Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 110 of 186
Found at i:36388306 original size:46 final size:46
Alignment explanation
Indices: 36388221--36388390 Score: 141
Period size: 46 Copynumber: 3.7 Consensus size: 46
36388211 TATGAAAGCC
* * * *
36388221 AGTGTAAGACCATGTCTA-GATATTGCATCGGCATTGAGACGGGTGCT
1 AGTGTAAGA-CATGTTTAGGACA-TGCATCGGCCTCGAGACGGGTGCT
* ** *** *
36388268 AGTGTAAGACATCTCAAGGACATGCATCGGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGACGGGTGCT
* * *
36388314 AGTGTCAGACATGTTTGGGACATGCATCGGCCTCAAGA--GGTG-T
1 AGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGACGGGTGCT
36388357 CAGTGTAAGACCATGTTTAGGACATGGCATCGGC
1 -AGTGTAAGA-CATGTTTAGGACAT-GCATCGGC
36388391 ACAGATATGC
Statistics
Matches: 98, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
44 9 0.09
45 13 0.13
46 64 0.65
47 12 0.12
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTTTAGGACATGCATCGGCCTCGAGACGGGTGCT
Found at i:36389485 original size:20 final size:21
Alignment explanation
Indices: 36389446--36389485 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36389436 AAATTAATGG
*
36389446 CTACACGAGCGTGTTGCCCTT
1 CTACACGAGCATGTTGCCCTT
*
36389467 CTACACGGGCATG-TGCCCT
1 CTACACGAGCATGTTGCCCT
36389486 GTTCCAGAGC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.35, G:0.25, T:0.25
Consensus pattern (21 bp):
CTACACGAGCATGTTGCCCTT
Found at i:36394284 original size:18 final size:18
Alignment explanation
Indices: 36394261--36394296 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
36394251 TAAACATATG
36394261 ATAGTTTAGCCGATTTTA
1 ATAGTTTAGCCGATTTTA
*
36394279 ATAGTTTCGCCGATTTTA
1 ATAGTTTAGCCGATTTTA
36394297 TCTTCTGAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.14, G:0.17, T:0.44
Consensus pattern (18 bp):
ATAGTTTAGCCGATTTTA
Found at i:36400782 original size:13 final size:13
Alignment explanation
Indices: 36400764--36400788 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36400754 TAAGATGAGT
36400764 TTGCTTATGTTTG
1 TTGCTTATGTTTG
36400777 TTGCTTATGTTT
1 TTGCTTATGTTT
36400789 TGAATCCTAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.20, T:0.64
Consensus pattern (13 bp):
TTGCTTATGTTTG
Found at i:36401753 original size:36 final size:37
Alignment explanation
Indices: 36401698--36401794 Score: 178
Period size: 36 Copynumber: 2.6 Consensus size: 37
36401688 TGTTAATTTC
36401698 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
*
36401735 AAGACTTATGTAAT-TTTTTTATTATGTAGTGATTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
36401771 AAGACTTATGTAATGTTTTTAATT
1 AAGACTTATGTAATGTTTTTAATT
36401795 CGGTTAATTC
Statistics
Matches: 57, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
36 35 0.61
37 22 0.39
ACGTcount: A:0.32, C:0.05, G:0.14, T:0.48
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTCA
Found at i:36401801 original size:9 final size:9
Alignment explanation
Indices: 36401789--36401857 Score: 102
Period size: 9 Copynumber: 7.7 Consensus size: 9
36401779 TGTAATGTTT
36401789 TTAATTCGG
1 TTAATTCGG
36401798 TTAATTCGG
1 TTAATTCGG
**
36401807 TTAATTAAG
1 TTAATTCGG
36401816 TTAATTCGG
1 TTAATTCGG
*
36401825 TTAATTCGA
1 TTAATTCGG
36401834 TTAATTCGG
1 TTAATTCGG
*
36401843 TTAATTCAG
1 TTAATTCGG
36401852 TTAATT
1 TTAATT
36401858 TTTAACCAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 53 1.00
ACGTcount: A:0.29, C:0.09, G:0.16, T:0.46
Consensus pattern (9 bp):
TTAATTCGG
Found at i:36402149 original size:27 final size:27
Alignment explanation
Indices: 36402127--36402241 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 27
36402117 AGAATTACTG
*
36402127 AAATACCTTTTGTTTACAAAATTACCA
1 AAATACCTTTGGTTTACAAAATTACCA
* * *
36402154 AAATACC-CTCGATTAGCAAAATTACCA
1 AAATACCTTTGGTTTA-CAAAATTACCA
