TTTATT-ACTTT-TTT-GT
66 TAAAATAAAAT-AGTTTCGGGATTGA-CTACTGCCGTTCAAT-GATTTTATTCAATTTGTTTAGT
* * * * *
26709149 TGCAAAAAACGAG-AAATTAAATAAAATATATTTCAGAATTTATTCTCGCCGTTTAACAAGATTT
128 TGC--AAAACGAGTAAAAT-AA-AAAAT-CATTTCAGAATTGATTCTCACCGTTCAAC--GATTT
26709213 TATT
186 TATT
26709217 TGATTTTATT
Statistics
Matches: 161, Mismatches: 22, Indels: 19
0.80 0.11 0.09
Matches are distributed among these distances:
231 3 0.02
232 4 0.02
233 13 0.08
234 9 0.06
235 41 0.25
236 62 0.39
237 27 0.17
238 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.39
Consensus pattern (233 bp):
TTTCGGGATCGATTCTCGCCGTTCAACGATTTTATTCAAAATTTGTTTTATTTCCAAAAAACGAG
TAAAATAAAATAGTTTCGGGATTGACTACTGCCGTTCAATGATTTTATTCAATTTGTTTAGTTGC
AAAACGAGTAAAATAAAAAATCATTTCAGAATTGATTCTCACCGTTCAACGATTTTATTCCAAAT
TTATTTTATTTCCAAACATGAGAAAAATAAAAAAATCA
Found at i:26709300 original size:85 final size:85
Alignment explanation
Indices: 26709162--26709406 Score: 325
Period size: 85 Copynumber: 2.9 Consensus size: 85
26709152 AAAAAACGAG
*
26709162 AAATTAAATAAAATATATTTC-AGAATTTATTCTCGCCGTTTAACAAGATTTTATTTGATTTTAT
1 AAATTAAATAAAATATATTTCGAG-ATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTAT
*
26709226 TTTGTTTCCAAAA-TCAAAATT
65 TTTGTTTCCAAAATTC-AAACT
* * *
26709247 AAATTAAATAAAATCTATTTCGAGATTTATTCCCGCCGTTTAATAATATTTTATTTGATTTTATT
1 AAATTAAATAAAATATATTTCGAGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATT
*
26709312 TTGTTT-CAAAATTCGAACT
66 TTGTTTCCAAAATTCAAACT
* * * * ** * *
26709331 AAATTAAATAAAATTTGTTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTCAATATTGTT
1 AAATTAAATAAAATATATTTCGAGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATT
26709396 TTGTTTCCAAA
66 TTGTTTCCAAA
26709407 CAAAGACATA
Statistics
Matches: 141, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
84 69 0.49
85 70 0.50
86 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.45
Consensus pattern (85 bp):
AAATTAAATAAAATATATTTCGAGATTTATTCCCGCCGTTTAACAAGATTTTATTTGATTTTATT
TTGTTTCCAAAATTCAAACT
Found at i:26709424 original size:84 final size:84
Alignment explanation
Indices: 26709162--26709474 Score: 302
Period size: 84 Copynumber: 3.7 Consensus size: 84
26709152 AAAAAACGAG
* * *
26709162 AAATTAAATAAAATATATTTCAGAATTTATT-CTCGCCGTTTAACAAGATTTTATTTGATTTTAT
1 AAATTAAATAAAATTTATTTCGGGATTTATTCCT-GCCGTTTAACAAGATTTTATTTGATTTTAT
*
26709226 TTTGTTTCCAAAATCAAA-ATT
65 TTTGTTTCC-AAA-CAAAGAAT
* * * * *
26709247 AAATTAAATAAAATCTATTTCGAGATTTATTCCCGCCGTTTAATAATATTTTATTTGATTTTATT
1 AAATTAAATAAAATTTATTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTGATTTTATT
**
26709312 TTGTTT-CAAA-ATTCGAACT
66 TTGTTTCCAAACA-AAGAA-T
* ** * *
26709331 AAATTAAATAAAATTTGTTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTCAATATTGTT
1 AAATTAAATAAAATTTATTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTGATTTTATT
26709396 TTGTTTCCAAACAAAGACAT
66 TTGTTTCCAAACAAAGA-AT
* * * *
26709416 -AATCAAAT--AATTCTACTTT-GGGATTTATTCATGTCGTTTAA-TAGATTTTATTTTGATTT
1 AAATTAAATAAAATT-TA-TTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTA-TTTGATTT
26709475 AATGATATAA
Statistics
Matches: 188, Mismatches: 30, Indels: 22
0.78 0.12 0.09
Matches are distributed among these distances:
81 1 0.01
82 12 0.06
83 30 0.16
84 73 0.39
85 69 0.37
86 3 0.02
ACGTcount: A:0.34, C:0.11, G:0.10, T:0.45
Consensus pattern (84 bp):
AAATTAAATAAAATTTATTTCGGGATTTATTCCTGCCGTTTAACAAGATTTTATTTGATTTTATT
TTGTTTCCAAACAAAGAAT
