Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 108 of 186
Found at i:35626626 original size:22 final size:22
Alignment explanation
Indices: 35626565--35626631 Score: 91
Period size: 22 Copynumber: 3.1 Consensus size: 22
35626555 TTTTATATAC
35626565 TTTTAAT-AATTTTTAATAATT
1 TTTTAATAAATTTTTAATAATT
**
35626586 TTTTTCTAAATTTTTAATAATT
1 TTTTAATAAATTTTTAATAATT
* *
35626608 TTTTAATAAATTTTAAATACTT
1 TTTTAATAAATTTTTAATAATT
35626630 TT
1 TT
35626632 CTATATTTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
21 5 0.13
22 34 0.87
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (22 bp):
TTTTAATAAATTTTTAATAATT
Found at i:35629224 original size:16 final size:15
Alignment explanation
Indices: 35629194--35629228 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
35629184 GCACATAATA
35629194 TTTTAATTGTTTTAT
1 TTTTAATTGTTTTAT
*
35629209 TTTTATATTTTTTTAT
1 TTTTA-ATTGTTTTAT
35629225 TTTT
1 TTTT
35629229 TTTTACTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTTAATTGTTTTAT
Found at i:35630724 original size:33 final size:33
Alignment explanation
Indices: 35630687--35630824 Score: 82
Period size: 33 Copynumber: 4.3 Consensus size: 33
35630677 TAATATTAAT
35630687 TATTTATAAAATTTAATTCGAATATATAAACTA
1 TATTTATAAAATTTAATTCGAATATATAAACTA
* * * * *
35630720 TATTTA-AATATTTAAATATAGTTTATATATTCGAATTA
1 TATTTATAAAATTT-AAT-TCG--AATATA-T-AAACTA
*
35630758 AATTT-TATAAA--TAATT--AATAT-T-AA-T-
1 TATTTATA-AAATTTAATTCGAATATATAAACTA
35630783 TATTTATAAAATTTAATTCGAATATATAAACTA
1 TATTTATAAAATTTAATTCGAATATATAAACTA
35630816 TATTT-TAAA
1 TATTTATAAA
35630825 TATTAAAATA
Statistics
Matches: 79, Mismatches: 9, Indels: 35
0.64 0.07 0.28
Matches are distributed among these distances:
25 7 0.09
26 3 0.04
27 7 0.09
29 6 0.08
30 1 0.01
31 6 0.08
32 11 0.14
33 14 0.18
34 2 0.03
35 1 0.01
36 8 0.10
37 2 0.03
38 9 0.11
39 2 0.03
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (33 bp):
TATTTATAAAATTTAATTCGAATATATAAACTA
Found at i:35630735 original size:19 final size:19
Alignment explanation
Indices: 35630707--35630750 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
35630697 ATTTAATTCG
*
35630707 AATATATAAACTATA-TTTA
1 AATATTTAAA-TATAGTTTA
35630726 AATATTTAAATATAGTTTA
1 AATATTTAAATATAGTTTA
*
35630745 TATATT
1 AATATT
35630751 CGAATTAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 4 0.18
19 18 0.82
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (19 bp):
AATATTTAAATATAGTTTA
Found at i:35630786 original size:96 final size:97
Alignment explanation
Indices: 35630659--35630836 Score: 315
Period size: 96 Copynumber: 1.8 Consensus size: 97
35630649 AATATAAATT
*
35630659 TTAAATATTTTAAGTAATTAATATTAATTATTTATAAAATTTAATTCGAATATATAAACTATA-T
1 TTAAATATTTTAAATAATTAATATTAATTATTTATAAAATTTAATTCGAATATATAAACTATATT
*
35630723 TTAAATATTTAAATATAGTTTATATATTCGAA
66 TTAAATATTAAAATATAGTTTATATATTCGAA
35630755 TTAAAT-TTTATAAATAATTAATATTAATTATTTATAAAATTTAATTCGAATATATAAACTATAT
1 TTAAATATTT-TAAATAATTAATATTAATTATTTATAAAATTTAATTCGAATATATAAACTATAT
35630819 TTTAAATATTAAAATATA
65 TTTAAATATTAAAATATA
35630837 ACCAATAAAA
Statistics
Matches: 78, Mismatches: 2, Indels: 3
0.94 0.02 0.04
Matches are distributed among these distances:
95 3 0.04
96 58 0.74
97 17 0.22
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (97 bp):
TTAAATATTTTAAATAATTAATATTAATTATTTATAAAATTTAATTCGAATATATAAACTATATT
TTAAATATTAAAATATAGTTTATATATTCGAA
Found at i:35633299 original size:37 final size:37
Alignment explanation
Indices: 35633248--35633322 Score: 141
Period size: 37 Copynumber: 2.0 Consensus size: 37
35633238 AGTTAGCATG
*
35633248 CACCGAACCGTGTTCAAAAGAGTTCGATTAGTTCTCT
1 CACCGAACCATGTTCAAAAGAGTTCGATTAGTTCTCT
35633285 CACCGAACCATGTTCAAAAGAGTTCGATTAGTTCTCT
1 CACCGAACCATGTTCAAAAGAGTTCGATTAGTTCTCT
35633322 C
1 C
35633323 TACAACTCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.29
Consensus pattern (37 bp):
CACCGAACCATGTTCAAAAGAGTTCGATTAGTTCTCT
Found at i:35640804 original size:16 final size:15
Alignment explanation
Indices: 35640770--35640812 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
35640760 ATTCTATTCA
*
35640770 AAAT-TAATAATAAT
1 AAATATAATTATAAT
*
35640784 TAATATATATTATAAT
1 AAATATA-ATTATAAT
35640800 AAATATAATTATA
1 AAATATAATTATA
35640813 TACTAGTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 3 0.12
15 8 0.33
16 13 0.54
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
AAATATAATTATAAT
Found at i:35643787 original size:49 final size:49
Alignment explanation
Indices: 35643681--35643953 Score: 149
Period size: 49 Copynumber: 5.7 Consensus size: 49
35643671 CGGTTAAGAT
* * * * *
35643681 GCCGGTGCTATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAG
1 GCCGATGCCATGTCCCAGA-AAGGTCTTACACTAGCTCTCATATAGCGAG
* * *
35643731 GCCGATGCCATGTCCCAGATAGGTCTTACACTAGCTCTCATCTATCG-G
1 GCCGATGCCATGTCCCAGAAAGGTCTTACACTAGCTCTCATATAGCGAG
** * * * ** *
35643779 TGTTGATGCCATGTCCCAAAAAGGTCTTACACTA--ACACA-CCA-C-AA
1 -GCCGATGCCATGTCCCAGAAAGGTCTTACACTAGCTCTCATATAGCGAG
** * * * *
35643824 GTTGACGCCATGTCCCA-AACAGGTCTTACGCTAGCT-TGTATATCGCGAG
1 GCCGATGCCATGTCCCAGAA-AGGTCTTACACTAGCTCT-CATATAGCGAG
* * * * * *
35643873 CCCGATG-CATGTCCCAGACATGTCTTACACTAGCTCTCATCT--CAAT
1 GCCGATGCCATGTCCCAGAAAGGTCTTACACTAGCTCTCATATAGCGAG
*
35643919 GCCGATG-CATGTCCCA-AACATGTCTTACACTAGCT
1 GCCGATGCCATGTCCCAGAA-AGGTCTTACACTAGCT
35643954 TAAATATCTT
Statistics
Matches: 173, Mismatches: 38, Indels: 28
0.72 0.16 0.12
Matches are distributed among these distances:
43 2 0.01
44 28 0.16
45 2 0.01
46 36 0.21
47 3 0.02
48 28 0.16
49 57 0.33
50 17 0.10
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (49 bp):
GCCGATGCCATGTCCCAGAAAGGTCTTACACTAGCTCTCATATAGCGAG
Found at i:35643888 original size:48 final size:47
Alignment explanation
Indices: 35643832--35644046 Score: 161
Period size: 46 Copynumber: 4.6 Consensus size: 47
35643822 AAGTTGACGC
* * * * *
35643832 CATGTCCCAAACAGGTCTTACGCTAGCTTGTATATCGCGA-GCCCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTTCT-CATCGCAATG-CCGATG
* *
35643880 CATGTCCCAGACATGTCTTACACTAGC-TCTCATCTCAATGCCGATG
1 CATGTCCCAAACATGTCTTACACTAGCTTCTCATCGCAATGCCGATG
* ** * *
35643926 CATGTCCCAAACATGTCTTACACTAGCTTAAAT-ATCTTAAGGCTGATG
1 CATGTCCCAAACATGTCTTACACTAGCTT--CTCATCGCAATGCCGATG
* * * * *** *
35643974 CATGTCCTAGACATGTCTTACACTGGC-TCTAAT-GTTGTGGCTGATG
1 CATGTCCCAAACATGTCTTACACTAGCTTCTCATCGCAAT-GCCGATG
*
35644020 CATGTTCCAAACATGTCTTACACTAGC
1 CATGTCCCAAACATGTCTTACACTAGC
35644047 ACATATATCA
Statistics
Matches: 137, Mismatches: 24, Indels: 14
0.78 0.14 0.08
Matches are distributed among these distances:
45 2 0.01
46 69 0.50
47 5 0.04
48 60 0.44
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (47 bp):
CATGTCCCAAACATGTCTTACACTAGCTTCTCATCGCAATGCCGATG
Found at i:35643940 original size:46 final size:45
Alignment explanation
Indices: 35643874--35644046 Score: 177
Period size: 46 Copynumber: 3.7 Consensus size: 45
35643864 TATCGCGAGC
* *
35643874 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAATG
1 CCGATGCATGTCCCAAACATGTCTTACACTAGCTCTAATCT-AATG
*
35643920 CCGATGCATGTCCCAAACATGTCTTACACTAGCT-TAAATATCTTAAGG
1 CCGATGCATGTCCCAAACATGTCTTACACTAGCTCT--A-ATC-TAATG
* * * * * **
35643968 CTGATGCATGTCCTAGACATGTCTTACACTGGCTCTAATGTTGTGG
1 CCGATGCATGTCCCAAACATGTCTTACACTAGCTCTAATCTAAT-G
* *
35644014 CTGATGCATGTTCCAAACATGTCTTACACTAGC
1 CCGATGCATGTCCCAAACATGTCTTACACTAGC
35644047 ACATATATCA
Statistics
Matches: 106, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 2 0.02
46 65 0.61
47 1 0.01
48 36 0.34
49 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (45 bp):
CCGATGCATGTCCCAAACATGTCTTACACTAGCTCTAATCTAATG
Found at i:35643946 original size:94 final size:94
Alignment explanation
Indices: 35643832--35644046 Score: 261
Period size: 94 Copynumber: 2.3 Consensus size: 94
35643822 AAGTTGACGC
* * ** *
35643832 CATGTCCCAAACAGGTCTTACGCTAGCTTGTATATCGCGAGCCCGATGCATGTCCCAGACATGTC
1 CATGTCCCAAACATGTCTTACACTAGCTTAAATATCGCAAGCCCGATGCATGTCCCAGACATGTC
*
35643897 TTACACTAGCTCTCATCTCAAT-GCCGATG
66 TTACACTAGCTCTAATCT-AATGGCCGATG
** * * *
35643926 CATGTCCCAAACATGTCTTACACTAGCTTAAATATCTTAAGGCTGATGCATGTCCTAGACATGTC
1 CATGTCCCAAACATGTCTTACACTAGCTTAAATATCGCAAGCCCGATGCATGTCCCAGACATGTC
* * ** *
35643991 TTACACTGGCTCTAATGTTGTGGCTGATG
66 TTACACTAGCTCTAATCTAATGGCCGATG
*
35644020 CATGTTCCAAACATGTCTTACACTAGC
1 CATGTCCCAAACATGTCTTACACTAGC
35644047 ACATATATCA
Statistics
Matches: 103, Mismatches: 17, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
93 1 0.01
94 102 0.99
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (94 bp):
CATGTCCCAAACATGTCTTACACTAGCTTAAATATCGCAAGCCCGATGCATGTCCCAGACATGTC
TTACACTAGCTCTAATCTAATGGCCGATG
Found at i:35643993 original size:142 final size:141
Alignment explanation
Indices: 35643690--35643950 Score: 323
Period size: 141 Copynumber: 1.9 Consensus size: 141
35643680 TGCCGGTGCT
* * *
35643690 ATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAGGCCGATGCCATGTCCCAGATAGGT
1 ATGTCCCAGACAT-GTCTTACACTAGCTTTCATATAGCGAGCCCGATGCCATGTCCCAGACAGGT
** ** *
35643755 CTTACACTAGCTCTCATCTATCGGTGTTGATGCCATGTCCCAAAAAGGTCTTACACTAACACACC
65 CTTACACTAGCTCTCATC-ATCAATGCCGATGCCATGTCCCAAAAAGGTCTTACACTAACACAAC
*
35643820 ACAAGTTGACGCC
129 ACAAGCTGACGCC
* * * * *
35643833 ATGTCCCAAACAGGTCTTACGCTAGCTTGT-ATATCGCGAGCCCGATG-CATGTCCCAGACATGT
1 ATGTCCCAGACATGTCTTACACTAGCTT-TCATATAGCGAGCCCGATGCCATGTCCCAGACAGGT
* *
35643896 CTTACACTAGCTCTCATC-TCAATGCCGATG-CATGTCCCAAACATGTCTTACACTA
65 CTTACACTAGCTCTCATCATCAATGCCGATGCCATGTCCCAAAAAGGTCTTACACTA
35643951 GCTTAAATAT
Statistics
Matches: 103, Mismatches: 14, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
138 23 0.22
139 8 0.08
141 32 0.31
142 28 0.27
143 12 0.12
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (141 bp):
ATGTCCCAGACATGTCTTACACTAGCTTTCATATAGCGAGCCCGATGCCATGTCCCAGACAGGTC
TTACACTAGCTCTCATCATCAATGCCGATGCCATGTCCCAAAAAGGTCTTACACTAACACAACAC
AAGCTGACGCC
Found at i:35646749 original size:18 final size:18
Alignment explanation
Indices: 35646726--35646776 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
35646716 CCACCTTCGT
35646726 TGGTAATCAATCACCAAC
1 TGGTAATCAATCACCAAC
*
35646744 TGGTAATCAATCATCAAC
1 TGGTAATCAATCACCAAC
35646762 TGGTAATCAATCACC
1 TGGTAATCAATCACC
35646777 TTTTCGGGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (18 bp):
TGGTAATCAATCACCAAC
Found at i:35654937 original size:49 final size:49
Alignment explanation
Indices: 35654865--35654986 Score: 147
Period size: 49 Copynumber: 2.5 Consensus size: 49
35654855 TGCTGACGCT
*
35654865 ATGTCCCAGACATGGTCTTACACTGGCTTTCATATAGCGAG-GCCAATGCC