* **
36402181 AAATACCCTTGGTTTGTAAAATTACCA
1 AAATACCTTTGGTTTACAAAATTACCA
**
36402208 AAATACCTTTGGTTTGTAAAATTACCA
1 AAATACCTTTGGTTTACAAAATTACCA
36402235 AAATACC
1 AAATACC
36402242 CCTAATTTGT
Statistics
Matches: 77, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
26 5 0.06
27 68 0.88
28 4 0.05
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATACCTTTGGTTTACAAAATTACCA
Found at i:36402185 original size:54 final size:54
Alignment explanation
Indices: 36402127--36402404 Score: 170
Period size: 54 Copynumber: 5.1 Consensus size: 54
36402117 AGAATTACTG
* *
36402127 AAATACCTTTTGTTTACAAAATTACCAAAATACCCTCGATTAGCAAAATTACCA
1 AAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGCAAAATTACCA
** * * * * *
36402181 AAATACCCTTGGTTTGTAAAATTACCAAAATACCTTTGGTTTGTAAAATTACCA
1 AAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGCAAAATTACCA
* ** *** * * * *
36402235 AAATACCCCTAATTTGTGAAATTATCAAAATACCCTTGACTT-GTAAAATTACCG
1 AAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGA-TTAGCAAAATTACCA
*** ** * * * *
36402289 AAATACCCTCAATTTGTAAAGTTACCAAAATACCC-CTAATTTGGAAAATTACCA
1 AAATACCCTTGGTTTACAAAATTACCAAAATACCCTC-GATTAGCAAAATTACCA
* ** * * *
36402343 AAATACCCTTGATTTGGAAATTTACAAAAATATCCCT-GATTTA-CAAAA-TAACA
1 AAATACCCTTGGTTTACAAAATTACCAAAATA-CCCTCGA-TTAGCAAAATTACCA
36402396 GAAATACCC
1 -AAATACCC
36402405 ATGACTTTCA
Statistics
Matches: 182, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
53 6 0.03
54 169 0.93
55 7 0.04
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AAATACCCTTGGTTTACAAAATTACCAAAATACCCTCGATTAGCAAAATTACCA
Found at i:36402229 original size:81 final size:81
Alignment explanation
Indices: 36402127--36402374 Score: 300
Period size: 81 Copynumber: 3.1 Consensus size: 81
36402117 AGAATTACTG
* ** * *
36402127 AAATACCTTTTGTTTACAAAATTACCAAAATA-CCCTCGATTAGCAAAATTACCAAAATACCCTT
1 AAATACCTTTAGTTTGTAAAATTACCAAAATACCCCT-AATTTGCAAAATTACCAAAATACCCTT
*
36402191 GGTTTGTAAAATTACCA
65 GATTTGTAAAATTACCA
* ** *
36402208 AAATACCTTTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTGAAATTATCAAAATACCCTTG
1 AAATACCTTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGCAAAATTACCAAAATACCCTTG
* *
36402273 ACTTGTAAAATTACCG
66 ATTTGTAAAATTACCA
* * * * *
36402289 AAATACCCTCAATTTGTAAAGTTACCAAAATACCCCTAATTTGGAAAATTACCAAAATACCCTTG
1 AAATACCTTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGCAAAATTACCAAAATACCCTTG
* * *
36402354 ATTTGGAAATTTACAA
66 ATTTGTAAAATTACCA
36402370 AAATA
1 AAATA
36402375 TCCCTGATTT
Statistics
Matches: 142, Mismatches: 24, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
81 138 0.97
82 4 0.03
ACGTcount: A:0.41, C:0.19, G:0.08, T:0.31
Consensus pattern (81 bp):
AAATACCTTTAGTTTGTAAAATTACCAAAATACCCCTAATTTGCAAAATTACCAAAATACCCTTG
ATTTGTAAAATTACCA
Found at i:36402250 original size:27 final size:27
Alignment explanation
Indices: 36402144--36402384 Score: 252
Period size: 27 Copynumber: 8.9 Consensus size: 27
36402134 TTTTGTTTAC
* *
36402144 AAAATTACCAAAATA-CCCTCGATTAGC
1 AAAATTACCAAAATACCCCT-GATTTGT
* *
36402171 AAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
** *
36402198 AAAATTACCAAAATACCTTTGGTTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
*
36402225 AAAATTACCAAAATACCCCTAATTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* * * *
36402252 GAAATTATCAAAATACCCTTGACTTGT
1 AAAATTACCAAAATACCCCTGATTTGT
* *
36402279 AAAATTACCGAAATA-CCCTCAATTTGT
1 AAAATTACCAAAATACCCCT-GATTTGT
* * *
36402306 AAAGTTACCAAAATACCCCTAATTTGG
1 AAAATTACCAAAATACCCCTGATTTGT
* *
36402333 AAAATTACCAAAATACCCTTGATTTGG
1 AAAATTACCAAAATACCCCTGATTTGT
* * *
36402360 AAATTTACAAAAATATCCCTGATTT
1 AAAATTACCAAAATACCCCTGATTT
36402385 ACAAAATAAC
Statistics