Found at i:26715181 original size:46 final size:46
Alignment explanation
Indices: 26715131--26715352 Score: 299
Period size: 46 Copynumber: 4.8 Consensus size: 46
26715121 TGGTTGAGCA
26715131 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
26715177 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* *
26715223 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAA-T--G
* * *
26715268 CATCCGAACTCGTAGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
* * *
26715316 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26715353 GCGAGTTACA
Statistics
Matches: 156, Mismatches: 11, Indels: 18
0.84 0.06 0.10
Matches are distributed among these distances:
42 2 0.01
43 6 0.04
45 3 0.02
46 108 0.69
47 28 0.18
48 3 0.02
50 4 0.03
51 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATG
Found at i:26715300 original size:93 final size:90
Alignment explanation
Indices: 26715131--26715345 Score: 290
Period size: 93 Copynumber: 2.3 Consensus size: 90
26715121 TGGTTGAGCA
* * *
26715131 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAATGTCCGAACTCGTTGAGTTGA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GGATGTGAATGTCCGAACTCGTAGAGTTGA
* *
26715196 GTCCGAGTTCACTTATGGATGTGAATG
64 GTCCGAGTTCACTTATGGATGCGAACG
26715223 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGA-GATGT-AACTAGGCATCCGAACTCGTAGAGT
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGTGAA-T--G--TCCGAACTCGTAGAGT
26715286 TGAGTCCGAGTTCACTTATGGATGCGAACG
61 TGAGTCCGAGTTCACTTATGGATGCGAACG
* *
26715316 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCG
26715346 CTTATGGGCG
Statistics
Matches: 111, Mismatches: 7, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
88 2 0.02
89 6 0.05
91 3 0.03
92 29 0.26
93 71 0.64
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.29
Consensus pattern (90 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGGATGTGAATGTCCGAACTCGTAGAGTTGAGT
CCGAGTTCACTTATGGATGCGAACG
Found at i:26719950 original size:24 final size:20
Alignment explanation
Indices: 26719894--26719934 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26719884 AATTGACTTG
* *
26719894 AGTCTACTTTCCATGAACAT
1 AGTCTGCTTTCCACGAACAT
26719914 AGTCTGCTTTCCACGAACAT
1 AGTCTGCTTTCCACGAACAT
26719934 A
1 A
26719935 ATGCTCTGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (20 bp):
AGTCTGCTTTCCACGAACAT
Found at i:26748370 original size:17 final size:17
Alignment explanation
Indices: 26748350--26748384 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
26748340 TATATGTGTC
26748350 ATTTGATTTGCCAAATG
1 ATTTGATTTGCCAAATG
26748367 ATTTGATTTGCCAAATG
1 ATTTGATTTGCCAAATG
26748384 A
1 A
26748385 AGGCATGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.40
Consensus pattern (17 bp):
ATTTGATTTGCCAAATG
Found at i:26758413 original size:27 final size:27
Alignment explanation
Indices: 26758382--26758559 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26758372 TAAATTGTAC
26758382 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26758409 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26758435 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26758463 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26758491 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26758518 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26758545 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26758560 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26758496 original size:82 final size:81