1 ATGTCCCAGACA-GGTCTTACACTGGCTCTCATATAGCG-GTGCCAATGCC
* * * * *
35654915 ATGTCCTAGACAGGTCTTACACTGGCTCTCATCTATCGGTGTCGATGCC
1 ATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGGTGCCAATGCC
* *
35654964 GTGTCCCAAACAGGTCTTACACT
1 ATGTCCCAGACAGGTCTTACACT
35654987 AACACACCAC
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 1 0.02
49 50 0.81
50 11 0.18
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (49 bp):
ATGTCCCAGACAGGTCTTACACTGGCTCTCATATAGCGGTGCCAATGCC
Found at i:35655073 original size:48 final size:48
Alignment explanation
Indices: 35655021--35655175 Score: 179
Period size: 48 Copynumber: 3.3 Consensus size: 48
35655011 TCCTAGACGG
* * *
35655021 GTCTTACACTAGCTTGTATATCGCAAGGCCGATGCATGTCCCAGACAT
1 GTCTTACACTAGCTTATATATCTCAAGGCCGATGCATGTCCCAAACAT
* * ** * *
35655069 GTCTTACATTAGC-TCT-CGTCTCAATGCCGATGCATGTCTCAAACAT
1 GTCTTACACTAGCTTATATATCTCAAGGCCGATGCATGTCCCAAACAT
* * * *
35655115 GTCTTACACTGGCTTAAATATCTCGAGGCCAATGCATGTCCCAAACAT
1 GTCTTACACTAGCTTATATATCTCAAGGCCGATGCATGTCCCAAACAT
35655163 GTCTTACACTAGC
1 GTCTTACACTAGC
35655176 ATACATATGA
Statistics
Matches: 86, Mismatches: 19, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
46 35 0.41
47 3 0.03
48 48 0.56
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (48 bp):
GTCTTACACTAGCTTATATATCTCAAGGCCGATGCATGTCCCAAACAT
Found at i:35669084 original size:13 final size:14
Alignment explanation
Indices: 35669062--35669095 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
35669052 TTGTATTGGT
35669062 AACT-TTTAAAA-A
1 AACTATTTAAAATA
35669074 AACTATTTAAAATA
1 AACTATTTAAAATA
35669088 AACTATTT
1 AACTATTT
35669096 CGTGTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 4 0.20
13 7 0.35
14 9 0.45
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (14 bp):
AACTATTTAAAATA
Found at i:35669878 original size:30 final size:30
Alignment explanation
Indices: 35669844--35669903 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
35669834 TATTTTATTA
35669844 TTAATTTTGTTATTATTTTAAAGACATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
* *
35669874 TTAATTTTGTTATTATTTTAGAGATATTTG
1 TTAATTTTGTTATTATTTTAAAGACATTTG
35669904 CTTGATAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.28, C:0.02, G:0.12, T:0.58
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTG
Found at i:35670022 original size:18 final size:19
Alignment explanation
Indices: 35669985--35670027 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
35669975 GAAAAATATT
*
35669985 TATTTTGATGTTTTTAATA
1 TATTTTGATGTTATTAATA
35670004 T-TTTTGATG-TATTACATA
1 TATTTTGATGTTATTA-ATA
35670022 TATTTT
1 TATTTT
35670028 AAAATTATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 12 0.57
19 5 0.24
ACGTcount: A:0.26, C:0.02, G:0.09, T:0.63
Consensus pattern (19 bp):
TATTTTGATGTTATTAATA
Found at i:35673146 original size:14 final size:13
Alignment explanation
Indices: 35673121--35673175 Score: 51
Period size: 14 Copynumber: 4.1 Consensus size: 13
35673111 TGTAGGTGTC
35673121 TGAAAAAA-AAAA
1 TGAAAAAATAAAA
35673133 TGAAAAAATCAAAA
1 TGAAAAAAT-AAAA
35673147 T-AAATCAAATAAAA
1 TGAAA--AAATAAAA
*
35673161 TTAAAAAATTAAAA
1 TGAAAAAA-TAAAA
35673175 T
1 T
35673176 TTTACCGTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
12 8 0.22
13 6 0.16
14 16 0.43
15 7 0.19
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (13 bp):
TGAAAAAATAAAA
Found at i:35677001 original size:22 final size:23
Alignment explanation
Indices: 35676974--35677019 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
35676964 TTAGATTAGT
*
35676974 GAAATTAAAA-TAAAATTAAAAA
1 GAAATTAAAAGAAAAATTAAAAA
35676996 GAAATTAAAAGGAAAAATTAAAAA
1 GAAATTAAAA-GAAAAATTAAAAA
35677020 TTTTGTATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 10 0.48
24 11 0.52
ACGTcount: A:0.72, C:0.00, G:0.09, T:0.20
Consensus pattern (23 bp):
GAAATTAAAAGAAAAATTAAAAA
Found at i:35680318 original size:23 final size:23
Alignment explanation
Indices: 35680292--35680362 Score: 74
Period size: 22 Copynumber: 3.2 Consensus size: 23
35680282 TCAATGATTG
*
35680292 TTTAGACTTGATCTAAAATTGGT
1 TTTAGACTTGATCTAAAATTTGT
* * ** *
35680315 TTTATA-ATGAGATAAGATTTG-
1 TTTAGACTTGATCTAAAATTTGT
35680336 TTTAGACTTGATCTAAAATTTGT
1 TTTAGACTTGATCTAAAATTTGT
35680359 TTTA
1 TTTA
35680363 TAATGAGATA
Statistics
Matches: 35, Mismatches: 11, Indels: 4
0.70 0.22 0.08
Matches are distributed among these distances:
21 5 0.14
22 21 0.60
23 9 0.26
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.46
Consensus pattern (23 bp):
TTTAGACTTGATCTAAAATTTGT
Found at i:35680341 original size:44 final size:44
Alignment explanation
Indices: 35680289--35680377 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
35680279 ACTTCAATGA
35680289 TTGTTTAGACTTGATCTAAAATTGGTTTTATAATGAGATAAGAT
1 TTGTTTAGACTTGATCTAAAATTGGTTTTATAATGAGATAAGAT
*
35680333 TTGTTTAGACTTGATCTAAAATTTGTTTTATAATGAGATAAGAT
1 TTGTTTAGACTTGATCTAAAATTGGTTTTATAATGAGATAAGAT
35680377 T
1 T
35680378 GAAGATACTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.34, C:0.04, G:0.17, T:0.45
Consensus pattern (44 bp):
TTGTTTAGACTTGATCTAAAATTGGTTTTATAATGAGATAAGAT
Found at i:35684732 original size:19 final size:20
Alignment explanation
Indices: 35684710--35684748 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
35684700 TCATTTCATC
35684710 TCAAGA-TTTTCATA-CCATT
1 TCAAGAGTTTT-ATATCCATT
35684729 TCAAGAGTTTTATATCCATT
1 TCAAGAGTTTTATATCCATT
35684749 GAATCATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (20 bp):
TCAAGAGTTTTATATCCATT
Found at i:35686968 original size:17 final size:17
Alignment explanation
Indices: 35686946--35686988 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
35686936 AAATGGGCTA
35686946 TGTGGGCCCCACGAGCT
1 TGTGGGCCCCACGAGCT
35686963 TGTGGGCCCCACGAGCT
1 TGTGGGCCCCACGAGCT
*
35686980 CGTGGGCCC
1 TGTGGGCCC
35686989 TATATGGGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.09, C:0.37, G:0.37, T:0.16
Consensus pattern (17 bp):
TGTGGGCCCCACGAGCT
Found at i:35689103 original size:17 final size:17
Alignment explanation
Indices: 35689081--35689131 Score: 66
Period size: 17 Copynumber: 2.9 Consensus size: 17
35689071 GCATATCTGA
*
35689081 ACTGTTATTGTTACTGC
1 ACTGTTACTGTTACTGC
*
35689098 ACTGTTACTGTTGCTGC
1 ACTGTTACTGTTACTGC
*
35689115 ATTGTTTACTGTTACTG
1 ACTG-TTACTGTTACTG
35689132 TAATGGGCCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 18 0.62
18 11 0.38
ACGTcount: A:0.16, C:0.18, G:0.20, T:0.47
Consensus pattern (17 bp):
ACTGTTACTGTTACTGC
Found at i:35692157 original size:30 final size:30
Alignment explanation
Indices: 35692123--35692184 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
35692113 CAAACATTAT
35692123 AAGTATGAATCAAATAGATATTATTTAATC
1 AAGTATGAATCAAATAGATATTATTTAATC
35692153 AAGTATGAATCAAATAGATATTATTTAATC
1 AAGTATGAATCAAATAGATATTATTTAATC
35692183 AA
1 AA
35692185 ATCAATCATC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.48, C:0.06, G:0.10, T:0.35
Consensus pattern (30 bp):
AAGTATGAATCAAATAGATATTATTTAATC
Found at i:35694385 original size:7 final size:7
Alignment explanation
Indices: 35694373--35694397 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
35694363 ATGGTTGATG
35694373 AATTAGT
1 AATTAGT
35694380 AATTAGT
1 AATTAGT
35694387 AATTAGT
1 AATTAGT
35694394 AATT
1 AATT
35694398 GATGAATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (7 bp):
AATTAGT
Found at i:35701693 original size:56 final size:56
Alignment explanation
Indices: 35701602--35701830 Score: 273
Period size: 56 Copynumber: 4.1 Consensus size: 56
35701592 TCTTACATGT
** * * * **
35701602 AATCACATATCGATGCC-ACTGTCCTAGACAG-GGTCTTACTCGAACACATAAATCAA
1 AATCACATATCGATGCCAAC-GTATTAAAC-GTGGTCTTACTCGCACACATATATCGG
* *
35701658 AATCACATATCAATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATACCGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGG
* *
35701714 AATCACATATCGATGCCAACGTATTAAATGTGGTCTTACTTGCACACATATATCGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGG
* * * * *
35701770 AATCACATATCGATGGCAACGTATTAAACATGGTCTTACTCACACATCACATATTGG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACA-CATATATCGG
35701827 AATC
1 AATC
35701831 CTATGTCATG
Statistics
Matches: 150, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
55 1 0.01
56 135 0.90
57 14 0.09
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.27
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGG
Found at i:35702644 original size:17 final size:19
Alignment explanation
Indices: 35702622--35702659 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
35702612 AAACTAGTTG
35702622 AAAACCTATTT-TATA-TT
1 AAAACCTATTTGTATACTT
*
35702639 AAAACCTCTTTGTATACTT
1 AAAACCTATTTGTATACTT
35702658 AA
1 AA
35702660 CGAGTTTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 4 0.22
19 4 0.22
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (19 bp):
AAAACCTATTTGTATACTT
Found at i:35711536 original size:7 final size:7
Alignment explanation
Indices: 35711524--35711548 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
35711514 ATGGTTGATG
35711524 AATTAGT
1 AATTAGT
35711531 AATTAGT
1 AATTAGT
35711538 AATTAGT
1 AATTAGT
35711545 AATT
1 AATT
35711549 GATGAATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (7 bp):
AATTAGT
Found at i:35712485 original size:7 final size:7
Alignment explanation
Indices: 35712475--35712505 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
35712465 AATGATGGAA
35712475 GATGAGG
1 GATGAGG
35712482 GATGAGG
1 GATGAGG
*
35712489 GATGATG
1 GATGAGG
35712496 GATGAGG
1 GATGAGG
35712503 GAT
1 GAT
35712506 CAAATGAGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.52, T:0.19
Consensus pattern (7 bp):
GATGAGG
Found at i:35717453 original size:56 final size:56
Alignment explanation
Indices: 35717387--35717525 Score: 215
Period size: 56 Copynumber: 2.5 Consensus size: 56
35717377 CCACTGTCCC
* * **
35717387 AAACAGGGTCTTACTCACACACATATATCGGAATCACATATCGATGCCAACATATT
1 AAACATGGTCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACATATT
* * *
35717443 AAACGTGGTCTTACTCGCATACATATATCAAAATCACATATCGATGCCAACGTATT
1 AAACATGGTCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACATATT
35717499 AAACATGGTCTTACTCGCACACATATA
1 AAACATGGTCTTACTCGCACACATATA
35717526 GCGATGCCAT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 74 1.00
ACGTcount: A:0.37, C:0.24, G:0.12, T:0.27
Consensus pattern (56 bp):
AAACATGGTCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACATATT
Found at i:35719051 original size:12 final size:12
Alignment explanation