Matches: 181, Mismatches: 30, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
26 3 0.02
27 171 0.94
28 7 0.04
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAAATTACCAAAATACCCCTGATTTGT
Found at i:36402444 original size:28 final size:27
Alignment explanation
Indices: 36402415--36402467 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
36402405 ATGACTTTCA
36402415 AAAATTATAGAAATACCATTGGTTTGC
1 AAAATTATAGAAATACCATTGGTTTGC
* *
36402442 AAAATTATTGAAATACCCTTGGTTTG
1 AAAATTATAGAAATACCATTGGTTTG
36402468 TAGATTTACC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTGGTTTGC
Found at i:36402599 original size:27 final size:27
Alignment explanation
Indices: 36402569--36402623 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
36402559 ATAAAGTTCC
*
36402569 TGTAGGGTAAAGTGACGATAATACCCT
1 TGTAGGGTAAAATGACGATAATACCCT
* * *
36402596 TGTATGGTAAAATGACGATTATGCCCT
1 TGTAGGGTAAAATGACGATAATACCCT
36402623 T
1 T
36402624 ATGTCTCATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (27 bp):
TGTAGGGTAAAATGACGATAATACCCT
Found at i:36402791 original size:27 final size:26
Alignment explanation
Indices: 36402761--36402837 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 26
36402751 GTAGGGTGAG
*
36402761 TATGTCACATTCACTGTTACTGGTGGC
1 TATGCCACATT-ACTGTTACTGGTGGC
* *
36402788 TATGCCACAATTACTGATACAGGTGGC
1 TATGCCAC-ATTACTGTTACTGGTGGC
* *
36402815 TTTGCCACATTTACTGTTTCTGG
1 TATGCCACA-TTACTGTTACTGG
36402838 CATCTATGCT
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 1 0.02
27 37 0.90
28 3 0.07
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (26 bp):
TATGCCACATTACTGTTACTGGTGGC
Found at i:36403038 original size:28 final size:27
Alignment explanation
Indices: 36402998--36403057 Score: 84
Period size: 28 Copynumber: 2.2 Consensus size: 27
36402988 ACTGTATTGT
*
36402998 TACTGCATTGGGCTTAGGCCCACACTG
1 TACTGCATAGGGCTTAGGCCCACACTG
* *
36403025 CTACTGTATAGGGCTTAGGCCCAGACTG
1 -TACTGCATAGGGCTTAGGCCCACACTG
36403053 TACTG
1 TACTG
36403058 ATACTGAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 5 0.17
28 24 0.83
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.27
Consensus pattern (27 bp):
TACTGCATAGGGCTTAGGCCCACACTG
Found at i:36403069 original size:33 final size:33
Alignment explanation
Indices: 36403021--36403095 Score: 114
Period size: 33 Copynumber: 2.3 Consensus size: 33
36403011 TTAGGCCCAC
* *
36403021 ACTGCTACTGTATAGGGCTTAGGCCCAGACTGT
1 ACTGATACTGAATAGGGCTTAGGCCCAGACTGT
* *
36403054 ACTGATACTGAATAGGGCTTTGGCCTAGACTGT
1 ACTGATACTGAATAGGGCTTAGGCCCAGACTGT
36403087 ACTGATACT
1 ACTGATACT
36403096 ATATTATTCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (33 bp):
ACTGATACTGAATAGGGCTTAGGCCCAGACTGT
Found at i:36410571 original size:17 final size:18
Alignment explanation
Indices: 36410549--36410582 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
36410539 CTTATTTTTA
36410549 AATAAAATAATA-GCATT
1 AATAAAATAATATGCATT
*
36410566 AATAAATTAATATGCAT
1 AATAAAATAATATGCAT
36410583 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.56, C:0.06, G:0.06, T:0.32
Consensus pattern (18 bp):
AATAAAATAATATGCATT
Found at i:36429561 original size:49 final size:49
Alignment explanation
Indices: 36429267--36429586 Score: 200
Period size: 49 Copynumber: 6.7 Consensus size: 49
36429257 AGGGTACGAC
* * * *
36429267 GTCGACGCCATGTTCCAAACATGGTCTTACACTGGCTCTCAC--ATCTAA
1 GTCGATGCCATGTCCCAGACA-GGTCTTACACTAGCTCTCACTTATCTAA
* * * * *
36429315 GTCGATGCCATGTTCCAAACAGGTCTTACACTAACT-T-ACATA-CATTGA
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACTTATC--TAA
* * * * * *
36429363 GGCTAATGCCATG-CCTTAGACAGGTCTTATACTGGCTCTCACTTATCTAT
1 GTC-GATGCCATGTCC-CAGACAGGTCTTACACTAGCTCTCACTTATCTAA
* * * * *
36429413 GTCGATTCCATATCCCAGACAGGTCTTACACTA--ACACAC--CTC-AA