Alignment explanation
Indices: 26758383--26758538 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26758373 AAATTGTACA
* *
26758383 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26758447 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26758464 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26758529 TGCGAGTTGA
65 TGCGAATTGA
26758539 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26758550 original size:82 final size:81
Alignment explanation
Indices: 26758379--26758559 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26758369 GATTAAATTG
* *
26758379 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26758444 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26758460 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26758524 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26758542 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26758560 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26762496 original size:20 final size:20
Alignment explanation
Indices: 26762473--26762510 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
26762463 CCTTAGTAAG
26762473 ATGTTTGATTAAGTAAAACC
1 ATGTTTGATTAAGTAAAACC
26762493 ATGTTTGATTAAGTAAAA
1 ATGTTTGATTAAGTAAAA
26762511 TCGTGACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.05, G:0.16, T:0.37
Consensus pattern (20 bp):
ATGTTTGATTAAGTAAAACC
Found at i:26771449 original size:129 final size:128
Alignment explanation
Indices: 26771299--26771552 Score: 393
Period size: 129 Copynumber: 2.0 Consensus size: 128
26771289 AAGCCCATAA
* *
26771299 TAATACTCTACTAAGGACCTTTTAAGAATAATCATATTATTCTCAGGACATTATTATAAAATAAT
1 TAATACTCGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAAGACATTATTATAAAATAAT
** *
26771364 TTATTTATATATTCAGAAAAGAAACTGAAATAATAATGATAATG-CTTTATATTAACAAACGAGG
66 TTATTTATATACCCAAAAAAGAAACTGAAAT-ATAATGATAATGTC-TTATATTAACAAACGAGG
* * * *
26771428 TAATACTCGACTAAGGGCCTTTTAAGAATAATTATATTATTCTCAAGATATTATTATAAAATAGT
1 TAATACTCGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAAGACATTATTATAAAATAAT
*
26771493 TTATTTATGTACCCAAAAAAGAAACTGAAATATAATGATAATGTCTTATATTAACAAACG
66 TTATTTATATACCCAAAAAAGAAACTGAAATATAATGATAATGTCTTATATTAACAAACG
26771553 GGGCAAAACA
Statistics
Matches: 114, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
128 27 0.24
129 87 0.76
ACGTcount: A:0.44, C:0.11, G:0.10, T:0.35
Consensus pattern (128 bp):
TAATACTCGACTAAGGACCTTTTAAGAATAATCATATTATTCTCAAGACATTATTATAAAATAAT
TTATTTATATACCCAAAAAAGAAACTGAAATATAATGATAATGTCTTATATTAACAAACGAGG
Found at i:26771847 original size:32 final size:32
Alignment explanation
Indices: 26771805--26771866 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
26771795 AGGGTATGAT
26771805 AGTTTAAGATCAAATTCT-GAGAAACTAAGGAC
1 AGTTTAAGATCAAATT-TGGAGAAACTAAGGAC
*
26771837 AGTTTGAGATCAAATTTGGAGAAACTAAGG
1 AGTTTAAGATCAAATTTGGAGAAACTAAGG
26771867 CTTTTGCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
31 1 0.04
32 27 0.96
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.26
Consensus pattern (32 bp):
AGTTTAAGATCAAATTTGGAGAAACTAAGGAC
Found at i:26775486 original size:44 final size:44
Alignment explanation
Indices: 26775431--26775518 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
26775421 GATGAATAGC
*
26775431 TAATTCGGTTTGTGCTCTCATAATTCAAGTTCATTAAATAAATA
