Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 106989029
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 3754247 characters in sequence are not A, C, G, or T
File 93 of 322
Found at i:30184942 original size:6 final size:6
Alignment explanation
Indices: 30184931--30184996 Score: 73
Period size: 6 Copynumber: 10.8 Consensus size: 6
30184921 AACCAAAATG
* *
30184931 AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC AGAATT ACGTGA-C
1 AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC
30184980 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
30184997 GTGAATGCAA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
5 3 0.06
6 43 0.84
7 4 0.08
8 1 0.02
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:30184985 original size:31 final size:30
Alignment explanation
Indices: 30184931--30184996 Score: 105
Period size: 31 Copynumber: 2.2 Consensus size: 30
30184921 AACCAAAATG
30184931 AGAATCAGAATCAGTAACAGAATCAGAATC
1 AGAATCAGAATCAGTAACAGAATCAGAATC
* *
30184961 AGAATCAGAATTACGTGACAGAATCAGAATC
1 AGAATCAGAATCA-GTAACAGAATCAGAATC
30184992 AGAAT
1 AGAAT
30184997 GTGAATGCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
30 12 0.36
31 21 0.64
ACGTcount: A:0.48, C:0.15, G:0.18, T:0.18
Consensus pattern (30 bp):
AGAATCAGAATCAGTAACAGAATCAGAATC
Found at i:30185400 original size:22 final size:22
Alignment explanation
Indices: 30185352--30185410 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
30185342 GTAAATACGT
*
30185352 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
30185374 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
30185396 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
30185411 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:30185579 original size:27 final size:26
Alignment explanation
Indices: 30185501--30185580 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 26
30185491 ATCGGTCAAT
* * *
30185501 AGATATTGTGACAGAGTCACCAAATAC
1 AGATATTGTGGCAGAGCCACCAGA-AC
30185528 AGATATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
* *
30185554 AGATATTTGTGGCATAGCCACTAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
30185581 GCTTCCTCCG
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 7 0.15
27 40 0.85
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:30185669 original size:31 final size:31
Alignment explanation
Indices: 30185631--30185697 Score: 116
Period size: 31 Copynumber: 2.2 Consensus size: 31
30185621 GTATGCAGAA
30185631 TGTCATGCCCATATTTGAATCAAAAAATCAC
1 TGTCATGCCCATATTTGAATCAAAAAATCAC
*
30185662 TGTCATGCCCATATTTGAATCAAACAATCAC
1 TGTCATGCCCATATTTGAATCAAAAAATCAC
*
30185693 AGTCA
1 TGTCA
30185698 AGTCATTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.37, C:0.24, G:0.10, T:0.28
Consensus pattern (31 bp):
TGTCATGCCCATATTTGAATCAAAAAATCAC
Found at i:30185840 original size:27 final size:27
Alignment explanation
Indices: 30185810--30186005 Score: 212
Period size: 27 Copynumber: 7.3 Consensus size: 27
30185800 GGGGCAAAAT
* * *
30185810 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
30185837 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
30185864 GGTATTTCTATCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
30185891 GATAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
30185918 GGTAATTCTATCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
30185945 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
** * *
30185972 GAAAATTCTACCCTACAGGGGCATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
30185999 AGTAATT
1 GGTAATT
30186006 TCACAATCAA
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 143 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:30185857 original size:54 final size:54
Alignment explanation
Indices: 30185799--30185905 Score: 119
Period size: 54 Copynumber: 2.0 Consensus size: 54
30185789 TTAACACCCT
*
30185799 AGGGGCAAAAT-GGTAATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCCTAC
1 AGGGG-AAAATCGGT-ATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
* ** * * *
30185853 AGGGGTATTTCGGTATTTCTATCCTACAAGGGTATTTCGATAATTCTACCCTA
1 AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTA
30185906 TAAGGGTATT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
53 6 0.14
54 38 0.86
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (54 bp):
AGGGGAAAATCGGTATTTCTACCCCACAAGGGTATCTCGATAATTCTACCCTAC
Found at i:30186040 original size:27 final size:27
Alignment explanation
Indices: 30186010--30186662 Score: 710
Period size: 27 Copynumber: 24.2 Consensus size: 27
30186000 GTAATTTCAC
* *
30186010 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
30186037 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
30186064 AA-CTGAGGGT-AAACTAGTAATTCTGTA
1 AATC-GAGGGTAAAAC-GGTAATTCTGTA
* * **
30186091 AATCAAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
30186118 AATCGAGGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
30186145 AATCGAGGGTAAAACAGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
30186172 AA-CTGAGGGTAAAATGGTAATTCTCTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* ** *
30186199 AATCGAGGGTGAAATAGTAATTTTGT-
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * *
30186225 AACCTAATGGTAAAACGGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
30186253 AATCGAGGGTAAAATGGTAATTTTAAA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
30186280 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
30186307 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
30186334 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* *
30186361 AATCGAGGGTAAAACTGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
30186388 AACCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
30186415 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
30186442 AA-CTGAGGGTAAAATGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * **
30186469 AATCGAGGGTAAAACAGTAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* * * *
30186496 AATCAAGGGTAAAATGATAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
** *
30186523 AATCGAGGGTAAAATAGTAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
30186550 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
30186577 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
30186604 AA-CTGAAGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
30186631 AATCGAGGGTAAAACGAAAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
30186658 AATCG
1 AATCG
30186663 GGAGTACTTT
Statistics
Matches: 529, Mismatches: 81, Indels: 32
0.82 0.13 0.05
Matches are distributed among these distances:
26 13 0.02
27 503 0.95
28 13 0.02
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:30186693 original size:108 final size:108
Alignment explanation
Indices: 30186015--30186644 Score: 872
Period size: 108 Copynumber: 5.8 Consensus size: 108
30186005 TTCACAATCA
* * * * *
30186015 AGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAACGATAATTTTGTAAACTGAGGGTAAACTA
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAACTGAGGGTAAAATG
* **
30186080 GTAATTCTGTAAATCAAGGGTAAAACG-GTAATTTTACAAA-TCG
66 GTAATTCTGTAAATCGAGGGTAAAA-GAGTAATTTTGTAAACT-G
* *
30186123 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTATAAACTGAGGGTAAAATG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAACTGAGGGTAAAATG
* * * * *
30186188 GTAATTCTCTAAATCGAGGGTGAAATAGTAATTTTGTAACCTA
66 GTAATTCTGTAAATCGAGGGTAAAAGAGTAATTTTGTAAACTG
* * * *
30186231 ATGGTAAAACGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTA-AAAATCGAGGGTAAAAT
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAACT-GAGGGTAAAAT
* *
30186295 GGTAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAACTG
65 GGTAATTCTGTAAATCGAGGGTAAAAGAGTAATTTTGTAAACTG
* * *
30186339 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACTGTAATTTTGTAAACCGAGGGTAAAATG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAACTGAGGGTAAAATG
* *
30186404 GTAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGTAAACTG
66 GTAATTCTGTAAATCGAGGGTAAAAGAGTAATTTTGTAAACTG
* * * *
30186447 AGGGTAAAATGGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTACAAA-TCAAGGGTAAAAT
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAACT-GAGGGTAAAAT
* * *
30186511 GATAATTCTATAAATCGAGGGTAAAATAGTAATTTTGTAAACTG
65 GGTAATTCTGTAAATCGAGGGTAAAAGAGTAATTTTGTAAACTG
* * *
30186555 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAACTGAAGGTAAAACG
1 AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAACTGAGGGTAAAATG
30186620 GTAATTCTGTAAATCGAGGGTAAAA
66 GTAATTCTGTAAATCGAGGGTAAAA
30186645 CGAAAATTCT
Statistics
Matches: 464, Mismatches: 52, Indels: 12
0.88 0.10 0.02
Matches are distributed among these distances:
107 4 0.01
108 455 0.98
109 5 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (108 bp):
AGGGTAAAACGGTAATTCTGTAAATCGAGGGTAAAACGGTAATTTTATAAACTGAGGGTAAAATG
GTAATTCTGTAAATCGAGGGTAAAAGAGTAATTTTGTAAACTG
Found at i:30195975 original size:17 final size:17
Alignment explanation
Indices: 30195953--30195990 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
30195943 GGGACAGGGT
30195953 TTAAGGAATTACCAGAC
1 TTAAGGAATTACCAGAC
30195970 TTAAGGAATTACCAGAC
1 TTAAGGAATTACCAGAC
30195987 TTAA
1 TTAA
30195991 ACATAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.26
Consensus pattern (17 bp):
TTAAGGAATTACCAGAC
Found at i:30200312 original size:49 final size:50
Alignment explanation
Indices: 30200074--30200317 Score: 242
Period size: 49 Copynumber: 4.9 Consensus size: 50
30200064 CTATTGTGAT
* * *
30200074 GTCACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTACCGGATAATT-G
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAG
* * * ** *
30200123 GTCGCATGTGTATTACTAAGTGCAGGCTACTATGCATACCCA-ATAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-TTAG
* * * * **
30200174 ATCACGTGTGTAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAG
** * *
30200224 GTCATGTGTGTAGTACTACGTGCAGGCTACTACGTGTACCAGGTAATT-G
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAG
* * * *
30200273 GTCGCATGTGTAGTACTAAGTACAGGCTACTATGCGTACCAGATA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
30200318 GCTTTGGCTA
Statistics
Matches: 155, Mismatches: 36, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
49 73 0.47
50 49 0.32
51 33 0.21
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTAG
Found at i:30204486 original size:79 final size:79
Alignment explanation
Indices: 30204340--30204559 Score: 234
Period size: 79 Copynumber: 2.8 Consensus size: 79
30204330 CCAAATCACG
* * ** * *
30204340 TACCTTCGGAATTTAACCGGATATAGCTACTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTAT
1 TACCTTCGGGACTTAACCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATAT
30204404 AGTAACTCGCACAAA
65 AGTAACTCGCACAAA
*
30204419 TACCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGAAT-
1 TACCTTCGGGACTTAA-CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATA
*
30204482 TAGTATCTCGCACAAA
64 TAGTAACTCGCACAAA
* * * *
30204498 TGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 TACCTTCGGGA-CTTA-ACCGGATATAGT-AC-TCGCACAAATGCCTTCGGGACTTAGCCCGGA
30204560 CATCATTCAA
Statistics
Matches: 120, Mismatches: 14, Indels: 13
0.82 0.10 0.09
Matches are distributed among these distances:
78 3 0.03
79 69 0.57
80 48 0.40
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (79 bp):
TACCTTCGGGACTTAACCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATATA
GTAACTCGCACAAA
Found at i:30204559 original size:40 final size:40
Alignment explanation
Indices: 30204356--30204559 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
30204346 CGGAATTTAA
** *
30204356 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
30204396 CCGGTTATAGTAACTCGCACAAATACCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
30204436 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
30204475 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
30204515 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
30204555 CCGGA
1 CCGGA
30204560 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:30206064 original size:159 final size:158
Alignment explanation
Indices: 30205776--30206091 Score: 589
Period size: 159 Copynumber: 2.0 Consensus size: 158
30205766 CCTTAGAATC
30205776 TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTTTCTTTTCTTTTCTTTAACTCACGG
1 TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTTTCTTTTCTTTTCTTTAACTCACGG
*
30205841 CAAAAGGGGGGGGCTTGGATGAGACCATTCTTTTTTTTTCATCACTCCTCCCTTTCATTATTTAA
66 CAAAAGGGGGGGGCATGGATGAGACCATTCTTTTTTTTTCATCACTCCTCCCTTTCATTATTTAA
30205906 TTACCATGCTCATTATTTTATTGTTTCT
131 TTACCATGCTCATTATTTTATTGTTTCT
30205934 TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTTTTCTTTTCTTTTCTTTAACTCACG
1 TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAA-TTTTTTTCTTTTCTTTTCTTTAACTCACG
*
30205999 TCAAAA-GGGGGGGCATGGATGAGACCATTCTTTTTTTTTTCATCACTCCTCCCTTTCATTATTT
65 GCAAAAGGGGGGGGCATGGATGAGACCATTC-TTTTTTTTTCATCACTCCTCCCTTTCATTATTT
30206063 AATTACCATGCTCATTATTTTATTGTTTC
129 AATTACCATGCTCATTATTTTATTGTTTC
30206092 CACCCATGAT
Statistics
Matches: 154, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
158 58 0.38
159 96 0.62
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (158 bp):
TTCGGCCAAAAGAAGATGAAAAAGGATGAACAAAATTTTTTTCTTTTCTTTTCTTTAACTCACGG
CAAAAGGGGGGGGCATGGATGAGACCATTCTTTTTTTTTCATCACTCCTCCCTTTCATTATTTAA
TTACCATGCTCATTATTTTATTGTTTCT
Found at i:30206637 original size:64 final size:64
Alignment explanation
Indices: 30206556--30206739 Score: 178
Period size: 67 Copynumber: 2.8 Consensus size: 64
30206546 AGACATTATG
* * *
30206556 ATGTAGCTAGGTCGCATGGGTGATACTATGTTTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTTTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * ***
30206620 ATGTAGGTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TTTACACCATGTAGACAAGAGAGCTACGAGAT
30206685 AA
63 AA
* *
30206687 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTT-CACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGGTACTATGT-TTACACCATGTAG-ACAAGAGAGC
30206740 CAAAATTATG
Statistics
Matches: 95, Mismatches: 19, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
62 1 0.01
63 18 0.19
64 24 0.25
66 20 0.21
67 30 0.32
68 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTTTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:30211999 original size:40 final size:40
Alignment explanation
Indices: 30211895--30212086 Score: 192
Period size: 40 Copynumber: 4.8 Consensus size: 40
30211885 GCTCCTCGTT
* * * *
30211895 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
30211935 C-AATGCCTTCGGGACATAATCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
30211974 CGAATGCCTTCGGAACTTAACCCGGATTTAGTATCTCGAA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * *
30212014 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTTGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
**
30212054 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTA
30212087 TCTAACAATA
Statistics
Matches: 127, Mismatches: 21, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
39 40 0.31
40 83 0.65
41 4 0.03
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:30212064 original size:80 final size:79
Alignment explanation
Indices: 30211895--30212089 Score: 214
Period size: 80 Copynumber: 2.5 Consensus size: 79
30211885 GCTCCTCGTT
* * * * * *
30211895 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAATCCGGA
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTATCTCACACAAGGCCTTCGGGACATAACCCGGA
30211960 TTTAATAACTCGCA
66 TTTAATAACTCGCA
* * * *
30211974 CGAATGCCTTCGGAACTTAACCCGGATTTAGTATCTCGA-ACAAAGGCCTTCGGGGCTTAACCCG
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTATCTC-ACAC-AAGGCCTTCGGGACATAACCCG
* * *
30212038 GAATTT-GTATCTTGCA
64 G-ATTTAATAACTCGCA
* *
30212054 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCT
1 CAAATGCCTTCGGAACTTAGCCCGGATTTAGTATCT
30212090 AACAATAATT
Statistics
Matches: 96, Mismatches: 17, Indels: 5
0.81 0.14 0.04
Matches are distributed among these distances:
79 33 0.34
80 59 0.61
81 4 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (79 bp):
CAAATGCCTTCGGAACTTAGCCCGGATTTAGTATCTCACACAAGGCCTTCGGGACATAACCCGGA
TTTAATAACTCGCA
Found at i:30215185 original size:49 final size:49
Alignment explanation
Indices: 30215128--30215301 Score: 249
Period size: 49 Copynumber: 3.5 Consensus size: 49
30215118 TGAGGTCACG
* *
30215128 TGTGTAGTACTAAATGCAGGATACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
* * ** * *
30215177 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT-GGTCGCA
* *
30215227 TGTATAGCACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
30215276 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
30215302 TGCATACCAG
Statistics
Matches: 106, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 65 0.61
50 41 0.39
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
Found at i:30215291 original size:99 final size:99
Alignment explanation
Indices: 30215120--30215301 Score: 328
Period size: 99 Copynumber: 1.8 Consensus size: 99
30215110 ATCTATTGTG
* *
30215120 AGGTCACGTGTGTAGTACTAAATGCAGGATACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTATAGCACTAAATGCAGGATACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
30215185 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
66 ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
* *
30215219 AGGTCACGTGTATAGCACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
1 AGGTCACGTGTATAGCACTAAATGCAGGATACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
30215284 ACTAAGTGCAGGCTACTA
66 ACTAAGTGCAGGCTACTA
30215302 TGCATACCAG
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 79 1.00
ACGTcount: A:0.26, C:0.18, G:0.28, T:0.28
Consensus pattern (99 bp):
AGGTCACGTGTATAGCACTAAATGCAGGATACTACGTGTACCGGATAATTGGTCGCATGTGTAGT
ACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
Found at i:30234509 original size:29 final size:29
Alignment explanation
Indices: 30234467--30234539 Score: 92
Period size: 29 Copynumber: 2.5 Consensus size: 29
30234457 ATATTCCTAT
*
30234467 GGCCCATTAGGCCCAAACCACCTGTATAC
1 GGCCCATTAGGCCCAAACCACATGTATAC
* * *
30234496 GGCCCATTAGGCCCAAATCACATTTATAT
1 GGCCCATTAGGCCCAAACCACATGTATAC
* *
30234525 GGCCCGTTAAGCCCA
1 GGCCCATTAGGCCCA
30234540 GTCACATTCA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.27, C:0.34, G:0.18, T:0.21
Consensus pattern (29 bp):
GGCCCATTAGGCCCAAACCACATGTATAC
Found at i:30234539 original size:58 final size:57
Alignment explanation
Indices: 30234429--30234539 Score: 132
Period size: 58 Copynumber: 1.9 Consensus size: 57
30234419 AAGTTCACAT
* * * *
30234429 ACCTGTATCCGGCCCATTAAACACAATCATATTCCTATGGCCCATTAGGCCCAAACC
1 ACCTGTATACGGCCCATTAAACACAATCACATTCATATGGCCCATTAAGCCCAAACC
** * * *
30234486 ACCTGTATACGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAAGCCCA
1 ACCTGTATACGGCCCATTAAACAC-AATCACATTCATATGGCCCATTAAGCCCA
30234540 GTCACATTCA
Statistics
Matches: 44, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
57 20 0.45
58 24 0.55
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.23
Consensus pattern (57 bp):
ACCTGTATACGGCCCATTAAACACAATCACATTCATATGGCCCATTAAGCCCAAACC
Found at i:30236035 original size:17 final size:16
Alignment explanation
Indices: 30236002--30236033 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
30235992 AAGTTCAGGA
30236002 TTTCGGGATTTTTGGG
1 TTTCGGGATTTTTGGG
30236018 TTTCGGGATTTTTGGG
1 TTTCGGGATTTTTGGG
30236034 GTGTTACACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.06, G:0.38, T:0.50
Consensus pattern (16 bp):
TTTCGGGATTTTTGGG
Found at i:30243917 original size:18 final size:20
Alignment explanation
Indices: 30243877--30243922 Score: 78
Period size: 18 Copynumber: 2.4 Consensus size: 20
30243867 GTTCCCAACT
30243877 CATTTCACAATTTCACATTC
1 CATTTCACAATTTCACATTC
30243897 CATTTCAC-ATTTCAC-TTC
1 CATTTCACAATTTCACATTC
30243915 CATTTCAC
1 CATTTCAC
30243923 GTCATTTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
18 11 0.42
19 7 0.27
20 8 0.31
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (20 bp):
CATTTCACAATTTCACATTC
Found at i:30244351 original size:2 final size:2
Alignment explanation
Indices: 30244344--30244370 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
30244334 GCATTCAATT
30244344 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
30244371 TATATATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:30250290 original size:16 final size:17
Alignment explanation
Indices: 30250269--30250302 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
30250259 ATAAGCTTAC
*
30250269 TTCTGTGT-GTTTGATG
1 TTCTGTGTAGATTGATG
30250285 TTCTGTGTAGATTGATG
1 TTCTGTGTAGATTGATG
30250302 T
1 T
30250303 GAATTTGGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.12, C:0.06, G:0.29, T:0.53
Consensus pattern (17 bp):
TTCTGTGTAGATTGATG
Found at i:30251764 original size:43 final size:43
Alignment explanation
Indices: 30251716--30251939 Score: 173
Period size: 43 Copynumber: 5.2 Consensus size: 43
30251706 TAAAAAAACA
* * * ** *
30251716 CCGCTAAAGGCCATGATCTTTAACCGCGCTTTTCCCGCAAATG
1 CCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTCACAAATG
* * ** *
30251759 CCGCTAATGACCATGACCATTAACGGCATTTTTTTCACAAACG
1 CCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTCACAAATG
** *
30251802 CTACTAAAGACCATGACCTTTAGCGGCGCTTTTTTCACAAATG
1 CCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTCACAAATG
* * ** * * * *
30251845 CTGCTAAAGACCATGATCTTTAGTGCCGCTTTTTCCAAAAACG
1 CCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTCACAAATG
* * * * * *
30251888 CCGCTATATA--ATAGACCTTTAGCAGCGCTTTTCTCACAAACG
1 CCGCTAAAGACCAT-GACCTTTAACGGCGCTTTTTTCACAAATG
30251930 CCGCTAAAGA
1 CCGCTAAAGA
30251940 ATATAACCTT
Statistics
Matches: 142, Mismatches: 38, Indels: 3
0.78 0.21 0.02
Matches are distributed among these distances:
41 2 0.01
42 30 0.21
43 110 0.77
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (43 bp):
CCGCTAAAGACCATGACCTTTAACGGCGCTTTTTTCACAAATG
Found at i:30256954 original size:22 final size:20
Alignment explanation
Indices: 30256897--30256958 Score: 54
Period size: 22 Copynumber: 2.9 Consensus size: 20
30256887 AAATCCCAAC
30256897 CCTTAAAC-CATAATCCATAAA
1 CCTTAAACAC-TAA-CCATAAA
*
30256918 CCTTAAAATACTAACTCATAAA
1 CCTT-AAACACTAAC-CATAAA
*
30256940 CCTTAAACCCTTAACCATA
1 CCTTAAACAC-TAACCATA
30256959 TACCCTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
21 13 0.38
22 20 0.59
23 1 0.03
ACGTcount: A:0.45, C:0.29, G:0.00, T:0.26
Consensus pattern (20 bp):
CCTTAAACACTAACCATAAA
Found at i:30257161 original size:21 final size:21
Alignment explanation
Indices: 30257108--30257161 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
30257098 AATCCTTATT
*
30257108 CCTTAATCCCTAAATCATAAAC
1 CCTTAA-CCCTAAAACATAAAC
* * *
30257130 CATAAATCCTAAAACATAAAC
1 CCTTAACCCTAAAACATAAAC
30257151 CCTTAACCCTA
1 CCTTAACCCTA
30257162 GACCCCTAAC
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.24
Consensus pattern (21 bp):
CCTTAACCCTAAAACATAAAC
Found at i:30257172 original size:21 final size:20
Alignment explanation
Indices: 30257148--30257218 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 20
30257138 CTAAAACATA
30257148 AACCCTTAACCCTAGACCCCT
1 AACCCTTAACCCTA-ACCCCT
*
30257169 AACCCTTAACCCCTAA-CCAT
1 AACCCTTAA-CCCTAACCCCT
* *
30257189 AACTCCTAAACCTTAAACCCC-
1 AAC-CCTTAACCCT-AACCCCT
30257210 AACCCTTAA
1 AACCCTTAA
30257219 ACCATAATCC
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 14 0.34
21 20 0.49
22 7 0.17
ACGTcount: A:0.35, C:0.44, G:0.01, T:0.20
Consensus pattern (20 bp):
AACCCTTAACCCTAACCCCT
Found at i:30257180 original size:14 final size:14
Alignment explanation
Indices: 30257148--30257218 Score: 67
Period size: 14 Copynumber: 5.1 Consensus size: 14
30257138 CTAAAACATA
*
30257148 AACCCTTAACCC-T
1 AACCCCTAACCCTT
30257161 AGACCCCTAACCCTT
1 A-ACCCCTAACCCTT
*
30257176 AACCCCTAA-CCAT
1 AACCCCTAACCCTT
* *
30257189 AACTCCTAAACCTT
1 AACCCCTAACCCTT
30257203 AAACCCC-AACCCTT
1 -AACCCCTAACCCTT
30257217 AA
1 AA
30257219 ACCATAATCC
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
13 14 0.29
14 27 0.56
15 7 0.15
ACGTcount: A:0.35, C:0.44, G:0.01, T:0.20
Consensus pattern (14 bp):
AACCCCTAACCCTT
Found at i:30257219 original size:21 final size:22
Alignment explanation
Indices: 30257195--30257250 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
30257185 CCATAACTCC
* *
30257195 TAAACCTTAAACCCCAAC-CCT
1 TAAACCATAAACCCCAAACCCT
* *
30257216 TAAACCATAATCCCCAAACCCA
1 TAAACCATAAACCCCAAACCCT
*
30257238 TAATCCATAAACC
1 TAAACCATAAACC
30257251 TTAAAATAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 15 0.54
22 13 0.46
ACGTcount: A:0.43, C:0.39, G:0.00, T:0.18
Consensus pattern (22 bp):
TAAACCATAAACCCCAAACCCT
Found at i:30257245 original size:22 final size:21
Alignment explanation
Indices: 30257195--30257247 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
30257185 CCATAACTCC
* * *
30257195 TAAACCTTAAACCCCAACCCT
1 TAAACCATAATCCCCAACCCA
30257216 TAAACCATAATCCCCAAACCCA
1 TAAACCATAATCCCC-AACCCA
*
30257238 TAATCCATAA
1 TAAACCATAA
30257248 ACCTTAAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
21 13 0.48
22 14 0.52
ACGTcount: A:0.43, C:0.38, G:0.00, T:0.19
Consensus pattern (21 bp):
TAAACCATAATCCCCAACCCA
Found at i:30260428 original size:154 final size:155
Alignment explanation
Indices: 30260147--30260466 Score: 527
Period size: 154 Copynumber: 2.1 Consensus size: 155
30260137 GTTTAAATAA
* *
30260147 TTAATTTCAAATCATGCAATTAAGATAATTCATTTTGCTAATATTGATGAGTTTATATCTCAGTA
1 TTAATTTCAAATCATGCAATTAAGATAATTCATTTTGATAATATTGATGAGTTTATATATCAGTA
* ** *
30260212 TTTTTATTGATTGAGTTTGAAAAACTTTTGTAAAAGTTTGTTATTTATGTGCATAATAGTTTAGA
66 CTTTTATTGATTGAGTTTGAAAAACTTTTGTAAAAGTTTGTTATTTATGCACATAACAGTTTAGA
*
30260277 GAAATTATTGATTGAATGCCTCTAG
131 GAAATTATTGATTGAACGCCTCTAG
*
30260302 TTAATTTCAGATCATGCAATTAAGATAATT-AGTTTTGATAATATTGATGAGTTTATATATCAGT
1 TTAATTTCAAATCATGCAATTAAGATAATTCA-TTTTGATAATATTGATGAGTTTATATATCAGT
30260366 -CTTTTATTGATTGAGTTTGAAAAACTTTTGTAAAAGTTTGTTATTTATGCACATAACAGTTTAG
65 ACTTTTATTGATTGAGTTTGAAAAACTTTTGTAAAAGTTTGTTATTTATGCACATAACAGTTTAG
*
30260430 AGAAATTATTGATTGAACGCCTCTGG
130 AGAAATTATTGATTGAACGCCTCTAG
*
30260456 TTAATGTCAAA
1 TTAATTTCAAA
30260467 ACTATTACTT
Statistics
Matches: 153, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
154 94 0.61
155 59 0.39
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.43
Consensus pattern (155 bp):
TTAATTTCAAATCATGCAATTAAGATAATTCATTTTGATAATATTGATGAGTTTATATATCAGTA
CTTTTATTGATTGAGTTTGAAAAACTTTTGTAAAAGTTTGTTATTTATGCACATAACAGTTTAGA
GAAATTATTGATTGAACGCCTCTAG
Found at i:30262779 original size:14 final size:14
Alignment explanation
Indices: 30262760--30262790 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
30262750 ATTTTGAATT
30262760 TTTAGAATTATTTA
1 TTTAGAATTATTTA
30262774 TTTAGAATTATTTA
1 TTTAGAATTATTTA
30262788 TTT
1 TTT
30262791 TTAAAAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.61
Consensus pattern (14 bp):
TTTAGAATTATTTA
Found at i:30262975 original size:18 final size:18
Alignment explanation
Indices: 30262952--30262987 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
30262942 GTCATCATTT
30262952 AACAAATAAAATTTAACG
1 AACAAATAAAATTTAACG
30262970 AACAAATAAAATTTAACG
1 AACAAATAAAATTTAACG
30262988 GAGGGGCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22
Consensus pattern (18 bp):
AACAAATAAAATTTAACG
Found at i:30264618 original size:32 final size:32
Alignment explanation
Indices: 30264577--30264658 Score: 128
Period size: 32 Copynumber: 2.6 Consensus size: 32
30264567 TGGGCTCACA
*
30264577 TGCCCGTGTGGTCCACACGCCCAGTTTGGCCT
1 TGCCCGTGTGGTCCACACGCCCAGATTGGCCT
*
30264609 TGCCCGTGTGGTCCACACGCCTAGATTGGCCT
1 TGCCCGTGTGGTCCACACGCCCAGATTGGCCT
* *
30264641 TGCCTGTGTAGTCCACAC
1 TGCCCGTGTGGTCCACAC
30264659 CACATGCCCA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 46 1.00
ACGTcount: A:0.12, C:0.35, G:0.27, T:0.26
Consensus pattern (32 bp):
TGCCCGTGTGGTCCACACGCCCAGATTGGCCT
Found at i:30265340 original size:5 final size:5
Alignment explanation
Indices: 30265326--30265371 Score: 56
Period size: 5 Copynumber: 8.8 Consensus size: 5
30265316 TTTTTGGGAA
* *
30265326 AAAAT GAAAT AAAAT AAAAT AAAAT AATAAA AATAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AA-AAT AA-AAT AAAAT AAAA
30265372 GCAAATATGA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
5 27 0.75
6 9 0.25
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:30274367 original size:18 final size:18
Alignment explanation
Indices: 30274344--30274379 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
30274334 TAACATATAA
30274344 AAGTATATAATACATACC
1 AAGTATATAATACATACC
30274362 AAGTATATAATACATACC
1 AAGTATATAATACATACC
30274380 TGACCAACTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.06, T:0.28
Consensus pattern (18 bp):
AAGTATATAATACATACC
Found at i:30274767 original size:39 final size:39
Alignment explanation
Indices: 30274512--30274745 Score: 310
Period size: 39 Copynumber: 6.0 Consensus size: 39
30274502 AAAAAGCATG
* * *
30274512 CGGGACTTTAAGCCCGGATATAATACCATCATTAA-GCCTG
1 CGGGAC-TT-AGCCCGGATATAATACCAGCATAAATGCCTT
* *
30274552 CAGGACTTTAGCCCGGATATAATACCAACATAAATGCCTT
1 CGGGAC-TTAGCCCGGATATAATACCAGCATAAATGCCTT
* * ** *
30274592 CGAGATTTAGCCCGGATATAGCACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
30274631 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
* *
30274670 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
*
30274709 CGGGACTTAGCCCGAATATAATACCAGCATAAA-GCCT
1 CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCT
30274746 GCGGACCACA
Statistics
Matches: 172, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
38 4 0.02
39 153 0.89
40 15 0.09
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAATACCAGCATAAATGCCTT
Found at i:30276597 original size:3 final size:3
Alignment explanation
Indices: 30276589--30276613 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
30276579 CCCAAAGATT
30276589 TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC T
30276614 AGTTACGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:30280912 original size:39 final size:39
Alignment explanation
Indices: 30280657--30280890 Score: 337
Period size: 39 Copynumber: 6.0 Consensus size: 39
30280647 ACAAAGCATG
* *
30280657 CGGGACTTTAAGCCCGGATATAATACCAGCATAAA-GCCTG
1 CGGGAC-TT-AGCCCGGATATAACACCAGCATAAATGCCTT
* *
30280697 CGGGACTTTAGCCCGGATATAATACCAGCATAAATGCTTT
1 CGGGAC-TTAGCCCGGATATAACACCAGCATAAATGCCTT
* * *
30280737 CGGGACTTAGCCCAGATAAAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCATAAATGCCTT
*
30280776 CGGGACTTAGCCCGGATATAACACCAGCATAACTGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCATAAATGCCTT
*
30280815 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCATAAATGCCTT
*
30280854 CGGGACTTAGCCCGGATATAATACCAGCATAAA-GCCT
1 CGGGACTTAGCCCGGATATAACACCAGCATAAATGCCT
30280891 GCGGACCTCA
Statistics
Matches: 178, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
38 4 0.02
39 156 0.88
40 18 0.10
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCATAAATGCCTT
Found at i:30283272 original size:26 final size:26
Alignment explanation
Indices: 30283243--30283296 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
30283233 AGGGGAACAT
30283243 TATTATTATGTTTTG-TCTTTAGTTAG
1 TATTATTATGTTTTGTTC-TTAGTTAG
30283269 TATTATTATGTTTTGTTCTTAGTTAG
1 TATTATTATGTTTTGTTCTTAGTTAG
30283295 TA
1 TA
30283297 ATAATAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.20, C:0.04, G:0.15, T:0.61
Consensus pattern (26 bp):
TATTATTATGTTTTGTTCTTAGTTAG
Found at i:30283329 original size:10 final size:10
Alignment explanation
Indices: 30283311--30283340 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
30283301 TAATTAGTTA
30283311 TTATTTATTT
1 TTATTTATTT
*
30283321 TTTTTTATTT
1 TTATTTATTT
30283331 TTATTTATTT
1 TTATTTATTT