1 GTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACTTATCTAA
* * * * *
36429457 G-CTGATGCCATGTCCTAGATAGGTCTTCCACTAGCT-T-ACATATCTTGA
1 GTC-GATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACTTATC-TAA
* * **
36429505 GACCGATGCCATGTCCCAGATAGGTCTTACACTAGCTCTCACTTATCTTT
1 G-TCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACTTATCTAA
*
36429555 GTCGATGCCATGTCCCAGACAGGTCCTACACT
1 GTCGATGCCATGTCCCAGACAGGTCTTACACT
36429587 GACACATACA
Statistics
Matches: 208, Mismatches: 43, Indels: 41
0.71 0.15 0.14
Matches are distributed among these distances:
43 1 0.00
44 29 0.14
45 4 0.02
46 4 0.02
47 18 0.09
48 27 0.13
49 104 0.50
50 10 0.05
51 10 0.05
52 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (49 bp):
GTCGATGCCATGTCCCAGACAGGTCTTACACTAGCTCTCACTTATCTAA
Found at i:36429574 original size:142 final size:142
Alignment explanation
Indices: 36429318--36429592 Score: 358
Period size: 142 Copynumber: 1.9 Consensus size: 142
36429308 CATCTAAGTC
* * *
36429318 GATGCCATGTTCCAAACAGGTCTTACACTAACTTACATACATTGAGGCTAATGCCATGCCTTAGA
1 GATGCCATGTTCCAAACAGGTCTTACACTAACTTACATACATTGAGACCAATGCCATGCCTCAGA
* * * *
36429383 CAGGTCTTATACTGGCTCTCACTTATCTATGTCGATTCCATATCCCAGACAGGTCTTACACTAAC
66 CAGGTCTTACACTAGCTCTCACTTATCTATGTCGATGCCATATCCCAGACAGGTCCTACACTAAC
36429448 ACACCTCAAGCT
131 ACACCTCAAGCT
* * * * *
36429460 GATGCCATG-TCCTAGATAGGTCTTCCACTAGCTTACATATC-TTGAGACCGATGCCATGTCC-C
1 GATGCCATGTTCC-AAACAGGTCTTACACTAACTTACATA-CATTGAGACCAATGCCATG-CCTC
* * *
36429522 AGATAGGTCTTACACTAGCTCTCACTTATCTTTGTCGATGCCATGTCCCAGACAGGTCCTACACT
63 AGACAGGTCTTACACTAGCTCTCACTTATCTATGTCGATGCCATATCCCAGACAGGTCCTACACT
*
36429587 GACACA
128 AACACA
36429593 TACATCACCC
Statistics
Matches: 114, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
141 3 0.03
142 108 0.95
143 3 0.03
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (142 bp):
GATGCCATGTTCCAAACAGGTCTTACACTAACTTACATACATTGAGACCAATGCCATGCCTCAGA
CAGGTCTTACACTAGCTCTCACTTATCTATGTCGATGCCATATCCCAGACAGGTCCTACACTAAC
ACACCTCAAGCT
Found at i:36434681 original size:27 final size:27
Alignment explanation
Indices: 36434651--36434707 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
36434641 TTTATATGAA
*
36434651 AATATACTAATTAAGATTTAATTGCAT
1 AATATACTAATTAAGATTTAATTCCAT
*
36434678 AATATACTTATTAAGATTTAATTCCAT
1 AATATACTAATTAAGATTTAATTCCAT
36434705 AAT
1 AAT
36434708 TTATTTGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (27 bp):
AATATACTAATTAAGATTTAATTCCAT
Found at i:36434725 original size:24 final size:27
Alignment explanation
Indices: 36434651--36434725 Score: 84
Period size: 27 Copynumber: 2.9 Consensus size: 27
36434641 TTTATATGAA
* * *
36434651 AATATACTAATTAAGATTTAATTGCAT
1 AATATACTTATGAAGATTTAATTCCAT
*
36434678 AATATACTTATTAAGATTTAATTCCAT
1 AATATACTTATGAAGATTTAATTCCAT
*
36434705 AATTTA-TT-TGAA-ATTTAATTC
1 AATATACTTATGAAGATTTAATTC
36434726 AACTTACATA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
24 9 0.20
25 3 0.07
26 2 0.05
27 30 0.68
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.45
Consensus pattern (27 bp):
AATATACTTATGAAGATTTAATTCCAT
Found at i:36435090 original size:49 final size:49
Alignment explanation
Indices: 36435030--36435203 Score: 249
Period size: 49 Copynumber: 3.5 Consensus size: 49
36435020 CTAGTACGCA
*
36435030 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
* * * ** * *
36435079 TAGTAGTCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AATAATCCGGTACACG
36435129 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
* *
36435178 TAGTATCCTGCACTTAGTACTGCACA
1 TAGTAGCCTGCACTTAGTACTACACA
36435204 CATGACCTCA
Statistics
Matches: 108, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
49 66 0.61
50 42 0.39
