Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 84 of 322
Found at i:26858801 original size:9 final size:9
Alignment explanation
Indices: 26858789--26858816 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
26858779 CCTAAATAGG
26858789 ATTCAAATT
1 ATTCAAATT
26858798 ATTCAAATT
1 ATTCAAATT
26858807 ATTCAAATT
1 ATTCAAATT
26858816 A
1 A
26858817 ACCCAAAATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (9 bp):
ATTCAAATT
Found at i:26860554 original size:40 final size:40
Alignment explanation
Indices: 26860473--26860726 Score: 331
Period size: 40 Copynumber: 6.4 Consensus size: 40
26860463 CAACCAAGTA
** *
26860473 CCTTCGGGGTTTAG-CCGGATATAGCT-ACT-GCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
26860511 CCTTCGAGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26860551 CCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAAC-TCGCACAAATG
*
26860591 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
26860631 CCTTCGGGACTTAGCCCGGATATAATAACTCGCATAATTG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
26860671 CCTTCGGG-CTTAGCCCGGA-ATTAGTCACTTGCACAGATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
26860710 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
26860727 AGTTATCATC
Statistics
Matches: 193, Mismatches: 16, Indels: 12
0.87 0.07 0.05
Matches are distributed among these distances:
38 13 0.07
39 45 0.23
40 133 0.69
41 2 0.01
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26862503 original size:43 final size:43
Alignment explanation
Indices: 26862446--26862531 Score: 163
Period size: 43 Copynumber: 2.0 Consensus size: 43
26862436 TGCCTCTGAG
*
26862446 AATAACAGGACTTATAGAGTACCCAGAAGAGATTATTGTAATA
1 AATAACAGGACTTATAGAGTACCCAGAAGAGATTACTGTAATA
26862489 AATAACAGGACTTATAGAGTACCCAGAAGAGATTACTGTAATA
1 AATAACAGGACTTATAGAGTACCCAGAAGAGATTACTGTAATA
26862532 TACTCAATTA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.44, C:0.13, G:0.19, T:0.24
Consensus pattern (43 bp):
AATAACAGGACTTATAGAGTACCCAGAAGAGATTACTGTAATA
Found at i:26864551 original size:17 final size:17
Alignment explanation
Indices: 26864505--26864551 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
26864495 ATTTACATTT
*
26864505 TTATCATTTATCGGGCA
1 TTATCATTTATCGAGCA
* *
26864522 TTATAATTGATCGAGCA
1 TTATCATTTATCGAGCA
26864539 CTT-TCATTTATCG
1 -TTATCATTTATCG
26864552 GGCTTTTACA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
17 22 0.92
18 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.43
Consensus pattern (17 bp):
TTATCATTTATCGAGCA
Found at i:26866543 original size:26 final size:24
Alignment explanation
Indices: 26866460--26866567 Score: 137
Period size: 26 Copynumber: 4.4 Consensus size: 24
26866450 CTGGAGGCCT
26866460 AGCCTCTTTTAAT-AACTGGGGCAA
1 AGCC-CTTTTAATAAACTGGGGCAA
* *
26866484 AGCCCTTTTGATAAACTGAGGCAA
1 AGCCCTTTTAATAAACTGGGGCAA
26866508 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTT-AATAAACTGGGGCA-A
*
26866534 AGCCCTTTTCAATAAACTGGGGCAT
1 AGCCCTTTT-AATAAACTGGGGCAA
*
26866559 AGCCTTTTT
1 AGCCCTTTT
26866568 GCACTTCCTC
Statistics
Matches: 75, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
23 7 0.09
24 23 0.31
25 20 0.27
26 25 0.33
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (24 bp):
AGCCCTTTTAATAAACTGGGGCAA
Found at i:26866643 original size:20 final size:20
Alignment explanation
Indices: 26866618--26866691 Score: 100
Period size: 20 Copynumber: 3.8 Consensus size: 20
26866608 TATGATTACG
*
26866618 TCATGTGCATTTCATACATA
1 TCATGTGCATATCATACATA
26866638 TCATGTGCATATCATACATA
1 TCATGTGCATATCATACATA
*
26866658 CCATGTGCATATCATATCA-A
1 TCATGTGCATATCATA-CATA
26866678 TCATGT--ATATCATA
1 TCATGTGCATATCATA
26866692 TCCCACGTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
18 8 0.16
20 40 0.80
21 2 0.04
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATA
Found at i:26873527 original size:36 final size:36
Alignment explanation
Indices: 26873484--26873555 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
26873474 GTTTGCAAAT
26873484 AAGAACTGTGCTAATCAATTGTAGGACATCGGAAGA
1 AAGAACTGTGCTAATCAATTGTAGGACATCGGAAGA
26873520 AAGAACTGTGCTAATCAATTGTAGGACATCGGAAGA
1 AAGAACTGTGCTAATCAATTGTAGGACATCGGAAGA
26873556 GATCTCAGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.39, C:0.14, G:0.25, T:0.22
Consensus pattern (36 bp):
AAGAACTGTGCTAATCAATTGTAGGACATCGGAAGA
Found at i:26881110 original size:47 final size:47
Alignment explanation
Indices: 26881047--26882159 Score: 1944
Period size: 47 Copynumber: 23.6 Consensus size: 47
26881037 CCCTTCGGGA
* * * * * *
26881047 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * *
26881094 CTTATCACATATATACA-TGTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCTATTAGGC
26881141 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881188 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881235 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881282 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881329 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881376 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881423 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881470 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881517 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881564 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881611 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881658 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881705 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881752 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881799 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26881846 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
26881893 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * * *
26881940 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCTATTAGGC
* * * * * *
26881987 CTTATCACACATACACA-TGTTCACATTCATCATATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATCGGCTATTAGGC
26882034 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
26882081 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
26882128 CTTATCACATATATATACACTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
26882160 TCAAATATAC
Statistics
Matches: 1035, Mismatches: 25, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
46 2 0.00
47 1009 0.97
48 2 0.00
49 22 0.02
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:26887969 original size:51 final size:48
Alignment explanation
Indices: 26887886--26887994 Score: 155
Period size: 51 Copynumber: 2.2 Consensus size: 48
26887876 CTGGAGGCCT
*
26887886 AGCCTCTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAATTAGGGCAA
1 AGCC-CTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTAGGGCAA
* *
26887935 AGCCCTTTTCAATAAACTGGGGCATAAGCCCTTTTCAATAAACTGGGGCAT
1 AGCCCTTTT-AAT-AACTGGGGCA-AAGCCCTTTTCAATAAACTAGGGCAA
26887986 AGCCCTTTT
1 AGCCCTTTT
26887995 GCACTTCCTC
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
48 5 0.09
49 7 0.13
50 10 0.19
51 32 0.59
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (48 bp):
AGCCCTTTTAATAACTGGGGCAAAGCCCTTTTCAATAAACTAGGGCAA
Found at i:26887970 original size:26 final size:25
Alignment explanation
Indices: 26887886--26887994 Score: 159
Period size: 25 Copynumber: 4.4 Consensus size: 25
26887876 CTGGAGGCCT
26887886 AGCCTCTTTT-AAT-AACTGGGGCAA
1 AGCC-CTTTTCAATAAACTGGGGCAA
* *
26887910 AGCCCTTTTCAATAAATTAGGGCAA
1 AGCCCTTTTCAATAAACTGGGGCAA
26887935 AGCCCTTTTCAATAAACTGGGGCATA
1 AGCCCTTTTCAATAAACTGGGGCA-A
*
26887961 AGCCCTTTTCAATAAACTGGGGCAT
1 AGCCCTTTTCAATAAACTGGGGCAA
26887986 AGCCCTTTT
1 AGCCCTTTT
26887995 GCACTTCCTC
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
23 5 0.06
24 7 0.09
25 40 0.52
26 25 0.32
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (25 bp):
AGCCCTTTTCAATAAACTGGGGCAA
Found at i:26888073 original size:20 final size:20
Alignment explanation
Indices: 26888044--26888138 Score: 142
Period size: 20 Copynumber: 4.8 Consensus size: 20
26888034 TTATGATTAC
*
26888044 ATCATGTGCATTTCATACAT
1 ATCATGTGCATATCATACAT
*
26888064 ATCATATGCATATCATACAT
1 ATCATGTGCATATCATACAT
26888084 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
26888104 ATCATGTGCATATCATATCA-
1 ATCATGTGCATATCATA-CAT
26888124 ATCATGT--ATATCATA
1 ATCATGTGCATATCATA
26888139 TCCCACGTAT
Statistics
Matches: 71, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
18 8 0.11
20 61 0.86
21 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.37
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:26888075 original size:11 final size:11
Alignment explanation
Indices: 26888044--26888121 Score: 78
Period size: 11 Copynumber: 7.6 Consensus size: 11
26888034 TTATGATTAC
*
26888044 ATCATGTGCAT
1 ATCATATGCAT
*
26888055 TTCATA--CAT
1 ATCATATGCAT
26888064 ATCATATGCAT
1 ATCATATGCAT
26888075 ATCATA--CAT
1 ATCATATGCAT
*
26888084 ATCATGTGCAT
1 ATCATATGCAT
26888095 ATCATA--CAT
1 ATCATATGCAT
*
26888104 ATCATGTGCAT
1 ATCATATGCAT
26888115 ATCATAT
1 ATCATAT
26888122 CAATCATGTA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
9 24 0.44
11 30 0.56
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (11 bp):
ATCATATGCAT
Found at i:26888136 original size:9 final size:10
Alignment explanation
Indices: 26888061--26888137 Score: 63
Period size: 9 Copynumber: 7.8 Consensus size: 10
26888051 GCATTTCATA
*
26888061 CATATCATAT
1 CATATCATGT
*
26888071 GCATATCAT-A
1 -CATATCATGT
26888081 CATATCATGT
1 CATATCATGT
*
26888091 GCATATCAT-A
1 -CATATCATGT
26888101 CATATCATGT
1 CATATCATGT
*
26888111 GCATATCATAT
1 -CATATCATGT
26888122 CA-ATCATGT
1 CATATCATGT
26888131 -ATATCAT
1 CATATCAT
26888138 ATCCCACGTA
Statistics
Matches: 55, Mismatches: 6, Indels: 12
0.75 0.08 0.16
Matches are distributed among these distances:
8 1 0.02
9 27 0.49
10 2 0.04
11 25 0.45
ACGTcount: A:0.36, C:0.19, G:0.08, T:0.36
Consensus pattern (10 bp):
CATATCATGT
Found at i:26890714 original size:27 final size:27
Alignment explanation
Indices: 26890683--26890859 Score: 203
Period size: 27 Copynumber: 6.5 Consensus size: 27
26890673 TAAATTGTAC
26890683 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26890710 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26890736 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26890764 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26890792 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26890819 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26890846 AGCACTGAGTGTGC
1 AGCACTAAGTGTGC
26890860 AGACTCAATA
Statistics
Matches: 128, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26890797 original size:82 final size:81
Alignment explanation
Indices: 26890684--26890839 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26890674 AAATTGTACA
* *
26890684 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26890748 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26890765 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26890830 TGCGAGTTGA
65 TGCGAATTGA
26890840 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26890851 original size:82 final size:81
Alignment explanation
Indices: 26890680--26890859 Score: 227
Period size: 82 Copynumber: 2.2 Consensus size: 81
26890670 GATTAAATTG
* *
26890680 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26890745 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26890761 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26890825 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26890843 TATAGCACTGAGTGTGC
1 TACAGCACTAAGTGTGC
26890860 AGACTCAATA
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26891456 original size:81 final size:81
Alignment explanation
Indices: 26891316--26891477 Score: 290
Period size: 81 Copynumber: 2.0 Consensus size: 81
26891306 ACTCACTCGA
*
26891316 TGTTTCCTTGTCACCCACTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCGGGCCGTCAT-
1 TGTTTCCTTGTCACCCACTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCAGGCCGTCATC
26891380 TGAAGTCATCACACCGG
66 T-AAGTCATCACACCGG
*
26891397 TGTTTCCTTGTCACCCATTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCAGGCCGTCATC
1 TGTTTCCTTGTCACCCACTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCAGGCCGTCATC
26891462 TAAGTCATCACACCGG
66 TAAGTCATCACACCGG
26891478 ATAGCAAGTT
Statistics
Matches: 78, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
81 77 0.99
82 1 0.01
ACGTcount: A:0.17, C:0.26, G:0.23, T:0.34
Consensus pattern (81 bp):
TGTTTCCTTGTCACCCACTATAGGTTGCTTGGACTCATCTATTTTTGCGGGGTCAGGCCGTCATC
TAAGTCATCACACCGG
Found at i:26902185 original size:56 final size:56
Alignment explanation
Indices: 26902099--26902271 Score: 337
Period size: 56 Copynumber: 3.1 Consensus size: 56
26902089 AGGGATGATA
26902099 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
*
26902155 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
26902211 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
1 GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
26902267 GGCAA
1 GGCAA
26902272 TAAACTAATA
Statistics
Matches: 115, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 115 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
GGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATG
Found at i:26903484 original size:40 final size:40
Alignment explanation
Indices: 26903400--26903624 Score: 239
Period size: 40 Copynumber: 5.7 Consensus size: 40
26903390 TCGAATGATG
* * *
26903400 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
26903439 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
26903480 TCCGGGCTAAG-CCCGAAGGCA-TTGATACGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TGCGAGTTACT-AAT
* *
26903520 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
26903559 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
26903598 AACCGGGCTATGTCCCAAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26903625 AACGAGTAGC
Statistics
Matches: 159, Mismatches: 16, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
38 3 0.02
39 30 0.19
40 113 0.71
41 13 0.08
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:26903539 original size:79 final size:80
Alignment explanation
Indices: 26903400--26903624 Score: 253
Period size: 79 Copynumber: 2.8 Consensus size: 80
26903390 TCGAATGATG
* * * * * *
26903400 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
26903463 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* *
26903480 TCCGGGCTAAG-CCCGAAGGCA-TTGATACGAGTTACTA-AATTCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTG-TACGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCAT
*
26903542 TTGTGCGAGTTACTAAA
64 TTGTGCGAGATACTAAA
* * * *
26903559 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCAAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
26903624 G
66 G
26903625 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
78 2 0.02
79 60 0.49
80 55 0.45
81 5 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:26903646 original size:119 final size:119
Alignment explanation
Indices: 26903407--26903647 Score: 278
Period size: 119 Copynumber: 2.0 Consensus size: 119
26903397 ATGTCCGGGC
*
26903407 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
* * *
26903472 ATACTAATTCCGGGCTAAGCCCGAAGGCATTGATACGAGTTACTAAATTCGGGT
66 ATACTAATACCGGGCTAAGCCCAAAGGCATTGATACGAGTTACTAAATTCCGGT
* * * **
26903526 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTTGTGCG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTTGTGCG
* * *
26903589 AGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGA-ACGAG-TAGCTATA-TCCGGT
64 AGATACTAAT-ACCGGGCTAAG-CCCAAAGGCA-TTGATACGAGTTA-CTAAATTCCGGT
26903645 TAA
1 TAA
26903648 ATTCTGAAGG
Statistics
Matches: 104, Mismatches: 12, Indels: 12
0.81 0.09 0.09
Matches are distributed among these distances:
118 3 0.03
119 72 0.69
120 25 0.24
121 4 0.04
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (119 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAG
ATACTAATACCGGGCTAAGCCCAAAGGCATTGATACGAGTTACTAAATTCCGGT
Found at i:26909394 original size:25 final size:25
Alignment explanation
Indices: 26909336--26909401 Score: 96
Period size: 25 Copynumber: 2.6 Consensus size: 25
26909326 CAGCTCACAT
* * *
26909336 GAGCTTACCGTTATTCAGCTTGGAG
1 GAGCTTACTGTTATCCAACTTGGAG
26909361 GAGCTTACTGTTATCCAACTTGGAG
1 GAGCTTACTGTTATCCAACTTGGAG
26909386 GAGCTTACTGATTATC
1 GAGCTTACTG-TTATC
26909402 GCTAATATGA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
25 32 0.86
26 5 0.14
ACGTcount: A:0.23, C:0.20, G:0.24, T:0.33
Consensus pattern (25 bp):
GAGCTTACTGTTATCCAACTTGGAG
Found at i:26909858 original size:17 final size:17
Alignment explanation
Indices: 26909836--26909877 Score: 52
Period size: 16 Copynumber: 2.6 Consensus size: 17
26909826 TACAAGTCAG
* *
26909836 ATATAATATACTTTTAA
1 ATATAATACACATTTAA
26909853 ATATAA-ACACATTTAA
1 ATATAATACACATTTAA
26909869 ATA-AATACA
1 ATATAATACA
26909878 TATAATAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 2 0.09
16 14 0.64
17 6 0.27
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.36
Consensus pattern (17 bp):
ATATAATACACATTTAA
Found at i:26915718 original size:31 final size:33
Alignment explanation
Indices: 26915676--26915746 Score: 119
Period size: 31 Copynumber: 2.2 Consensus size: 33
26915666 GATCATCATG
26915676 ATAAGTTATAAATCAAAACCCC-AAAAAA-AATC
1 ATAAG-TATAAATCAAAACCCCAAAAAAATAATC
26915708 ATAAGTATAAATCAAAACCCCAAAAAAATAATC
1 ATAAGTATAAATCAAAACCCCAAAAAAATAATC
26915741 ATAAGT
1 ATAAGT
26915747 GGCCTTATTA
Statistics
Matches: 37, Mismatches: 0, Indels: 3
0.93 0.00 0.08
Matches are distributed among these distances:
31 16 0.43
32 11 0.30
33 10 0.27
ACGTcount: A:0.59, C:0.17, G:0.04, T:0.20
Consensus pattern (33 bp):
ATAAGTATAAATCAAAACCCCAAAAAAATAATC
Found at i:26916115 original size:37 final size:37
Alignment explanation
Indices: 26916065--26916142 Score: 131
Period size: 37 Copynumber: 2.1 Consensus size: 37
26916055 GTATATGCAA
26916065 AACCCAACACATAACCAACCACATACACCC-CCTTACC
1 AACCCAACACATAACCAACCACATAC-CCCTCCTTACC
*
26916102 AACCCAACACATAACCAACCCCATACCCCTCCTTACC
1 AACCCAACACATAACCAACCACATACCCCTCCTTACC
26916139 AACC
1 AACC
26916143 TTTCACCATG
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
36 3 0.08
37 36 0.92
ACGTcount: A:0.38, C:0.50, G:0.00, T:0.12
Consensus pattern (37 bp):
AACCCAACACATAACCAACCACATACCCCTCCTTACC
Found at i:26916120 original size:16 final size:16
Alignment explanation
Indices: 26916065--26916122 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 16
26916055 GTATATGCAA
26916065 AACCCAACACATAACC
1 AACCCAACACATAACC
* *
26916081 AACCACATACACCCCCTTACC
1 AACC-CA-ACA---CATAACC
26916102 AACCCAACACATAACC
1 AACCCAACACATAACC
26916118 AACCC
1 AACCC
26916123 CATACCCCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
16 14 0.42
17 2 0.06
18 3 0.09
19 3 0.09
20 2 0.06
21 9 0.27
ACGTcount: A:0.43, C:0.48, G:0.00, T:0.09
Consensus pattern (16 bp):
AACCCAACACATAACC
Found at i:26916251 original size:27 final size:26
Alignment explanation
Indices: 26916212--26916323 Score: 125
Period size: 27 Copynumber: 4.2 Consensus size: 26
26916202 AGCATGGCTG
* * *
26916212 CCAGAACTGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
26916238 CCAGATACAGATAATCGTGGCAGAACCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
26916266 CCAGAACAGTTATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
26916293 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
26916320 CCAG
1 CCAG
26916324 GACGCTTCCT
Statistics
Matches: 73, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.08
27 51 0.70
28 16 0.22
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:26938217 original size:27 final size:26
Alignment explanation
Indices: 26938177--26938289 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
26938167 CAGCATGACT
*
26938177 ACCAGAACAGATAATGTGACAGAGTC
1 ACCAGAACAGATAATGTGACAGAGCC
* *
26938203 ACCAGATAAAGATAATCGTGACAGAACC
1 ACCAGA-ACAGATAAT-GTGACAGAGCC
*
26938231 ACCAGAACAGATATATGTGGCAGAGCC
1 ACCAGAACAGATA-ATGTGACAGAGCC
* * *
26938258 ACCAGATCAGATAATTGTGGCATAGCC
1 ACCAGAACAGATAA-TGTGACAGAGCC
26938285 ACCAG
1 ACCAG
26938290 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.68
28 17 0.23
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (26 bp):
ACCAGAACAGATAATGTGACAGAGCC
Found at i:26938855 original size:35 final size:35
Alignment explanation
Indices: 26938809--26938881 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
26938799 CCACGAACGA
26938809 ACTGCCTACAATTATAATACTACCACATTAATCTT
1 ACTGCCTACAATTATAATACTACCACATTAATCTT
*
26938844 ACTGCCTACAATTATAATACTACCACGTTAATCTT
1 ACTGCCTACAATTATAATACTACCACATTAATCTT
26938879 ACT
1 ACT
26938882 ACCAAAACGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.36, C:0.26, G:0.04, T:0.34
Consensus pattern (35 bp):
ACTGCCTACAATTATAATACTACCACATTAATCTT
Found at i:26939787 original size:24 final size:24
Alignment explanation
Indices: 26939755--26939803 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
26939745 ACACAGTTCA
26939755 CCCTAATCAGCTCCTAAATCCTCT
1 CCCTAATCAGCTCCTAAATCCTCT
* *
26939779 CCCTTATCAGCTCCTAAATCTTCT
1 CCCTAATCAGCTCCTAAATCCTCT
26939803 C
1 C
26939804 TAGACAGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.22, C:0.41, G:0.04, T:0.33
Consensus pattern (24 bp):
CCCTAATCAGCTCCTAAATCCTCT
Found at i:26942536 original size:50 final size:50
Alignment explanation
Indices: 26942413--26943003 Score: 471
Period size: 50 Copynumber: 11.8 Consensus size: 50
26942403 TGAGAACACA
* * * *** *
26942413 TGTGTAGTACTATGTACAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGTCACG
** * * *
26942465 TGTGTAGTACTAAGTTTAGGCTACTACATGTACCAGATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * ** * * * *
26942515 TGTCTAGTACGAAGTGCAGGCTACTATGCATACCCGACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGTCACG
* * *
26942566 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * *
26942616 TGTGTAG---TAAGTGTAGGCTACTACATGTACCAGATAGTTAGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * * * * *
26942663 TGTCTAGTACGAAGTGCAGGCTACTATGCGTACCCGATAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT-AGGTCACG
* * * *
26942714 TGTGTAGTGCTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * *
26942764 TGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATAGTTAGGTCGA-A
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC-ACG
* * * * * * *
26942814 TGTGTAGTACTAAATGCAAGCTATTACGCGTACCCA-ACAACTTCA-ATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGA-TAGTT-AGGTCACG
* ** *
26942865 TGTGTAGTAGTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * * *
26942915 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATTGTT-GGCCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
* * * *
26942964 TGTGTAGCACTAAGTGAAGGCTACTATGCGTACCAGATAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
26943004 CTTCGGTTAC
Statistics
Matches: 422, Mismatches: 101, Indels: 35
0.76 0.18 0.06
Matches are distributed among these distances:
47 41 0.10
49 41 0.10
50 197 0.47
51 109 0.26
52 34 0.08
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACG
Found at i:26942587 original size:101 final size:100
Alignment explanation
Indices: 26942455--26942942 Score: 416
Period size: 101 Copynumber: 4.9 Consensus size: 100
26942445 TAAGATGGTT
* ** * * *
26942455 TTAGGTCACGTGTGTAGTACTAAGTTTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGT
* * *
26942520 AGTACGAAGTGCAGGCTACTATGCATACCCGACAAC
66 AGTACTAAGTGCAGGCTACTACGCATACCAGA-AAC
* *
26942556 TTCA-ATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTG
1 TT-AGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTG
* *** * *
26942620 TAG---TAAGTGTAGGCTACTACATGTACCAGATAG
65 TAGTACTAAGTGCAGGCTACTACGCATACCAGAAAC
* * * * * * * * * * *
26942653 TTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCGTACCCGATAACTTCA-ATCACGTGT
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT-AGGTCACATGT
* * ** * ***
26942717 GTAGTGCTAAGTGTAGGCTACTACGTGTATCAGATGG
64 GTAGTACTAAGTGCAGGCTACTACGCATACCAGAAAC
* * *
26942754 TTAGGTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCAAATAGTTAGGTCGA-ATGTG
1 TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTC-ACATGTG
* * * *
26942818 TAGTACTAAATGCAAGCTATTACGCGTACCCA-ACAAC
65 TAGTACTAAGTGCAGGCTACTACGCATA-CCAGA-AAC
* ** * *