30283341 AACTACAACA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (10 bp):
TTATTTATTT
Found at i:30287993 original size:30 final size:30
Alignment explanation
Indices: 30287959--30288026 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
30287949 GGGAGGGAAT
30287959 CGTGTGTCACACACGGCCTAGACACACGCC
1 CGTGTGTCACACACGGCCTAGACACACGCC
30287989 CGTGTGTCACACACGGCCTAGACACACGCC
1 CGTGTGTCACACACGGCCTAGACACACGCC
30288019 CGTGTGTC
1 CGTGTGTC
30288027 TAACCATGTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.21, C:0.38, G:0.25, T:0.16
Consensus pattern (30 bp):
CGTGTGTCACACACGGCCTAGACACACGCC
Found at i:30292807 original size:20 final size:19
Alignment explanation
Indices: 30292759--30292811 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
30292749 AGCACATATA
30292759 TTCATAAAATTTTAGAATT
1 TTCATAAAATTTTAGAATT
* *
30292778 TTCCTAAAATTTTATAATTT
1 TTCATAAAATTTTAGAA-TT
*
30292798 TTCATCAAATTTTA
1 TTCATAAAATTTTA
30292812 CAACTATTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.38, C:0.09, G:0.02, T:0.51
Consensus pattern (19 bp):
TTCATAAAATTTTAGAATT
Found at i:30292821 original size:20 final size:19
Alignment explanation
Indices: 30292756--30292822 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 19
30292746 TACAGCACAT
*
30292756 ATATTCATAAAATTTTAGA
1 ATATTCATAAAATTTTACA
* * *
30292775 ATTTTCCTAAAATTTTATA
1 ATATTCATAAAATTTTACA
* *
30292794 ATTTTTCATCAAATTTTACA
1 A-TATTCATAAAATTTTACA
30292814 ACTATTCAT
1 A-TATTCAT
30292823 TTTAGTCCCT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
19 17 0.44
20 22 0.56
ACGTcount: A:0.39, C:0.12, G:0.01, T:0.48
Consensus pattern (19 bp):
ATATTCATAAAATTTTACA
Found at i:30295064 original size:80 final size:80
Alignment explanation
Indices: 30294951--30295173 Score: 304
Period size: 80 Copynumber: 2.8 Consensus size: 80
30294941 TACTTACTCG
* * *
30294951 AATGCCTTCGGGACATAGCCTGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
* *
30295016 ATAGTAGCTCGCACA
66 ATAATAACTCGCACA
* * * *
30295031 AATGCCTTCGGGACTTTGCCCGGATGTAATAACTCGCACAAATGCCTTTGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
* *
30295096 GTAATAACTCGGACA
66 ATAATAACTCGCACA
* * *
30295111 AATGCCTTCGGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
30295174 TTATCATCCG
Statistics
Matches: 124, Mismatches: 18, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
80 124 1.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAATAACTCGCACA
Found at i:30295164 original size:120 final size:120
Alignment explanation
Indices: 30294951--30295173 Score: 324
Period size: 120 Copynumber: 1.9 Consensus size: 120
30294941 TACTTACTCG
* * *
30294951 AATGCCTTCGGGACATAGCCTGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
* *
30295016 ATAGTAGCTCGCACAAATGCCTTCGGGACTTTGCCCGGATGTAATAACTCGCACA
66 ATAGTAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
* * * *
30295071 AATGCCTTTGGGACTTAGCCCGGATGTAATAACTCGGACAAATGCCTTCGGGACTTAGCCCGGA-
1 AATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
*
30295135 ACTAGTCA-CTAGCGCAAATGCCTTCGGGACTTAGCCCGG
66 A-TAGT-AGCTAGCACAAATGCCTTCGGGACTTAGCCCGG
30295174 TTATCATCCG
Statistics
Matches: 91, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
119 1 0.01
120 89 0.98
121 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
ATAGTAGCTAGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACA
Found at i:30295171 original size:40 final size:39
Alignment explanation
Indices: 30294951--30295173 Score: 275
Period size: 40 Copynumber: 5.6 Consensus size: 39
30294941 TACTTACTCG
* * *
30294951 AATGCCTTCGGGACATAGCCTGGATATAGTAACTCGCACC
1 AATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACA
*
30294991 AATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACA
* * *
30295031 AATGCCTTCGGGACTTTGCCCGGATGTAATAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACA
* * * *
30295071 AATGCCTTTGGGACTTAGCCCGGATGTAATAACTCGGACA
1 AATGCCTTCGGGACTTAGCCCGGA-ATAGTAACTCGCACA
* * *
30295111 AATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCA
1 AATGCCTTCGGGACTTAGCCCGGAA-TAGTAACTCGCACA
30295151 AATGCCTTCGGGACTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
30295174 TTATCATCCG
Statistics
Matches: 164, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 164 1.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGAATAGTAACTCGCACA
Found at i:30297583 original size:11 final size:11
Alignment explanation
Indices: 30297567--30297592 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
30297557 CAAAAAATAA
30297567 AAAATGAAAAG
1 AAAATGAAAAG
30297578 AAAATGAAAAG
1 AAAATGAAAAG
30297589 AAAA
1 AAAA
30297593 CCTAACCTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (11 bp):
AAAATGAAAAG
Found at i:30303475 original size:27 final size:27
Alignment explanation
Indices: 30303440--30303586 Score: 159
Period size: 27 Copynumber: 5.4 Consensus size: 27
30303430 GGGCATAATC
*
30303440 GTCATTTTACCATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
30303467 GACACTTTATCCTACAGCGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
30303494 GTCATTTTACCCTATAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
* *
30303521 GTCATTTTACCCTACAAGGGCATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * * *
30303548 ATCATTTTACCTTGCAGGGGCACTACG
1 GTCATTTTACCCTACAGGGGTATTACG
*
30303575 ATCATTTTACCC
1 GTCATTTTACCC
30303587 ATTTTGGGGT
Statistics
Matches: 99, Mismatches: 21, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:30303841 original size:18 final size:18
Alignment explanation
Indices: 30303815--30303855 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
30303805 AATCTGTTTG
30303815 GGGCC-TAAGAGCCCATT
1 GGGCCATAAGAGCCCATT
30303832 GGGCCATAAGAGCCCATT
1 GGGCCATAAGAGCCCATT
30303850 GGGCCA
1 GGGCCA
30303856 ACACAGCCCA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
17 5 0.22
18 18 0.78
ACGTcount: A:0.24, C:0.29, G:0.32, T:0.15
Consensus pattern (18 bp):
GGGCCATAAGAGCCCATT
Found at i:30303863 original size:18 final size:18
Alignment explanation
Indices: 30303815--30303866 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
30303805 AATCTGTTTG
*
30303815 GGGCC-TAAGAGCCCATT
1 GGGCCATAACAGCCCATT
*
30303832 GGGCCATAAGAGCCCATT
1 GGGCCATAACAGCCCATT
30303850 GGGCCA-ACACAGCCCAT
1 GGGCCATA-ACAGCCCAT
30303867 ATCGACCCAA
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
17 6 0.19
18 26 0.81
ACGTcount: A:0.27, C:0.33, G:0.27, T:0.13
Consensus pattern (18 bp):
GGGCCATAACAGCCCATT
Found at i:30305891 original size:24 final size:24
Alignment explanation
Indices: 30305859--30305907 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
30305849 ACAACACAAG
*
30305859 TAAGCTTAATGAAGCTTAATAGGT
1 TAAGCTTAATGAAGCCTAATAGGT
30305883 TAAGCTTAATGAAGCCTAATAGGT
1 TAAGCTTAATGAAGCCTAATAGGT
30305907 T
1 T
30305908 CATAGGCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (24 bp):
TAAGCTTAATGAAGCCTAATAGGT
Found at i:30306212 original size:33 final size:33
Alignment explanation
Indices: 30306175--30306251 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 33
30306165 TGGCCCTACC
*
30306175 ATGGTCTTACACTCGTAATGCCATAACCCAG-TT
1 ATGGTCTTACACTAG-AATGCCATAACCCAGCTT
* * *
30306208 ATGGTCTTATCATTAGGATGCCATAGCCCAGCTT
1 ATGGTCTTA-CACTAGAATGCCATAACCCAGCTT
30306242 -TGGTCTTACA
1 ATGGTCTTACA
30306252 TGTATACATA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
32 2 0.05
33 30 0.79
34 6 0.16
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (33 bp):
ATGGTCTTACACTAGAATGCCATAACCCAGCTT
Found at i:30311315 original size:54 final size:54
Alignment explanation
Indices: 30311225--30311333 Score: 141
Period size: 54 Copynumber: 2.0 Consensus size: 54
30311215 AGCATGACTG
* * * *
30311225 CCAGAATAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGAACAGATATTGTGACAGAGTCACCAAACACAGATATTTGTGGCAAAGCCA
*
30311278 CCAGAACAGATATTTGTGGCAGAG-CTACCAAACACAGATATTTGTGGCAAAGCCA
1 CCAGAACAGATA-TTGTGACAGAGTC-ACCAAACACAGATATTTGTGGCAAAGCCA
30311333 C
1 C
30311334 TGTAACGCCC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
53 12 0.25
54 22 0.46
55 14 0.29
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (54 bp):
CCAGAACAGATATTGTGACAGAGTCACCAAACACAGATATTTGTGGCAAAGCCA
Found at i:30311323 original size:28 final size:26
Alignment explanation
Indices: 30311225--30311326 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 26
30311215 AGCATGACTG
* *
30311225 CCAGAATAGATATTGTGACAGAG-TCA
1 CCAGAACAGATATTGTGGCAGAGCT-A
*
30311251 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCTA
30311278 CCAGAACAGATATTTGTGGCAGAGCTA
1 CCAGAACAGATA-TTGTGGCAGAGCTA
*
30311305 CCAAACACAGATATTTGTGGCA
1 CCAGA-ACAGATA-TTGTGGCA
30311327 AAGCCACTGT
Statistics
Matches: 67, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
26 12 0.18
27 39 0.58
28 16 0.24
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCTA
Found at i:30312721 original size:46 final size:46
Alignment explanation
Indices: 30312654--30312775 Score: 208
Period size: 46 Copynumber: 2.7 Consensus size: 46
30312644 CGCCCCTAAG
* * *
30312654 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
*
30312700 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
30312746 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
30312776 TGCTCAACCA
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAA
Found at i:30312794 original size:46 final size:45
Alignment explanation
Indices: 30312652--30312794 Score: 137
Period size: 46 Copynumber: 3.1 Consensus size: 45
30312642 CCCGCCCCTA
* ** * *
30312652 AGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTC-GCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
* *** *
30312697 AAATGAACTCGGACTCAACTCAACGAGTTCGGACATTC-GCATCCAT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCC-T
30312743 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-ACCATCCT
30312790 AGTGA
1 AGTGA
30312795 CATGTCACTT
Statistics
Matches: 86, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
46 80 0.93
47 1 0.01
48 5 0.06
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCACCATCCT
Found at i:30313232 original size:30 final size:30
Alignment explanation
Indices: 30313198--30313257 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
30313188 ATTTAATACG
30313198 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
30313228 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
30313258 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:30316406 original size:49 final size:48
Alignment explanation
Indices: 30316340--30316516 Score: 200
Period size: 49 Copynumber: 3.7 Consensus size: 48
30316330 GCTATTGTGA
* **
30316340 GGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACG-GTACCAGATAATT