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.25
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACG
Found at i:36435204 original size:99 final size:99
Alignment explanation
Indices: 36435030--36435211 Score: 321
Period size: 99 Copynumber: 1.8 Consensus size: 99
36435020 CTAGTACGCA
*
36435030 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACACGTAGTAGTCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGTCTGCACTTA
*
36435095 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACATGACCTAACCATCTGATACACG
36435129 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTA-TCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGT-CTGCACTT
*
36435193 AGTACTGCACACATGACCT
65 AGTACTACACACATGACCT
36435212 CACAATATAT
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
98 1 0.01
99 78 0.99
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.25
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACACGTAGTAGTCTGCACTTA
GTACTACACACATGACCTAACCATCTGATACACG
Found at i:36441917 original size:47 final size:47
Alignment explanation
Indices: 36441769--36442097 Score: 532
Period size: 47 Copynumber: 6.9 Consensus size: 47
36441759 NNNNNNNNNN
*
36441769 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTT
1 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
*
36441818 AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTT
1 AATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCT
36441867 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
36441914 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
36441961 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * *
36442008 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCG
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* * * * *
36442055 AGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
36442098 TCCCGAAGGG
Statistics
Matches: 269, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 192 0.71
49 77 0.29
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
Found at i:36442272 original size:37 final size:37
Alignment explanation
Indices: 36442216--36442294 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
36442206 CCGAGCTCTA
* * *
36442216 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
36442253 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
36442290 AAGAC
1 AAGAC
36442295 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:36447022 original size:5 final size:5
Alignment explanation
Indices: 36446993--36447081 Score: 65
Period size: 5 Copynumber: 16.8 Consensus size: 5
36446983 ACTCCTATTT
* *
36446993 TTTTA -TTTA TTCTTA TTTCTA TTTTA TTTTA TTTTTCT TTTTC TTTTGA
1 TTTTA TTTTA TT-TTA TTT-TA TTTTA TTTTA -TTTT-A TTTTA TTTT-A
* *
36447042 TTTTTA TTTTCA TTTCA TTTT- TATTA TTTTA TTTTA TTTT
1 -TTTTA TTTT-A TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
36447082 GAAAGACATA
Statistics
Matches: 68, Mismatches: 7, Indels: 18
0.73 0.08 0.19
Matches are distributed among these distances:
4 7 0.10
5 34 0.50
6 23 0.34
7 4 0.06
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTTA
Found at i:36447046 original size:7 final size:6
Alignment explanation
Indices: 36446988--36447081 Score: 63
Period size: 6 Copynumber: 16.0 Consensus size: 6
36446978 CATTGACTCC
* * *
36446988 TATTTT T-TTATT TATTCT TATTTC TA-TTT TA-TTT TATTTT TCTTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* * * *
36447034 TCTTTT GATTTT TATTTT CA-TTT CATTTT TATTATT T-TATTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATT-TT TAT-TTT TATTTT
36447082 GAAAGACATA
Statistics
Matches: 71, Mismatches: 10, Indels: 14
0.75 0.11 0.15
Matches are distributed among these distances:
5 16 0.23
6 48 0.68
7 7 0.10
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.77