1 TAATTCAGTTTGTGCTCTCATAATTCAAGTTCATTAAATAAATA
*
26775475 TAATTCAGTTTGTGCTCTCATAATTCAAGTTCGTTAAATAAATA
1 TAATTCAGTTTGTGCTCTCATAATTCAAGTTCATTAAATAAATA
26775519 AACATATATG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.34, C:0.14, G:0.11, T:0.41
Consensus pattern (44 bp):
TAATTCAGTTTGTGCTCTCATAATTCAAGTTCATTAAATAAATA
Found at i:26781413 original size:95 final size:95
Alignment explanation
Indices: 26781257--26781435 Score: 340
Period size: 95 Copynumber: 1.9 Consensus size: 95
26781247 ATGAGTCTGA
*
26781257 AGTAATATTCCAAATATAAGTACCCGATAAGCAAGAGTGTATGCATTAGTGATCTTTCTCTTCTC
1 AGTAATATTCCAAATATAAGTACCCGATAAGCAAGAGAGTATGCATTAGTGATCTTTCTCTTCTC
26781322 TAATTCCTCTATTATCAAAGATTAGTCTAG
66 TAATTCCTCTATTATCAAAGATTAGTCTAG
*
26781352 AGTAATATTCCAAATATAAGTACCTGATAAGCAAGAGAGTATGCATTAGTGATCTTTCTCTTCTC
1 AGTAATATTCCAAATATAAGTACCCGATAAGCAAGAGAGTATGCATTAGTGATCTTTCTCTTCTC
26781417 TAATTCCTCTATTATCAAA
66 TAATTCCTCTATTATCAAA
26781436 TCCACACATT
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 82 1.00
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.36
Consensus pattern (95 bp):
AGTAATATTCCAAATATAAGTACCCGATAAGCAAGAGAGTATGCATTAGTGATCTTTCTCTTCTC
TAATTCCTCTATTATCAAAGATTAGTCTAG
Found at i:26796719 original size:21 final size:21
Alignment explanation
Indices: 26796693--26796737 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
26796683 CAATTAACCT
26796693 ATTACTAGGGGTATGATGGTC
1 ATTACTAGGGGTATGATGGTC
26796714 ATTACTAGGGGTATGATGGTC
1 ATTACTAGGGGTATGATGGTC
26796735 ATT
1 ATT
26796738 TCGTCGATTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.24, C:0.09, G:0.31, T:0.36
Consensus pattern (21 bp):
ATTACTAGGGGTATGATGGTC
Found at i:26799712 original size:21 final size:22
Alignment explanation
Indices: 26799660--26799712 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
26799650 AAATAAAGTC
*
26799660 CATGTA-CAAATATCATCATCT
1 CATGTATCATATATCATCATCT
* *
26799681 CATGTTTTCATATATCAT-ATGT
1 CATG-TATCATATATCATCATCT
26799703 CATGTATCAT
1 CATGTATCAT
26799713 CACTTGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 9 0.35
22 8 0.31
23 9 0.35
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.42
Consensus pattern (22 bp):
CATGTATCATATATCATCATCT
Found at i:26800292 original size:17 final size:17
Alignment explanation
Indices: 26800246--26800294 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
26800236 ATTAACATTT
26800246 TTATCATTTATCGGGCA
1 TTATCATTTATCGGGCA
* *
26800263 TTATAATTGATCGGGCA
1 TTATCATTTATCGGGCA
26800280 CTT-TCATTTATCGGG
1 -TTATCATTTATCGGG
26800295 ATTTTTCGAG
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.41
Consensus pattern (17 bp):
TTATCATTTATCGGGCA
Found at i:26801116 original size:43 final size:43
Alignment explanation
Indices: 26801069--26801156 Score: 160
Period size: 43 Copynumber: 2.0 Consensus size: 43
26801059 CTCCTGTTTA
26801069 CTACAAATTCTGAGGCTTCATGACTTGGAAAA-TTTAAAACTTT
1 CTACAAATTCTGAGGCTTCATGACTT-GAAAATTTTAAAACTTT
26801112 CTACAAATTCTGAGGCTTCATGACTTGAAAATTTTAAAACTTT
1 CTACAAATTCTGAGGCTTCATGACTTGAAAATTTTAAAACTTT
26801155 CT
1 CT
26801157 TAAATCATCA
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 5 0.11
43 39 0.89
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.36
Consensus pattern (43 bp):
CTACAAATTCTGAGGCTTCATGACTTGAAAATTTTAAAACTTT
Found at i:26801466 original size:28 final size:27
Alignment explanation
Indices: 26801430--26801486 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 27