* * * *
30316389 GGTCGCATATGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACG-GTACCAGATAA-TT
* *
30316439 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAC----CCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGGTACCAGATAATT
*
30316484 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
30316517 TGCATACCAG
Statistics
Matches: 111, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
44 31 0.28
45 2 0.02
46 7 0.06
49 39 0.35
50 2 0.02
51 30 0.27
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (48 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGGTACCAGATAATT
Found at i:30316515 original size:95 final size:96
Alignment explanation
Indices: 30316339--30316529 Score: 267
Period size: 95 Copynumber: 2.0 Consensus size: 96
30316329 AGCTATTGTG
**
30316339 AGGTCACATGTGTAGTACTAAGTGCAAGCTACTACGTGTACCAGATTGTTGGTCGCATATGTAGT
1 AGGTCACATGTGTAGTACTAAGTGCAAGCTACTAC--G--CCAGATAATTGGTCGCATATGTAGT
* *
30316404 ACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
62 ACTAAGTGCAGGCTACTATGCATACCAGATAACTT
* * * *
30316439 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTAC-CCGGATAATTGGTCGCATGTGTAGTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAAGCTACTACGCCAGATAATTGGTCGCATATGTAGTACTA
30316503 AGTGCAGGCTACTATGCATACCAGATA
66 AGTGCAGGCTACTATGCATACCAGATA
30316530 GCTTCGGCTA
Statistics
Matches: 83, Mismatches: 8, Indels: 5
0.86 0.08 0.05
Matches are distributed among these distances:
95 50 0.60
100 33 0.40
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (96 bp):
AGGTCACATGTGTAGTACTAAGTGCAAGCTACTACGCCAGATAATTGGTCGCATATGTAGTACTA
AGTGCAGGCTACTATGCATACCAGATAACTT
Found at i:30319310 original size:15 final size:15
Alignment explanation
Indices: 30319267--30319334 Score: 68
Period size: 15 Copynumber: 4.5 Consensus size: 15
30319257 TGGATTCTCG
*
30319267 TATCATGGATTTCTT
1 TATCTTGGATTTCTT
30319282 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
*
30319297 TATTCTTGGATTCTCTG
1 TA-TCTTGGATT-TCTT
* *
30319314 T-T-TTAGATTTCTC
1 TATCTTGGATTTCTT
30319327 TATCTTGG
1 TATCTTGG
30319335 TTTTTTTGGA
Statistics
Matches: 44, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
13 4 0.09
14 7 0.16
15 20 0.45
16 9 0.20
17 4 0.09
ACGTcount: A:0.15, C:0.15, G:0.15, T:0.56
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:30320901 original size:30 final size:30
Alignment explanation
Indices: 30320867--30320927 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
30320857 TTCCTGAGCC
*
30320867 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
* * * *
30320897 TAGGGGAAAAATTGTAATTTTGCCAAAGTT
1 TAGGGGAAAAAGTGTAAATATGCAAAAGTT
30320927 T
1 T
30320928 GATTTAAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAAATATGCAAAAGTT
Found at i:30321429 original size:49 final size:50
Alignment explanation
Indices: 30321362--30321533 Score: 229
Period size: 49 Copynumber: 3.4 Consensus size: 50
30321352 AGCTATTGTG
*
30321362 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
* * * * * *
30321412 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGATAACTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-AGTT
* * * *
30321462 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
30321512 AGGTCACGTGTGTAGTACTAAG
1 AGGTCACGTGTGTAGTACTAAG
30321534 AGATGAAGCA
Statistics
Matches: 102, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 40 0.39
50 24 0.24
51 38 0.37
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.30
Consensus pattern (50 bp):
AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTT
Found at i:30342305 original size:27 final size:28
Alignment explanation
Indices: 30342264--30342367 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 28
30342254 TGCTAGAACT
* *
30342264 GATA-TTGTGACAGAGTCACCAGATACA
1 GATATTTGTGGCAGAGCCACCAGATACA
* *
30342291 GATA-TTGTGGTAGAGCCACCA-AAACA
1 GATATTTGTGGCAGAGCCACCAGATACA
* *
30342317 GATATTTGTGGCAAAACCACCAGAT-CA
1 GATATTTGTGGCAGAGCCACCAGATACA
30342344 GATATTTGTGGCAGAGCCACCAGA
1 GATATTTGTGGCAGAGCCACCAGA
30342368 ACGCTTCCTC
Statistics
Matches: 65, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
26 8 0.12
27 56 0.86
28 1 0.02
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (28 bp):
GATATTTGTGGCAGAGCCACCAGATACA
Found at i:30354340 original size:13 final size:12
Alignment explanation
Indices: 30354318--30354360 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 12
30354308 GGGGTAGGAT
30354318 TCTGATTATCTGA
1 TCTG-TTATCTGA
30354331 TCTGTATATCTGA
1 TCTGT-TATCTGA
30354344 CTCTGTTATCTGTA
1 -TCTGTTATCTG-A
30354358 TCT
1 TCT
30354361 AAAATGGGCA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 1 0.04
13 20 0.74
14 6 0.22
ACGTcount: A:0.19, C:0.19, G:0.14, T:0.49
Consensus pattern (12 bp):
TCTGTTATCTGA
Found at i:30355353 original size:23 final size:23
Alignment explanation
Indices: 30355323--30355368 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
30355313 TGAAGGCTTG
30355323 CAGATTATGTTTACATGTTTGTA
1 CAGATTATGTTTACATGTTTGTA
30355346 CAGATTATGTTTACATGTTTGTA
1 CAGATTATGTTTACATGTTTGTA
30355369 TCTCAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.26, C:0.09, G:0.17, T:0.48
Consensus pattern (23 bp):
CAGATTATGTTTACATGTTTGTA
Found at i:30357726 original size:79 final size:79
Alignment explanation
Indices: 30357595--30357805 Score: 253
Period size: 79 Copynumber: 2.7 Consensus size: 79
30357585 GCAAGAAGAG
* ** * ** ** * *
30357595 AGCTTGCGAACTGGGATGGAGCTGCGAACTAATGAAGTGTGAACAGTCTCCAAAGGTTGCATGTG
1 AGCTTGCGAACTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAAGGCTGCATGCG
*
30357660 AGGTACAAACAAAA
66 AGCTACAAACAAAA
* * *
30357674 AGCTTG-TAAGCTGAGATGGAGCTGCGAACTGGTGCAATGCAAATGGTCTCCAAGGGCTGCATGC
1 AGCTTGCGAA-CTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAAGGCTGCATGC
*
30357738 GAGCTACAAACAAAG
65 GAGCTACAAACAAAA
* *
30357753 AGCTTGCGAACTGAGATGGAGCTGCGAACTGGTGAAATGCAAGTTGTCTCCAA
1 AGCTTGCGAACTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAA
30357806 GCACTGCATA
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
78 2 0.02
79 107 0.96
80 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.20
Consensus pattern (79 bp):
AGCTTGCGAACTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAAGGCTGCATGCG
AGCTACAAACAAAA
Found at i:30357828 original size:79 final size:79
Alignment explanation
Indices: 30357663--30357821 Score: 221
Period size: 79 Copynumber: 2.0 Consensus size: 79
30357653 GCATGTGAGG
* * *
30357663 TACAAACAAAAAGCTTGTAAGCTGAGATGGAGCTGCGAACTGGTGCAATGCAAATGGTCTCCAAG
1 TACAAACAAAGAGCTTGGAAGCTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAG
** * *
30357728 GGCTGCATGCGAGC
66 CACTGCATACAAGC
* *
30357742 TACAAACAAAGAGCTTGCGAA-CTGAGATGGAGCTGCGAACTGGTGAAATGCAAGTTGTCTCCAA
1 TACAAACAAAGAGCTTG-GAAGCTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAA
30357806 GCACTGCATACAAGC
65 GCACTGCATACAAGC
30357821 T
1 T
30357822 GTAAACAGAG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
79 68 0.97
80 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (79 bp):
TACAAACAAAGAGCTTGGAAGCTGAGATGGAGCTGCGAACTGGTGAAATGCAAATGGTCTCCAAG
CACTGCATACAAGC
Found at i:30362192 original size:16 final size:15
Alignment explanation
Indices: 30362171--30362214 Score: 52
Period size: 16 Copynumber: 2.8 Consensus size: 15
30362161 ATACATATAA
*
30362171 TTAGTTAAATTTAAAC
1 TTAGTT-AATTAAAAC
30362187 TTAGTTAATTAAAAC
1 TTAGTTAATTAAAAC
*
30362202 TTTAATTAATTAA
1 -TTAGTTAATTAA
30362215 CTAATTGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (15 bp):
TTAGTTAATTAAAAC
Found at i:30362527 original size:9 final size:9
Alignment explanation
Indices: 30362503--30362618 Score: 66
Period size: 10 Copynumber: 12.6 Consensus size: 9
30362493 AATTTTAAAT
30362503 ATTTTAATTA
1 ATTTT-ATTA
30362513 AGTTTTATTA
1 A-TTTTATTA
30362523 ATTTTA-T-
1 ATTTTATTA
30362530 ATTTT-TTA
1 ATTTTATTA
*
30362538 TAATTTATTA
1 -ATTTTATTA
*
30362548 GATTTAATTA
1 -ATTTTATTA
30362558 GATTTT-TTA
1 -ATTTTATTA
30362567 TATTTTA-TA
1 -ATTTTATTA
30362576 ATATTTA-TA
1 AT-TTTATTA
30362585 AGCTTTTA-TA
1 A--TTTTATTA
*
30362595 ATTTTAATA
1 ATTTTATTA
30362604 AGTTTTATTA
1 A-TTTTATTA
30362614 ATTTT
1 ATTTT
30362619 TATATTTTTA
Statistics
Matches: 88, Mismatches: 7, Indels: 23
0.75 0.06 0.19
Matches are distributed among these distances:
7 6 0.07
8 8 0.09
9 33 0.38
10 36 0.41
11 5 0.06
ACGTcount: A:0.34, C:0.01, G:0.04, T:0.61
Consensus pattern (9 bp):
ATTTTATTA
Found at i:30362579 original size:10 final size:9
Alignment explanation
Indices: 30362561--30362636 Score: 68
Period size: 9 Copynumber: 8.6 Consensus size: 9
30362551 TTAATTAGAT
30362561 TTTTTAT-A
1 TTTTTATAA
30362569 -TTTTATAA
1 TTTTTATAA
*
30362577 TATTTATAA
1 TTTTTATAA
*
30362586 GCTTTTATAA
1 -TTTTTATAA
*
30362596 TTTTAATAA
1 TTTTTATAA
*
30362605 GTTTTATTAA
1 TTTTTA-TAA
30362615 TTTTTAT-A
1 TTTTTATAA
*
30362623 TTTTTAAAA
1 TTTTTATAA
30362632 TTTTT
1 TTTTT
30362637 TATGCTTTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
7 6 0.11
8 8 0.15
9 25 0.46
10 15 0.28
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (9 bp):
TTTTTATAA
Found at i:30362591 original size:19 final size:17
Alignment explanation
Indices: 30362511--30362618 Score: 76
Period size: 19 Copynumber: 5.9 Consensus size: 17
30362501 ATATTTTAAT
30362511 TAAGTTTTATTAATTTTA
1 TAAGTTTTA-TAATTTTA
**
30362529 TATTTTTTATAA-TTTA
1 TAAGTTTTATAATTTTA
* * *
30362545 TTAGATTTAATTAGATTTTT
1 TAAG-TTTTA-TA-ATTTTA
30362565 TATA-TTTTATAATATTTA
1 TA-AGTTTTATAAT-TTTA
30362583 TAAGCTTTTATAATTTTAA
1 TAAG-TTTTATAATTTT-A
30362602 TAAGTTTTATTAATTTT
1 TAAGTTTTA-TAATTTT
30362619 TATATTTTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 19
0.71 0.10 0.19
Matches are distributed among these distances:
16 5 0.07
17 10 0.14
18 24 0.34
19 26 0.37
20 4 0.06
21 1 0.01
ACGTcount: A:0.33, C:0.01, G:0.05, T:0.61
Consensus pattern (17 bp):
TAAGTTTTATAATTTTA
Found at i:30362591 original size:28 final size:28
Alignment explanation
Indices: 30362531--30362663 Score: 71
Period size: 28 Copynumber: 4.8 Consensus size: 28
30362521 TAATTTTATA
* * * * *
30362531 TTTTTTATAATTTATTAGATTTAATTAGA
1 TTTTTTATATTTTATAATATTT-ATAAGC
30362560 TTTTTTATATTTTATAATATTTATAAGC
1 TTTTTTATATTTTATAATATTTATAAGC
*
30362588 TTTTATA-ATTTTAATAAGT-TTTATTAA--
1 TTTTTTATATTTT-ATAA-TATTTA-TAAGC
* * *
30362615 -TTTTTATATTTT-TAAAATTTTTTATGC
1 TTTTTTATATTTTATAATA-TTTATAAGC
* * *
30362642 TTTTTTCTATTTTTTATTATTT
1 TTTTTTATATTTTATAATATTT
30362664 TTATGAAAAA
Statistics
Matches: 81, Mismatches: 13, Indels: 21
0.70 0.11 0.18
Matches are distributed among these distances:
25 5 0.06
26 8 0.10
27 10 0.12