Consensus pattern (6 bp):
TATTTT
Found at i:36447056 original size:12 final size:11
Alignment explanation
Indices: 36446992--36447081 Score: 66
Period size: 11 Copynumber: 8.4 Consensus size: 11
36446982 GACTCCTATT
36446992 TTTTTA-TTTA
1 TTTTTATTTTA
*
36447002 TTCTTATTTCTA
1 TTTTTATTT-TA
36447014 -TTTTATTTTA
1 TTTTTATTTTA
*
36447024 TTTTTCTTTT-
1 TTTTTATTTTA
36447034 TCTTTTGATTTTTA
1 T-TTTT-A-TTTTA
* *
36447048 TTTTCATTTCA
1 TTTTTATTTTA
36447059 TTTTTA--TTA
1 TTTTTATTTTA
36447068 -TTTTATTTTA
1 TTTTTATTTTA
36447078 TTTT
1 TTTT
36447082 GAAAGACATA
Statistics
Matches: 62, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
8 5 0.08
9 2 0.03
10 11 0.18
11 33 0.53
12 3 0.05
13 7 0.11
14 1 0.02
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.77
Consensus pattern (11 bp):
TTTTTATTTTA
Found at i:36447070 original size:20 final size:19
Alignment explanation
Indices: 36447012--36447081 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 19
36447002 TTCTTATTTC
* *
36447012 TATTTTATTTTATTTTTCT
1 TATTTTATTTCATTTTTAT
*
36447031 T-TTTCT-TTTGATTTTTA-
1 TATTT-TATTTCATTTTTAT
*
36447048 T-TTTCATTTCATTTTTAT
1 TATTTTATTTCATTTTTAT
*
36447066 TATTTTATTTTATTTT
1 TATTTTATTTCATTTT
36447082 GAAAGACATA
Statistics
Matches: 41, Mismatches: 6, Indels: 8
0.75 0.11 0.15
Matches are distributed among these distances:
17 14 0.34
18 13 0.32
19 14 0.34
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.77
Consensus pattern (19 bp):
TATTTTATTTCATTTTTAT
Found at i:36455333 original size:49 final size:47
Alignment explanation
Indices: 36455272--36455448 Score: 178
Period size: 49 Copynumber: 3.6 Consensus size: 47
36455262 TATAAGTCGG
36455272 TGCCATGTCCCAGACAGGTCTTACACTGACTTACATACATCAAGGCCGA
1 TGCCATGTCCCAGACAGGTCTTACACTGACTT-CATACATC-AGGCCGA
* * * * * * * *
36455321 CGCCATGTCCCAGATAGCTTTTACACTGGCTCTCACT-TATCTGTGTCGA
1 TGCCATGTCCCAGACAGGTCTTACACTGACT-TCA-TACATCAG-GCCGA
* *
36455370 TGCCATGTCCCAGACAGGTCTTACACT-AGCTTGCATATCTTGAGGCCGA
1 TGCCATGTCCCAGACAGGTCTTACACTGA-CTT-CATA-CATCAGGCCGA
36455419 TGCCATGTCCCAGACAGGTCTTACACTGAC
1 TGCCATGTCCCAGACAGGTCTTACACTGAC
36455449 ACGCATGTCA
Statistics
Matches: 102, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
48 3 0.03
49 94 0.92
50 5 0.05
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (47 bp):
TGCCATGTCCCAGACAGGTCTTACACTGACTTCATACATCAGGCCGA
Found at i:36455385 original size:98 final size:96
Alignment explanation
Indices: 36455219--36455446 Score: 262
Period size: 98 Copynumber: 2.3 Consensus size: 96
36455209 AGGTTACGAT
* * * * *
36455219 GCCGACACCATGTTCCAAACATGGTCTTACACTGGCTCTCACATATAAGTCGGTGCCATGTCCCA
1 GCCGACGCCATGTCCCAGACA-GCTCTTACACTGGCTCTCACATATAAGTCGATGCCATGTCCCA
36455284 GACAGGTCTTACACT-GACTTACATA-CATCAAG
65 GACAGGTCTTACACTAG-CTTACATATC-TCAAG
* * * **
36455316 GCCGACGCCATGTCCCAGATAGCTTTTACACTGGCTCTCACTTATCTGTGTCGATGCCATGTCCC
1 GCCGACGCCATGTCCCAGACAGCTCTTACACTGGCTCTCAC--ATATAAGTCGATGCCATGTCCC
* **
36455381 AGACAGGTCTTACACTAGCTTGCATATCTTGAG
64 AGACAGGTCTTACACTAGCTTACATATCTCAAG
* *
36455414 GCCGATGCCATGTCCCAGACAGGTCTTACACTG
1 GCCGACGCCATGTCCCAGACAGCTCTTACACTG
36455447 ACACGCATGT
Statistics
Matches: 110, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
96 18 0.16
97 17 0.15
98 73 0.66
99 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (96 bp):
GCCGACGCCATGTCCCAGACAGCTCTTACACTGGCTCTCACATATAAGTCGATGCCATGTCCCAG
ACAGGTCTTACACTAGCTTACATATCTCAAG
Found at i:36459609 original size:116 final size:116
Alignment explanation
Indices: 36459401--36459642 Score: 423
Period size: 116 Copynumber: 2.1 Consensus size: 116
36459391 CAAAATAATT
* *
36459401 TCAT-ACACATTCTTATCTTTGTCATACCCAATGAACCACTCGAAATAGTAATATCGGATGCTCA