26801420 TACAGCGGTT
*
26801430 TTCATACGG-CTGGCACACACTCGTGTCC
1 TTCACACGGCCTGGCACAC-C-CGTGTCC
26801458 TTCACACGGCCCTGGCACACCCGTGTCC
1 TTCACACGG-CCTGGCACACCCGTGTCC
26801486 T
1 T
26801487 AGCCCGTATG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 16 0.62
29 1 0.04
30 9 0.35
ACGTcount: A:0.16, C:0.40, G:0.21, T:0.23
Consensus pattern (27 bp):
TTCACACGGCCTGGCACACCCGTGTCC
Found at i:26802660 original size:44 final size:44
Alignment explanation
Indices: 26802592--26802680 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
26802582 GATCTGAATC
* *
26802592 ACTCTTTCAGACTGACCATTGGTTTGCGGGTGAAATGCCATGCT
1 ACTCTTTCAGACTGAACATCGGTTTGCGGGTGAAATGCCATGCT
* * *
26802636 ACTCTTTCCGACTGAACGTCGGTTTGCGGGTGAAATGCCGTGCT
1 ACTCTTTCAGACTGAACATCGGTTTGCGGGTGAAATGCCATGCT
26802680 A
1 A
26802681 AAACTCAACT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.19, C:0.24, G:0.27, T:0.30
Consensus pattern (44 bp):
ACTCTTTCAGACTGAACATCGGTTTGCGGGTGAAATGCCATGCT
Found at i:26819968 original size:55 final size:55
Alignment explanation
Indices: 26819887--26820023 Score: 166
Period size: 55 Copynumber: 2.5 Consensus size: 55
26819877 CACAGCCATG
* ** * *
26819887 CGAACCTGCCAAAACAACATGGGCGTGCGACACGCTGGTGCCTAGAAACCATGGC
1 CGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGACAAGAAACCATGGC
* * ** * * *
26819942 CGAACTTGTCAAATTAACACGGGCGTGCGGCACGCCCGTGACAAGAAACCGTGGG
1 CGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGACAAGAAACCATGGC
26819997 CGAACCTGCCAAAACAACACGGGCGTG
1 CGAACCTGCCAAAACAACACGGGCGTG
26820024 GGCCTACATA
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 66 1.00
ACGTcount: A:0.29, C:0.30, G:0.28, T:0.12
Consensus pattern (55 bp):
CGAACCTGCCAAAACAACACGGGCGTGCGACACGCCCGTGACAAGAAACCATGGC
Found at i:26823097 original size:29 final size:29
Alignment explanation
Indices: 26823034--26823110 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 29
26823024 TATATAGTGG
* *
26823034 GTTCACACACTTAGTGCCATGTACTTTAA
1 GTTCGCACACTTAGTGCCATGCACTTTAA
** *
26823063 ACTCGCACACTTAATGCCATGCA-TTTCAA
1 GTTCGCACACTTAGTGCCATGCACTTT-AA
*
26823092 GTTCGCACACCTAGTGCCA
1 GTTCGCACACTTAGTGCCA
26823111 ATCTCACAAC
Statistics
Matches: 38, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
28 3 0.08
29 35 0.92
ACGTcount: A:0.27, C:0.30, G:0.14, T:0.29
Consensus pattern (29 bp):
GTTCGCACACTTAGTGCCATGCACTTTAA
Found at i:26825411 original size:94 final size:94
Alignment explanation
Indices: 26825250--26825423 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 94
26825240 TGATTTGTGT
* *
26825250 GCCAGTGTAAGACCATGTCTGGGACATGGAATCGGCATCCAGACGAGGGCTACTGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTGGAACATGGAATCGGCATCCAGACGAGGGCTACAGTAAGACATGT
*
26825315 CTGAGATATGCATCAACCATATTATGAGA
66 CTGAGACATGCATCAACCATATTATGAGA
* * * * *
26825344 GCCAGTGTAAGACCATGTCTGGAACAT-GACATCGGTA-CAGAGATGAGTGCTAGAGTAAGACAT
1 GCCAGTGTAAGACCATGTCTGGAACATGGA-ATCGGCATC-CAGACGAGGGCTACAGTAAGACAT
*
26825407 GTCTGGGACATGCATCA
64 GTCTGAGACATGCATCA
26825424 GCCTCGACAG
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
93 3 0.04
94 66 0.96
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.22
Consensus pattern (94 bp):
GCCAGTGTAAGACCATGTCTGGAACATGGAATCGGCATCCAGACGAGGGCTACAGTAAGACATGT
CTGAGACATGCATCAACCATATTATGAGA
Found at i:26825513 original size:44 final size:47
Alignment explanation