28 32 0.40
29 26 0.32
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (28 bp):
TTTTTTATATTTTATAATATTTATAAGC
Found at i:30362627 original size:9 final size:9
Alignment explanation
Indices: 30362524--30362665 Score: 63
Period size: 9 Copynumber: 15.3 Consensus size: 9
30362514 GTTTTATTAA
30362524 TTTTATATT
1 TTTTATATT
30362533 TTTTATAATT
1 TTTTAT-ATT
* *
30362543 TATTAGATT
1 TTTTATATT
* *
30362552 TAATTAGATT
1 T-TTTATATT
30362562 TTTTATA--
1 TTTTATATT
*
30362569 TTTTATAAT
1 TTTTATATT
* **
30362578 ATTTATAAGC
1 TTTTAT-ATT
*
30362588 TTTTATAAT
1 TTTTATATT
* **
30362597 TTTAATAAG
1 TTTTATATT
*
30362606 TTTTATTAAT
1 TTTTA-TATT
30362616 TTTTATATT
1 TTTTATATT
* *
30362625 TTTAAAATT
1 TTTTATATT
*
30362634 TTTTATGCTT
1 TTTTAT-ATT
*
30362644 TTTTCTATT
1 TTTTATATT
30362653 TTTTATTATT
1 TTTTA-TATT
30362663 TTT
1 TTT
30362666 ATGAAAAAAA
Statistics
Matches: 102, Mismatches: 23, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
7 7 0.07
9 51 0.50
10 44 0.43
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (9 bp):
TTTTATATT
Found at i:30363061 original size:22 final size:23
Alignment explanation
Indices: 30363031--30363076 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
30363021 TAGTAAATAA
*
30363031 GAATAA-TTTTATTTTTTATTTG
1 GAATAATTTTTATTTTTGATTTG
*
30363053 GAATTATTTTTATTTTTGATTTG
1 GAATAATTTTTATTTTTGATTTG
30363076 G
1 G
30363077 TTTTTTATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.63
Consensus pattern (23 bp):
GAATAATTTTTATTTTTGATTTG
Found at i:30366097 original size:122 final size:122
Alignment explanation
Indices: 30365934--30366177 Score: 434
Period size: 122 Copynumber: 2.0 Consensus size: 122
30365924 GAGGATATTA
30365934 ATACATTGCAGTAAGGAAACACATACATTAACCAAAGCATCTTACATGTACATCAGTAAACAAGC
1 ATACATTGCAGTAAGGAAACACATACATTAACCAAAGCATCTTACATGTACATCAGTAAACAAGC
* *
30365999 AGCTAAGATACATGCCTGGTAATGAGCAATTCTATCAAAGACACTAATAGTGATAAG
66 AGCTAAGATACATGCCTGATAATGAGCAATTCTAGCAAAGACACTAATAGTGATAAG
* * *
30366056 ATACATTGCAGTAAGGAAACGCATACATTAACTATAGCATCTTACATGTACATCAGTAAACAAGC
1 ATACATTGCAGTAAGGAAACACATACATTAACCAAAGCATCTTACATGTACATCAGTAAACAAGC
*
30366121 AGCTAAGATACATGCCTGATAATGAGCATTTCTAGCAAAGACACTAATAGTGATAAG
66 AGCTAAGATACATGCCTGATAATGAGCAATTCTAGCAAAGACACTAATAGTGATAAG
30366178 TGCCAGAGAT
Statistics
Matches: 116, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
122 116 1.00
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (122 bp):
ATACATTGCAGTAAGGAAACACATACATTAACCAAAGCATCTTACATGTACATCAGTAAACAAGC
AGCTAAGATACATGCCTGATAATGAGCAATTCTAGCAAAGACACTAATAGTGATAAG
Found at i:30369247 original size:131 final size:129
Alignment explanation
Indices: 30369009--30369341 Score: 436
Period size: 131 Copynumber: 2.6 Consensus size: 129
30368999 GAAAAACCGA
** * * * * * * *
30369009 AACCCAGCACAGTAGGGCACGATTCCTCTAATTTCTAGACATTGTACATTGCCTTGTTTT--AGA
1 AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTGTTTTAAAGA
** * * * **
30369072 ATTTAGAAAACATGAGTGAAATTCTAAAGGGACATTTGATTATTTTGGACAAACGGGAAATTGC
66 ATTTTTAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAAAAGGAAATTGC
*
30369136 AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTTCCTTCGTTTTAAAG
1 AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTT-GTTTTAAAG
*
30369201 AATTTTTAAAGACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAAAAGGAAATTG
65 AATTTTTAAA-ACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAAAAGGAAATTG
30369266 C
129 C
* * *
30369267 AACCCAGCATGATAGGGCACGATTCCCCGAATTGCCAAACATCGAACATCGCATTTGTTTTAAAG
1 AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGC-CTTGTTTTAAAG
30369332 AATTTTTAAA
65 AATTTTTAAA
30369342 TGGATAATTA
Statistics
Matches: 179, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
127 45 0.25
128 5 0.03
130 10 0.06
131 117 0.65
132 2 0.01
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (129 bp):
AACCCAGCATGGTAGGGCACGATTCCCCGAATTGCCAAACATCGAACATTGCCTTGTTTTAAAGA
ATTTTTAAAACATGAGTGAAATTCTAAAGGAACATTCGATTATTTTGAACAAAAAGGAAATTGC
Found at i:30385607 original size:26 final size:26
Alignment explanation
Indices: 30385571--30385654 Score: 150
Period size: 26 Copynumber: 3.2 Consensus size: 26
30385561 CATGAAATTC
30385571 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
* *
30385597 TTATCATGGAATATTTACCTAATCCA
1 TTATCATGGAACATTTACCTAACCCA
30385623 TTATCATGGAACATTTACCTAACCCA
1 TTATCATGGAACATTTACCTAACCCA
30385649 TTATCA
1 TTATCA
30385655 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.35, C:0.24, G:0.07, T:0.35
Consensus pattern (26 bp):
TTATCATGGAACATTTACCTAACCCA
Found at i:30402056 original size:36 final size:36
Alignment explanation
Indices: 30402009--30402084 Score: 125
Period size: 36 Copynumber: 2.1 Consensus size: 36
30401999 CATTCATCTT
* *
30402009 TTCTAAGTTCTCACAAAAGCTGAAAATGCAAATTCC
1 TTCTAAGTTCTCACAAAAGCCGAAAACGCAAATTCC
*
30402045 TTCTAAGTTCTCATAAAAGCCGAAAACGCAAATTCC
1 TTCTAAGTTCTCACAAAAGCCGAAAACGCAAATTCC
30402081 TTCT
1 TTCT
30402085 CCTTGGTGCC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.29
Consensus pattern (36 bp):
TTCTAAGTTCTCACAAAAGCCGAAAACGCAAATTCC
Found at i:30403919 original size:29 final size:29
Alignment explanation
Indices: 30403886--30403959 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
30403876 GTTGTGAGAT
* *
30403886 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
30403915 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
30403944 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
30403960 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:30415413 original size:20 final size:20
Alignment explanation
Indices: 30415388--30415437 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
30415378 ATAGGGAAAT
30415388 ATCGATACCTGATTATCAGG
1 ATCGATACCTGATTATCAGG
30415408 ATCGATACCTGATTATCAGG
1 ATCGATACCTGATTATCAGG
*
30415428 ATTGATACCT
1 ATCGATACCT
30415438 ATGAACATCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (20 bp):
ATCGATACCTGATTATCAGG
Found at i:30418066 original size:48 final size:48
Alignment explanation
Indices: 30418008--30418104 Score: 167
Period size: 48 Copynumber: 2.0 Consensus size: 48
30417998 ATCCGGCATC
30418008 AGCCCCAAAATCACTTATGTTTGACCCACCCTAGTAACTTGATGACAT
1 AGCCCCAAAATCACTTATGTTTGACCCACCCTAGTAACTTGATGACAT
* * *
30418056 AGCCCTAAAATCACTTATGTTTGATCCACCTTAGTAACTTGATGACAT
1 AGCCCCAAAATCACTTATGTTTGACCCACCCTAGTAACTTGATGACAT
30418104 A
1 A
30418105 CCTACCTGAG
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (48 bp):
AGCCCCAAAATCACTTATGTTTGACCCACCCTAGTAACTTGATGACAT
Found at i:30428077 original size:43 final size:42
Alignment explanation
Indices: 30428029--30428116 Score: 122
Period size: 42 Copynumber: 2.1 Consensus size: 42
30428019 ACATGGGATT
*
30428029 TCATATCAATGCTAATAGCCCAGCTATGGTCTTACACGAAATC
1 TCATATCAATG-TAATAGCCCAGATATGGTCTTACACGAAATC
* * * *
30428072 TCATATCGATGTCATATCTCAGATATGGTCTTACACGAAATC
1 TCATATCAATGTAATAGCCCAGATATGGTCTTACACGAAATC
30428114 TCA
1 TCA
30428117 ACTAACCCTA
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 30 0.75
43 10 0.25
ACGTcount: A:0.32, C:0.24, G:0.14, T:0.31
Consensus pattern (42 bp):
TCATATCAATGTAATAGCCCAGATATGGTCTTACACGAAATC
Found at i:30435927 original size:18 final size:21
Alignment explanation
Indices: 30435904--30435941 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
30435894 TATTTCATTG
30435904 TTTTT-ATTT-TT-ATTTTTT
1 TTTTTAATTTCTTCATTTTTT
30435922 TTTTTAATTTCTTCATTTTT
1 TTTTTAATTTCTTCATTTTT
30435942 CTTATTTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 2 0.12
21 6 0.35
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (21 bp):
TTTTTAATTTCTTCATTTTTT
Found at i:30437034 original size:13 final size:13
Alignment explanation
Indices: 30437016--30437046 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
30437006 CTATTTGTCC
30437016 TTATTTATTTTAT
1 TTATTTATTTTAT
30437029 TTATTTATTTTAT
1 TTATTTATTTTAT
30437042 TTATT
1 TTATT
30437047 ATTCATTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
TTATTTATTTTAT
Found at i:30437105 original size:24 final size:25
Alignment explanation
Indices: 30437075--30437124 Score: 77
Period size: 24 Copynumber: 2.0 Consensus size: 25
30437065 GAAATGTATA
30437075 TTTAAAATGTTT-TATA-ATATATTT
1 TTTAAAAT-TTTATATATATATATTT
30437099 TTTAAAATTTTATATATATATATTT
1 TTTAAAATTTTATATATATATATTT
30437124 T
1 T
30437125 AAATTATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
23 3 0.12
24 12 0.50
25 9 0.38
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (25 bp):
TTTAAAATTTTATATATATATATTT
Found at i:30437124 original size:23 final size:24
Alignment explanation
Indices: 30437071--30437127 Score: 75
Period size: 23 Copynumber: 2.5 Consensus size: 24
30437061 ATTTGAAATG
30437071 TATA-TTTAAAATGTTTTATAATA
1 TATATTTTAAAATGTTTTATAATA
*
30437094 TATTTTTTAAAA--TTTTATATATA
1 TATATTTTAAAATGTTTTATA-ATA
30437117 TATATTTTAAA
1 TATATTTTAAA
30437128 TTATTTTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
22 7 0.23
23 16 0.53
24 7 0.23
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
TATATTTTAAAATGTTTTATAATA
Found at i:30437129 original size:22 final size:22
Alignment explanation
Indices: 30437058--30437127 Score: 72
Period size: 23 Copynumber: 3.1 Consensus size: 22
30437048 TTCATTTTAA
* *
30437058 AAAATTTGA-AATGTATA-TTT
1 AAAATTTTATAATATATATTTT
*
30437078 AAAATGTTTTATAATATATTTTTT
1 AAAA--TTTTATAATATATATTTT
30437102 AAAATTTTATATATATATATTTT
1 AAAATTTTATA-ATATATATTTT
30437125 AAA
1 AAA
30437128 TTATTTTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
20 4 0.10
22 11 0.27
23 19 0.46
24 7 0.17
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.51
Consensus pattern (22 bp):
AAAATTTTATAATATATATTTT
Found at i:30437143 original size:20 final size:20
Alignment explanation
Indices: 30437120--30437176 Score: 75
Period size: 20 Copynumber: 3.0 Consensus size: 20
30437110 ATATATATAT
30437120 ATTTTAAATTATTTTTTAAA
1 ATTTTAAATTATTTTTTAAA
30437140 ATTTTAAA-T-TTTTTT-AA
1 ATTTTAAATTATTTTTTAAA
*
30437157 ATATTAAATATATTTTTTAA
1 ATTTTAAAT-TATTTTTTAA
30437177 TAATATCAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
17 9 0.28
18 6 0.19
19 2 0.06
20 14 0.44
21 1 0.03
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (20 bp):
ATTTTAAATTATTTTTTAAA
Found at i:30437152 original size:17 final size:17
Alignment explanation
Indices: 30437130--30437165 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
30437120 ATTTTAAATT
*
30437130 ATTTTTTAAAATTTTAA
1 ATTTTTTAAAATATTAA
*
30437147 ATTTTTTTAAATATTAA
1 ATTTTTTAAAATATTAA
30437164 AT
1 AT
30437166 ATATTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTTTTTAAAATATTAA
Found at i:30437178 original size:19 final size:18