Indices: 35719030--35719058 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
35719020 AGTATAAGCT
35719030 TCAT-TTGAAAA
1 TCATCTTGAAAA
35719041 TCATCTTGAAAA
1 TCATCTTGAAAA
35719053 TCATCT
1 TCATCT
35719059 AAATCAACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.38, C:0.17, G:0.07, T:0.38
Consensus pattern (12 bp):
TCATCTTGAAAA
Found at i:35728576 original size:22 final size:22
Alignment explanation
Indices: 35728548--35728610 Score: 108
Period size: 22 Copynumber: 2.8 Consensus size: 22
35728538 TATCCCCACA
35728548 TGGAGTGTAGGGCTGGATACAG
1 TGGAGTGTAGGGCTGGATACAG
35728570 TGGAGTGTAGGGCTGGATACAG
1 TGGAGTGTAGGGCTGGATACAG
*
35728592 TGGAGTGTAGAGGATGGAT
1 TGGAGTGTAG-GGCTGGAT
35728611 GGGTAGGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
22 32 0.82
23 7 0.18
ACGTcount: A:0.24, C:0.06, G:0.46, T:0.24
Consensus pattern (22 bp):
TGGAGTGTAGGGCTGGATACAG
Found at i:35743028 original size:48 final size:48
Alignment explanation
Indices: 35742848--35743017 Score: 205
Period size: 48 Copynumber: 3.5 Consensus size: 48
35742838 GGGTTGATGA
* * **
35742848 GATCCCTTATAAGACCATATCTGGGATATGGCATCAGCATCGATATGT
1 GATCCCATATAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* * * *
35742896 GATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCGTTATGT
1 GATCCCATATAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* * * **
35742944 GATCCCATGTAATACCATGTCTGGGACATGGCATTGGCATCGATAAAT
1 GATCCCATATAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
* *
35742992 GGTCCCATATAAGACCATATTTGGGA
1 GATCCCATATAAGACCATATCTGGGA
35743018 TGTGACATTG
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 104 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (48 bp):
GATCCCATATAAGACCATATCTGGGACATGGCATTGGCATCGATATGT
Found at i:35745555 original size:19 final size:20
Alignment explanation
Indices: 35745531--35745568 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
35745521 GGTACCACCA
35745531 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
35745550 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
35745569 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:35745860 original size:46 final size:45
Alignment explanation
Indices: 35745793--35745964 Score: 154
Period size: 46 Copynumber: 3.7 Consensus size: 45
35745783 AACCCGCCCC
*
35745793 TAAGTGAACTC-GAACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCAG-ACTCAACTCAACGAGTTCGGGCGTT-GCATCCA
* * *
35745839 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT--T
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTGCATCCA
* * * * *
35745887 TCA-CGAACTCAGACTCAACTCAACGAGTTCAGACATTTGCATCCA
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGC-GTTGCATCCA
*
35745932 TAAGTGAACTCAGACTCAACTCAACGAATTCGG
1 TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
35745965 ATGCTCAACC
Statistics
Matches: 102, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
43 6 0.06
44 1 0.01
45 2 0.02
46 56 0.55
47 27 0.26
48 3 0.03
49 1 0.01
50 3 0.03
51 3 0.03
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.23
Consensus pattern (45 bp):
TAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTGCATCCA
Found at i:35745907 original size:93 final size:93
Alignment explanation
Indices: 35745798--35745968 Score: 263
Period size: 93 Copynumber: 1.8 Consensus size: 93
35745788 GCCCCTAAGT
* * * *
35745798 GAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
*
35745863 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAATTCGGATGCCTAGTTACATTTCAC
* *
35745891 GAACTC-AGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCAGACTCAACTCA
1 GAACTCGA-ACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCA
35745955 ACGAATTCGGATGC
65 ACGAATTCGGATGC
35745969 TCAACCATCC
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 1 0.01
93 69 0.99
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCAGACATTCGCATCCATAAGTGAACTCAGACTCAACTCAA
CGAATTCGGATGCCTAGTTACATTTCAC
Found at i:35746558 original size:30 final size:30
Alignment explanation
Indices: 35746524--35746584 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
35746514 CATTTAATAC
35746524 AAACTTTGGAAAAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
* * *
35746554 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACACTTTTGCCCCT
35746584 A
1 A
35746585 GGCTCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACACTTTTGCCCCT
Found at i:35755450 original size:40 final size:40
Alignment explanation
Indices: 35755413--35755719 Score: 347
Period size: 40 Copynumber: 7.7 Consensus size: 40
35755403 GCTACTCGTT
*
35755413 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * *
35755453 CAAATGCCTTTGGCACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
35755493 CAAATGCCTTC-GGATCTTAGTCCGGATTTATAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-TT-TAGTAACTCGCA
*
35755535 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
35755575 CAAATGCCTTC-AGATCTTAGTCTGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* *
35755615 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * *
35755654 TAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
35755695 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
35755720 CATCATTCAA
Statistics
Matches: 225, Mismatches: 31, Indels: 22
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 34 0.15
40 137 0.61
41 17 0.08
42 32 0.14
43 3 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:35755537 original size:82 final size:80
Alignment explanation
Indices: 35755413--35755719 Score: 390
Period size: 82 Copynumber: 3.8 Consensus size: 80
35755403 GCTACTCGTT
* * *
35755413 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTTGGCACTTAACCC
1 CAAATGCCTTC-GGATCTTAGTCCGGATTATAGTAACTCGCACAAATGCCTTCGG-ACTTAACCC
35755476 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
35755493 CAAATGCCTTCGGATCTTAGTCCGGATTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTCGGATCTTAGTCCGGA-TTATAGTAACTCGCACAAATGCCTTC-GGACTTAACCC
35755558 GGATTTAGTAACTCGCA
64 GGATTTAGTAACTCGCA
* * * * *
35755575 CAAATGCCTTCAGATCTTAGTCTGGATT-TAGTAACTCGTACAAATGCCTTCGGGCTTAGCCCGG
1 CAAATGCCTTCGGATCTTAGTCCGGATTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
* *
35755639 AATTAGTATCTCGCA
66 ATTTAGTAACTCGCA
* * * * *
35755654 TAAATGCCTTCGGATCTTAGTCCGGA-TATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGATCTTAGTCCGGATTATAGTAAC-TCGCACAAATGCCTTC-GGACTTAACCC
35755717 GGA
64 GGA
35755720 CATCATTCAA
Statistics
Matches: 202, Mismatches: 18, Indels: 14
0.86 0.08 0.06
Matches are distributed among these distances:
78 1 0.00
79 61 0.30
80 61 0.30
81 2 0.01
82 75 0.37
83 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGATCTTAGTCCGGATTATAGTAACTCGCACAAATGCCTTCGGACTTAACCCGG
ATTTAGTAACTCGCA
Found at i:35755618 original size:122 final size:119
Alignment explanation
Indices: 35755413--35755666 Score: 332
Period size: 122 Copynumber: 2.1 Consensus size: 119
35755403 GCTACTCGTT
* **
35755413 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGCACTTAACCCGG
1 CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCAGCACTTAACCCGG
* * *
35755478 ATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTATAGTAACTCGCA
66 ATTTAGTAACTCGCACAAATGCCTTCGG-GCTTAGCCCGGA-AT-TAGTAACTCGCA
* ** *
35755535 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCACAAATGCCTTCAG-ATCTTAGTCT
1 CAAATGCCTTCGGGACATAACCCGG-TTATAGTAACTCGCACAAATGCCTTCAGCA-CTTAACCC
* *
35755598 GGATTTAGTAACTCGTACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
64 GGATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
*
35755654 TAAATGCCTTCGG
1 CAAATGCCTTCGG
35755667 ATCTTAGTCC
Statistics
Matches: 117, Mismatches: 13, Indels: 7
0.85 0.09 0.05
Matches are distributed among these distances:
119 23 0.20
120 1 0.01
121 11 0.09
122 80 0.68
123 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (119 bp):
CAAATGCCTTCGGGACATAACCCGGTTATAGTAACTCGCACAAATGCCTTCAGCACTTAACCCGG
ATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTAACTCGCA
Found at i:35755713 original size:119 final size:122
Alignment explanation
Indices: 35755413--35755704 Score: 326
Period size: 122 Copynumber: 2.4 Consensus size: 122
35755403 GCTACTCGTT
* * * * ** ** *
35755413 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTTGGCA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCAG-ATCTTAGTCTG
* * *
35755477 GATTTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGATTTATAGTAACTCGCA
65 GATTTAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGGATATATAGTAACTCGCA
* *
35755535 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCAGATCTTAGTCTGG
1 CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCAGATCTTAGTCTGG
* *
35755600 ATTTAGTAACTCGTACAAATGCCTTCGG-GCTTAGCCCGGA-AT-TAGTATCTCGCA
66 ATTTAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGGATATATAGTAACTCGCA
* ** * *
35755654 TAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTC
1 CAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACAAATGCCTTC
35755705 GGGACTTAGC
Statistics
Matches: 146, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
118 3 0.02
119 42 0.29
120 9 0.06
121 11 0.08
122 81 0.55
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (122 bp):
CAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACAAATGCCTTCAGATCTTAGTCTGG
ATTTAGTAACTCGCACAAATGCCTTCGGAGCTTAGCCCGGATATATAGTAACTCGCA
Found at i:35766696 original size:50 final size:50
Alignment explanation
Indices: 35766616--35766960 Score: 325
Period size: 50 Copynumber: 6.9 Consensus size: 50
35766606 TCCTTTGTGA
*
35766616 GTCACATGTGTAGTACTAAGTGCAGACTACTATGTGTACCAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* * * * * * *
35766666 GTCGCATGTGTAGTACTATGTGTAGGCTACTATGCGTACCTG-TTAACTTTG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--TAG
* * ** * * * *
35766717 ATCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
** * * *
35766767 GTCATGTGAGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* * * * *
35766817 GTCTCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCG-TTAACTTCG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGA--TAG
* * * * ** *
35766868 ATCACGTGTGCAATACTAAGTGCAGGCTACTACATGTACTAGATTGATAG
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
* *
35766918 GTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGA
1 GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA
35766961 GAGCTTCGGT
Statistics
Matches: 226, Mismatches: 63, Indels: 12
0.75 0.21 0.04
Matches are distributed among these distances:
49 6 0.03
50 148 0.65
51 68 0.30