26942855 TTCA-ATCACGTGTGTAGTAGTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTG
1 TT-AGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTG
26942919 TAGTACTAAGTGCAGGCTACTACG
65 TAGTACTAAGTGCAGGCTACTACG
26942943 TGTATCAGAT
Statistics
Matches: 308, Mismatches: 66, Indels: 26
0.77 0.17 0.06
Matches are distributed among these distances:
96 1 0.00
97 38 0.12
98 33 0.11
99 2 0.01
100 33 0.11
101 199 0.65
102 2 0.01
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (100 bp):
TTAGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGTGT
AGTACTAAGTGCAGGCTACTACGCATACCAGAAAC
Found at i:26942869 original size:151 final size:151
Alignment explanation
Indices: 26942413--26942997 Score: 820
Period size: 151 Copynumber: 3.9 Consensus size: 151
26942403 TGAGAACACA
* * * * * *
26942413 TGTGTAGTACTATGTACAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACTAA
1 TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGG--TTAGGTCACGTGTGTAGTACTAA
*
26942478 GTTTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATG
64 GTGTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATG
*
26942543 CATACCCGACAACTTCAATCACG
129 CGTACCCGACAACTTCAATCACG
* *
26942566 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACATGTGTAG---TAAGT
1 TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
26942628 GTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCG
66 GTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCG
*
26942693 TACCCGATAACTTCAATCACG
131 TACCCGACAACTTCAATCACG
*
26942714 TGTGTAGTGCTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
1 TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
* * * * * * * * *
26942779 GTAGGCTACTACGTGTACCAAATAGTTAGGTCGAATGTGTAGTACTAAATGCAAGCTATTACGCG
66 GTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCG
*
26942844 TACCCAACAACTTCAATCACG
131 TACCCGACAACTTCAATCACG
*
26942865 TGTGTAGTAG-TAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTGTAGTACTAAG
1 TGTGTAGT-GCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAG
* * * * * * * * *
26942929 TGCAGGCTACTACGTGTATCAGATTGTT-GGCCGCATGTGTAGCACTAAGTGAAGGCTACTATGC
65 TGTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGC
26942993 GTACC
130 GTACC
26942998 AGATAGCTTC
Statistics
Matches: 391, Mismatches: 37, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
148 142 0.36
150 33 0.08
151 180 0.46
152 1 0.00
153 35 0.09
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (151 bp):
TGTGTAGTGCTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGTGTAGTACTAAGT
GTAGGCTACTACATGTACCAGATAGTTAGGTCGCATGTCTAGTACGAAGTGCAGGCTACTATGCG
TACCCGACAACTTCAATCACG
Found at i:26943222 original size:16 final size:15
Alignment explanation
Indices: 26943201--26943230 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26943191 GAATGGAGTA
26943201 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
26943217 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
26943231 TAAAATAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:26946748 original size:42 final size:41
Alignment explanation
Indices: 26946678--26946797 Score: 102
Period size: 43 Copynumber: 2.8 Consensus size: 41
26946668 GTAACTCAAT
* * *
26946678 ATCGATGCCTCTGTCCCAGATAGAGTCTTACACGAAAT-T-A
1 ATCGAGGCCTGTGTCCCAGACAG-GTCTTACACGAAATCTCA
* * *
26946718 GATACGATGTC-GATGTCCCAGACATGGTCTTATACGTAAATCTCA
1 -AT-CGAGGCCTG-TGTCCCAGACA-GGTCTTACACG-AAATCTCA
26946763 ATCGAGGCCTGTGTCCCAGACACGGTCTTACACGA
1 ATCGAGGCCTGTGTCCCAGACA-GGTCTTACACGA
26946798 TGTCTCAGAC
Statistics
Matches: 64, Mismatches: 8, Indels: 13
0.75 0.09 0.15
Matches are distributed among these distances:
41 2 0.03
42 26 0.41
43 31 0.48
44 4 0.06
45 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
ATCGAGGCCTGTGTCCCAGACAGGTCTTACACGAAATCTCA
Found at i:26954117 original size:42 final size:43
Alignment explanation
Indices: 26954027--26954119 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 43
26954017 ATCCCGGATG
* *** *
26954027 TGGTCTTACATGTAACTCAATATCGATGCCTCTGTCCCAGATA
1 TGGTCTTACATGTAAATCAATATCGATGCAGATGTCCCAGACA
* *
26954070 GGGTCTTACATG-AAATCAGATAT-GATGCAGATGTTCCAGACA
1 TGGTCTTACATGTAAATCA-ATATCGATGCAGATGTCCCAGACA
26954112 TGGTCTTA
1 TGGTCTTA
26954120 TACATAAATC
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
42 26 0.63
43 15 0.37
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.31
Consensus pattern (43 bp):
TGGTCTTACATGTAAATCAATATCGATGCAGATGTCCCAGACA
Found at i:26957688 original size:29 final size:29
Alignment explanation
Indices: 26957604--26957693 Score: 121
Period size: 29 Copynumber: 3.2 Consensus size: 29
26957594 TACATACATG
*
26957604 CATATGGCCCACT-GGCCC-AATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
* * *
26957631 TATATGGCCCATTAGGCCCAAAACACATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
*
26957660 CGTATGGCCCATTAGGCCCAAATCTCATT
1 CATATGGCCCATTAGGCCCAAATCTCATT
26957689 CATAT
1 CATAT
26957694 TCATGATTTC
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
27 11 0.21
28 5 0.10
29 36 0.69
ACGTcount: A:0.28, C:0.31, G:0.14, T:0.27
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCTCATT
Found at i:26962528 original size:50 final size:50
Alignment explanation
Indices: 26962412--26962656 Score: 303
Period size: 50 Copynumber: 4.9 Consensus size: 50
26962402 ATTGTGAGAA
* * * * *
26962412 CACATGTGCAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAG--TTAGGT
* *
26962464 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTAGGT
* * * *
26962514 CGCATGTGTAGTACTAAGTGCAGGCTACTACGTGCATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTAGGT
** * *
26962564 CATGTGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTAGGT
* * *
26962613 CACATGTGTAGCACTAAGTGAAGGCTACTATGCGTATCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAG
26962657 CTTCGGTTAC
Statistics
Matches: 168, Mismatches: 25, Indels: 3
0.86 0.13 0.02
Matches are distributed among these distances:
49 40 0.24
50 91 0.54
52 37 0.22
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTATCAGATAGTTAGGT
Found at i:26962799 original size:205 final size:205
Alignment explanation
Indices: 26962570--26962978 Score: 818
Period size: 205 Copynumber: 2.0 Consensus size: 205
26962560 AGGTCATGTG
26962570 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTGGTCACATGTGTAGCACTAAGTGAA
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTGGTCACATGTGTAGCACTAAGTGAA
26962635 GGCTACTATGCGTATCAGATAGCTTCGGTTACAAGGGTGGTAATATGTGCAGGCAACCATGTATC
66 GGCTACTATGCGTATCAGATAGCTTCGGTTACAAGGGTGGTAATATGTGCAGGCAACCATGTATC
26962700 TATTATTATTCTGATGAGTTCAACGGGAAATCGATTAAGTGAAAATACATGTGAACATGATCATG
131 TATTATTATTCTGATGAGTTCAACGGGAAATCGATTAAGTGAAAATACATGTGAACATGATCATG
26962765 TGATGAATCC
196 TGATGAATCC
26962775 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTGGTCACATGTGTAGCACTAAGTGAA
1 TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTGGTCACATGTGTAGCACTAAGTGAA
26962840 GGCTACTATGCGTATCAGATAGCTTCGGTTACAAGGGTGGTAATATGTGCAGGCAACCATGTATC
66 GGCTACTATGCGTATCAGATAGCTTCGGTTACAAGGGTGGTAATATGTGCAGGCAACCATGTATC
26962905 TATTATTATTCTGATGAGTTCAACGGGAAATCGATTAAGTGAAAATACATGTGAACATGATCATG
131 TATTATTATTCTGATGAGTTCAACGGGAAATCGATTAAGTGAAAATACATGTGAACATGATCATG
26962970 TGATGAATC
196 TGATGAATC
26962979 AGTGTAGGTA
Statistics
Matches: 204, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
205 204 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.30
Consensus pattern (205 bp):
TGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGTTGGTCACATGTGTAGCACTAAGTGAA
GGCTACTATGCGTATCAGATAGCTTCGGTTACAAGGGTGGTAATATGTGCAGGCAACCATGTATC
TATTATTATTCTGATGAGTTCAACGGGAAATCGATTAAGTGAAAATACATGTGAACATGATCATG
TGATGAATCC
Found at i:26963080 original size:16 final size:15
Alignment explanation
Indices: 26963059--26963088 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26963049 GAATGAAGTA
26963059 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
26963075 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
26963089 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:26964790 original size:25 final size:25
Alignment explanation
Indices: 26964730--26964791 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
26964720 CTCACATGAG
* *
26964730 CTTACCGTTATTCAGCTCGAAAGAT
1 CTTACCGTTATCCAGCTCGAAAGAA
* *
26964755 CTTATCGTTATCCAGCTCG-GAGAA
1 CTTACCGTTATCCAGCTCGAAAGAA
26964779 CTTACCGATTATC
1 CTTACCG-TTATC
26964792 ACTCGTATGA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
24 9 0.29
25 22 0.71
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (25 bp):
CTTACCGTTATCCAGCTCGAAAGAA
Found at i:26967325 original size:9 final size:10
Alignment explanation
Indices: 26967280--26967334 Score: 53
Period size: 10 Copynumber: 5.7 Consensus size: 10
26967270 TCTCATGGGC
*
26967280 ATGGGCCGTT
1 ATGGGCCGTG
*
26967290 ATGGGCC-TC
1 ATGGGCCGTG
*
26967299 ATTGGGCCGAG
1 A-TGGGCCGTG
26967310 ATGGGCCGTG
1 ATGGGCCGTG
26967320 -TGGGCC-TG
1 ATGGGCCGTG
26967328 ATGGGCC
1 ATGGGCC
26967335 CAATGGGCTC
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 2 0.05
9 14 0.37
10 21 0.55
11 1 0.03
ACGTcount: A:0.11, C:0.24, G:0.44, T:0.22
Consensus pattern (10 bp):
ATGGGCCGTG
Found at i:26967793 original size:28 final size:27
Alignment explanation
Indices: 26967761--26967826 Score: 64
Period size: 28 Copynumber: 2.4 Consensus size: 27
26967751 TTGGAGGAAG
*
26967761 TACTG-TATTAGTGGTTTTGCCACGTAAT
1 TACTGCTATTAGTGGCTTTGCCACGT--T
* *
26967789 TACTGCT-CTGGTGGCTTTGCCACGTT
1 TACTGCTATTAGTGGCTTTGCCACGTT
*
26967815 TACTGTTATTAG
1 TACTGCTATTAG
26967827 CAGCTTTGTT
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
26 7 0.23
27 2 0.07
28 20 0.67
29 1 0.03
ACGTcount: A:0.17, C:0.18, G:0.23, T:0.42
Consensus pattern (27 bp):
TACTGCTATTAGTGGCTTTGCCACGTT
Found at i:26969933 original size:55 final size:55
Alignment explanation
Indices: 26969865--26969999 Score: 204
Period size: 55 Copynumber: 2.5 Consensus size: 55
26969855 TGAGCCCTTA
*
26969865 GCCCGTGTG-CAACACTGACTTTA-AAGCACGGCCATGACACATGCCCGTGTGGCCT
1 GCCCGTG-GACAACACTGACTTTAGAA-CACGGCCATGACACACGCCCGTGTGGCCT
26969920 GCCCGTGGACAACACTGACTTTAGAACACGGCCATGACACACGCCCGTGTGGCCT
1 GCCCGTGGACAACACTGACTTTAGAACACGGCCATGACACACGCCCGTGTGGCCT
*
26969975 GCCTGTGGACAACACTTG-CTTTAGA
1 GCCCGTGGACAACAC-TGACTTTAGA
26970000 TTTTAAGTGC
Statistics
Matches: 75, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
54 1 0.01
55 70 0.93
56 4 0.05
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (55 bp):
GCCCGTGGACAACACTGACTTTAGAACACGGCCATGACACACGCCCGTGTGGCCT
Found at i:26970948 original size:46 final size:46
Alignment explanation
Indices: 26970893--26971059 Score: 167
Period size: 46 Copynumber: 3.6 Consensus size: 46
26970883 TTTGTAGCCA
* *
26970893 ATGCATGTCCCAAACATGTCTTACACTGGCT-TACATCTCAAGGTCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTA-ATCTCAAGGCCG
* * *
26970939 ATGCATGTCCCAGACATGTCTTACACTAGCTCTAGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTAATCTCAAGGCCG
* * * ** *
26970985 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCCA
1 ATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTAAT-CTCAAGGCCG
* *
26971033 ATGCATGTCCTAAACATGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
26971060 AGCACACAAA
Statistics
Matches: 102, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
46 51 0.50
47 28 0.27
48 22 0.22
49 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTAATCTCAAGGCCG
Found at i:26971037 original size:94 final size:90
Alignment explanation
Indices: 26970795--26971065 Score: 246
Period size: 94 Copynumber: 2.9 Consensus size: 90
26970785 GAGTATAATA
* *
26970795 CCGATGACATGTCCTAGACATGGTCTTACACTGACTCTCACATATTCGTGCCGATGCCATGTCCC
1 CCGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCATA-ATT-G-GCCGATG-CATGTCCC
* * * **
26970860 AGACACGGTCTTACACTA-CACATTTTGTAG
61 AGACA-TGTCTTACACTAGCACAGTCTCAAG
* * * *
26970890 CCAATGCATGTCCCAAACAT-GTCTTACACTGGCT-TACATCTCAA--GGTCGATGCATGTCCCA
1 CCGATGCATGTCCTAGACATGGTCTTACACTGGCTCT-CA--T-AATTGGCCGATGCATGTCCCA
*
26970951 GACATGTCTTACACTAGCTCTAGTCTCAATG
62 GACATGTCTTACACTAGCAC-AGTCTCAA-G
* * *
26970982 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATGTGGCCAATGCATGTCCTAAA
1 CCGATG-CATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-TGGCCGATGCATGTCCCAGA
26971047 CATGTCTTACACTAGCACA
64 CATGTCTTACACTAGCACA
26971066 CAAATGACCC
Statistics
Matches: 143, Mismatches: 20, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
89 11 0.08
90 15 0.10
91 12 0.08
92 9 0.06
93 28 0.20
94 60 0.42
95 7 0.05
96 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.28
Consensus pattern (90 bp):
CCGATGCATGTCCTAGACATGGTCTTACACTGGCTCTCATAATTGGCCGATGCATGTCCCAGACA
TGTCTTACACTAGCACAGTCTCAAG
Found at i:26971424 original size:29 final size:30
Alignment explanation
Indices: 26971391--26971447 Score: 89
Period size: 29 Copynumber: 1.9 Consensus size: 30
26971381 AATTTCACAT
* *
26971391 CTTTGGTAAAATGATCA-TTTGCCCCTAAA
1 CTTTGGCAAAATGACCATTTTGCCCCTAAA
26971420 CTTTGGCAAAATGACCATTTTGCCCCTA
1 CTTTGGCAAAATGACCATTTTGCCCCTA
26971448 TACTCGAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 15 0.60
30 10 0.40
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (30 bp):
CTTTGGCAAAATGACCATTTTGCCCCTAAA
Found at i:26972893 original size:30 final size:30
Alignment explanation
Indices: 26972857--26972932 Score: 107
Period size: 30 Copynumber: 2.5 Consensus size: 30
26972847 TGGTTCTCAC
* *
26972857 ATCCCTTTTCGTAATTCGATAACCAAAGTT
1 ATCCCTTTTCATAATTCGATAACCAAAGCT
* * *
26972887 ATCCCTTTTCATAGTTCGATAGCCGAAGCT
1 ATCCCTTTTCATAATTCGATAACCAAAGCT
26972917 ATCCCTTTTCATAATT
1 ATCCCTTTTCATAATT
26972933 TGATTGTCAT
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTCGATAACCAAAGCT
Found at i:26972951 original size:30 final size:30
Alignment explanation
Indices: 26972887--26973091 Score: 143
Period size: 30 Copynumber: 6.8 Consensus size: 30
26972877 AACCAAAGTT
* * *
26972887 ATCCCTTTTCATAGTTCGATAGCCGA--AGCT
1 ATCCCTTTTCATAATTTGATAGCC-ATCA-CC
* *
26972917 ATCCCTTTTCATAATTTGATTGTCATCACC
1 ATCCCTTTTCATAATTTGATAGCCATCACC
** ****
26972947 ATCCCTTTTCATTGTTTGATAGTTGCCACC
1 ATCCCTTTTCATAATTTGATAGCCATCACC
* **
26972977 ATCCCTTTTTCATGATTTGATAG-CAGAAGCC
1 ATCCC-TTTTCATAATTTGATAGCCATCA-CC
*
26973008 ATCCCTTTTCATTAGA-TCGATAGCCA-CAGCC
1 ATCCCTTTTCA-TA-ATTTGATAGCCATCA-CC
* * *
26973039 ATCCCTTTTCATAATTTGATGGCCGTCACT
1 ATCCCTTTTCATAATTTGATAGCCATCACC
26973069 ATCCCTTTTCATAA-TTGATAGCC
1 ATCCCTTTTCATAATTTGATAGCC
26973092 GAAGTTATCC
Statistics
Matches: 141, Mismatches: 25, Indels: 19
0.76 0.14 0.10
Matches are distributed among these distances:
29 10 0.07
30 81 0.57
31 47 0.33
32 3 0.02
ACGTcount: A:0.23, C:0.27, G:0.13, T:0.38
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATAGCCATCACC
Found at i:26973073 original size:61 final size:60
Alignment explanation
Indices: 26972887--26973109 Score: 202
Period size: 61 Copynumber: 3.7 Consensus size: 60
26972877 AACCAAAGTT
* * * * *
26972887 ATCCCTTTTCATAGTTCGATAGCCGAAGCTATCCCTTTTCATAATTTGATTGTCATCACC
1 ATCCCTTTTCATAGATCGATAGCCGAAGCCATCCCTTTTCATAATTTGATAGCCGTCACC
* * * ** * * * *
26972947 ATCCCTTTTCATTGTTTGATAGTTGCCA-CCATCCCTTTTTCATGATTTGATAGCAG-AAGCC
1 ATCCCTTTTCATAGATCGATAGCCG-AAGCCATCCC-TTTTCATAATTTGATAGCCGTCA-CC
* *
26973008 ATCCCTTTTCATTAGATCGATAGCC-ACAGCCATCCCTTTTCATAATTTGATGGCCGTCACT
1 ATCCCTTTTCA-TAGATCGATAGCCGA-AGCCATCCCTTTTCATAATTTGATAGCCGTCACC
* **
26973069 ATCCCTTTTCATA-ATTGATAGCCGAAGTTATCCCTTTTCAT
1 ATCCCTTTTCATAGATCGATAGCCGAAGCCATCCCTTTTCAT
26973110 TCGTCAATGA
Statistics
Matches: 129, Mismatches: 26, Indels: 17
0.75 0.15 0.10
Matches are distributed among these distances:
59 23 0.18
60 31 0.24
61 59 0.46
62 16 0.12
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.38
Consensus pattern (60 bp):
ATCCCTTTTCATAGATCGATAGCCGAAGCCATCCCTTTTCATAATTTGATAGCCGTCACC
Found at i:26976125 original size:35 final size:33
Alignment explanation
Indices: 26976086--26976151 Score: 78
Period size: 35 Copynumber: 1.9 Consensus size: 33
26976076 TCTCATCTCG
*
26976086 AAGGACCTATAAACTATTTACACGGTGTCACCTTA
1 AAGGACCTATAAACCATTTACA--GTGTCACCTTA
* * *
26976121 AAGGACTTGTAAACCATTTTCAGTGTCACCT
1 AAGGACCTATAAACCATTTACAGTGTCACCT
26976152 ATTAGAGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 9 0.33
35 18 0.67
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (33 bp):
AAGGACCTATAAACCATTTACAGTGTCACCTTA
Found at i:26978479 original size:26 final size:26
Alignment explanation
Indices: 26978450--26978501 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
26978440 CCTCCAAACT
*
26978450 TAATTTATTGCTTGTCCTAGTAATGC
1 TAATTTATTGCTCGTCCTAGTAATGC
26978476 TAATTTATTGCTCGTCCTAGTAATGC
1 TAATTTATTGCTCGTCCTAGTAATGC
26978502 ATTGCTCGTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.17, G:0.15, T:0.44
Consensus pattern (26 bp):
TAATTTATTGCTCGTCCTAGTAATGC
Found at i:26978505 original size:20 final size:20
Alignment explanation
Indices: 26978482--26978522 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
26978472 ATGCTAATTT
26978482 ATTGCTCGTCCTAGTAATGC
1 ATTGCTCGTCCTAGTAATGC
26978502 ATTGCTCGTCCTAGTAATGC
1 ATTGCTCGTCCTAGTAATGC
26978522 A
1 A
26978523 CAAATTGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.34
Consensus pattern (20 bp):
ATTGCTCGTCCTAGTAATGC
Found at i:26987221 original size:39 final size:40
Alignment explanation
Indices: 26987126--26987387 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
26987116 TTGAATGATG
*
26987126 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
26987164 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
26987205 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
26987244 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26987283 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
26987322 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
26987361 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26987388 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:26997182 original size:40 final size:40
Alignment explanation
Indices: 26997093--26997356 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
26997083 TTGAATGATG
* *
26997093 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
26997132 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
26997172 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26997211 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26997251 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26997291 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26997332 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26997357 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26997374 original size:120 final size:118
Alignment explanation
Indices: 26997093--26997389 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
26997083 TTGAATGATG
* *
26997093 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
26997153 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
26997211 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
26997276 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
26997332 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
26997390 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:27000588 original size:40 final size:39
Alignment explanation
Indices: 27000527--27000604 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 39
27000517 TTAGACAAAC
*
27000527 ATTAATGATGTCAAAGTTAAGACACATAATTAAA-ACACAT
1 ATTAATGATGTCAAAGCTAAG--ACATAATTAAAGACACAT
*
27000567 ATTAATTATGTTCAAA-CTAAGACATAATTAAAGACACA
1 ATTAATGATG-TCAAAGCTAAGACATAATTAAAGACACA
27000605 AACTAAAGTA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
38 11 0.32
39 5 0.15
40 13 0.38
41 5 0.15
ACGTcount: A:0.50, C:0.13, G:0.09, T:0.28
Consensus pattern (39 bp):
ATTAATGATGTCAAAGCTAAGACATAATTAAAGACACAT
Found at i:27004008 original size:43 final size:43
Alignment explanation
Indices: 27003884--27004040 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
27003874 TGTGTTTTTG
* * *
27003884 TGTAAGACCATGTCTGGGATATTGGCATCAACT-TATGATTTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCAA-TATTTGATTT-CA
* * * *
27003928 TGTAAGACCATGTCTTGGATA-TCGGCATC-ATAATTGATTTCG
1 TGTAAGACCATGTCTGGGACAGT-GGCATCAATATTTGATTTCA
* *
27003970 TGTAAGACCCTGTCTGGGACAGTGGCATCAATATTTGATTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCAATATTTGATTTCA
*
27004013 TGTAAGACCACGTCTGGGAC-GTTGGCAT
1 TGTAAGACCATGTCTGGGACAG-TGGCAT
27004041 TGTACGAGCT
Statistics
Matches: 96, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
42 27 0.28
43 43 0.45
44 26 0.27
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCAATATTTGATTTCA
Found at i:27006852 original size:27 final size:27
Alignment explanation
Indices: 27006815--27006955 Score: 185
Period size: 27 Copynumber: 5.2 Consensus size: 27
27006805 CAATTTGATG
* *
27006815 AAATGACTGTTTTGCCCTTATGAGGTG
1 AAATGATTGTTTTGCCCTTATGAGGTA
** *
27006842 AAACAATTGTTTTGCCCTTATGTGGTA
1 AAATGATTGTTTTGCCCTTATGAGGTA
* * *
27006869 AAATGACTGTTCTGCCCTTATGTGGTA
1 AAATGATTGTTTTGCCCTTATGAGGTA
*
27006896 AAATGATTGTTTTGCCCTTCTGAGGTA
1 AAATGATTGTTTTGCCCTTATGAGGTA
27006923 AAATGATTGTTTTGCCCTTAT-ATGGTA
1 AAATGATTGTTTTGCCCTTATGA-GGTA
27006950 AAATGA
1 AAATGA
27006956 CTGAAATGCC
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.01
27 98 0.99
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.39
Consensus pattern (27 bp):
AAATGATTGTTTTGCCCTTATGAGGTA
Found at i:27006965 original size:27 final size:27
Alignment explanation
Indices: 27006815--27006993 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
27006805 CAATTTGATG
*
27006815 AAATGACTGTTTTGCCCTTATGA-GGTG
1 AAATGACTGTTTTGCCCTTAT-ATGGTA
** * *
27006842 AAACAATTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* *
27006869 AAATGACTGTTCTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* *
27006896 AAATGATTGTTTTGCCCTTCTGA-GGTA
1 AAATGACTGTTTTGCCCTTAT-ATGGTA
*
27006923 AAATGATTGTTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
*** *
27006950 AAATGACTGAAATGCCCTTACATGGTA
1 AAATGACTGTTTTGCCCTTATATGGTA
* * *
27006977 AATTGACTATTTGGCCC
1 AAATGACTGTTTTGCCC
27006994 CTATGTGAGG
Statistics
Matches: 124, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 123 0.99
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATATGGTA
Found at i:27006966 original size:81 final size:81
Alignment explanation
Indices: 27006815--27006998 Score: 233
Period size: 81 Copynumber: 2.3 Consensus size: 81
27006805 CAATTTGATG
* * **
27006815 AAATGACTGTTTTGCCCTTATGAGGTGAAACAATTGTTTTGCCCTTATGTGGTAAAATGACTGTT
1 AAATGACTGTTTTGCCCTTATGAGGTAAAACAATTGTTTTGCCCTTATATGGTAAAATGACTGAA
* **
27006880 CTGCCCTTATGTGGTA
66 ATGCCCTTACATGGTA
* * **
27006896 AAATGATTGTTTTGCCCTTCTGAGGTAAAATGATTGTTTTGCCCTTATATGGTAAAATGACTGAA
1 AAATGACTGTTTTGCCCTTATGAGGTAAAACAATTGTTTTGCCCTTATATGGTAAAATGACTGAA
27006961 ATGCCCTTACATGGTA
66 ATGCCCTTACATGGTA
* * * *
27006977 AATTGACTATTTGGCCCCTATG
1 AAATGACTGTTTTGCCCTTATG
27006999 TGAGGTATTT
Statistics
Matches: 86, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 86 1.00
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.38
Consensus pattern (81 bp):
AAATGACTGTTTTGCCCTTATGAGGTAAAACAATTGTTTTGCCCTTATATGGTAAAATGACTGAA
ATGCCCTTACATGGTA
Found at i:27008182 original size:37 final size:37
Alignment explanation
Indices: 27008132--27008210 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27008122 TTATTACGAA
* * *
27008132 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
27008169 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
27008206 GTCTT
1 GTCTT
27008211 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:27008403 original size:49 final size:49
Alignment explanation
Indices: 27008329--27008649 Score: 538
Period size: 49 Copynumber: 6.6 Consensus size: 49
27008319 CCCTTCGGGA
* * * * *
27008329 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * * *
27008376 CCTGTCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
*
27008425 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
27008474 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
27008523 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
27008572 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
27008621 CTTATCACATATATATACACTTTCACATT
1 CTTATCACATATATATACACTTTCACATT
27008650 NNNNNNNNNN
Statistics
Matches: 259, Mismatches: 13, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