1 TCATAACACATTCTTATCTTTGTCATACCCAATGAACCACTCGAAATAGTAATATCAGATACTCA
*
36459465 GGAAAACCTTGCACATAAGGTGCCACATAGGTAGCCATTGCTACCTCTATC
66 GGAAAACCTTGCACACAAGGTGCCACATAGGTAGCCATTGCTACCTCTATC
* *
36459516 TCATAACACATTCTTATCTTTTTCATACCCAATGAACCACTTGAAATAGTAATATCAGATACTCA
1 TCATAACACATTCTTATCTTTGTCATACCCAATGAACCACTCGAAATAGTAATATCAGATACTCA
*
36459581 GGAAAACCTTGTACACAAGGTGCCACATAGGTAGCCATTGCTACCTCTATC
66 GGAAAACCTTGCACACAAGGTGCCACATAGGTAGCCATTGCTACCTCTATC
36459632 TCATAACACAT
1 TCATAACACAT
36459643 CTATGCTCAC
Statistics
Matches: 120, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
115 4 0.03
116 116 0.97
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.29
Consensus pattern (116 bp):
TCATAACACATTCTTATCTTTGTCATACCCAATGAACCACTCGAAATAGTAATATCAGATACTCA
GGAAAACCTTGCACACAAGGTGCCACATAGGTAGCCATTGCTACCTCTATC
Found at i:36465782 original size:47 final size:44
Alignment explanation
Indices: 36465728--36465851 Score: 151
Period size: 47 Copynumber: 2.8 Consensus size: 44
36465718 TATTATGTGA
*
36465728 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAAAT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GATG---T
* * *
36465775 GCTAGTGTAAGACATGTTTGGGACATGCATCGACTACGAGATGT
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGT
* *
36465819 GCTAGTGTAAGACATTTCTGTGACATGCATCGG
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGG
36465852 GACGAATATG
Statistics
Matches: 68, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
44 30 0.44
47 37 0.54
48 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (44 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGT
Found at i:36465863 original size:44 final size:44
Alignment explanation
Indices: 36465728--36465863 Score: 143
Period size: 44 Copynumber: 3.0 Consensus size: 44
36465718 TATTATGTGA
* *
36465728 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAAAT
1 GCTAGTGTAAGACATTTCTGGGACATGCATCGG-CACGAATATG---T
* *
36465775 GCTAGTGTAAGACATGTT-TGGGACATGCATCGACTACG-AGATGT
1 GCTAGTGTAAGACAT-TTCTGGGACATGCATCGGC-ACGAATATGT
* *
36465819 GCTAGTGTAAGACATTTCTGTGACATGCATCGGGACGAATATGT
1 GCTAGTGTAAGACATTTCTGGGACATGCATCGGCACGAATATGT
36465863 G
1 G
36465864 AATGCCAGTG
Statistics
Matches: 76, Mismatches: 8, Indels: 13
0.78 0.08 0.13
Matches are distributed among these distances:
43 5 0.07
44 35 0.46
46 1 0.01
47 34 0.45
48 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (44 bp):
GCTAGTGTAAGACATTTCTGGGACATGCATCGGCACGAATATGT
Found at i:36470058 original size:40 final size:40
Alignment explanation
Indices: 36470010--36470097 Score: 133
Period size: 40 Copynumber: 2.2 Consensus size: 40
36470000 CGGGATTTAA
* *
36470010 CCGGATATAGCT-ACTTGCTCGAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTTGCACAAATGCCTTCGGGACATAGC
*
36470050 CCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGC
1 CCGGATATAGTAACTTGCACAAATGCCTTCGGGACATAGC
36470090 CCGGATAT
1 CCGGATAT
36470098 CATCCAAATA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
39 1 0.02
40 43 0.98
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTTGCACAAATGCCTTCGGGACATAGC
Found at i:36476094 original size:3 final size:3
Alignment explanation
Indices: 36476088--36476121 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
36476078 TTTTTTTCTC
36476088 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
36476122 TACTAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:36476850 original size:21 final size:22
Alignment explanation
Indices: 36476802--36476850 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
36476792 AACATAAACC
* *
36476802 CTAAACTTTTACCCCTTAACCT
1 CTAAACTCTTACCCCTTAACAT
*
36476824 CT-AACTCTTACCCC-TATCAT
1 CTAAACTCTTACCCCTTAACAT
36476844 CTAAACT
1 CTAAACT
36476851 TTAAACGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 6 0.26