52 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.30
Consensus pattern (50 bp):
GTCACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATTGATAG
Found at i:35766797 original size:101 final size:100
Alignment explanation
Indices: 35766617--35766798 Score: 240
Period size: 101 Copynumber: 1.8 Consensus size: 100
35766607 CCTTTGTGAG
** * *
35766617 TCACATGTGTAGTACTAAGTGCAGACTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGTAC
1 TCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATGGATAAGTC-CATGTGTAGTAC
* *
35766682 TATGTGTAGGCTACTATGCGTACCTGTTAACTTTGA
65 TAAGTGCAGGCTACTATGCGTACCTGTTAACTTTGA
* * * *
35766718 TCACGTGTGTAGTACTAAGTGCAGGCTACTACATGTATCAGATGGTTAAGT-CATGTGAGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATGGATAAGTCCATGT--GTAGTA
35766782 CTAAGTGCAGGCTACTA
64 CTAAGTGCAGGCTACTA
35766799 CGTGTACCAA
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
99 5 0.07
101 64 0.93
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAGTGCAGACTACTACATGTACCAGATGGATAAGTCCATGTGTAGTACT
AAGTGCAGGCTACTATGCGTACCTGTTAACTTTGA
Found at i:35766889 original size:151 final size:150
Alignment explanation
Indices: 35766615--35766958 Score: 503
Period size: 151 Copynumber: 2.3 Consensus size: 150
35766605 ATCCTTTGTG
* *
35766615 AGTCACATGTGTAGTACTAAGTGCAGACTACTATGTGTACCAGATTGATAGGTCGCATGTGTAGT
1 AGTC-CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATTGATAGGTCGCATGTGTAGT
* * * * * *
35766680 ACTATGTGTAGGCTACTATGCGTACCTGTTAACTTTGATCACGTGTGTAGTACTAAGTGCAGGCT
65 ACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGCAATACTAAGTGCAGGCT
*
35766745 ACTACATGTA-TCAGATGGTTA
130 ACTACATGTACT-AGATGGATA
* *
35766766 AGT-CATGTGAGTAGTACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCTCATGTGTAG
1 AGTCCATGT--GTAGTACTAAGTGCAGGCTACTATGTGTACCAAATTGATAGGTCGCATGTGTAG
35766830 TACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGCAATACTAAGTGCAGGC
64 TACTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGCAATACTAAGTGCAGGC
*
35766895 TACTACATGTACTAGATTGATA
129 TACTACATGTACTAGATGGATA
* *
35766917 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA
1 AGTC-CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCA
35766959 GAGAGCTTCG
Statistics
Matches: 173, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
149 5 0.03
151 162 0.94
152 1 0.01
153 5 0.03
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (150 bp):
AGTCCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAAATTGATAGGTCGCATGTGTAGTA
CTAAGTGCAGGCTACTATGCGTACCCGTTAACTTCGATCACGTGTGCAATACTAAGTGCAGGCTA
CTACATGTACTAGATGGATA
Found at i:35766968 original size:101 final size:101
Alignment explanation
Indices: 35766780--35766973 Score: 307
Period size: 101 Copynumber: 1.9 Consensus size: 101
35766770 ATGTGAGTAG
* *
35766780 TACTAAGTGCAGGCTACTACGTGTACCAAATTGATAGGTCTCATGTGTAGTACTAAGTGCAGGCT
1 TACTAAGTGCAGGCTACTACATGTACCAAATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
* **
35766845 ACTATGCGTACCCGTTAACTTCGATCACGTGTGCAA
66 ACTATGCGTACCAGAGAACTTCGATCACGTGTGCAA
* *
35766881 TACTAAGTGCAGGCTACTACATGTACTAGATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
1 TACTAAGTGCAGGCTACTACATGTACCAAATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
* *
35766946 ACTATGCGTACCAGAGAGCTTCGGTCAC
66 ACTATGCGTACCAGAGAACTTCGATCAC
35766974 AAGGGTGGCA
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 84 1.00
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (101 bp):
TACTAAGTGCAGGCTACTACATGTACCAAATTGATAGGTCGCATGTGTAGTACTAAGTGCAGGCT
ACTATGCGTACCAGAGAACTTCGATCACGTGTGCAA
Found at i:35767162 original size:16 final size:16
Alignment explanation
Indices: 35767141--35767172 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
35767131 AGAATGGAGT
35767141 AAGTGAAATTATGTAA
1 AAGTGAAATTATGTAA
*
35767157 AAGTGAAATTTTGTAA
1 AAGTGAAATTATGTAA
35767173 TAAAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (16 bp):
AAGTGAAATTATGTAA
Found at i:35775374 original size:44 final size:45
Alignment explanation
Indices: 35775314--35775568 Score: 279
Period size: 44 Copynumber: 5.6 Consensus size: 45
35775304 TATCCGTGCT
*
35775314 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACATCTCTTAGGCC
* *
35775358 GATGCATGTTCTAGACATGTCTTACACTAGCACATCTCTTA-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACATCTCTTAGGCC
* * *
35775402 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTC-GAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCTTAGGCC
* *
35775448 GATGCATGTCCCAGACATGTCTTACACTAGCTC-TCGTCTTAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACATC-TCTT-AGGCC
* * * * *
35775494 AATGCATGTCCTAAACATGTCTTACACTAG--CATTTCATAATGTGACC
1 GATGCATGTCCCAGACATGTCTTACACTAGCACATCTC-TTA-G-G-CC
35775541 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
35775569 GGCTCACATA
Statistics
Matches: 178, Mismatches: 22, Indels: 19
0.81 0.10 0.09
Matches are distributed among these distances:
43 2 0.01
44 76 0.43
45 3 0.02
46 70 0.39
47 27 0.15
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACATCTCTTAGGCC
Found at i:35775455 original size:46 final size:45
Alignment explanation
Indices: 35775314--35775577 Score: 252
Period size: 46 Copynumber: 5.8 Consensus size: 45
35775304 TATCCGTGCT
* *
35775314 GATGCATGTCCCAGACATGTCTTACACTAGC--ACAACTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTC-GAGCC
* * *
35775358 GATGCATGTTCTAGACATGTCTTACACTAGC--ACATCTCTTAGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTC-GAGCC
* *
35775402 GATGCATGTCCCAGACATGTCTTACACTGGCTTACATCTCGAGGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA-GCC
* **
35775448 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CGTCTTAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGA-GCC
* * * * * *
35775494 AATGCATGTCCTAAACATGTCTTACACTAGCATTTCATAAT-GTGACC
1 GATGCATGTCCCAGACATGTCTTACACTAGC-TTACAT-CTCGAG-CC
* *
35775541 GATGCATGTCCCAGACATGTCTTACACTGGCTCACAT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTTACAT
35775578 AATAGCAATG
Statistics
Matches: 185, Mismatches: 27, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
44 69 0.37
45 1 0.01
46 81 0.44
47 33 0.18
48 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGAGCC
Found at i:35781474 original size:44 final size:42
Alignment explanation
Indices: 35781418--35781564 Score: 138
Period size: 42 Copynumber: 3.4 Consensus size: 42
35781408 AATTATCGTA
* *
35781418 TAAGACCGTGTCTGGGACACTGGCATCGATTTGAAATTTACATG
1 TAAGACCATGTCTGGGACA-TGGCATCGATCTG-AATTTACATG
* * *
35781462 TAAGACCATGTCTGGGACATCGGCATCGTATCTG--TTTTCGTA
1 TAAGACCATGTCTGGGACAT-GGCATCG-ATCTGAATTTACATG
* *
35781504 TAAGACCCTGTCTGGGACAGAGGCATCGATACTGAA-TTACATG
1 TAAGACCATGTCTGGGACA-TGGCATCGAT-CTGAATTTACATG
* *
35781547 TAAGACCACGTCTAGGAC
1 TAAGACCATGTCTGGGAC
35781565 GTCGGCATTG
Statistics
Matches: 84, Mismatches: 13, Indels: 13
0.76 0.12 0.12
Matches are distributed among these distances:
41 2 0.02
42 33 0.39
43 20 0.24
44 25 0.30
45 4 0.05
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.27
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATGGCATCGATCTGAATTTACATG
Found at i:35782039 original size:12 final size:13
Alignment explanation
Indices: 35782022--35782053 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
35782012 GCAAATGGTA
35782022 AGTTTTG-TGCAT
1 AGTTTTGATGCAT
35782034 AGTTTTGATGCAT
1 AGTTTTGATGCAT
35782047 -GTTTTGA
1 AGTTTTGA
35782054 AATGTGCTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.19, C:0.06, G:0.25, T:0.50
Consensus pattern (13 bp):
AGTTTTGATGCAT
Found at i:35784052 original size:27 final size:27
Alignment explanation
Indices: 35783982--35784044 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
35783972 CCTTATATGA
* *
35783982 TAAAATGACCGAAATACCCCCATTGGG
1 TAAAATGACCGAAATACCCCCATAGGC
* *
35784009 TAGAATGACCGAAATACCCCTATAGGC
1 TAAAATGACCGAAATACCCCCATAGGC
35784036 TAAAATGAC
1 TAAAATGAC
35784045 TGTAATACGC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCCATAGGC
Found at i:35784149 original size:23 final size:23
Alignment explanation
Indices: 35784106--35784152 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 23
35784096 CTATATTTGA
35784106 GCATGCCATGTTATATGTATGTT
1 GCATGCCATGTTATATGTATGTT
35784129 GCAT-CCATGTATAATAT-TATGTT
1 GCATGCCATGT-T-ATATGTATGTT
35784152 G
1 G
35784153 TATTGCATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 12 0.55
24 4 0.18
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.43
Consensus pattern (23 bp):
GCATGCCATGTTATATGTATGTT
Found at i:35784437 original size:18 final size:18
Alignment explanation
Indices: 35784414--35784471 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
35784404 TTTGCTTGCA
*
35784414 TACTGCACTGATTACTAT
1 TACTGCACTGATTACTGT
* *
35784432 TACTGCATTGATCA-TGGT
1 TACTGCACTGATTACT-GT
35784450 TACTGCACTGATTACTGT
1 TACTGCACTGATTACTGT
35784468 TACT
1 TACT
35784472 CAAATGGGCT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
17 1 0.03
18 31 0.94
19 1 0.03
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.40
Consensus pattern (18 bp):
TACTGCACTGATTACTGT
Found at i:35785659 original size:29 final size:29
Alignment explanation
Indices: 35785625--35785681 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
35785615 TTCAGCCATG
*
35785625 TGTGACACACAGTCAAGTACATGGCTGTC
1 TGTGACACACAGTCAAGTACACGGCTGTC
*
35785654 TGTGACACATAGTCAAGTACACGGCTGT
1 TGTGACACACAGTCAAGTACACGGCTGT
35785682 GTGTCCCCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (29 bp):
TGTGACACACAGTCAAGTACACGGCTGTC
Found at i:35786350 original size:24 final size:25
Alignment explanation
Indices: 35786313--35786412 Score: 69
Period size: 24 Copynumber: 4.1 Consensus size: 25
35786303 GTTACACCCG
* *
35786313 TTAAGCTCGCATGAGTTTTCTGAT-
1 TTAAGCTCGCATGAGCTTCCTGATA
** *
35786337 TTAAGCTCTTATGAGCTTCCTGTTA
1 TTAAGCTCGCATGAGCTTCCTGATA
* * * *
35786362 TTAAGCTCGAATAAGCTTCCCGTTA
1 TTAAGCTCGCATGAGCTTCCTGATA
* * * *
35786387 -CAAGCTCACATGAGCTTTCTGTTA
1 TTAAGCTCGCATGAGCTTCCTGATA
35786411 TT
1 TT
35786413 TGGCTTGGAA
Statistics
Matches: 58, Mismatches: 16, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
24 37 0.64
25 21 0.36
ACGTcount: A:0.23, C:0.21, G:0.17, T:0.39
Consensus pattern (25 bp):
TTAAGCTCGCATGAGCTTCCTGATA
Found at i:35786368 original size:25 final size:25
Alignment explanation
Indices: 35786337--35786412 Score: 73
Period size: 25 Copynumber: 3.1 Consensus size: 25
35786327 GTTTTCTGAT
**
35786337 TTAAGCTCTTATGAGCTTCCTGTTA
1 TTAAGCTCAAATGAGCTTCCTGTTA
* * *
35786362 TTAAGCTCGAATAAGCTTCCCGTTA
1 TTAAGCTCAAATGAGCTTCCTGTTA
* * *
35786387 -CAAGCTCACATGAGCTTTCTGTTA