47 8 0.03
48 1 0.00
49 250 0.97
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:27017894 original size:29 final size:29
Alignment explanation
Indices: 27017844--27018025 Score: 271
Period size: 29 Copynumber: 6.3 Consensus size: 29
27017834 TAAGTCCGCG
*
27017844 CACTTAGTG-TTATATAATCAAACTCGCA
1 CACTTAGTGCTTACATAATCAAACTCGCA
27017872 CACTTAGTGCTTACATAATCAAACTCGCA
1 CACTTAGTGCTTACATAATCAAACTCGCA
27017901 CACTTAGTGCTTACATAATCAAACTCGCA
1 CACTTAGTGCTTACATAATCAAACTCGCA
27017930 CACTTAGTGCTTACATAATCAAACTCGCA
1 CACTTAGTGCTTACATAATCAAACTCGCA
* *
27017959 CACTTAGTGC-TATATAATCAAACTTGCA
1 CACTTAGTGCTTACATAATCAAACTCGCA
* * * *
27017987 CACTTAGTGCTATGCA-ATTTAAACCCGCA
1 CACTTAGTGCT-TACATAATCAAACTCGCA
27018016 CACTTAGTGC
1 CACTTAGTGC
27018026 CAATCTCATG
Statistics
Matches: 142, Mismatches: 9, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
28 35 0.25
29 105 0.74
30 2 0.01
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CACTTAGTGCTTACATAATCAAACTCGCA
Found at i:27020072 original size:46 final size:46
Alignment explanation
Indices: 27020019--27020155 Score: 220
Period size: 46 Copynumber: 3.0 Consensus size: 46
27020009 TATATATACA
* * *
27020019 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATC
** *
27020065 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATC
27020111 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATAT
1 CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATAT
27020156 ATACACTTCC
Statistics
Matches: 82, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 82 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACATATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:27020198 original size:22 final size:22
Alignment explanation
Indices: 27020172--27020340 Score: 62
Period size: 22 Copynumber: 7.3 Consensus size: 22
27020162 TTCCACGTTC
27020172 ATCACATTGGCCATTCTGCCTT
1 ATCACATTGGCCATTCTGCCTT
* * * *
27020194 ATCACATATATGCACGTTC-ACATT
1 ATCACAT-T-GGC-CATTCTGCCTT
27020218 CATCACATTGGCCATT-TGGCCTT
1 -ATCACATTGGCCATTCT-GCCTT
*
27020241 ATCACATATATG-CATGT-T-CACATT
1 ATCACAT-T-GGCCAT-TCTGC-C-TT
*
27020265 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCTGCCTT
* * * *
27020288 ATCACATATATGCATATTC-ACATT
1 ATCACAT-T-GGC-CATTCTGCCTT
*
27020312 CATCACATTGGCCATTCAGCCTT
1 -ATCACATTGGCCATTCTGCCTT
27020335 ATCACA
1 ATCACA
27020341 CATATGCATG
Statistics
Matches: 108, Mismatches: 19, Indels: 40
0.65 0.11 0.24
Matches are distributed among these distances:
22 35 0.32
23 21 0.19
24 22 0.20
25 30 0.28
ACGTcount: A:0.27, C:0.28, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCTGCCTT
Found at i:27020200 original size:47 final size:47
Alignment explanation
Indices: 27020129--27020699 Score: 811
Period size: 47 Copynumber: 12.1 Consensus size: 47
27020119 ACATATTTCG
* * * * * * *
27020129 CATTAGCCATTCGGCTTTACCACATATATACACT-TCCACGTTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCA
* * *
27020176 CATTGGCCATTCTGCCTTATCACATATATGCACGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
27020223 CATTGGCCATTTGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
27020270 CATTGGCCATTCGGCCTTATCACATATATGCATATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
27020317 CATTGGCCATTCAGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
27020364 CATTAGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
27020411 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
27020458 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
*
27020505 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* *
27020552 CATTGGCCATTCGGCCTTATCTCACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
* * *
27020599 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ACATATGCATGTTCACATTCATCA
* * * * **
27020650 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
27020697 CAT
1 CAT
27020700 AAAATCCTAA
Statistics
Matches: 489, Mismatches: 30, Indels: 10
0.92 0.06 0.02
Matches are distributed among these distances:
47 447 0.91
49 2 0.00
51 40 0.08
ACGTcount: A:0.26, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
Found at i:27020458 original size:25 final size:24
Alignment explanation
Indices: 27020335--27020553 Score: 74
Period size: 25 Copynumber: 9.2 Consensus size: 24
27020325 ATTCAGCCTT
27020335 ATCACACATATGCATGTTCACATTC
1 ATCACACATA-GCATGTTCACATTC
* * *
27020360 ATCACA-TTAGCCA--TTCGGCCTT-
1 ATCACACATAG-CATGTTC-ACATTC
27020382 ATCACACATACGCATGTTCACATTC
1 ATCACACATA-GCATGTTCACATTC
* * * *
27020407 ATCACA-TTGGCCA--TTCGGCCTT-
1 ATCACACATAG-CATGTTC-ACATTC
27020429 ATCACACATACGCATGTTCACATTC
1 ATCACACATA-GCATGTTCACATTC
* * * *
27020454 ATCACA-TTGGCCA--TTCGGCCTT-
1 ATCACACATAG-CATGTTC-ACATTC
27020476 ATCACACATACGCATGTTCACATTC
1 ATCACACATA-GCATGTTCACATTC
* * * *
27020501 ATCACA-TTGGCCA--TTCGGCCTT-
1 ATCACACATAG-CATGTTC-ACATTC
27020523 ATCACACATACGCATGTTCACATTC
1 ATCACACATA-GCATGTTCACATTC
27020548 ATCACA
1 ATCACA
27020554 TTGGCCATTC
Statistics
Matches: 136, Mismatches: 30, Indels: 56
0.61 0.14 0.25
Matches are distributed among these distances:
22 36 0.26
23 29 0.21
24 29 0.21
25 42 0.31
ACGTcount: A:0.27, C:0.32, G:0.11, T:0.30
Consensus pattern (24 bp):
ATCACACATAGCATGTTCACATTC
Found at i:27030630 original size:43 final size:43
Alignment explanation
Indices: 27030505--27030646 Score: 132
Period size: 43 Copynumber: 3.3 Consensus size: 43
27030495 CGATATGTGT
* *
27030505 TTTCGTGTAAGAC-CTCGTCTGGGAC-GTTGGCATCAACT-TATGA
1 TTTCATGTAAGACTCT-GTCTGGGACAG-TGGCATCAA-TATTTGA
* * * *
27030548 TTTACGTGTAAGACTATGTCTGGGACA-TCAGTATC-ATATTTGA
1 TTT-CATGTAAGACTCTGTCTGGGACAGT-GGCATCAATATTTGA
*
27030591 TTTCATGTAAGACTCTGTCTGGGACAGTGGCATCAATATTTAA
1 TTTCATGTAAGACTCTGTCTGGGACAGTGGCATCAATATTTGA
*
27030634 TTACATGTAAGAC
1 TTTCATGTAAGAC
27030647 CACGTCTAGG
Statistics
Matches: 82, Mismatches: 10, Indels: 14
0.77 0.09 0.13
Matches are distributed among these distances:
42 26 0.32
43 32 0.39
44 23 0.28
45 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.35
Consensus pattern (43 bp):
TTTCATGTAAGACTCTGTCTGGGACAGTGGCATCAATATTTGA
Found at i:27030665 original size:43 final size:43
Alignment explanation
Indices: 27030510--27030666 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 43
27030500 TGTGTTTTCG
* * * *
27030510 TGTAAGACCTCGTCTGGGACGTTGGCATCAACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCAA-TAT-TTAATTACA
* * * ** * * *
27030554 TGTAAGACTATGTCTGGGACATCAGTATC-ATATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCAATATTTAATTACA
*
27030596 TGTAAGACTC-TGTCTGGGACAG-TGGCATCAATATTTAATTACA
1 TGTAAGAC-CACGTCTGGGAC-GTTGGCATCAATATTTAATTACA
*
27030639 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
27030667 TGTACAAGCT
Statistics
Matches: 86, Mismatches: 21, Indels: 13
0.72 0.17 0.11
Matches are distributed among these distances:
42 29 0.34
43 35 0.41
44 22 0.26
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCAATATTTAATTACA
Found at i:27038569 original size:21 final size:20
Alignment explanation
Indices: 27038544--27038583 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
27038534 TGAGTTGAAC
27038544 CGAGCAAAAATCAAGCTCAAA
1 CGAGCAAAAA-CAAGCTCAAA
* *
27038565 CGAGCTAAAACGAGCTCAA
1 CGAGCAAAAACAAGCTCAA
27038584 GTGAGTTGGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.47, C:0.25, G:0.17, T:0.10
Consensus pattern (20 bp):
CGAGCAAAAACAAGCTCAAA
Found at i:27043038 original size:42 final size:42
Alignment explanation
Indices: 27042992--27043071 Score: 115
Period size: 42 Copynumber: 1.9 Consensus size: 42
27042982 TTATTCGAGC
* *
27042992 CTCATATCGGTGCCATATCTCAGATATGGTCTTACATGAAGT
1 CTCATATCGATGCCATATCTCAGATATGATCTTACATGAAGT
* * *
27043034 CTCATATTGATGTCATATCTTAGATATGATCTTACATG
1 CTCATATCGATGCCATATCTCAGATATGATCTTACATG
27043072 TAATCTTAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.38
Consensus pattern (42 bp):
CTCATATCGATGCCATATCTCAGATATGATCTTACATGAAGT
Found at i:27049625 original size:19 final size:19
Alignment explanation
Indices: 27049601--27049639 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
27049591 AGGTCCGAGT
27049601 TCATAATGGATGCGATTCA
1 TCATAATGGATGCGATTCA
27049620 TCATAATGGATGCGATTCA
1 TCATAATGGATGCGATTCA
27049639 T
1 T
27049640 GTAACATCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33
Consensus pattern (19 bp):
TCATAATGGATGCGATTCA
Found at i:27050895 original size:13 final size:13
Alignment explanation
Indices: 27050877--27050911 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
27050867 AGCACATAGG
27050877 CGTGTGCCTTGGC
1 CGTGTGCCTTGGC
27050890 CGTGTGCCTTGGC
1 CGTGTGCCTTGGC
27050903 CGTGTGCCT
1 CGTGTGCCT
27050912 CTAAATGAGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.00, C:0.31, G:0.37, T:0.31
Consensus pattern (13 bp):
CGTGTGCCTTGGC
Found at i:27056550 original size:208 final size:208
Alignment explanation
Indices: 27056220--27057217 Score: 961
Period size: 208 Copynumber: 4.7 Consensus size: 208
27056210 TTAATGTAAT
* * *
27056220 TCAGCGAGCTGTTAGAAGTT-ACGATCTTAAATCAA-AGAACTCAAATAATTGGAAGTTGCGATC
1 TCAGTGAGCTGTTAGGAGTTGA-GATCTTAAATCAACA-AACTCAAATAATCGGAAGTTGCGATC
* *
27056283 TTAAATCAACTAGCCTTAATAATACCAACTATGAACGTAGGTCAGCAAGTTGTTAGGAGTTGTGA
64 TTAAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGTAAGTTGTTAGGAGTTGTGA
* * *
27056348 TATTAAATTAGCTAACTCAAATAATTGGACGCTACGATATTAAATCAACTAGCCTTAATAATATC
129 TATTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCAACTAGCCTTAATAATATC
*
27056413 AGCTGTGAACATAGG
194 AACTGTGAACATAGG
* * *
27056428 TCAGTGAGCTGTTAAGAGTTGAGATC-TAATATCAACGAACTCAAATAATTGGAAGTTGCGATCT
1 TCAGTGAGCTGTTAGGAGTTGAGATCTTAA-ATCAACAAACTCAAATAATCGGAAGTTGCGATCT
** *
27056492 TAAATCAACTAGCCTTAATAATACCAACTATGAATGTAGGTCAGTGAGTTGTTAGGAGTTGTGAT
65 TAAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGTAAGTTGTTAGGAGTTGTGAT
* * * ** *
27056557 ATTAAATTAGCAAACTCAAATAATTGGAGGCTGTGATATTAAATTAACTAGCCTTAATAATATCA
130 ATTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCAACTAGCCTTAATAATATCA
*
27056622 GCTGTGAACATAGG
195 ACTGTGAACATAGG
* * * * * *
27056636 ACAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATAGGATGTTGTGATTTT
1 TCAGTGAGCTGTTAGGAGTTGAGATCTTAAATCAACAAACTCAAATAATCGGAAGTTGCGATCTT
* *
27056701 AAATCAACTACCCTTAATAATATCAGCTGTGATAATAATATCAGCTGTGAACATAGGTCA-TCAA
66 AAATCAACTAGCCTTAATAATA-C--C------------A--A-CTATGAACATAGGTCAGT-AA
* * * * * * * *
27056765 GCTGCTCAGGAGTTGTGATTTTAAATCAGCTAACTCAAATAATCGAAAGTTGCGATCTTAAATCA
112 GTTG-TTAGGAGTTGTGATATTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCA
*
27056830 CCTAGCCTTAATAATATCAACTGTGAACATAGG
176 ACTAGCCTTAATAATATCAACTGTGAACATAGG
** * * * *
27056863 TCA-TCGAGCTGTTTAGGAGTTGTTATCTTAAATCAGCTAACTCAAATAATCGGAGGCTGCGATC
1 TCAGT-GAGCTG-TTAGGAGTTGAGATCTTAAATCAACAAACTCAAATAATCGGAAGTTGCGATC
* ** * * * * *
27056927 TTAAATCAACTAGCCTTAATAATATCAGTTGTGAACATAGGTTATTGAGCTAT-TTAGGAGTTGC
64 TTAAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGTAAG-T-TGTTAGGAGTTGT
* * * * * * *
27056991 GATCTTAAATCAACGAACTCGAATAATTGAAGGCTATGATCTTAAATCAGCTAGCCTTAATAATA
127 GATATTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCAACTAGCCTTAATAATA
* * * *
27057056 TTAATTATGAACGTAGG
192 TCAACTGTGAACATAGG
* * * *
27057073 TCAATGAGCTGTTAGGAGTT-ACGATCTTAAAT-AAGCAAACTCAAATAATCAGAGGTAGCGATC
1 TCAGTGAGCTGTTAGGAGTTGA-GATCTTAAATCAA-CAAACTCAAATAATCGGAAGTTGCGATC
** * * * * * *
27057136 TTAAATCAACTAGCCTTAATAATACCAGTTGTTAACATAGGTCA-TCGAGCTGTTTAAGAGTTGC
64 TTAAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGT-AAGTTG-TTAGGAGTTGT
*
27057200 GATCTTAAATCAGCTAAC
127 GATATTAAATCAGCTAAC
27057218 CTTAATAATA
Statistics
Matches: 669, Mismatches: 86, Indels: 69
0.81 0.10 0.08
Matches are distributed among these distances:
207 4 0.01
208 265 0.40
209 117 0.17
210 102 0.15
211 3 0.00
212 1 0.00
213 1 0.00
223 1 0.00
225 3 0.00
226 18 0.03
227 88 0.13
228 66 0.10
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (208 bp):
TCAGTGAGCTGTTAGGAGTTGAGATCTTAAATCAACAAACTCAAATAATCGGAAGTTGCGATCTT
AAATCAACTAGCCTTAATAATACCAACTATGAACATAGGTCAGTAAGTTGTTAGGAGTTGTGATA
TTAAATCAGCTAACTCAAATAATTGAAGGCTACGATATTAAATCAACTAGCCTTAATAATATCAA
CTGTGAACATAGG