Alignment explanation
Indices: 30437123--30437178 Score: 60
Period size: 19 Copynumber: 3.0 Consensus size: 18
30437113 TATATATATT
*
30437123 TTAAATTATTTTTTAAAATT
1 TTAAATTATTTTTT--AATA
*
30437143 TTAAATT-TTTTTAAATA
1 TTAAATTATTTTTTAATA
30437160 TTAAATATATTTTTTAATA
1 TTAAAT-TATTTTTTAATA
30437179 ATATCAAACA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 9 0.29
18 1 0.03
19 14 0.45
20 7 0.23
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (18 bp):
TTAAATTATTTTTTAATA
Found at i:30437203 original size:39 final size:39
Alignment explanation
Indices: 30437074--30437208 Score: 95
Period size: 37 Copynumber: 3.5 Consensus size: 39
30437064 TGAAATGTAT
* **
30437074 ATTTAAAATGTTTTATAATATATTTTTTAAAAT-T-TTAT-
1 ATTT-AAATATTTTA-AATATATTTTTTAAAATATCAAATC
* * * * *
30437112 ATATATATATTTTAAAT-TATTTTTTAAAATTTTAAATTT
1 ATTTAAATATTTTAAATATATTTTTTAAAATATCAAA-TC
*
30437151 TTTTAAATA--TTAAATATATTTTTTAATAATATCAAA-C
1 ATTTAAATATTTTAAATATATTTTTTAA-AATATCAAATC
*
30437188 ATTTAAATATTTTAAAGATAT
1 ATTTAAATATTTTAAATATAT
30437209 GACCTTTCAA
Statistics
Matches: 76, Mismatches: 13, Indels: 15
0.73 0.12 0.14
Matches are distributed among these distances:
35 13 0.17
36 4 0.05
37 23 0.30
38 14 0.18
39 22 0.29
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (39 bp):
ATTTAAATATTTTAAATATATTTTTTAAAATATCAAATC
Found at i:30437270 original size:16 final size:16
Alignment explanation
Indices: 30437231--30437279 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
30437221 TTATTATTAG
30437231 TTTTATAATATTTTAAA
1 TTTTA-AATATTTTAAA
*
30437248 -TGT--ATATTTTAAA
1 TTTTAAATATTTTAAA
*
30437261 TTTTAAATATTTTTAA
1 TTTTAAATATTTTAAA
30437277 TTT
1 TTT
30437280 ATTTTATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
13 10 0.38
14 2 0.08
16 14 0.54
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (16 bp):
TTTTAAATATTTTAAA
Found at i:30437270 original size:29 final size:29
Alignment explanation
Indices: 30437217--30437292 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 29
30437207 ATGACCTTTC
* *
30437217 AAATTTATTAT-TAGTTTTATAATATTTT
1 AAATTTATTTTATAATTTTATAATATTTT
30437245 AAATGTATATTTTA-AATTTTA-AATATTTT
1 AAAT-T-TATTTTATAATTTTATAATATTTT
*
30437274 TAATTTATTTTATAATTTT
1 AAATTTATTTTATAATTTT
30437293 TTAAATTATG
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
27 7 0.17
28 11 0.27
29 12 0.29
30 11 0.27
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (29 bp):
AAATTTATTTTATAATTTTATAATATTTT
Found at i:30437283 original size:20 final size:22
Alignment explanation
Indices: 30437260--30437321 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 22
30437250 TATATTTTAA
30437260 ATTTTAAATATTTTTAATT-T-
1 ATTTTAAATATTTTTAATTATG
30437280 ATTTTATAAT-TTTTTAAATTATG
1 ATTTTA-AATATTTTT-AATTATG
30437303 ATTTTTAAATTATTTTTAA
1 A-TTTTAAA-TATTTTTAA
30437322 AGATATTCAA
Statistics
Matches: 35, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
20 11 0.31
21 7 0.20
22 1 0.03
23 3 0.09
24 8 0.23
25 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (22 bp):
ATTTTAAATATTTTTAATTATG
Found at i:30437293 original size:29 final size:30
Alignment explanation
Indices: 30437231--30437298 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 30
30437221 TTATTATTAG
30437231 TTTTATAATATTTTAAATGTATATTTTAAA-
1 TTTTA-AATATTTTAAATGTATATTTTAAAT
*
30437261 TTTTAAATATTTTTAAT-T-TATTTTATAATT
1 TTTTAAATATTTTAAATGTATATTTTA-AA-T
30437291 TTTTAAAT
1 TTTTAAAT
30437299 TATGATTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
27 7 0.21
28 3 0.09
29 11 0.32
30 13 0.38
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.62
Consensus pattern (30 bp):
TTTTAAATATTTTAAATGTATATTTTAAAT
Found at i:30437322 original size:11 final size:11
Alignment explanation
Indices: 30437261--30437322 Score: 51
Period size: 10 Copynumber: 5.6 Consensus size: 11
30437251 ATATTTTAAA
30437261 TTTTAAA-TAT
1 TTTTAAATTAT
*
30437271 TTTTAATTTA-
1 TTTTAAATTAT
30437281 TTTTATAA-T-T
1 TTTTA-AATTAT
30437291 TTTTAAATTATGAT
1 TTTTAAA-T-T-AT
30437305 TTTTAAATTAT
1 TTTTAAATTAT
30437316 TTTTAAA
1 TTTTAAA
30437323 GATATTCAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 15
0.71 0.03 0.25
Matches are distributed among these distances:
9 2 0.05
10 17 0.40
11 12 0.29
12 2 0.05
13 1 0.02
14 8 0.19
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (11 bp):
TTTTAAATTAT
Found at i:30437474 original size:15 final size:17
Alignment explanation
Indices: 30437438--30437474 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
30437428 TTATTTGTTA
30437438 AAAAATATGACTATATT
1 AAAAATATGACTATATT
*
30437455 TAAAATAT-AC-ATATT
1 AAAAATATGACTATATT
30437470 AAAAA
1 AAAAA
30437475 ATAAAATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
15 9 0.50
16 2 0.11
17 7 0.39
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (17 bp):
AAAAATATGACTATATT
Found at i:30438703 original size:44 final size:44
Alignment explanation
Indices: 30438652--30438735 Score: 123
Period size: 44 Copynumber: 1.9 Consensus size: 44
30438642 TATGAGGCAA
* * *
30438652 CTGAACTCATTGAATTGTTTCGAGTTCATTATGGACGCGAGCAT
1 CTGAACTCATTGAATTGGTCCGAGTTCATAATGGACGCGAGCAT
* *
30438696 CTGAACTCGTTGAATTGGTCCGAGTTCATAATGGATGCGA
1 CTGAACTCATTGAATTGGTCCGAGTTCATAATGGACGCGA
30438736 TATATGTAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 35 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (44 bp):
CTGAACTCATTGAATTGGTCCGAGTTCATAATGGACGCGAGCAT
Found at i:30442883 original size:30 final size:28
Alignment explanation
Indices: 30442843--30442901 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
30442833 GGAGTTAAGG
*
30442843 GAAGATCGGGTAATTCAAAGGGAGGTCT
1 GAAGAGCGGGTAATTCAAAGGGAGGTCT
30442871 NNGAAGAGCGGGTAATTCAAAGGGAGGTCT
1 --GAAGAGCGGGTAATTCAAAGGGAGGTCT
30442901 G
1 G
30442902 TAGTAGTTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 1 0.04
30 27 0.96
ACGTcount: A:0.31, C:0.10, G:0.37, T:0.19
Consensus pattern (28 bp):
GAAGAGCGGGTAATTCAAAGGGAGGTCT
Found at i:30449968 original size:56 final size:59
Alignment explanation
Indices: 30449845--30449969 Score: 141
Period size: 58 Copynumber: 2.2 Consensus size: 59
30449835 ACTTAATCAC
* *
30449845 TTTAATATTAAATTAATATAATACTTATCAAGATAAATATTAGATTAAATTTAACATTA
1 TTTAATATTAAATTAATAAAATACTTATCAAGATAAATATAAGATTAAATTTAACATTA
** * * * * *
30449904 AAT-CTATTAAATTAATAAAATATTTATCTATA-AAATA-AATATTAAATTTAA-ATTA
1 TTTAATATTAAATTAATAAAATACTTATCAAGATAAATATAAGATTAAATTTAACATTA
30449959 TTTAATATTAA
1 TTTAATATTAA
30449970 GATAATCACA
Statistics
Matches: 53, Mismatches: 12, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
55 5 0.09
56 18 0.34
57 5 0.09
58 24 0.45
59 1 0.02
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (59 bp):
TTTAATATTAAATTAATAAAATACTTATCAAGATAAATATAAGATTAAATTTAACATTA
Found at i:30450498 original size:19 final size:19
Alignment explanation
Indices: 30450460--30450499 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
30450450 AAAATATCAT
*
30450460 ATTAATTTTAATTAATTTG
1 ATTAATTTTAATTAACTTG
* *
30450479 ATTAATTTTATTTTACTTG
1 ATTAATTTTAATTAACTTG
30450498 AT
1 AT
30450500 CAAAATTAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTAATTTTAATTAACTTG
Found at i:30452989 original size:15 final size:15
Alignment explanation
Indices: 30452967--30453004 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
30452957 TTTCAAATGA
30452967 TTTT-ATTTCTCCAT
1 TTTTCATTTCTCCAT
*
30452981 TTTTCATTT-TTCAT
1 TTTTCATTTCTCCAT
30452995 TTTTCATTTC
1 TTTTCATTTC
30453005 GGAGAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.13, C:0.18, G:0.00, T:0.68
Consensus pattern (15 bp):
TTTTCATTTCTCCAT
Found at i:30452997 original size:6 final size:7
Alignment explanation
Indices: 30452978--30453003 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
30452968 TTTATTTCTC
30452978 CATTTTT
1 CATTTTT
30452985 CATTTTT
1 CATTTTT
30452992 CATTTTT
1 CATTTTT
30452999 CATTT
1 CATTT
30453004 CGGAGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:30454371 original size:26 final size:28
Alignment explanation
Indices: 30454328--30454383 Score: 89
Period size: 26 Copynumber: 2.1 Consensus size: 28
30454318 AAGATTGTTA
*
30454328 AAACTCTTCTAAAAGAAAACTTAAAGAG
1 AAACTCTTCTAAAAGAAAACTCAAAGAG
30454356 AAACT-TT-TAAAAGAAAACTCAAAGAG
1 AAACTCTTCTAAAAGAAAACTCAAAGAG
30454382 AA
1 AA
30454384 TTTTATTAGC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
26 20 0.74
27 2 0.07
28 5 0.19
ACGTcount: A:0.57, C:0.12, G:0.11, T:0.20
Consensus pattern (28 bp):
AAACTCTTCTAAAAGAAAACTCAAAGAG
Found at i:30456492 original size:47 final size:46
Alignment explanation
Indices: 30456380--30456650 Score: 266
Period size: 47 Copynumber: 5.8 Consensus size: 46
30456370 GATTACTTGT
* * * *
30456380 GTGCCAGTGTAAGACATGTCTGGGACATGCAT-TA-GCCACATTATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACG-TAGA-GATGA
*
30456426 GTGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACGTAGAGATGA
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGACGTAGAGATGA
* *
30456474 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGATGATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACGTAGA-GATGA
*
30456521 -TAGCCAGTGTAAGACATGTCTGGGACATGCATCGAC-TA-AGA-GTT
1 GT-GCCAGTGTAAGACATGTCTGGGACATGCATCGACGTAGAGATG-A
* * * *
30456565 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCACGTATATATGA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-G-ACGTAGAGATGA
* * *
30456613 GAGCTAGTGTAAGACCATGTCTAGGACATGGCATCGAC
1 GTGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGAC
30456651 AACTTATCCC
Statistics
Matches: 195, Mismatches: 15, Indels: 28
0.82 0.06 0.12
Matches are distributed among these distances:
43 1 0.01
44 31 0.16
45 3 0.02
46 29 0.15
47 67 0.34
48 39 0.20
49 19 0.10
50 6 0.03
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACGTAGAGATGA
Found at i:30456545 original size:94 final size:92
Alignment explanation
Indices: 30456380--30456650 Score: 336
Period size: 94 Copynumber: 2.9 Consensus size: 92
30456370 GATTACTTGT
*
30456380 GTGCCAGTGTAAGACATGTCTGGGACATGCATTAGCCAC-ATTATGAGT-GCCAGTGTAAGACCA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCA-CCACGATTATGA-TAGCCAGTGTAAGACCA
*
30456443 TGTTTGGGACATGGCATCGACGT-AGAGATGA
64 TGTCTGGGACATGGCATCGAC-TAAGAG-T-A
* *
30456474 GTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCTCGATGATGATAGCCAGTGTAAGA-CAT
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATC-ACCACGATTATGATAGCCAGTGTAAGACCAT
*
30456538 GTCTGGGACAT-GCATCGACTAAGAGTT
65 GTCTGGGACATGGCATCGACTAAGAGTA
* * * * *
30456565 GTGCTAGTGTAAGACATGTCTAGGACATGCATCAGCACGTATATATGAGAGCTAGTGTAAGACCA