1 TTAAGCTCAAATGAGCTTCCTGTTA
35786411 TT
1 TT
35786413 TGGCTTGGAA
Statistics
Matches: 39, Mismatches: 11, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
24 18 0.46
25 21 0.54
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (25 bp):
TTAAGCTCAAATGAGCTTCCTGTTA
Found at i:35789482 original size:32 final size:32
Alignment explanation
Indices: 35789437--35789498 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
35789427 ATACTCAATT
*
35789437 GAATTTTCGTACATACCTGTACCATCTTGTAC
1 GAATTTTCATACATACCTGTACCATCTTGTAC
35789469 GAATTTTCATACATACCTGTACCATCTTGT
1 GAATTTTCATACATACCTGTACCATCTTGT
35789499 GCCAATCTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.26, C:0.24, G:0.11, T:0.39
Consensus pattern (32 bp):
GAATTTTCATACATACCTGTACCATCTTGTAC
Found at i:35789681 original size:28 final size:28
Alignment explanation
Indices: 35789551--35789821 Score: 188
Period size: 28 Copynumber: 9.7 Consensus size: 28
35789541 ATTCAATGTC
* * * * *
35789551 TCGCACACTAGGTGCCATACCCGATACC
1 TCGCACACTAAGTGCCATTCTCAATACT
* * **
35789579 TCGTACACTAAGTGCCATT-TTAGATGTT
1 TCGCACACTAAGTGCCATTCTCA-ATACT
* * * *
35789607 TCGTACACTAAGTGTCATCCTCGATACT
1 TCGCACACTAAGTGCCATTCTCAATACT
* * * *
35789635 TCACACATTAAATGTCATTCTCAATACT
1 TCGCACACTAAGTGCCATTCTCAATACT
* * * * * *
35789663 TTGCACACTAAATACCATTTTGAAT-GT
1 TCGCACACTAAGTGCCATTCTCAATACT
* * *
35789690 ATCGCACACCAAGTGCCATCCTCGATACT
1 -TCGCACACTAAGTGCCATTCTCAATACT
* *
35789719 TCGCACACTAAGTTCCATTCCCAATACT
1 TCGCACACTAAGTGCCATTCTCAATACT
* * *
35789747 TCGCATACTAAGTGCCATTCTGAAT-GT
1 TCGCACACTAAGTGCCATTCTCAATACT
* * *
35789774 ATCGCAGACTAAGTGCCATCCTCGATACT
1 -TCGCACACTAAGTGCCATTCTCAATACT
35789803 TCGCACACTAAGTGCCATT
1 TCGCACACTAAGTGCCATT
35789822 TATATGGTCG
Statistics
Matches: 182, Mismatches: 55, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
27 2 0.01
28 177 0.97
29 3 0.02
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATTCTCAATACT
Found at i:35789738 original size:84 final size:84
Alignment explanation
Indices: 35789551--35789821 Score: 321
Period size: 84 Copynumber: 3.2 Consensus size: 84
35789541 ATTCAATGTC
* * * * * * * *
35789551 TCGCACACTAGGTGCCATACCCGATACCTCGTACACTAAGTGCCATTTT-AGATGTTTCGTACAC
1 TCGCACACTAAGTTCCATTCCCAATACTTCGCACACTAAGTGCCATTTTGA-ATGTATCGCACAC
*
35789615 TAAGTGTCATCCTCGATACT
65 TAAGTGCCATCCTCGATACT
* * * * * * *
35789635 TCACACATTAAATGT-CATTCTCAATACTTTGCACACTAAATACCATTTTGAATGTATCGCACAC
1 TCGCACACTAAGT-TCCATTCCCAATACTTCGCACACTAAGTGCCATTTTGAATGTATCGCACAC
*
35789699 CAAGTGCCATCCTCGATACT
65 TAAGTGCCATCCTCGATACT
* * *
35789719 TCGCACACTAAGTTCCATTCCCAATACTTCGCATACTAAGTGCCATTCTGAATGTATCGCAGACT
1 TCGCACACTAAGTTCCATTCCCAATACTTCGCACACTAAGTGCCATTTTGAATGTATCGCACACT
35789784 AAGTGCCATCCTCGATACT
66 AAGTGCCATCCTCGATACT
*
35789803 TCGCACACTAAGTGCCATT
1 TCGCACACTAAGTTCCATT
35789822 TATATGGTCG
Statistics
Matches: 155, Mismatches: 29, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
83 1 0.01
84 153 0.99
85 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.14, T:0.30
Consensus pattern (84 bp):
TCGCACACTAAGTTCCATTCCCAATACTTCGCACACTAAGTGCCATTTTGAATGTATCGCACACT
AAGTGCCATCCTCGATACT
Found at i:35799150 original size:25 final size:25
Alignment explanation
Indices: 35799122--35799175 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
35799112 ATAATTTTCG
35799122 ATATAATAAT-AAAAT-ATAAATATAA
1 ATATAAT-ATGAAAATAATAAATA-AA
*
35799147 ATATAATATGAAAATAATAATTAAA
1 ATATAATATGAAAATAATAAATAAA
35799172 ATAT
1 ATAT
35799176 TTGATATAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
24 2 0.08
25 18 0.69
26 6 0.23
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (25 bp):
ATATAATATGAAAATAATAAATAAA
Found at i:35799374 original size:21 final size:21
Alignment explanation
Indices: 35799340--35799389 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
35799330 GGTATAAAAA
*
35799340 AATATAAATTAAAATCATTATAT
1 AATA-AAATGAAAAT-ATTATAT
*
35799363 AA-AAAATGAAAATGTTATAT
1 AATAAAATGAAAATATTATAT
35799383 AATAAAA
1 AATAAAA
35799390 ATTAGTTCTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 8 0.33
21 13 0.54
22 1 0.04
23 2 0.08
ACGTcount: A:0.62, C:0.02, G:0.04, T:0.32
Consensus pattern (21 bp):
AATAAAATGAAAATATTATAT
Found at i:35805507 original size:13 final size:13
Alignment explanation
Indices: 35805489--35805515 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
35805479 TTGTATAGAG
35805489 TGATATCAATATT
1 TGATATCAATATT
35805502 TGATATCAATATT
1 TGATATCAATATT
35805515 T
1 T
35805516 ATAAAAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.48
Consensus pattern (13 bp):
TGATATCAATATT
Found at i:35819668 original size:46 final size:46
Alignment explanation
Indices: 35819525--35819696 Score: 193
Period size: 46 Copynumber: 3.7 Consensus size: 46
35819515 ATATTTGTGT
* ** *
35819525 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTTAATATGAGA
* * * *
35819571 GCCAATGTAAGACCATGTCTGGGACATGTCATCGGCATTAATACGAGA
1 GCTAGTGTAAGA-CATGTCTGGGACATGT-ATCGGCCTTAATATGAGA
* * *
35819619 GCTAGTGTAAGACGTGTCTGGGATATGTATCGGCCTTAAGATGTA-A
1 GCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTTAATATG-AGA
* *
35819665 GCTAGTGTAAGACATGTCTAGGACATGCATCG
1 GCTAGTGTAAGACATGTCTGGGACATGTATCG
35819697 ACTATATGAT
Statistics
Matches: 104, Mismatches: 19, Indels: 6
0.81 0.15 0.05
Matches are distributed among these distances:
46 51 0.49
47 30 0.29
48 23 0.22
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGTATCGGCCTTAATATGAGA
Found at i:35819819 original size:47 final size:47
Alignment explanation
Indices: 35819751--35819840 Score: 162
Period size: 47 Copynumber: 1.9 Consensus size: 47
35819741 TGGAACAGAT
* *
35819751 ACGTGAGAGTCAGTGTAAGACCATGTCTGGGACATGGCATCGATTTA
1 ACGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGATTTA
35819798 ACGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGA
1 ACGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGA
35819841 CATTGTACCT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (47 bp):
ACGTGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGATTTA
Found at i:35823390 original size:28 final size:29
Alignment explanation
Indices: 35823339--35823393 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
35823329 TACAGGGGTT
*
35823339 TTCACACGGCCAAGTACACGCCCGTGTCC
1 TTCACACAGCCAAGTACACGCCCGTGTCC
* *
35823368 TTCACACAGCCTAG-ACACTCCCGTGT
1 TTCACACAGCCAAGTACACGCCCGTGT
35823394 GGTCGCCTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.22, C:0.40, G:0.18, T:0.20
Consensus pattern (29 bp):
TTCACACAGCCAAGTACACGCCCGTGTCC
Found at i:35828879 original size:36 final size:36
Alignment explanation
Indices: 35828839--35828910 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
35828829 GATTTGTGGA
*
35828839 TTTTGGTACTTTTAATCCGGTTATTTCATGTTTTGT
1 TTTTGGTACTCTTAATCCGGTTATTTCATGTTTTGT
*
35828875 TTTTGGTTCTCTTAATCCGGTTATTTCATGTTTTGT
1 TTTTGGTACTCTTAATCCGGTTATTTCATGTTTTGT
35828911 ACTCAGGAGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.12, C:0.12, G:0.17, T:0.58
Consensus pattern (36 bp):
TTTTGGTACTCTTAATCCGGTTATTTCATGTTTTGT
Found at i:35833835 original size:6 final size:6
Alignment explanation
Indices: 35833819--35833855 Score: 56
Period size: 6 Copynumber: 6.0 Consensus size: 6
35833809 TTGAATCCTC
*
35833819 TTATCTT TTATTT TTATTT TTATTT TTATTT TCATTT
1 TTAT-TT TTATTT TTATTT TTATTT TTATTT TTATTT
35833856 CAGTTTTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
6 25 0.86
7 4 0.14
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:35844748 original size:28 final size:29
Alignment explanation
Indices: 35844717--35844773 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
35844707 TAAAGTGATT
*
35844717 TTTGACAAAAATGTCAATT-AGGGATTAA
1 TTTGACAAAAATGTAAATTGAGGGATTAA
* * *
35844745 TTTGAGAAAAGTGTAAATTGAGGGGTTAA
1 TTTGACAAAAATGTAAATTGAGGGATTAA
35844774 ATTGTGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 16 0.67
29 8 0.33
ACGTcount: A:0.40, C:0.04, G:0.25, T:0.32
Consensus pattern (29 bp):
TTTGACAAAAATGTAAATTGAGGGATTAA
Found at i:35844782 original size:29 final size:28
Alignment explanation
Indices: 35844718--35844782 Score: 67
Period size: 28 Copynumber: 2.3 Consensus size: 28
35844708 AAAGTGATTT
* * *
35844718 TTGACAAAAATGTCAATTAGGGATTAAT
1 TTGAGAAAAATGTAAATTAGGGATTAAA
* *
35844746 TTGAGAAAAGTGTAAATTGAGGGGTTAAA
1 TTGAGAAAAATGTAAATT-AGGGATTAAA
*
35844775 TTGTGAAA
1 TTGAGAAA
35844783 TAAATGAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 15 0.50
29 15 0.50
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (28 bp):
TTGAGAAAAATGTAAATTAGGGATTAAA
Found at i:35852207 original size:12 final size:12
Alignment explanation
Indices: 35852190--35852217 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
35852180 TACAATCGAT
35852190 TGTGGTAGGTCG
1 TGTGGTAGGTCG
35852202 TGTGGTAGGTCG
1 TGTGGTAGGTCG
35852214 TGTG
1 TGTG
35852218 CCATAACACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.07, G:0.50, T:0.36
Consensus pattern (12 bp):
TGTGGTAGGTCG
Found at i:35862898 original size:44 final size:44
Alignment explanation
Indices: 35862716--35862873 Score: 119
Period size: 43 Copynumber: 3.7 Consensus size: 44
35862706 AGCTCGTACA
* * * * * *
35862716 ATGCCAACGTCCTAGACGTGGTCTTACATGT-AATCA-AATATTG
1 ATGCCAATGTCCCAGACATGATCTTACACGTAAATCACAA-ATCG
* * * * * * *
35862759 ATGCCACTATCCCAGACAGGGTCTTACAC-AAAATCATATAT-G
1 ATGCCAATGTCCCAGACATGATCTTACACGTAAATCACAAATCG
**
35862801 ATATCAA-GTCCCAGACATGATCTTACACGTAAATCACAAATCG
1 ATGCCAATGTCCCAGACATGATCTTACACGTAAATCACAAATCG
* *
35862844 ATGCCAATGTCCCAGACGTGGTCTTACACG
1 ATGCCAATGTCCCAGACATGATCTTACACG
35862874 ATAACACATA
Statistics
Matches: 88, Mismatches: 22, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
41 18 0.20
42 14 0.16
43 35 0.40
44 21 0.24
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.25
Consensus pattern (44 bp):
ATGCCAATGTCCCAGACATGATCTTACACGTAAATCACAAATCG
Found at i:35864848 original size:9 final size:10
Alignment explanation
Indices: 35864836--35864891 Score: 64
Period size: 9 Copynumber: 5.8 Consensus size: 10
35864826 TTTGATATAC
35864836 ATGAT-TGAT
1 ATGATATGAT
*
35864845 ATGATATGCAC
1 ATGATATG-AT
35864856 ATGATATG-T
1 ATGATATGAT
*
35864865 ATGATATGAC
1 ATGATATGAT
35864875 ATGATATG-T
1 ATGATATGAT
35864884 ATGATATG
1 ATGATATG
35864892 CACATGATGT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 21 0.52
10 10 0.25
11 9 0.22
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (10 bp):
ATGATATGAT
Found at i:35864851 original size:5 final size:5
Alignment explanation