Found at i:27056723 original size:104 final size:104
Alignment explanation
Indices: 27056220--27056732 Score: 607
Period size: 104 Copynumber: 4.9 Consensus size: 104
27056210 TTAATGTAAT
* * * *
27056220 TCAGCGAGCTGTTAGAAGTTACGATCTTAAATCAA-AGAACTCAAATAATTGGAAGTTGCGATCT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACA-AACTCAAATAATTGGAAGTTGCGATAT
* * * *
27056284 TAAATCAACTAGCCTTAATAATACCAACTATGAACGTAGG
65 TAAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
** * * * * * * * * *
27056324 TCAGCAAGTTGTTAGGAGTTGTGATATTAAATTAGCTAACTCAAATAATTGGACGCTACGATATT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATTGGAAGTTGCGATATT
27056389 AAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
66 AAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
* * * *
27056428 TCAGTGAGCTGTTAAGAGTTGAGATC-TAATATCAACGAACTCAAATAATTGGAAGTTGCGATCT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAA-ATCAACAAACTCAAATAATTGGAAGTTGCGATAT
* * * **
27056492 TAAATCAACTAGCCTTAATAATACCAACTATGAATGTAGG
65 TAAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
* * * * * * * *
27056532 TCAGTGAGTTGTTAGGAGTTGTGATATTAAATTAGCAAACTCAAATAATTGGAGGCTGTGATATT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATTGGAAGTTGCGATATT
*
27056597 AAATTAACTAGCCTTAATAATATCAGCTGTGAACATAGG
66 AAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
* * * * *
27056636 ACAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATAGGATGTTGTGATTTT
1 TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATTGGAAGTTGCGATATT
*
27056701 AAATCAACTACCCTTAATAATATCAGCTGTGA
66 AAATCAACTAGCCTTAATAATATCAGCTGTGA
27056733 TAATAATATC
Statistics
Matches: 342, Mismatches: 64, Indels: 6
0.83 0.16 0.01
Matches are distributed among these distances:
103 3 0.01
104 336 0.98
105 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.30
Consensus pattern (104 bp):
TCAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAACTCAAATAATTGGAAGTTGCGATATT
AAATCAACTAGCCTTAATAATATCAGCTGTGAACATAGG
Found at i:27056738 original size:18 final size:18
Alignment explanation
Indices: 27056715--27056750 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
27056705 CAACTACCCT
27056715 TAATAATATCAGCTGTGA
1 TAATAATATCAGCTGTGA
27056733 TAATAATATCAGCTGTGA
1 TAATAATATCAGCTGTGA
27056751 ACATAGGTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (18 bp):
TAATAATATCAGCTGTGA
Found at i:27056829 original size:123 final size:122
Alignment explanation
Indices: 27056611--27056855 Score: 330
Period size: 123 Copynumber: 2.0 Consensus size: 122
27056601 TAACTAGCCT
* *
27056611 TAATAATATCAGCTGTGAACATAGGACAGTGAGCTGTTAGGAGTTGCGATCTTAAATCAACAAAC
1 TAATAATATCAGCTGTGAACATAGGACAGTAAGCTGTCAGGAGTTGCGATCTTAAATCAACAAAC
* * * * *
27056676 TCAAATAATAGGATGTTGTGATTTTAAATCAACTACCCTTAATAATATCAGCTGTGA
66 TCAAATAATAGAAAGTTGCGATCTTAAATCAACTACCCTTAATAATATCAACTGTGA
* * * * *
27056733 TAATAATATCAGCTGTGAACATAGGTCA-TCAAGCTGCTCAGGAGTTGTGATTTTAAATCAGCTA
1 TAATAATATCAGCTGTGAACATAGGACAGT-AAGCTG-TCAGGAGTTGCGATCTTAAATCAACAA
* * *
27056797 ACTCAAATAATCGAAAGTTGCGATCTTAAATCACCTAGCCTTAATAATATCAACTGTGA
64 ACTCAAATAATAGAAAGTTGCGATCTTAAATCAACTACCCTTAATAATATCAACTGTGA
27056856 ACATAGGTCA
Statistics
Matches: 106, Mismatches: 15, Indels: 3
0.85 0.12 0.02
Matches are distributed among these distances:
121 1 0.01
122 32 0.30
123 73 0.69
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.30
Consensus pattern (122 bp):
TAATAATATCAGCTGTGAACATAGGACAGTAAGCTGTCAGGAGTTGCGATCTTAAATCAACAAAC
TCAAATAATAGAAAGTTGCGATCTTAAATCAACTACCCTTAATAATATCAACTGTGA
Found at i:27056924 original size:105 final size:105
Alignment explanation
Indices: 27056733--27057217 Score: 609
Period size: 105 Copynumber: 4.6 Consensus size: 105
27056723 TCAGCTGTGA
* * * * * *
27056733 TAATAATATCAGCTGTGAACATAGGTCATCAAGCTGCTCAGGAGTTGTGATTTTAAATCAGCTAA
1 TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
* * *
27056798 CTCAAATAATCGAAAGTTGCGATCTTAAATCACCTAGCCT
66 CTCAAATAATCGAAGGCTGCGATCTTAAATCAACTAGCCT
** **
27056838 TAATAATATCAACTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGTTATCTTAAATCAGCTAA
1 TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
*
27056903 CTCAAATAATCGGAGGCTGCGATCTTAAATCAACTAGCCT
66 CTCAAATAATCGAAGGCTGCGATCTTAAATCAACTAGCCT
* * * * *
27056943 TAATAATATCAGTTGTGAACATAGGTTATTGAGCTATTTAGGAGTTGCGATCTTAAATCAACGAA
1 TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
* * ** *
27057008 CTCGAATAATTGAAGGCTATGATCTTAAATCAGCTAGCCT
66 CTCAAATAATCGAAGGCTGCGATCTTAAATCAACTAGCCT
* * * * * * *
27057048 TAATAATATTAATTATGAACGTAGGTCAAT-GAGCTG-TTAGGAGTTACGATCTTAAATAAGCAA
1 TAATAATATCAGTTGTGAACATAGGTC-ATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTA
27057111 ACTCAAATAATC-AGAGG-TAGCGATCTTAAATCAACTAGCCT
65 ACTCAAATAATCGA-AGGCT-GCGATCTTAAATCAACTAGCCT
* * *
27057152 TAATAATACCAGTTGTTAACATAGGTCATCGAGCTGTTTAAGAGTTGCGATCTTAAATCAGCTAA
1 TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
27057217 C
66 C
27057218 CTTAATAATA
Statistics
Matches: 325, Mismatches: 50, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
103 4 0.01
104 82 0.25
105 237 0.73
106 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (105 bp):
TAATAATATCAGTTGTGAACATAGGTCATCGAGCTGTTTAGGAGTTGCGATCTTAAATCAGCTAA
CTCAAATAATCGAAGGCTGCGATCTTAAATCAACTAGCCT
Found at i:27057249 original size:68 final size:68
Alignment explanation
Indices: 27057130--27057282 Score: 177
Period size: 68 Copynumber: 2.3 Consensus size: 68
27057120 ATCAGAGGTA
* ** * * * * * *
27057130 GCGATCTTAAATCAACTAGCCTTAATAATACCAGTTGTTAACATAGGTCATCGAGCTGTTTAAGA
1 GCGATCTTAAATCAACTAACCTTAATAATACCAACTGTGAACACAGATCATCAAGCTATGTAAGA
27057195 GTT
66 GTT
* * *
27057198 GCGATCTTAAATCAGCTAACCTTAATAATATCAACTGTGAACGCAGATCATCAAGCTATGTAAGA
1 GCGATCTTAAATCAACTAACCTTAATAATACCAACTGTGAACACAGATCATCAAGCTATGTAAGA
27057263 GTT
66 GTT
27057266 --G-TCTTAAATCAACTAAC
1 GCGATCTTAAATCAACTAAC
27057283 TCAAATAATT
Statistics
Matches: 72, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
65 15 0.21
66 1 0.01
68 56 0.78
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (68 bp):
GCGATCTTAAATCAACTAACCTTAATAATACCAACTGTGAACACAGATCATCAAGCTATGTAAGA
GTT
Found at i:27063523 original size:16 final size:16
Alignment explanation
Indices: 27063504--27063536 Score: 57
Period size: 16 Copynumber: 2.0 Consensus size: 16
27063494 TCGCTTTTTA
27063504 TTTTCTTCCTCTTTTCT
1 TTTTC-TCCTCTTTTCT
27063521 TTTTCTCCTCTTTTCT
1 TTTTCTCCTCTTTTCT
27063537 CTTGTAATTG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTCTCCTCTTTTCT
Found at i:27068052 original size:18 final size:19
Alignment explanation
Indices: 27068024--27068059 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
27068014 AAATAATTTT
*
27068024 TTTTCAAATTTTAAAATAA
1 TTTTCAAATTTAAAAATAA
27068043 TTTT-AAATTTAAAAATA
1 TTTTCAAATTTAAAAATA
27068060 TATAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
TTTTCAAATTTAAAAATAA
Found at i:27068065 original size:10 final size:10
Alignment explanation
Indices: 27068052--27068086 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
27068042 ATTTTAAATT
27068052 TAAAAATATA
1 TAAAAATATA
*
27068062 TAAAAAT-TC
1 TAAAAATATA
27068071 TAAAAATATA
1 TAAAAATATA
27068081 TAAAAA
1 TAAAAA
27068087 AGTTAATTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.29
Consensus pattern (10 bp):
TAAAAATATA
Found at i:27068076 original size:19 final size:18
Alignment explanation
Indices: 27068047--27068086 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
27068037 AAATAATTTT
27068047 AAATTTAAAAATATATAA
1 AAATTTAAAAATATATAA
27068065 AAATTCTAAAAATATATAA
1 AAATT-TAAAAATATATAA
27068084 AAA
1 AAA
27068087 AGTTAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (18 bp):
AAATTTAAAAATATATAA
Found at i:27081817 original size:45 final size:45
Alignment explanation
Indices: 27081747--27081964 Score: 203
Period size: 45 Copynumber: 4.8 Consensus size: 45
27081737 CATTGATTTG
*
27081747 AGAAACGAGAAAGACCAT-GATTGAAAGATATTATGGCATTATACC
1 AGAAACGAGAAAGACCATAG-TTGAAAGATACTATGGCATTATACC
* * * *
27081792 CGAAATGAGAAAGACAATAGTTGAAAGATACTATGGCATTAAACC
1 AGAAACGAGAAAGACCATAGTTGAAAGATACTATGGCATTATACC
* * * * *
27081837 AG-AACGGGTAAGACCCTAGTTGAAAGATACTACGGCACTATACC
1 AGAAACGAGAAAGACCATAGTTGAAAGATACTATGGCATTATACC
* * * **
27081881 TGAAGATGA-ATAAGACCATAGTTGAAAGATACTATGGCATTAAAGG
1 AGAA-ACGAGA-AAGACCATAGTTGAAAGATACTATGGCATTATACC
* *
27081927 TG-AATGA-ATCAAGACCATAGTTGAAAGATACTATGGCA
1 AGAAACGAGA--AAGACCATAGTTGAAAGATACTATGGCA
27081965 CCACCTTGAG
Statistics
Matches: 143, Mismatches: 25, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
44 40 0.28
45 69 0.48
46 34 0.24
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.22
Consensus pattern (45 bp):
AGAAACGAGAAAGACCATAGTTGAAAGATACTATGGCATTATACC
Found at i:27081914 original size:90 final size:90
Alignment explanation
Indices: 27081757--27081965 Score: 262
Period size: 90 Copynumber: 2.3 Consensus size: 90
27081747 AGAAACGAGA
* *
27081757 AAGACCAT-GATTGAAAGATATTATGGCATTATACCCGAAATGAGAAAGACAATAGTTGAAAGAT
1 AAGACCATAG-TTGAAAGATACTATGGCACTATACCCGAAATGAGAAAGACAATAGTTGAAAGAT
**
27081821 ACTATGGCATTAAACCAGAACGGGT-
65 ACTATGGCATTAAACCAGAACGAATC
* * * *
27081846 AAGACCCTAGTTGAAAGATACTACGGCACTATACCTGAAGATGA-ATAAGACCATAGTTGAAAGA
1 AAGACCATAGTTGAAAGATACTATGGCACTATACCCGAA-ATGAGA-AAGACAATAGTTGAAAGA
*** *
27081910 TACTATGGCATTAAAGGTGAATGAATC
64 TACTATGGCATTAAACCAGAACGAATC
27081937 AAGACCATAGTTGAAAGATACTATGGCAC
1 AAGACCATAGTTGAAAGATACTATGGCAC
27081966 CACCTTGAGA
Statistics
Matches: 102, Mismatches: 14, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
89 33 0.32
90 42 0.41
91 27 0.26
ACGTcount: A:0.42, C:0.15, G:0.21, T:0.22
Consensus pattern (90 bp):
AAGACCATAGTTGAAAGATACTATGGCACTATACCCGAAATGAGAAAGACAATAGTTGAAAGATA
CTATGGCATTAAACCAGAACGAATC
Found at i:27081985 original size:90 final size:89
Alignment explanation
Indices: 27081802--27082010 Score: 233
Period size: 90 Copynumber: 2.3 Consensus size: 89
27081792 CGAAATGAGA
* ** *
27081802 AAGACAATAGTTGAAAGATACTATGGCATTAAACCAGAACGGGTAAGACCCTAGTTGAAAGATAC
1 AAGACCATAGTTGAAAGATACTATGGCATTAAACCAGAACGAATAAGACCATAGTTGAAAGATAC
*
27081867 TACGGCACTATACCTGAAGATGAAT
66 TACGGCAC-ACACCTGAAGATGAAT
*** *
27081892 AAGACCATAGTTGAAAGATACTATGGCATTAAAGGTGAATGAATCAAGACCATAGTTGAAAGATA
1 AAGACCATAGTTGAAAGATACTATGGCATTAAACCAGAACGAAT-AAGACCATAGTTGAAAGATA
* **
27081957 CTATGGCAC-CACCTTG-AGATTGTGT
65 CTACGGCACACACC-TGAAGA-TGAAT
* * *
27081982 AAGACCCTGGTTGAAAGATACCATGGCAT
1 AAGACCATAGTTGAAAGATACTATGGCAT
27082011 CTTCTGAACA
Statistics
Matches: 101, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
89 6 0.06
90 68 0.67
91 27 0.27
ACGTcount: A:0.39, C:0.16, G:0.22, T:0.23
Consensus pattern (89 bp):
AAGACCATAGTTGAAAGATACTATGGCATTAAACCAGAACGAATAAGACCATAGTTGAAAGATAC
TACGGCACACACCTGAAGATGAAT
Found at i:27081986 original size:45 final size:43
Alignment explanation
Indices: 27081757--27082009 Score: 163
Period size: 45 Copynumber: 5.7 Consensus size: 43
27081747 AGAAACGAGA
* * * *
27081757 AAGACCAT-GATTGAAAGATATTATGGCATTATACCCGAAATGAGA-
1 AAGACCATAG-TTGAAAGATACTATGGCA-CA-ACCTGAGATGA-AT
* * * * **
27081802 AAGACAATAGTTGAAAGATACTATGGCATTAAACCAGA-ACGGGT
1 AAGACCATAGTTGAAAGATACTATGGCA--CAACCTGAGATGAAT
* *
27081846 AAGACCCTAGTTGAAAGATACTACGGCACTATACCTGAAGATGAAT
1 AAGACCATAGTTGAAAGATACTATGGCAC-A-ACCTG-AGATGAAT
* **
27081892 AAGACCATAGTTGAAAGATACTATGGCATTAAAGGTGA-ATGAAT
1 AAGACCATAGTTGAAAGATACTATGGCA--CAACCTGAGATGAAT
* **
27081936 CAAGACCATAGTTGAAAGATACTATGGCACCACCTTGAGATTGTGT
1 -AAGACCATAGTTGAAAGATACTATGGCACAACC-TGAGA-TGAAT
* * *
27081982 AAGACCCTGGTTGAAAGATACCATGGCA
1 AAGACCATAGTTGAAAGATACTATGGCA
27082010 TCTTCTGAAC
Statistics
Matches: 166, Mismatches: 29, Indels: 26
0.75 0.13 0.12
Matches are distributed among these distances:
43 2 0.01
44 40 0.24
45 85 0.51
46 38 0.23
47 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.22, T:0.23
Consensus pattern (43 bp):
AAGACCATAGTTGAAAGATACTATGGCACAACCTGAGATGAAT
Found at i:27087125 original size:29 final size:30
Alignment explanation
Indices: 27087078--27087145 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
27087068 TGGCCCAAGA
* *
27087078 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