Indices: 26825347--26825556 Score: 157
Period size: 47 Copynumber: 4.5 Consensus size: 47
26825337 TATGAGAGCC
* *
26825347 AGTGTAAGACCATGTCTGGAACATGACATC-GGT--ACAGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCAGCTCGACAGAGAT--GTGCT
* * *
26825395 AGAGTAAGACATGTCTGGGACATGCATCAGCCTCGACAGAGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CTCGACAGAGATGTGCT
* * * * *
26825442 AGTGCAAGACGTGTTTGGGACACGCATCAGC-C-A-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTCGACAGAGATGTGCT
* * * * *
26825486 AGTGTAAGACATGTCTAGGACATGCATCAGCACG-CATATATGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCTCGACAGAGAT--GTGCT
26825534 AGTGTAAGACTATGTCTGGGACA
1 AGTGTAAGAC-ATGTCTGGGACA
26825557 CGGCATTGGT
Statistics
Matches: 128, Mismatches: 23, Indels: 21
0.74 0.13 0.12
Matches are distributed among these distances:
43 5 0.04
44 29 0.23
45 2 0.02
46 8 0.06
47 42 0.33
48 23 0.18
49 11 0.09
50 8 0.06
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCTCGACAGAGATGTGCT
Found at i:26830597 original size:40 final size:40
Alignment explanation
Indices: 26830537--26830655 Score: 177
Period size: 40 Copynumber: 3.0 Consensus size: 40
26830527 GCTTTAACCG
* *
26830537 GATATAGCCACTCGCTCAAATGCCTTCGGGACTTAGCCCA
1 GATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCA
* *
26830577 GATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
1 GATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCA
*
26830617 GA-ATTAGTCACTAGCACAAATGCCTTCGGGACTTAGCCC
1 GATA-TAGTCACTCGCACAAATGCCTTCGGGACTTAGCCC
26830656 GGTTATCATC
Statistics
Matches: 72, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
39 1 0.01
40 71 0.99
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
GATATAGTCACTCGCACAAATGCCTTCGGGACTTAGCCCA
Found at i:26836383 original size:93 final size:94
Alignment explanation
Indices: 26836232--26836545 Score: 308
Period size: 93 Copynumber: 3.4 Consensus size: 94
26836222 TGATTTGTGC
* * * * *
26836232 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACA-AGGGCTAGTGTAAGACATG
1 GCCAGTGTAAGACCATGTCTAGGACACGACATCGGCAT--AGAGATAGTGCTAGTGTAAGACATG
26836296 TCAGGGACATGCATCAGCCAT-ATTATAAGA
64 TCAGGGACATGCATCAGCCATCATTATAAGA
* * *
26836326 GCCAGTGTAAGACCAT-TCTAGGACATGACATCAGCATAGAGATGAGTGCTAGAGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTAGGACACGACATCGGCATAGAGAT-AGTGCTAGTGTAAGACATGT
* * * *
26836390 CTA-GGACATGCATCGGCC-TCGA-CAGAGATA
65 C-AGGGACATGCATCAGCCATC-ATTATA-AGA
* * *
26836420 GCCAGTGTAAGA-CGTGTCTGGGACACG-CATCGGTCA-AGAG-TTGTGCTAGTGTAAGACATGT
1 GCCAGTGTAAGACCATGTCTAGGACACGACATCGG-CATAGAGATAGTGCTAGTGTAAGACATGT
* *
26836481 CTGGGACATGCATCAG-CATGCATATATGAGA
65 CAGGGACATGCATCAGCCAT-CAT-TATAAGA
*
26836512 GCCAGTGTAAGACTATGTCTAGGACACGACATCG
1 GCCAGTGTAAGACCATGTCTAGGACACGACATCG
26836546 ACAATTTATC
Statistics
Matches: 180, Mismatches: 25, Indels: 30
0.77 0.11 0.13
Matches are distributed among these distances:
90 1 0.01
91 37 0.21
92 17 0.09
93 77 0.43
94 48 0.27
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.21
Consensus pattern (94 bp):
GCCAGTGTAAGACCATGTCTAGGACACGACATCGGCATAGAGATAGTGCTAGTGTAAGACATGTC
AGGGACATGCATCAGCCATCATTATAAGA
Found at i:26836430 original size:47 final size:47
Alignment explanation
Indices: 26836232--26836537 Score: 165
Period size: 47 Copynumber: 6.5 Consensus size: 47
26836222 TGATTTGTGC
* * *
26836232 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGACA-AG--G