Indices: 35864836--35864891 Score: 64
Period size: 5 Copynumber: 11.6 Consensus size: 5
35864826 TTTGATATAC
* *
35864836 ATGAT -TGAT ATGAT ATGCAC ATGAT ATG-T ATGAT ATGAC ATGAT ATG-T
1 ATGAT ATGAT ATGAT ATG-AT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
35864884 ATGAT ATG
1 ATGAT ATG
35864892 CACATGATGT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
4 12 0.28
5 27 0.63
6 4 0.09
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (5 bp):
ATGAT
Found at i:35864859 original size:20 final size:20
Alignment explanation
Indices: 35864834--35864899 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
35864824 GATTTGATAT
35864834 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
35864854 ACATGATATGTATGATATG-
1 ACATGATATGTATGATATGC
35864873 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
35864893 ACATGAT
1 ACATGAT
35864900 GTATTCATAA
Statistics
Matches: 44, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
19 19 0.43
20 23 0.52
21 2 0.05
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:35865039 original size:24 final size:24
Alignment explanation
Indices: 35864947--35865055 Score: 130
Period size: 25 Copynumber: 4.4 Consensus size: 24
35864937 AGGAAGTGCA
* *
35864947 AAAAGGGCTATGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
*
35864971 GAAAAAGGGCTTTTGCCCCAGTTTATT
1 --AAAAGGGC-TTTGCCCCAGTTTATC
35864998 AAAAGGGCTTTTGCCCCAGTTTATC
1 AAAAGGGC-TTTGCCCCAGTTTATC
*
35865023 AAAAGGGCTTTGCCCCAG-TTATT
1 AAAAGGGCTTTGCCCCAGTTTATC
35865046 AAAAGAGGCT
1 AAAAG-GGCT
35865056 AGGCCTCCAA
Statistics
Matches: 76, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
23 9 0.12
24 14 0.18
25 32 0.42
26 8 0.11
27 13 0.17
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:35865302 original size:31 final size:31
Alignment explanation
Indices: 35865264--35865355 Score: 105
Period size: 38 Copynumber: 2.8 Consensus size: 31
35865254 CGTTTACAGT
35865264 AAAGGCTTCGGCCCAGTAATATGCAATATGA
1 AAAGGCTTCGGCCCAGTAATATGCAATATGA
*
35865295 AAAGGCTTCGGCCCAATGTTATGAAATATGAAATATGA
1 AAAGGCTTCGGCCC-A-G---T--AATATGCAATATGA
35865333 AAAGGCTTCGGCCCAGT-ATATGC
1 AAAGGCTTCGGCCCAGTAATATGC
35865356 TGAGATGAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
30 5 0.10
31 14 0.27
32 1 0.02
33 2 0.04
36 2 0.04
37 1 0.02
38 27 0.52
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGCAATATGA
Found at i:35872941 original size:25 final size:25
Alignment explanation
Indices: 35872913--35873009 Score: 92
Period size: 25 Copynumber: 3.9 Consensus size: 25
35872903 GGAGGAAGTG
*
35872913 CAAAAAGGGC-TATGCCCCAGTTTA
1 CAAAAAGGGCTTTTGCCCCAGTTTA
* * *
35872937 CCAAAAAGAGCTTTTGCCTCTGTTTA
1 -CAAAAAGGGCTTTTGCCCCAGTTTA
**
35872963 TTAAAAGGGCTTTTGCCCCAGTTTA
1 CAAAAAGGGCTTTTGCCCCAGTTTA
*
35872988 TC-AAAAGGGC-TTTGCCCTAGTT
1 -CAAAAAGGGCTTTTGCCCCAGTT
35873010 ATTAAAAGAG
Statistics
Matches: 59, Mismatches: 11, Indels: 5
0.79 0.15 0.07
Matches are distributed among these distances:
24 11 0.19
25 37 0.63
26 11 0.19
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (25 bp):
CAAAAAGGGCTTTTGCCCCAGTTTA
Found at i:35873000 original size:50 final size:49
Alignment explanation
Indices: 35872915--35873022 Score: 132
Period size: 50 Copynumber: 2.2 Consensus size: 49
35872905 AGGAAGTGCA
35872915 AAAAGGGC-TATGCCCCAGTTTACCAAAAAGAGCTTTTGCCTCT-GTTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGAGC-TTTGCC-CTAG-TTATT
* * *
35872965 AAAAGGGCTTTTGCCCCAGTTTATC-AAAAGGGCTTTGCCCTAGTTATT
1 AAAAGGGCTTATGCCCCAGTTTACCAAAAAGAGCTTTGCCCTAGTTATT
35873013 AAAAGAGGCT
1 AAAAG-GGCT
35873023 AGGCCTCTAG
Statistics
Matches: 52, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
48 12 0.23
49 11 0.21
50 15 0.29
51 14 0.27
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (49 bp):
AAAAGGGCTTATGCCCCAGTTTACCAAAAAGAGCTTTGCCCTAGTTATT
Found at i:35873022 original size:24 final size:23
Alignment explanation
Indices: 35872960--35873036 Score: 82
Period size: 25 Copynumber: 3.2 Consensus size: 23
35872950 TTGCCTCTGT
*
35872960 TTATTAAAAGGGCTTTTGCCCCAG
1 TTATTAAAAGGGC-TTTGCCCTAG
*
35872984 TTTATCAAAAGGGCTTTGCCCTAG
1 -TTATTAAAAGGGCTTTGCCCTAG
**
35873008 TTATTAAAAGAGGCTAGGCCTCTAG
1 TTATTAAAAG-GGCTTTGCC-CTAG
35873033 TTAT
1 TTAT
35873037 ATGATAAAGC
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
23 9 0.20
24 16 0.36
25 20 0.44
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (23 bp):
TTATTAAAAGGGCTTTGCCCTAG
Found at i:35875175 original size:43 final size:44
Alignment explanation
Indices: 35875122--35875214 Score: 118
Period size: 44 Copynumber: 2.1 Consensus size: 44
35875112 CATAGGATTC
* * *
35875122 CGATATGTGATTT-TGTGTAAGACCAC-GTCTAGGACATTGGCAT
1 CGATATGTGATTTACGTGTAAGACC-CTATCTAGGACAGTGGCAT
* *
35875165 CGATTTGTGATTTACGTGTAAGACCCTATCTGGGACAGTGGCAT
1 CGATATGTGATTTACGTGTAAGACCCTATCTAGGACAGTGGCAT
35875209 CGATAT
1 CGATAT
35875215 ATGGTTGCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
43 13 0.31
44 29 0.69
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (44 bp):
CGATATGTGATTTACGTGTAAGACCCTATCTAGGACAGTGGCAT
Found at i:35875184 original size:44 final size:43
Alignment explanation
Indices: 35875122--35875232 Score: 116
Period size: 44 Copynumber: 2.6 Consensus size: 43
35875112 CATAGGATTC
* * *
35875122 CGATATGTGATTTTGTGTAAGACCAC-GTCTAGGACATTGGCAT
1 CGATATGTGATTTCGTGTAAGACC-CTATCTAGGACAGTGGCAT
* *
35875165 CGATTTGTGATTTACGTGTAAGACCCTATCTGGGACAGTGGCAT
1 CGATATGTGATTT-CGTGTAAGACCCTATCTAGGACAGTGGCAT
* * * *
35875209 CGATATATGGTTGCATGTAAGACC
1 CGATATGTGATTTCGTGTAAGACC
35875233 ATGTCTGGGA
Statistics
Matches: 56, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
43 23 0.41
44 33 0.59
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (43 bp):
CGATATGTGATTTCGTGTAAGACCCTATCTAGGACAGTGGCAT
Found at i:35875241 original size:43 final size:44
Alignment explanation
Indices: 35875137--35875244 Score: 119
Period size: 44 Copynumber: 2.5 Consensus size: 44
35875127 TGTGATTTTG
* * * * * * *
35875137 TGTAAGACCACGTCTAGGACATTGGCATCGATTTGTGATTTACG
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATATGAGTTACA
* * *
35875181 TGTAAGACCCTATCTGGGACAGTGGCATCGATATATG-GTTGCA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATATGAGTTACA
35875224 TGTAAGACCATGTCTGGGACA
1 TGTAAGACCATGTCTGGGACA
35875245 TTTGGCGTTG
Statistics
Matches: 52, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
43 22 0.42
44 30 0.58
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATATGAGTTACA
Found at i:35883003 original size:46 final size:46
Alignment explanation
Indices: 35882936--35883206 Score: 215
Period size: 46 Copynumber: 5.8 Consensus size: 46
35882926 TGTAACCCGC
*
35882936 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCAT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTC-GGATGTTCGCAT
* * *
35882982 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * * * * **
35883028 ACATCTCTTGTACTCGGACTCAAGTCAACGAGTTCGGACATTCGCAT
1 CCAT-AAGTGAACTCGAACTCAACTCAACGAGCTCGGATGTTCGCAT
* * *
35883075 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGCCTAG-TT
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATG-TTCGCAT
* *** * * * * **
35883121 ACATCTCTTGTACTCGGACTCAAGTCAACGAGTTCGGACATTCGCAT
1 CCAT-AAGTGAACTCGAACTCAACTCAACGAGCTCGGATGTTCGCAT
* *
35883168 CCATAAGTGAACTCGAACTCAACTCAATGAGTTCGGATG
1 CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATG
35883207 CCCAAATATC
Statistics
Matches: 165, Mismatches: 53, Indels: 14
0.71 0.23 0.06
Matches are distributed among these distances:
45 2 0.01
46 99 0.60
47 64 0.39
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (46 bp):
CCATAAGTGAACTCGAACTCAACTCAACGAGCTCGGATGTTCGCAT
Found at i:35883058 original size:47 final size:47
Alignment explanation
Indices: 35882992--35883158 Score: 175
Period size: 47 Copynumber: 3.6 Consensus size: 47
35882982 CCATAAGTGA
35882992 ACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTTGT
1 ACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTTGT
* * * * *
35883039 ACTCGGACTCAAGTCAACGAGTTCGGA---C-A-TTCGCATC-CATAAGTGA
1 ACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTT-ACATCTC-T---TGT
35883085 ACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTTGT
1 ACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTTGT
* * *
35883132 ACTCGGACTCAAGTCAACGAGTTCGGA
1 ACTCGAACTCAACTCAACGAGCTCGGA
35883159 CATTCGCATC
Statistics
Matches: 96, Mismatches: 13, Indels: 22
0.73 0.10 0.17
Matches are distributed among these distances:
42 3 0.03
43 6 0.06
44 1 0.01
46 26 0.27
47 50 0.52
49 1 0.01
50 6 0.06
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (47 bp):
ACTCGAACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTTGT
Found at i:35883072 original size:93 final size:93
Alignment explanation
Indices: 35882946--35883208 Score: 456
Period size: 93 Copynumber: 2.8 Consensus size: 93
35882936 CCATAAGTGA
* * **
35882946 ACTCGGACTCAACTCAACGAGCTCAGG-TGTTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
1 ACTCGGACTCAAGTCAACGAGTTC-GGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
35883010 GAGCTCGGATGCCTAGTTACATCTCTTGT
65 GAGCTCGGATGCCTAGTTACATCTCTTGT
35883039 ACTCGGACTCAAGTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAACG
1 ACTCGGACTCAAGTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAACG
35883104 AGCTCGGATGCCTAGTTACATCTCTTGT
66 AGCTCGGATGCCTAGTTACATCTCTTGT
*
35883132 ACTCGGACTCAAGTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAATG
1 ACTCGGACTCAAGTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAACG
*
35883197 AGTTCGGATGCC
66 AGCTCGGATGCC
35883209 CAAATATCCT
Statistics
Matches: 163, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
92 2 0.01
93 161 0.99
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (93 bp):
ACTCGGACTCAAGTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAACG
AGCTCGGATGCCTAGTTACATCTCTTGT
Found at i:35889429 original size:14 final size:13
Alignment explanation
Indices: 35889406--35889437 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
35889396 AGAATATCAA
35889406 AACAATAATTAAG
1 AACAATAATTAAG
35889419 AACACATAATTAAG
1 AACA-ATAATTAAG
35889433 AACAA
1 AACAA
35889438 GTCAAATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.62, C:0.12, G:0.06, T:0.19
Consensus pattern (13 bp):
AACAATAATTAAG
Found at i:35892989 original size:27 final size:26
Alignment explanation
Indices: 35892945--35892996 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
35892935 CTCACTGCAA
*
35892945 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