27087108 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
27087138 GCAAATAT
1 GTAAATAT
27087146 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:27088559 original size:3 final size:3
Alignment explanation
Indices: 27088551--27088576 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
27088541 GTGGAATGGA
27088551 GAG GAG GAG GAG GAG GAG GAG GAG GA
1 GAG GAG GAG GAG GAG GAG GAG GAG GA
27088577 AAATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.65, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:27089543 original size:46 final size:46
Alignment explanation
Indices: 27089270--27089533 Score: 467
Period size: 46 Copynumber: 5.7 Consensus size: 46
27089260 AGTGTGCTCT
*
27089270 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAT
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
27089316 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
27089362 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
27089408 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
27089454 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
* * * *
27089500 ATGACA-GAAAATGAGTAAGACCATAGTTGAAAGA
1 CTGATATG-AAATGTGTAAGACCATGGTTGAAAGA
27089534 CATTATGGCA
Statistics
Matches: 212, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
45 1 0.00
46 211 1.00
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:27089850 original size:16 final size:17
Alignment explanation
Indices: 27089829--27089861 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
27089819 ATGATGGAGC
27089829 ATGAAAT-ATTGATATA
1 ATGAAATGATTGATATA
27089845 ATGAAATGATTGATATA
1 ATGAAATGATTGATATA
27089862 TACTTATGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.48, C:0.00, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGAAATGATTGATATA
Found at i:27090593 original size:24 final size:23
Alignment explanation
Indices: 27090560--27090604 Score: 72
Period size: 24 Copynumber: 1.9 Consensus size: 23
27090550 TTAATAGACT
*
27090560 CGTGTGAAGCGACAAACGAAAACC
1 CGTGTCAAGCGACAAAC-AAAACC
27090584 CGTGTCAAGCGACAAACAAAA
1 CGTGTCAAGCGACAAACAAAA
27090605 GAAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.44, C:0.24, G:0.22, T:0.09
Consensus pattern (23 bp):
CGTGTCAAGCGACAAACAAAACC
Found at i:27100182 original size:20 final size:21
Alignment explanation
Indices: 27100157--27100202 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
27100147 TAAAATATAA
27100157 ATTTTGGAATTTTT-ATAAA-T
1 ATTTTGGAATTTTTGA-AAATT
27100177 ATTTT-GAATTTTTGAAAATT
1 ATTTTGGAATTTTTGAAAATT
27100197 ATTTTG
1 ATTTTG
27100203 ATTTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.57
Consensus pattern (21 bp):
ATTTTGGAATTTTTGAAAATT
Found at i:27100203 original size:20 final size:19
Alignment explanation
Indices: 27100152--27100208 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
27100142 TTTTTTAAAA
*
27100152 TATAAAT-TTTGGAATTTT
1 TATAAATATTTTGAATTTT
27100170 TATAAATATTTTGAATTTT
1 TATAAATATTTTGAATTTT
27100189 TGA-AAATTATTTTG-ATTTT
1 T-ATAAA-TATTTTGAATTTT
27100208 T
1 T
27100209 TTAATTTTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
18 7 0.20
19 20 0.57
20 8 0.23
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (19 bp):
TATAAATATTTTGAATTTT
Found at i:27103633 original size:27 final size:27
Alignment explanation
Indices: 27103602--27103779 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
27103592 TAAATTGTAC
27103602 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
27103629 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27103655 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
27103683 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
27103711 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
27103738 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
27103765 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
27103780 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:27103716 original size:82 final size:81
Alignment explanation
Indices: 27103603--27103758 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
27103593 AAATTGTACA
* *
27103603 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
27103667 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
27103684 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
27103749 TGCGAGTTGA
65 TGCGAATTGA
27103759 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:27103770 original size:82 final size:81
Alignment explanation
Indices: 27103599--27103779 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
27103589 GATTAAATTG
* *
27103599 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
27103664 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
27103680 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
27103744 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
27103762 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
27103780 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:27105619 original size:171 final size:171
Alignment explanation
Indices: 27105330--27105668 Score: 615
Period size: 171 Copynumber: 2.0 Consensus size: 171
27105320 ATTGCCAACA
*
27105330 GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTGAGCAATATTGTGAATGAGTGC
1 GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTAAGCAATATTGTGAATGAGTGC
** * * *
27105395 ATCGTGGTGTTACCGTATCCTCCAGACCTGCATAATAATTTTTGACGTTCAATGCAAAATATGGT
66 ATCACGGTGTTAACGTATCCTCCAGACCTGCATAATAATTTTCGACATTCAATGCAAAATATGGT
*
27105460 AGAAATGATGCTGAAACATAATTCAAATATTGATTGGGATG
131 AGAAATGATGCTGAAACATAATTCAAATATCGATTGGGATG
27105501 GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTAAGCAATATTGTGAATGAGTGC
1 GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTAAGCAATATTGTGAATGAGTGC
27105566 ATCACGGTGTTAACGTATCCTCCAGACCTGCATAATAATTTTCGACATTCAATGCAAAATATGGT
66 ATCACGGTGTTAACGTATCCTCCAGACCTGCATAATAATTTTCGACATTCAATGCAAAATATGGT
27105631 AGAAATGATGCTGAAACATAATTCAAATATCGATTGGG
131 AGAAATGATGCTGAAACATAATTCAAATATCGATTGGG
27105669 GTTTCATGGG
Statistics
Matches: 161, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
171 161 1.00
ACGTcount: A:0.32, C:0.17, G:0.24, T:0.28
Consensus pattern (171 bp):
GCAATGGCATCATCGAGGGTGATGGGGCCACTGTCAAGTCACTAAGCAATATTGTGAATGAGTGC
ATCACGGTGTTAACGTATCCTCCAGACCTGCATAATAATTTTCGACATTCAATGCAAAATATGGT
AGAAATGATGCTGAAACATAATTCAAATATCGATTGGGATG
Found at i:27118930 original size:15 final size:14
Alignment explanation
Indices: 27118910--27118957 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
27118900 CTCATTTTCA
27118910 TCTTTTTCTTTTATT
1 TCTTTTTCTTTT-TT
*
27118925 TCTTTTTCTTTTTC
1 TCTTTTTCTTTTTT
*
27118939 TCTCATTTCTTTTTT
1 TCT-TTTTCTTTTTT
27118954 TCTT
1 TCTT
27118958 CTCTCAATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (14 bp):
TCTTTTTCTTTTTT
Found at i:27118962 original size:22 final size:21
Alignment explanation
Indices: 27118910--27118968 Score: 75
Period size: 21 Copynumber: 2.8 Consensus size: 21
27118900 CTCATTTTCA
* *
27118910 TCTTTTTCTTTTATTTCTTTT
1 TCTTTTTCTCTCATTTCTTTT
27118931 TCTTTTTCTCTCATTTCTTTT
1 TCTTTTTCTCTCATTTCTTTT
*
27118952 T-TTCTTCTCTCAATTTC
1 TCTTTTTCTCTC-ATTTC
27118969 ATTCAAGATT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
20 9 0.26
21 25 0.74
ACGTcount: A:0.07, C:0.22, G:0.00, T:0.71
Consensus pattern (21 bp):
TCTTTTTCTCTCATTTCTTTT
Found at i:27122764 original size:56 final size:56
Alignment explanation
Indices: 27122697--27122928 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
27122687 TATTAGTTTA
* *
27122697 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
27122753 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
27122809 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
27122865 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
27122921 TTGCCCAT
1 TTGCCCAT
27122929 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:27129550 original size:33 final size:33
Alignment explanation
Indices: 27129524--27129676 Score: 252
Period size: 33 Copynumber: 4.6 Consensus size: 33
27129514 CCTTTCCAAG
*
27129524 TGGTACACACAAAGTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
*
27129557 TGGTATACACAAAGTATACCTTTCCTTTTTATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
* *
27129590 TGATATACACAAAGTATACCTTCCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
* *
27129623 TGGTATACATAAATTATACCTTTCCTTTTCATA
1 TGGTATACACAAAGTATACCTTTCCTTTTCATA
27129656 TGGTATACACAAAGTATACCT
1 TGGTATACACAAAGTATACCT
27129677 AACATTTCCA
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 109 1.00
ACGTcount: A:0.32, C:0.21, G:0.08, T:0.39
Consensus pattern (33 bp):
TGGTATACACAAAGTATACCTTTCCTTTTCATA
Found at i:27129721 original size:32 final size:33
Alignment explanation
Indices: 27129662--27129726 Score: 78
Period size: 32 Copynumber: 2.0 Consensus size: 33
27129652 CATATGGTAT
*
27129662 ACACAAAGTATACCTAACATTTCCAAG-TGTAC
1 ACACAAAGTATACATAACATTTCCAAGTTGTAC
* * * *
27129694 ACACAAAGTGTACATAGCCTTTTCAAGTTGTAC
1 ACACAAAGTATACATAACATTTCCAAGTTGTAC
27129727 CATTTGGGTA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
32 22 0.81
33 5 0.19
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.28
Consensus pattern (33 bp):
ACACAAAGTATACATAACATTTCCAAGTTGTAC
Found at i:27137268 original size:99 final size:99
Alignment explanation
Indices: 27137130--27137353 Score: 353
Period size: 99 Copynumber: 2.3 Consensus size: 99
27137120 GAGGTGTACA
* * *
27137130 TTCCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAAGTATACC
1 TTCCTTTTCAAGTGATATACACAAAGTATACCTTCCCTTTTCATATGGTATACACAAAGTATACA
27137195 TTTCCTTTTCATATGATATACACAAAGTATACCT
66 TTTCCTTTTCATATGATATACACAAAGTATACCT
27137229 TTCCTTTTCATA-TGATATACACAAAGTATACCTTCCCTTTTCATATGGTATACACAAAGTATAC
1 TTCCTTTTCA-AGTGATATACACAAAGTATACCTTCCCTTTTCATATGGTATACACAAAGTATAC
*
27137293 ATTTCCTTTTCATATGGTATACACAAAGTATACCT
65 ATTTCCTTTTCATATGATATACACAAAGTATACCT
** * *
27137328 AACCTTTCCAAGTG-TACACACAAAGT
1 TTCCTTTTCAAGTGATATACACAAAGT
27137354 GTACATAGCC
Statistics
Matches: 115, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
98 12 0.10
99 102 0.89
100 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.37
Consensus pattern (99 bp):
TTCCTTTTCAAGTGATATACACAAAGTATACCTTCCCTTTTCATATGGTATACACAAAGTATACA
TTTCCTTTTCATATGATATACACAAAGTATACCT
Found at i:27137334 original size:33 final size:33
Alignment explanation
Indices: 27137130--27137327 Score: 344
Period size: 33 Copynumber: 6.0 Consensus size: 33
27137120 GAGGTGTACA
27137130 TTCCTTTTCA-AGTGGTATACACAAAGTATACCT
1 TTCCTTTTCATA-TGGTATACACAAAGTATACCT
27137163 TTCCTTTTCATATGGTATACACAAAGTATACCT
1 TTCCTTTTCATATGGTATACACAAAGTATACCT
*
27137196 TTCCTTTTCATATGATATACACAAAGTATACCT
1 TTCCTTTTCATATGGTATACACAAAGTATACCT
*
27137229 TTCCTTTTCATATGATATACACAAAGTATACCT
1 TTCCTTTTCATATGGTATACACAAAGTATACCT
* *
27137262 TCCCTTTTCATATGGTATACACAAAGTATACAT
1 TTCCTTTTCATATGGTATACACAAAGTATACCT
27137295 TTCCTTTTCATATGGTATACACAAAGTATACCT
1 TTCCTTTTCATATGGTATACACAAAGTATACCT
27137328 AACCTTTCCA
Statistics
Matches: 158, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
33 157 0.99
34 1 0.01
ACGTcount: A:0.32, C:0.21, G:0.09, T:0.38
Consensus pattern (33 bp):
TTCCTTTTCATATGGTATACACAAAGTATACCT
Found at i:27137334 original size:66 final size:65
Alignment explanation
Indices: 27137132--27137369 Score: 325
Period size: 66 Copynumber: 3.6 Consensus size: 65
27137122 GGTGTACATT
*
27137132 CCTTTTCAAGTGGTATACACAAAGTATACCTTTCCTTTTCATATGGTATACACAAAGTATACCTT
1 CCTTTTCAA-TGGTATACACAAAGTATACATTTCCTTTTCATATGGTATACACAAAGTATACCTT
*
27137197 T
65 A
* * *
27137198 CCTTTTCATATGATATACACAAAGTATACCTTTCCTTTTCATATGATATACACAAAGTATACCTT
1 CCTTTTCA-ATGGTATACACAAAGTATACATTTCCTTTTCATATGGTATACACAAAGTATACCTT
*
27137263 C
65 A
*
27137264 CCTTTTCATATGGTATACACAAAGTATACATTTCCTTTTCATATGGTATACACAAAGTATACCTA
1 CCTTTTCA-ATGGTATACACAAAGTATACATTTCCTTTTCATATGGTATACACAAAGTATACCTT
27137329 A
65 A
* * * **
27137330 CCTTTCCAA-GTGTACACACAAAGTGTACATAGCCTTTTCA
1 CCTTTTCAATG-GTATACACAAAGTATACATTTCCTTTTCA
27137370 AGTTGTACCA
Statistics
Matches: 157, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
64 1 0.01
65 26 0.17
66 129 0.82
67 1 0.01
ACGTcount: A:0.32, C:0.22, G:0.09, T:0.36
Consensus pattern (65 bp):