1 GCCAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCAT-C-GACAGAGATA
* * * *
26836280 GCTAGTGTAAGACATGTC-AGGGACATGCATCAGCCAT--ATTATA-AGA
1 GCCAGTGTAAGACATGTCTA-GGACATGCATCAG-CATCGA-CAGAGATA
* *
26836326 GCCAGTGTAAGACCAT-TCTAGGACATGACATCAGCATAGAGATGAG-T-
1 GCCAGTGTAAGA-CATGTCTAGGACATG-CATCAGCATCGACA-GAGATA
* * * *
26836373 GCTAGAGTAAGACATGTCTAGGACATGCATCGGCCTCGACAGAGATA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCGACAGAGATA
* * * * * *
26836420 GCCAGTGTAAGACGTGTCTGGGACACGCATC-G-GTC-A-AGAGTTGT
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCGACAGAGAT-A
* * * * *
26836464 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCAT-GCATATATGAGA
1 GCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCG-ACAGA-GATA
26836512 GCCAGTGTAAGACTATGTCTAGGACA
1 GCCAGTGTAAGAC-ATGTCTAGGACA
26836538 CGACATCGAC
Statistics
Matches: 201, Mismatches: 33, Indels: 47
0.72 0.12 0.17
Matches are distributed among these distances:
43 6 0.03
44 30 0.15
45 7 0.03
46 45 0.22
47 74 0.37
48 27 0.13
49 12 0.06
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
GCCAGTGTAAGACATGTCTAGGACATGCATCAGCATCGACAGAGATA
Found at i:26836484 original size:44 final size:47
Alignment explanation
Indices: 26836235--26836494 Score: 166
Period size: 47 Copynumber: 5.6 Consensus size: 47
26836225 TTTGTGCGCC
* * *
26836235 AGTGTAAGACCATGTCTGGGACATGGCATCGGCATC--CAGACAAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-TCGACAGAGATGTGCT
* * * * * * * *
26836283 AGTGTAAGACATGTCAGGGACATGCATCAGC-C-ATATTATAAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGACA-GAGATGTGCT
* * *
26836329 AGTGTAAGACCAT-TCTAGGACATGACATCAG--C-ATAGAGATGAGTGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCTCGACAGAGAT--GTGCT
* * * *
26836376 AGAGTAAGACATGTCTAGGACATGCATCGGCCTCGACAGAGAT-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGG-CTCGACAGAGATGTGCT
* * *
26836423 AGTGTAAGACGTGTCTGGGACACGCATCGG-TC-A-AGAGTTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTCGACAGAGATGTGCT
26836467 AGTGTAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
26836495 AGCATGCATA
Statistics
Matches: 172, Mismatches: 28, Indels: 28
0.75 0.12 0.12
Matches are distributed among these distances:
43 5 0.03
44 30 0.17
45 5 0.03
46 43 0.25
47 72 0.42
48 9 0.05
49 1 0.01
50 7 0.04
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTCGACAGAGATGTGCT
Found at i:26842026 original size:40 final size:40
Alignment explanation
Indices: 26841902--26842126 Score: 245
Period size: 40 Copynumber: 5.6 Consensus size: 40
26841892 TATTCGAATG
* * *
26841902 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTA-GTGACT
* * ** * * *
26841943 ATAACCGGACTAAGATTCGAAGGCATTCGTACGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGACT
* *
26841983 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* *
26842023 ATATCCGGGCTAAAACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
26842063 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
* * *
26842103 ACATCCGAGCTAAGATCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGC
26842127 CTTGTGCAAG
Statistics
Matches: 152, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
39 1 0.01
40 125 0.82
41 26 0.17
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGACT
Found at i:26842109 original size:80 final size:80
Alignment explanation
Indices: 26841902--26842162 Score: 267
Period size: 80 Copynumber: 3.3 Consensus size: 80
26841892 TATTCGAATG