35892972 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
35892997 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:35893050 original size:31 final size:32
Alignment explanation
Indices: 35893012--35893072 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 32
35893002 CTCGCTGCAA
* *
35893012 TCTGGTGGCTTTGCCAC-ATATATATATCTAT
1 TCTGGTGGCCTAGCCACAATATATATATCTAT
*
35893043 TCTGGTGGCCTAGCCACAATATCTATATCT
1 TCTGGTGGCCTAGCCACAATATATATATCT
35893073 GGTGACTTCT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
31 15 0.58
32 11 0.42
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTAT
Found at i:35897464 original size:46 final size:48
Alignment explanation
Indices: 35897315--35897585 Score: 276
Period size: 47 Copynumber: 5.8 Consensus size: 48
35897305 ATTTGTTTGT
* * * *
35897315 GAGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCAC-ATTATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GATGA
* * * * *
35897361 GAGCCAATGTAAGATCATGTCTGGGACATGGCATCGACATTGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
* *
35897409 GAGCTAGTGTAAGA-CATGTCTGGGATAT-GCATCGGCCTCGAGATGTA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATG-A
* *
35897456 -AGCCAGTGTGAGA-CATGTCTAGGACAT-GCATCGG-CTACGAGATGA
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGATGA
* * * *
35897501 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGAT-A
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
35897547 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 -GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
35897586 ACCTTACCCA
Statistics
Matches: 191, Mismatches: 23, Indels: 20
0.82 0.10 0.09
Matches are distributed among these distances:
45 3 0.02
46 75 0.39
47 80 0.42
48 32 0.17
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGATGA
Found at i:35897572 original size:140 final size:141
Alignment explanation
Indices: 35897320--35897585 Score: 378
Period size: 140 Copynumber: 1.9 Consensus size: 141
35897310 TTTGTGAGCT
* * *
35897320 AGTGTAAGACATGTCTGGGACATGCATCGACCACATTATGAGAGCCAATGTAAGATCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATCGACCACATGATGAGAGCCAATGTAAGACCATGTCTGG
* *
35897385 GACATGGCATCGACATTGAGATGAGAGCTAGTGTAAGACATGTCTGGGATAT-GCATCGGCCTCG
66 GACATGGCATCGACATTGAGATGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
35897449 AGATGTAAGCC
131 AGATGTAAGCC
* * * * * *
35897460 AGTGTGAGACATGTCTAGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTAGGACATGCATCGACCAC-ATGATGAGAGCCAATGTAAGACCATGTCTG
35897524 GGACATGGCATCGAC-TTGAGAT-ATGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
65 GGACATGGCATCGACATTGAGATGA-GAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGGC
35897586 ACCTTACCCA
Statistics
Matches: 111, Mismatches: 11, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
138 1 0.01
139 20 0.18
140 81 0.73
141 9 0.08
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (141 bp):
AGTGTAAGACATGTCTAGGACATGCATCGACCACATGATGAGAGCCAATGTAAGACCATGTCTGG
GACATGGCATCGACATTGAGATGAGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGGCCTCG
AGATGTAAGCC
Found at i:35901697 original size:13 final size:13
Alignment explanation
Indices: 35901679--35901704 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35901669 GCTCGGCAAG
35901679 GACACGCCCGTGT
1 GACACGCCCGTGT
35901692 GACACGCCCGTGT
1 GACACGCCCGTGT
35901705 TCGATTTCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.31, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:35902702 original size:15 final size:15
Alignment explanation
Indices: 35902682--35902716 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
35902672 AAAAATTTAG
35902682 TGTTCATAATATTTC
1 TGTTCATAATATTTC
35902697 TGTTCATAATATTTC
1 TGTTCATAATATTTC
*
35902712 AGTTC
1 TGTTC
35902717 CCCGGAAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.14, G:0.09, T:0.51
Consensus pattern (15 bp):
TGTTCATAATATTTC
Found at i:35905265 original size:8 final size:8
Alignment explanation
Indices: 35905252--35905307 Score: 103
Period size: 8 Copynumber: 6.9 Consensus size: 8
35905242 ATTTACATAG
35905252 AATCAAAA
1 AATCAAAA
35905260 AATCAAAA
1 AATCAAAA
35905268 AATCAAAA
1 AATCAAAA
35905276 AATCAAAA
1 AATCAAAA
35905284 AATCAAAA
1 AATCAAAA
35905292 AATCAAAA
1 AATCAAAA
35905300 AATACAAA
1 AAT-CAAA
35905308 TAAAATCATT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
8 43 0.91
9 4 0.09
ACGTcount: A:0.75, C:0.12, G:0.00, T:0.12
Consensus pattern (8 bp):
AATCAAAA
Found at i:35910741 original size:46 final size:46
Alignment explanation
Indices: 35910685--35910950 Score: 206
Period size: 46 Copynumber: 5.7 Consensus size: 46
35910675 TTGGGCATCC
35910685 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* *
35910731 GAACTTGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTAGGCATCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T--G--TCT
* * *
35910778 GAGCTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
*** * * *
35910824 GAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--TCC
1 GAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATGTCT
* * * * *
35910871 GAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * * *
35910917 GAGCTCATTGAGTTGAGTCTGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
35910951 GCGGGTTACA
Statistics
Matches: 176, Mismatches: 26, Indels: 36
0.74 0.11 0.15
Matches are distributed among these distances:
42 3 0.02
43 7 0.04
44 3 0.02
45 2 0.01
46 87 0.49
47 59 0.34
48 2 0.01
49 3 0.02
50 7 0.04
51 3 0.02
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:35910799 original size:47 final size:47
Alignment explanation
Indices: 35910678--35910897 Score: 185
Period size: 47 Copynumber: 4.7 Consensus size: 47
35910668 AGGATATTTG
*
35910678 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-GATGCGAA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTA
* *
35910727 -G--TCTGAACTTGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTA
* * * *
35910771 GGCATCTGAGCTCGTTGAGTTGATTCCGAGTTCACTTATG-GATGCGAA-T-
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA---A-GAGATG-TAACTA
*
35910820 -G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTA
*
35910864 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCA
35910898 CTTGTGGATG
Statistics
Matches: 140, Mismatches: 14, Indels: 36
0.74 0.07 0.19
Matches are distributed among these distances:
42 6 0.04
43 12 0.09
45 2 0.01
46 54 0.39
47 55 0.39
48 2 0.01
50 6 0.04
51 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.29, T:0.30
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCAAGAGATGTAACTA
Found at i:35910943 original size:93 final size:93
Alignment explanation
Indices: 35910678--35910943 Score: 424
Period size: 93 Copynumber: 2.9 Consensus size: 93
35910668 AGGATATTTG
* * *
35910678 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTTGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
*
35910743 TTGAGTCCGAGTTCAAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
35910771 GGCATCTGAGCTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
35910836 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* * * * *
35910864 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTGTGGATGCGAACGCCCGAGCTCATTGAG
1 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
*
35910929 TTGAGTCTGAGTTCG
66 TTGAGTCCGAGTTCG
35910944 CTTATGGGCG
Statistics
Matches: 159, Mismatches: 14, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 159 1.00
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (93 bp):
GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:35920745 original size:37 final size:37
Alignment explanation
Indices: 35920695--35920773 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
35920685 TTATTACGAA
* * * *
35920695 GTCTTACTCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCAGCGG
*
35920732 GTCTTACCCGGACAAAATTCCCACACGTAGTCAGCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCAGCGG
35920769 GTCTT
1 GTCTT
35920774 TAGAGCTCGG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCAGCGG
Found at i:35920969 original size:47 final size:47
Alignment explanation
Indices: 35920891--35921147 Score: 397
Period size: 47 Copynumber: 5.5 Consensus size: 47
35920881 CCCTTCGGGA
* * * * * * *
35920891 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
35920938 CCTGTCACATAAATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35920985 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
35921032 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
35921079 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
35921126 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
35921148 TTGGCTGAAT
Statistics
Matches: 192, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 192 1.00
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:35927101 original size:6 final size:5
Alignment explanation
Indices: 35927080--35927122 Score: 52
Period size: 5 Copynumber: 8.2 Consensus size: 5
35927070 CGATGATGAT
35927080 TTTTAA TTTTA TTTTA TCTTTA TTTTTA TTTT- TTTTA TTTTA T
1 TTTT-A TTTTA TTTTA T-TTTA -TTTTA TTTTA TTTTA TTTTA T
35927123 GTTGTTATTA
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
4 4 0.12
5 17 0.50
6 12 0.35
7 1 0.03
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:35927106 original size:12 final size:11
Alignment explanation
Indices: 35927078--35927122 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
35927068 GGCGATGATG
35927078 ATTTTTAATTTT
1 ATTTTT-ATTTT
35927090 A-TTTTATCTTT
1 ATTTTTAT-TTT
35927101 ATTTTTA-TTT
1 ATTTTTATTTT
35927111 -TTTTTATTTT
1 ATTTTTATTTT
35927121 AT
1 AT
35927123 GTTGTTATTA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
9 6 0.21
10 8 0.28
11 9 0.31
12 6 0.21
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (11 bp):
ATTTTTATTTT
Found at i:35939223 original size:14 final size:15
Alignment explanation
Indices: 35939204--35939233 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
35939194 ATATTTGACT
35939204 TGTTCTTAATT-TTG
1 TGTTCTTAATTCTTG
35939218 TGTTCTTAATTCTTG
1 TGTTCTTAATTCTTG
35939233 T
1 T
35939234 TTTGATATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.13, C:0.10, G:0.13, T:0.63
Consensus pattern (15 bp):
TGTTCTTAATTCTTG
Found at i:35959433 original size:43 final size:43
Alignment explanation
Indices: 35959278--35959434 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
35959268 TATTTTTTTG
* * *
35959278 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTACA
* ***
35959322 TGTAAGACCACGTCTGGGACATTGACATCG-TATTTGATTTTT