CCTTTTCAATGGTATACACAAAGTATACATTTCCTTTTCATATGGTATACACAAAGTATACCTTA
Found at i:27137366 original size:32 final size:33
Alignment explanation
Indices: 27137280--27137377 Score: 92
Period size: 32 Copynumber: 3.0 Consensus size: 33
27137270 CATATGGTAT
** * * *
27137280 ACACAAAGTATACATTTCCTTTTCATA-TGGTAT
1 ACACAAAGTATACATAACCTTTCCA-AGTTGTAC
*
27137313 ACACAAAGTATACCTAACCTTTCCAAG-TGTAC
1 ACACAAAGTATACATAACCTTTCCAAGTTGTAC
* * *
27137345 ACACAAAGTGTACATAGCCTTTTCAAGTTGTAC
1 ACACAAAGTATACATAACCTTTCCAAGTTGTAC
27137378 CATTTGGGTA
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
32 27 0.51
33 26 0.49
ACGTcount: A:0.35, C:0.22, G:0.11, T:0.32
Consensus pattern (33 bp):
ACACAAAGTATACATAACCTTTCCAAGTTGTAC
Found at i:27137607 original size:23 final size:23
Alignment explanation
Indices: 27137577--27137622 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
27137567 TATAAGTCAC
27137577 AAATCAATAATTGTTCATTACAT
1 AAATCAATAATTGTTCATTACAT
27137600 AAATCAATAATTGTTCATTACAT
1 AAATCAATAATTGTTCATTACAT
27137623 GTACTTACCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.39
Consensus pattern (23 bp):
AAATCAATAATTGTTCATTACAT
Found at i:27139654 original size:49 final size:48
Alignment explanation
Indices: 27139598--27139809 Score: 184
Period size: 49 Copynumber: 4.5 Consensus size: 48
27139588 GTTGATATCG
27139598 TGTCCCAGACAGGTCTTACACTAACTTTCATATATCGAGGCCGATGCCA
1 TGTCCCAGACAGGTCTTACACTAACTTT-ATATATCGAGGCCGATGCCA
** * * * *
27139647 TGTCCCAGACAGGTCTTACACTGGCTCTTATCTATCGATGTCAATGCCA
1 TGTCCCAGACAGGTCTTACACTAACT-TTATATATCGAGGCCGATGCCA
* * * * * * * *
27139696 TGTCCCAGATAGGTCTTACACTGAC---ACACAAC-AAGCTGACGCCA
1 TGTCCCAGACAGGTCTTACACTAACTTTATATATCGAGGCCGATGCCA
* * **
27139740 TGTCCCAGACAGGTTTTACACTAGCTTGTATATCCCGAGGCCGATG-CA
1 TGTCCCAGACAGGTCTTACACTAACTT-TATATATCGAGGCCGATGCCA
27139788 TGTCCCAGACATGG-CTTACACT
1 TGTCCCAGACA-GGTCTTACACT
27139810 GGCTCACATA
Statistics
Matches: 127, Mismatches: 29, Indels: 15
0.74 0.17 0.09
Matches are distributed among these distances:
44 28 0.22
45 3 0.02
48 23 0.18
49 71 0.56
50 2 0.02
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (48 bp):
TGTCCCAGACAGGTCTTACACTAACTTTATATATCGAGGCCGATGCCA
Found at i:27151929 original size:33 final size:33
Alignment explanation
Indices: 27151899--27152293 Score: 481
Period size: 33 Copynumber: 12.0 Consensus size: 33
27151889 ATGGTACAAC
* * *
27151899 TTGAAAAGGTTATGTACACTTTGTGTGTA-CAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
* *
27151931 TTGGAAAGGTTAGGCATACTTTGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
* *
27151964 ATGAAAAGGTTAGGTATACTTTGTTTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
** * * *
27151997 TTGAAAAGGAAATGTATACTTTATGTATACAAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
*
27152030 ATGAAAAGGTTAGG--TACTTTGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
**** *
27152061 TTGAAAAAAAAAAGGTATACTTAGTGTATACCAT
1 TTG-AAAAGGTTAGGTATACTTTGTGTATACCAT
* *
27152095 ATGAAAAGGTTAGGTATACTTTGTGTGTACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
**
27152128 TTGAAAAGGAAAGGTATACTTTGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
*
27152161 ATGAAAAGGTTAGGTATACTTTGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
** *
27152194 TTGAAAAGGAAAGGTATACTTTGTGTCTACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
*
27152227 ATGAAAAGGTTAGGTATACTTTGTGTATACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
** * *
27152260 TTGAAAAGGAAAAGTATACTTTGTGTGTACCAT
1 TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
27152293 T
1 T
27152294 CGGAAAGAAA
Statistics
Matches: 304, Mismatches: 55, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
31 17 0.06
32 31 0.10
33 238 0.78
34 18 0.06
ACGTcount: A:0.34, C:0.09, G:0.21, T:0.36
Consensus pattern (33 bp):
TTGAAAAGGTTAGGTATACTTTGTGTATACCAT
Found at i:27152018 original size:66 final size:66
Alignment explanation
Indices: 27151900--27152292 Score: 594
Period size: 66 Copynumber: 6.0 Consensus size: 66
27151890 TGGTACAACT
* * * * ** *
27151900 TGAAAAGGTTATGTACACTTTGTGTGTA-CATTTGGAAAGGTTAGGCATACTTTGTGTATACCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
27151964 A
66 A
* * * *
27151965 TGAAAAGGTTAGGTATACTTTGTTTATACCATTTGAAAAGGAAATGTATACTTTATGTATACAAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
27152030 A
66 A
** *
27152031 TGAAAAGGTTAGG--TACTTTGTGTATACCATTTGAAAAAAAAAAGGTATACTTAGTGTATACCA
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTG-AAAAGGAAAGGTATACTTTGTGTATACCA
27152094 TA
65 TA
*
27152096 TGAAAAGGTTAGGTATACTTTGTGTGTACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
27152161 A
66 A
*
27152162 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTCTACCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
27152227 A
66 A
* *
27152228 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAAGTATACTTTGTGTGTACCAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
27152293 TCGGAAAGAA
Statistics
Matches: 298, Mismatches: 26, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
64 19 0.06
65 62 0.21
66 198 0.66
67 19 0.06
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (66 bp):
TGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGGTATACTTTGTGTATACCAT
A
Found at i:27152081 original size:131 final size:131
Alignment explanation
Indices: 27151946--27152281 Score: 557
Period size: 131 Copynumber: 2.6 Consensus size: 131
27151936 AAGGTTAGGC
* *
27151946 ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTTTATACCATTTGAAAAGGAAATG
1 ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAAG
27152011 TATACTTTATGTATACAATATGAAAAGGTTAGG-TACTTTGTGTATACCATTTGAAAAAAAAAAG
66 TATACTTTATGTATACAATATGAAAAGGTTAGGATACTTTGTGTATACCATTTG-AAAAAAAAAG
27152075 GT
130 GT
* * *
27152077 ATACTTAGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTGTACCATTTGAAAAGGAAAGG
1 ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAAG
* * **
27152142 TATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAG
66 TATACTTTATGTATACAATATGAAAAGGTTAGG-ATACTTTGTGTATACCATTTGAAAAAAAAAG
27152207 GT
130 GT
*
27152209 ATACTTTGTGTCTACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAAG
1 ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAAG
27152274 TATACTTT
66 TATACTTT
27152282 GTGTGTACCA
Statistics
Matches: 191, Mismatches: 12, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
131 92 0.48
132 79 0.41
133 20 0.10
ACGTcount: A:0.36, C:0.09, G:0.19, T:0.35
Consensus pattern (131 bp):
ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAAG
TATACTTTATGTATACAATATGAAAAGGTTAGGATACTTTGTGTATACCATTTGAAAAAAAAAGG
T
Found at i:27152333 original size:197 final size:197
Alignment explanation
Indices: 27151946--27152337 Score: 556
Period size: 197 Copynumber: 2.0 Consensus size: 197
27151936 AAGGTTAGGC
* *
27151946 ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTTTATACCATTTGAAAAGGAAATG
1 ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGG
27152011 TATACTTTATGTATACAATATGAAAAGGTTAGGTACTTTGTGTATACCATTTGAAAAAAAAAAGG
66 TATACTTTATGTATACAATATGAAAAGGTTAGGTACTTTGTGTATACCATTTGAAAAAAAAAAGG
** * * * * * * *
27152076 TATACTTAGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTGTACCATTTGAAAAGGAAAG
131 TATACTTAGTGTATACCATATGAAAAGGAAAGGTACACCTCGAGTGTACAACTAGAAAAGGAAAG
27152141 GT
196 GT
27152143 ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGG
1 ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGG
* * * **
27152208 TATACTTTGTGTCTACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAA
66 TATACTTTATGTATACAATATGAAAAGGTTAGG--TACTTTGTGTATACCATTTGAAAAAAAAAA
* * * *
27152273 -GTATACTTTGTGTGTACCAT-TCGGAAA-GAAATGTACACCTCGAGTGTACAACTAGAAAAGGA
129 GGTATACTTAGTGTATACCATAT-GAAAAGGAAAGGTACACCTCGAGTGTACAACTAGAAAAGGA
27152335 AAG
193 AAG
27152338 TTCCATCGGA
Statistics
Matches: 172, Mismatches: 20, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
197 122 0.71
198 22 0.13
199 28 0.16
ACGTcount: A:0.36, C:0.10, G:0.20, T:0.33
Consensus pattern (197 bp):
ATACTTTGTGTATACCATATGAAAAGGTTAGGTATACTTTGTGTATACCATTTGAAAAGGAAAGG
TATACTTTATGTATACAATATGAAAAGGTTAGGTACTTTGTGTATACCATTTGAAAAAAAAAAGG
TATACTTAGTGTATACCATATGAAAAGGAAAGGTACACCTCGAGTGTACAACTAGAAAAGGAAAG
GT
Found at i:27160580 original size:25 final size:25
Alignment explanation
Indices: 27160526--27160582 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
27160516 AACTTAAGTG
**
27160526 TTTTCAGTACAGTCTATATATAGTA
1 TTTTCAGTACAGTCTATATATAACA
* *
27160551 GTTTCAGTACA-TACTATCTATAACA
1 TTTTCAGTACAGT-CTATATATAACA
27160576 TTTTCAG
1 TTTTCAG
27160583 CTTATATACA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.42
Consensus pattern (25 bp):
TTTTCAGTACAGTCTATATATAACA
Found at i:27164501 original size:47 final size:47
Alignment explanation
Indices: 27164447--27164802 Score: 640
Period size: 47 Copynumber: 7.6 Consensus size: 47
27164437 TATTTGAATA
27164447 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27164494 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27164541 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27164588 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
27164635 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27164682 AATGTGAAAGTGTATATATGAGATAAGACCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
27164729 GATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
27164776 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
27164803 TCCCGAAGGG
Statistics
Matches: 299, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 299 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:27178200 original size:42 final size:43
Alignment explanation
Indices: 27178106--27178215 Score: 127
Period size: 42 Copynumber: 2.6 Consensus size: 43
27178096 CAATGCCGAC
* * *
27178106 GTCCTAGACATGGTCTTACATGTAATTCAGTATCGATGCCTCT
1 GTCCTAGACAAGGTCTTACACGTAATTCAGTATCGATGCCTAT
*
27178149 ATCCTAGACAAGGTCTTACACG-AATTCAG-ATACGATG-CTGAT
1 GTCCTAGACAAGGTCTTACACGTAATTCAGTAT-CGATGCCT-AT
* *
27178191 GTCCCAGACAGGGTCTTACACGTAA
1 GTCCTAGACAAGGTCTTACACGTAA
27178216 ATTTCGAATT
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
41 4 0.07
42 32 0.56
43 21 0.37
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (43 bp):
GTCCTAGACAAGGTCTTACACGTAATTCAGTATCGATGCCTAT
Found at i:27179984 original size:49 final size:49
Alignment explanation
Indices: 27179876--27180003 Score: 154
Period size: 49 Copynumber: 2.6 Consensus size: 49
27179866 AAGTTGCCGC
* *
27179876 TGCCATGTCCCAAACATGGTCTTACGCTGGCTATCTCCATCGAGGCTGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTATCTCCATCGAGGCTGA
* * **
27179925 TGCCACGTCCCAAACATGGTCTTACACTAGCTCTCATGTATACG-GGCTGA
1 TGCCATGTCCCAAACATGGTCTTACACTAGCTATC-TCCAT-CGAGGCTGA
*
27179975 TG-CATGTCCCAGACAT-GTCTTACACTAGC
1 TGCCATGTCCCAAACATGGTCTTACACTAGC
27180004 ACGAAACTTA
Statistics
Matches: 69, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 13 0.19
49 43 0.62
50 11 0.16
51 2 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (49 bp):
TGCCATGTCCCAAACATGGTCTTACACTAGCTATCTCCATCGAGGCTGA
Found at i:27180569 original size:30 final size:30
Alignment explanation
Indices: 27180529--27180585 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
27180519 AATTTACATA
* *
27180529 TTTGATAAAATGACCATTTTGCCCCTAGAC
1 TTTGACAAAATGACCATTTTACCCCTAGAC
27180559 TTTGACAAAATGACCATTTTACCCCTA
1 TTTGACAAAATGACCATTTTACCCCTA
27180586 TGCTCGAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.11, T:0.33
Consensus pattern (30 bp):
TTTGACAAAATGACCATTTTACCCCTAGAC
Found at i:27189976 original size:19 final size:19
Alignment explanation
Indices: 27189952--27190029 Score: 62
Period size: 19 Copynumber: 4.4 Consensus size: 19
27189942 AATCATATCT
27189952 TCTAAGATTACATATCTTA
1 TCTAAGATTACATATCTTA
**
27189971 TCTAAGA-TATGTAATCTTA
1 TCTAAGATTACAT-ATCTTA
*
27189990 --TAA-AATA-ATATCTTA
1 TCTAAGATTACATATCTTA
*
27190005 --TAAGATTACATATCATA
1 TCTAAGATTACATATCTTA
27190022 TCTAAGAT
1 TCTAAGAT
27190030 CTCTAAGATT
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
15 9 0.19
16 5 0.10
17 12 0.25
18 3 0.06
19 19 0.40
ACGTcount: A:0.42, C:0.12, G:0.06, T:0.40
Consensus pattern (19 bp):
TCTAAGATTACATATCTTA
Done.