* * * * *
26841902 ATATCCGGGCTAAGTCCCAAAGGCTTTTGTGCTAGGTGACTATAACCGGACTAAGATTCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACTATATCCGGGCTAAGATCCGAAGGC
*
26841967 ATTCGTACGAGTTGCT
65 ATTCGTACGAGTCGCT
* * * * *
26841983 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGATTATATCCGGGCTAAAACCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGATCCGAAGGCA
* * *
26842048 TTTGTGCTAG-CGACT
66 TTCGTACGAGTCG-CT
* * * * *
26842063 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCACATCCGAGCTAAGATCCGAAGGCC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGATCCGAAGGCA
* * * *
26842128 TT-GTGCAAGTAGTT
66 TTCGTACGAGTCGCT
*
26842142 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
26842163 ATTACTTGAG
Statistics
Matches: 150, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
78 14 0.09
79 14 0.09
80 91 0.61
81 31 0.21
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGATCCGAAGGCA
TTCGTACGAGTCGCT
Found at i:26848246 original size:46 final size:47
Alignment explanation
Indices: 26847976--26848246 Score: 206
Period size: 47 Copynumber: 5.8 Consensus size: 47
26847966 TAGGGAAGGT
*
26847976 GCCGATGCCATGTCCTAGACATGGTCTTACACTAG--CTCATATCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCT--A
* * * *
26848023 GTCGATGCCATGTCCCAAACATGGTCTTACACT-GACTATCATCTCGTA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTCTCATATC-TA
* * *
26848071 GCCAATG-CATGTCCCATG-CAT-GTCTTACACTAGCT-T-ATGTCTC
1 GCCGATGCCATGTCCCA-GACATGGTCTTACACTAGCTCTCATATCTA
* * * * * * *
26848114 GACGCTGACGCATCTCTCAGACAT-GTCTTACACTAGCCCTCGTCT-TAA
1 GCCGATG-C-CATGTCCCAGACATGGTCTTACACTAGCTCTCATATCT-A
* * *
26848162 TGCTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCTA
26848211 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC
26848247 ATACACGAAT
Statistics
Matches: 178, Mismatches: 29, Indels: 35
0.74 0.12 0.14
Matches are distributed among these distances:
43 5 0.03
44 4 0.02
45 2 0.01
46 51 0.29
47 71 0.40
48 32 0.18
49 11 0.06
50 2 0.01
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCTA
Found at i:26856078 original size:46 final size:46
Alignment explanation
Indices: 26856025--26856246 Score: 288
Period size: 46 Copynumber: 4.8 Consensus size: 46
26856015 TATTTGGGCA
26856025 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
26856071 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*** * *
26856117 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
26856164 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
26856210 CCCGAGCTTGTTGAGTTGAGTTCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26856247 GCGGGTTACA
Statistics
Matches: 154, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.01
44 2 0.01
45 1 0.01
46 113 0.73
47 32 0.21
48 1 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:26858266 original size:47 final size:47
Alignment explanation
Indices: 26858208--26858327 Score: 231
Period size: 47 Copynumber: 2.6 Consensus size: 47
26858198 ATCCATAAGT
*
26858208 GAACTCGGACTCAACTCAACGTGTTCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
26858255 GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
26858302 GAACTCGGACTCAACTCAACGAGTTC
1 GAACTCGGACTCAACTCAACGAGTTC
26858328 GGAACTTAAA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 72 1.00
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.23
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
Done.