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
*
35959364 TGTAAGACC-CTGTCTGGGACAATGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTACA
* *
35959407 TGTAAGACCACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
35959435 TGTACGGGAT
Statistics
Matches: 95, Mismatches: 14, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
41 1 0.01
42 29 0.31
43 36 0.38
44 29 0.31
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
Found at i:35964199 original size:34 final size:34
Alignment explanation
Indices: 35964154--35964242 Score: 99
Period size: 34 Copynumber: 2.6 Consensus size: 34
35964144 TGAACAGTCT
* * * *
35964154 GGGCCTAAGCCCATATCAGTCATAATATCAGTGC
1 GGGCCTTAGCCCATATCAGTAACAATATCAATGC
* *
35964188 GGGCCTTAGCCCA-ATACAGTAACAGTATCAATGT
1 GGGCCTTAGCCCATAT-CAGTAACAATATCAATGC
*
35964222 GGGCCTTAGCCCATTTCAGTA
1 GGGCCTTAGCCCATATCAGTA
35964243 TAGTATTAGA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
33 2 0.04
34 43 0.93
35 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (34 bp):
GGGCCTTAGCCCATATCAGTAACAATATCAATGC
Found at i:35972179 original size:42 final size:41
Alignment explanation
Indices: 35971977--35972181 Score: 191
Period size: 43 Copynumber: 4.9 Consensus size: 41
35971967 GTCTGAGTCA
*
35971977 TCGTGTAAGACCATGTCTGGGACATAGGCCTCGATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCGATT-AGATT
* * * *
35972019 TACATATAAGACCATGTCTGGGACATCGACATCGTATCT-GATT
1 T-CGTGTAAGACCATGTCTGGGACATAGGCATCG-AT-TAGATT
* * *
35972062 TCGTGTAAGACCGA-GTCTAGGACACAGGCGTCGATTGAGATT
1 TCGTGTAAGACC-ATGTCTGGGACATAGGCATCGATT-AGATT
* * *
35972104 TACGTATAAGACCATGTCTGGGACATCGACATCGTATCT-GATT
1 T-CGTGTAAGACCATGTCTGGGACATAGGCATCG-AT-TAGATT
* *
35972147 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGAT
1 TCGTGTAAGACCATGTCTGGGACATAGGCATCGAT
35972182 ATTGAATTAC
Statistics
Matches: 130, Mismatches: 23, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
40 1 0.01
41 4 0.03
42 57 0.44
43 62 0.48
44 4 0.03
45 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (41 bp):
TCGTGTAAGACCATGTCTGGGACATAGGCATCGATTAGATT
Found at i:35972212 original size:85 final size:85
Alignment explanation
Indices: 35971977--35972181 Score: 331
Period size: 85 Copynumber: 2.4 Consensus size: 85
35971967 GTCTGAGTCA
* *
35971977 TCGTGTAAGACCATGTCTGGGACATAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCATGTCTGGGA
35972042 CATCGACATCGTATCTGATT
66 CATCGACATCGTATCTGATT
* * *
35972062 TCGTGTAAGACCGA-GTCTAGGACACAGGCGTCGATTGAGATTTACGTATAAGACCATGTCTGGG
1 TCGTGTAAGACC-ATGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCATGTCTGGG
35972126 ACATCGACATCGTATCTGATT
65 ACATCGACATCGTATCTGATT
* *
35972147 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGAT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGAT
35972182 ATTGAATTAC
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
85 109 0.99
86 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (85 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCATGTCTGGGA
CATCGACATCGTATCTGATT
Found at i:35973363 original size:22 final size:22
Alignment explanation
Indices: 35973331--35973372 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
35973321 TGATGTCAGT
35973331 TACGGGATAGGGGTGTTACATA
1 TACGGGATAGGGGTGTTACATA
*
35973353 TACGGGTTAGGGGTGTTACA
1 TACGGGATAGGGGTGTTACA
35973373 CTAAAGCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.10, G:0.38, T:0.29
Consensus pattern (22 bp):
TACGGGATAGGGGTGTTACATA
Found at i:35975956 original size:43 final size:44
Alignment explanation
Indices: 35975909--35976024 Score: 109
Period size: 43 Copynumber: 2.7 Consensus size: 44
35975899 AACCACATGT
35975909 CGATGC-CACTGTCCTAGACA-GGATCTTACAC-AAATCACAATTA
1 CGATGCTCA-TGTCCTAGACATGG-TCTTACACGAAATCACAATTA
* *
35975952 CGATGCTGATGTCCTAGACATGGTCTTACTCGAAATCACATATT-
1 CGATGCTCATGTCCTAGACATGGTCTTACACGAAATCACA-ATTA
* * *
35975996 -GATGC-CAACGTCCCAGACGTGGTCTTACA
1 CGATGCTC-ATGTCCTAGACATGGTCTTACA
35976025 TGAGAACACA
Statistics
Matches: 61, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
43 47 0.77
44 11 0.18
45 3 0.05
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (44 bp):
CGATGCTCATGTCCTAGACATGGTCTTACACGAAATCACAATTA
Found at i:35983506 original size:36 final size:33
Alignment explanation
Indices: 35983439--35983506 Score: 82
Period size: 35 Copynumber: 2.0 Consensus size: 33
35983429 AAAGAAACAC
* *
35983439 AAAAAAGAAAAATGGAATTAAAATTTAACAAAA
1 AAAAAAGAAAAATGCAAATAAAATTTAACAAAA
*
35983472 AAAAAAGACCAAAATGCAAATAATAATTTCACAAA
1 AAAAAAGA--AAAATGCAAATAA-AATTTAACAAA
35983507 TAATGTCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
33 8 0.28
35 11 0.38
36 10 0.34
ACGTcount: A:0.66, C:0.09, G:0.07, T:0.18
Consensus pattern (33 bp):
AAAAAAGAAAAATGCAAATAAAATTTAACAAAA
Found at i:35993023 original size:27 final size:27
Alignment explanation
Indices: 35992992--35993169 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
35992982 TAAATTGTAC
35992992 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
35993019 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35993045 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
35993073 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
35993101 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
35993128 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
35993155 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
35993170 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:35993106 original size:82 final size:81
Alignment explanation
Indices: 35992993--35993148 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
35992983 AAATTGTACA
* *
35992993 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
35993057 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
35993074 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
35993139 TGCGAGTTGA
65 TGCGAATTGA
35993149 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:35993160 original size:82 final size:81
Alignment explanation
Indices: 35992989--35993169 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
35992979 GATTAAATTG
* *
35992989 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
35993054 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
35993070 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
35993134 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
35993152 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
35993170 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36000213 original size:27 final size:27
Alignment explanation
Indices: 36000182--36000359 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36000172 TAAATTGTAC
36000182 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36000209 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36000235 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36000263 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36000291 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36000318 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36000345 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36000360 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36000296 original size:82 final size:81
Alignment explanation
Indices: 36000183--36000338 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36000173 AAATTGTACA
* *
36000183 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36000247 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36000264 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36000329 TGCGAGTTGA
65 TGCGAATTGA
36000339 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36000350 original size:82 final size:81
Alignment explanation
Indices: 36000179--36000359 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36000169 GATTAAATTG
* *
36000179 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36000244 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36000260 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36000324 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36000342 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36000360 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36018330 original size:27 final size:27
Alignment explanation
Indices: 36018299--36018476 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36018289 TAAATTGTAC
36018299 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36018326 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36018352 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36018380 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36018408 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36018435 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36018462 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36018477 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36018413 original size:82 final size:81
Alignment explanation
Indices: 36018300--36018455 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36018290 AAATTGTACA
* *
36018300 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36018364 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36018381 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36018446 TGCGAGTTGA
65 TGCGAATTGA
36018456 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36018467 original size:82 final size:81
Alignment explanation
Indices: 36018296--36018476 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36018286 GATTAAATTG
* *
36018296 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36018361 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36018377 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36018441 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36018459 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36018477 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36025710 original size:49 final size:49
Alignment explanation
Indices: 36025605--36025733 Score: 124
Period size: 49 Copynumber: 2.7 Consensus size: 49
36025595 CTTCGGGACT
* * * *
36025605 TATCACAT-T-TATGCACTTTCACATCCATCACGTTGGCCACTCGGCCC
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* * * *
36025652 TGTCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
* *
36025701 TATCTC--ATATATGCA-TGTTCACATCCATCACAT
1 TATCACATATATATACACT-TTCACATCCATCACAT
36025734 AGAATCCTAA
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
46 1 0.01
47 30 0.45
48 1 0.01
49 35 0.52
ACGTcount: A:0.26, C:0.31, G:0.10, T:0.33
Consensus pattern (49 bp):
TATCACATATATATACACTTTCACATCCATCACATCGGCCACTAGGCCC
Done.