1 GTGCCAGTGTAAGACATGTCTGGGACATGCATCACCACG-AT-TATGATAGCCAGTGTAAGACCA
*
30456630 TGTCTAGGACATGGCATCGAC
64 TGTCTGGGACATGGCATCGAC
30456651 AACTTATCCC
Statistics
Matches: 156, Mismatches: 13, Indels: 16
0.84 0.07 0.09
Matches are distributed among these distances:
90 4 0.03
91 33 0.21
92 18 0.12
93 25 0.16
94 57 0.37
95 19 0.12
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (92 bp):
GTGCCAGTGTAAGACATGTCTGGGACATGCATCACCACGATTATGATAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCGACTAAGAGTA
Found at i:30456647 original size:141 final size:139
Alignment explanation
Indices: 30456382--30456650 Score: 332
Period size: 141 Copynumber: 1.9 Consensus size: 139
30456372 TTACTTGTGT
* *
30456382 GCCAGTGTAAGACATGTCTGGGACATGCATTAGCCACATTATGAGTGCCAGTGTAAGACCATGTT
1 GCCAGTGTAAGACATGTCTGGGACATGCATTA-CCACA-TAAGAGTGCCAGTGTAAGACCATGTC
* * *
30456447 TGGGACATGGCATCGACGTAGAGATGAGTGCCAGTGTAAGACATGTCTGGGACATGCATCGACCT
64 TAGGACATGGCATCGACGTAGAGATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCT
30456512 CGATGATGATA
129 CGATGATGATA
* *
30456523 GCCAGTGTAAGACATGTCTGGGACATGCA-T-CGAC-TAAGAGTTGTGCTAGTGTAAGA-CATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATTACCACATAAGA---GTGCCAGTGTAAGACCATGT
* * *
30456584 CTAGGACAT-GCATCAGCACGTATATATGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCATC
63 CTAGGACATGGCATC-G-ACGTAGAGATGAGAGCCAGTGTAAGA-CATGTCTAGGACAT-GCATC
30456648 GAC
124 GAC
30456651 AACTTATCCC
Statistics
Matches: 111, Mismatches: 10, Indels: 14
0.82 0.07 0.10
Matches are distributed among these distances:
136 4 0.04
137 5 0.05
138 16 0.14
139 35 0.32
140 14 0.13
141 37 0.33
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (139 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATTACCACATAAGAGTGCCAGTGTAAGACCATGTCTA
GGACATGGCATCGACGTAGAGATGAGAGCCAGTGTAAGACATGTCTAGGACATGCATCGACCTCG
ATGATGATA
Found at i:30458276 original size:35 final size:35
Alignment explanation
Indices: 30458230--30458303 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 35
30458220 GTTGTATACT
30458230 CTTTATGATGGCTTAGTTGTGATCTTTTAAGAAGG
1 CTTTATGATGGCTTAGTTGTGATCTTTTAAGAAGG
* *
30458265 CTTTATGATGGCTTATTTGTGATCTTTTAGGAAGG
1 CTTTATGATGGCTTAGTTGTGATCTTTTAAGAAGG
30458300 CTTT
1 CTTT
30458304 GATTATATTG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.20, C:0.09, G:0.24, T:0.46
Consensus pattern (35 bp):
CTTTATGATGGCTTAGTTGTGATCTTTTAAGAAGG
Found at i:30459156 original size:22 final size:23
Alignment explanation
Indices: 30459131--30459173 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
30459121 TGGAATAATT
30459131 ACTTGCTT-AGCTAAATTAGTTA
1 ACTTGCTTCAGCTAAATTAGTTA
* *
30459153 ACTTGGTTCAGCTCAATTAGT
1 ACTTGCTTCAGCTAAATTAGT
30459174 CCATGCATTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (23 bp):
ACTTGCTTCAGCTAAATTAGTTA
Found at i:30459534 original size:54 final size:53
Alignment explanation
Indices: 30459476--30459579 Score: 138
Period size: 54 Copynumber: 1.9 Consensus size: 53
30459466 GCTTGTAGGT
* **
30459476 GACTATTTAGTTGGAATCAATTATGTACAA-GGGCTGTTACAAAGTAATAAATGC
1 GACTATTCAGTTGGAATCAATTACATACAAGGGGCTGTTAC-AA-TAATAAATGC
**
30459530 GACTATTCAGTTGGAATCGGTTACATACAAGGGGCTGTTACAATAATAAA
1 GACTATTCAGTTGGAATCAATTACATACAAGGGGCTGTTACAATAATAAA
30459580 AGGAGAGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
53 7 0.16
54 27 0.61
55 10 0.23
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (53 bp):
GACTATTCAGTTGGAATCAATTACATACAAGGGGCTGTTACAATAATAAATGC
Found at i:30461308 original size:31 final size:31
Alignment explanation
Indices: 30461273--30461340 Score: 82
Period size: 31 Copynumber: 2.2 Consensus size: 31
30461263 TTTTGTTTTG
*
30461273 GTCACTGAACTATTCGAAAGTTTTCACTTAA
1 GTCACTGAACTATTCAAAAGTTTTCACTTAA
* * * * *
30461304 GTCACAGAGCTATTCAAAATTTTTTATTTAA
1 GTCACTGAACTATTCAAAAGTTTTCACTTAA
30461335 GTCACT
1 GTCACT
30461341 AGGTTGTTAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAGTTTTCACTTAA
Found at i:30463331 original size:26 final size:26
Alignment explanation
Indices: 30463288--30463337 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
30463278 TAATGGCTAT
*
30463288 TCTCTCTTCCCCCCCCCCCCCCCCAC
1 TCTCTCTTCCCCCACCCCCCCCCCAC
* *
30463314 TCTCTCNTCTCCCACCCCCCCCCC
1 TCTCTCTTCCCCCACCCCCCCCCC
30463338 CTTAATTCTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.04, C:0.74, G:0.00, T:0.20
Consensus pattern (26 bp):
TCTCTCTTCCCCCACCCCCCCCCCAC
Found at i:30463347 original size:28 final size:27
Alignment explanation
Indices: 30463286--30463352 Score: 64
Period size: 29 Copynumber: 2.4 Consensus size: 27
30463276 TGTAATGGCT
30463286 ATTCTCTCTTCCCCCCCCCCCCCCCC-
1 ATTCTCTCTTCCCCCCCCCCCCCCCCA
* **
30463312 ACTCTCTCNTCTCCCACCCCCCCCCCCTTA
1 ATTCTCTC-T-TCCC-CCCCCCCCCCCCCA
30463342 ATTCTCATCTT
1 ATTCTC-TCTT
30463353 ATTTAATTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
26 7 0.22
27 1 0.03
28 4 0.12
29 12 0.38
30 6 0.19
31 2 0.06
ACGTcount: A:0.09, C:0.61, G:0.00, T:0.28
Consensus pattern (27 bp):
ATTCTCTCTTCCCCCCCCCCCCCCCCA
Found at i:30465421 original size:8 final size:8
Alignment explanation
Indices: 30465408--30465438 Score: 53
Period size: 8 Copynumber: 3.8 Consensus size: 8
30465398 AACTCAAAGG
30465408 AAAAAATAA
1 AAAAAAT-A
30465417 AAAAAATA
1 AAAAAATA
30465425 AAAAAATA
1 AAAAAATA
30465433 AAAAAA
1 AAAAAA
30465439 ACTGTTGCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 15 0.68
9 7 0.32
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAAAATA
Found at i:30465422 original size:9 final size:9
Alignment explanation
Indices: 30465408--30465439 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
30465398 AACTCAAAGG
30465408 AAAAAATAA
1 AAAAAATAA
30465417 AAAAAAT-A
1 AAAAAATAA
30465425 AAAAAATAA
1 AAAAAATAA
30465434 AAAAAA
1 AAAAAA
30465440 CTGTTGCTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.91, C:0.00, G:0.00, T:0.09
Consensus pattern (9 bp):
AAAAAATAA
Found at i:30465624 original size:18 final size:18
Alignment explanation
Indices: 30465592--30465634 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
30465582 CTAATTCTTT
*
30465592 AAACTAAATATTAAAA-A
1 AAACTAAATAATAAAATA
30465609 AAACTGAAATAATAAAATA
1 AAACT-AAATAATAAAATA
30465628 AAA-TAAA
1 AAACTAAA
30465635 ATATTTTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 8 0.35
18 11 0.48
19 4 0.17
ACGTcount: A:0.72, C:0.05, G:0.02, T:0.21
Consensus pattern (18 bp):
AAACTAAATAATAAAATA
Found at i:30468644 original size:282 final size:282
Alignment explanation
Indices: 30468140--30469521 Score: 1801
Period size: 282 Copynumber: 4.9 Consensus size: 282
30468130 CATTGTTTAC
* * * * ** * * * *
30468140 ACCTGAAGAATGCGGCAGCTTAGCTGGATCAGATTCCCGG-CCTTGTTGGACAGCATTATGTA-A
1 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATT-TCGGAAGTTGTCGAACAGCTTTATCTATA
* * *** *
30468203 TTCCTTCAGAGATCTTGCCTCCACAACAGGTAATTTTGATTTGTTATCTGTGTCATCCTGTG--G
65 -TCCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGAT-CTG-GCAG
* * * * * *
30468266 TTCCACAATCATACTTGGAACAATTACTTCCTCAACATCAGCTCCTTCATGCAGTTGCTTAAAAG
127 TTTCTCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAG
*
30468331 CCAAATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAATCTCAGTCTTC
192 CCAAATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTCTCAGTCTTC
*
30468396 ATATCTTTTGATGGTTCATTCCTTGA
257 ATATCTTTTGATGATTCATTCCTTGA
* * * *
30468422 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTTGAATAGCTTTGTCTATGT
1 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATAT
*
30468487 CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGGTCTGGCAGTTTC
66 CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTC
* *
30468552 TCAATCATACTCGGAACAATTACTTCCTCAATGTCAACTCCTTCATAAAGTTGCTTAAAAGCCAA
131 TCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCCAA
* * * ** **
30468617 ATCAATATCTTCGGCTGGTCTTGCTTCAAAAACTGGCAGCACCACATTAGTCTTGGTCTTCGCAT
196 ATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTCTCAGTCTTCATAT
*
30468682 CTTTTGATGATTCAATCCTTGA
261 CTTTTGATGATTCATTCCTTGA
* ** * * * *
30468704 GCCTGAAGAA--T---A--T--GCTGGATTAGATTTCACAAGTTGTTGAATAGCTTTGTCTAAAT
1 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATAT
* *
30468760 CCTCCAGAGATCTTGCCTCAACAACAGGTAATTTTGATTTGTTATCTCCAAGATCTGGCAGTTTC
66 CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTC
* * **
30468825 TCAATCATACTCGGAACAATTACTTCCTCGACATTGACTCCTTCATGAAGTTGCTTAAAAGCCAA
131 TCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCCAA
* * * * *
30468890 ATCAATATCTTCTGCTGACCTTGTTTCAAGAACTGGAAGCACCACATTAGTCTCAGT-ATCGTTA
196 ATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTCTCAGTCTTC-ATA
* *
30468954 TCTGTTAATGATTCATTCCTT-A
260 TCTTTTGATGATTCATTCCTTGA
* *
30468976 AGCCTGAAGAATGTGGCGGCTCAGCTGGATTAGA-TTCTGGAAGTTGTCGAACAGCTTTATGTAT
1 A-CCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTC-GGAAGTTGTCGAACAGCTTTATCTAT
*
30469040 ATCCTCCAGAGATCTTGCCTCGACAATAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTT
64 ATCCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTT
* *
30469105 TCTCGATCATACTTGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCC
129 TCTCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCC
* * * *
30469170 AAATCAATATCTTCAGCTGATCTTGGTTCAAGAA-TAGGCAGCACCACATTAGTCTCAGTTTTCG
194 AAATCAATATCTTCTGCTGATCTTGCTTCAAGAACT-GGCAGCACCACATTAGTCTCAGTCTTCA
30469234 TATCTTTTGATGATTCATTCCTTGA
258 TATCTTTTGATGATTCATTCCTTGA
* * * *
30469259 GCCTGAAGAATGTGGCGGCTCAGCTGGATTAGATTCCGGAAGTTGTCGAACAGCTTTATGTATAT
1 ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATAT
* * *
30469324 CCTCCAGAGACCTTGCCTCGAAAACAGGTAATTTTGATTTGTTACCTCCATGATCTGGCAGTTTC
66 CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTC
** * * *
30469389 TTGATCATACTCGGAACAGTTACTTCCTCAACGTCGACTCCTTCATGAAGTTGCTTAAAAGTCAA
131 TCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCCAA
* ** *
30469454 ATAAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACTGCATTAGTCTTC-GCCTTCATA
196 ATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTC-TCAGTCTTCATA
30469518 TCTT
260 TCTT
30469522 CCTGTAACAA
Statistics
Matches: 968, Mismatches: 110, Indels: 44
0.86 0.10 0.04
Matches are distributed among these distances:
272 3 0.00
273 237 0.24
275 2 0.00
277 1 0.00
280 3 0.00
281 10 0.01
282 704 0.73
283 8 0.01
ACGTcount: A:0.26, C:0.23, G:0.18, T:0.34
Consensus pattern (282 bp):
ACCTGAAGAATGTGGCAGCTCAGCTGGATTAGATTTCGGAAGTTGTCGAACAGCTTTATCTATAT
CCTCCAGAGATCTTGCCTCGACAACAGGTAATTTTGATTTGTTATCTCCATGATCTGGCAGTTTC
TCAATCATACTCGGAACAATTACTTCCTCAACGTCAACTCCTTCATGAAGTTGCTTAAAAGCCAA
ATCAATATCTTCTGCTGATCTTGCTTCAAGAACTGGCAGCACCACATTAGTCTCAGTCTTCATAT
CTTTTGATGATTCATTCCTTGA
Done.