21 15 0.65
22 2 0.09
ACGTcount: A:0.29, C:0.37, G:0.00, T:0.35
Consensus pattern (22 bp):
CTAAACTCTTACCCCTTAACAT
Found at i:36477154 original size:14 final size:15
Alignment explanation
Indices: 36477116--36477175 Score: 70
Period size: 15 Copynumber: 4.1 Consensus size: 15
36477106 ATACCCATGG
*
36477116 CCATTAAACCTTAAA
1 CCATTAAACCCTAAA
*
36477131 CCATAAAACCCTAAA
1 CCATTAAACCCTAAA
*
36477146 CCATT-AACCTTAAA
1 CCATTAAACCCTAAA
*
36477160 -TATTAAACCCTAAA
1 CCATTAAACCCTAAA
36477174 CC
1 CC
36477176 CCAAAATAAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
13 3 0.08
14 16 0.44
15 17 0.47
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (15 bp):
CCATTAAACCCTAAA
Found at i:36477355 original size:38 final size:39
Alignment explanation
Indices: 36477298--36477381 Score: 125
Period size: 38 Copynumber: 2.2 Consensus size: 39
36477288 GGTTTAAGGT
* * *
36477298 TTTAAGGGTTATAGTTTAGTGTTTATGGTTTTTT-AGGG
1 TTTAGGGGTTATAGGTTAGTGTTTATGATTTTTTGAGGG
*
36477336 TTTAGGGGTTATAGGTTAGTGTTTATGATTTTTTGGGGG
1 TTTAGGGGTTATAGGTTAGTGTTTATGATTTTTTGAGGG
36477375 TTTAGGG
1 TTTAGGG
36477382 TTTTAGGGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 31 0.76
39 10 0.24
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (39 bp):
TTTAGGGGTTATAGGTTAGTGTTTATGATTTTTTGAGGG
Found at i:36477477 original size:41 final size:41
Alignment explanation
Indices: 36477400--36477594 Score: 225
Period size: 41 Copynumber: 4.8 Consensus size: 41
36477390 GTTATATGAC
* *
36477400 TTTTAGCGGCGTTTTGACCATAAACGCCGCTATTGCTTTGGT
1 TTTTAGCGGCGTTTT-ACCAAAAACGCCGCTATTGCTCTGGT
*
36477442 TTTTAGCGGCGTTTTACCAAAAACGCCGCCATTGCTCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
* *
36477483 TTTTAGTGGCGTTTTACCAAAAACGTCGCTATTGCTCTAGG-
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCT-GGT
* **** * *
36477524 TTTTAGTGGCGTTTTTGGTAAAACGCCGCTATTTCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
*
36477564 TTTTAGCGGCGTTTTTA-CTAAAACGCCGCTA
1 TTTTAGCGGCG-TTTTACCAAAAACGCCGCTA
36477595 ATGTATAATT
Statistics
Matches: 134, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
40 23 0.17
41 94 0.70
42 17 0.13
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
Found at i:36477606 original size:40 final size:41
Alignment explanation
Indices: 36477400--36477635 Score: 178
Period size: 41 Copynumber: 5.8 Consensus size: 41
36477390 GTTATATGAC
* * * * *
36477400 TTTTAGCGGCGTTTTGACCATAAACGCCGCTATTGCTTTGGT
1 TTTTAGCGGCGTTTTTACTA-AAACGCCGCTAATGCTCTAGT
* * * *
36477442 TTTTAGCGGCG-TTTTACCAAAAACGCCGCCATTGCTCTGGT
1 TTTTAGCGGCGTTTTTA-CTAAAACGCCGCTAATGCTCTAGT
* * * * *
36477483 TTTTAGTGGCG-TTTTACCAAAAACGTCGCTATTGCTCTAGG
1 TTTTAGCGGCGTTTTTA-CTAAAACGCCGCTAATGCTCTAGT
* ** * *
36477524 TTTTAGTGGCGTTTTTGGTAAAACGCCGCTATTTCTCTA-T
1 TTTTAGCGGCGTTTTTACTAAAACGCCGCTAATGCTCTAGT
* *
36477564 TTTTAGCGGCGTTTTTACTAAAACGCCGCTAATG-TATAAT
1 TTTTAGCGGCGTTTTTACTAAAACGCCGCTAATGCTCTAGT
* *
36477604 TTTT-GAGGCATTTTTTGA-TAAAACGCCGCTAA
1 TTTTAGCGGC-GTTTTT-ACTAAAACGCCGCTAA
36477636 AAACGCCACT
Statistics
Matches: 166, Mismatches: 23, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
39 7 0.04
40 53 0.32
41 89 0.54
42 17 0.10
ACGTcount: A:0.22, C:0.20, G:0.21, T:0.38
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTTACTAAAACGCCGCTAATGCTCTAGT
Found at i:36480903 original size:44 final size:45
Alignment explanation
Indices: 36480793--36480916 Score: 148
Period size: 44 Copynumber: 2.8 Consensus size: 45
36480783 GCTATTATGT
* *
36480793 GAGCCAGTGTAAGACATGTCTGGGACATACATCAGCATTGAGACGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATC-GCACTGAGACGA
36480839 GAGCCAGTGTAATG-CATGTCTGGGACATGCATCG-ACT-ACGA-GA
1 GAGCCAGTGTAA-GACATGTCTGGGACATGCATCGCACTGA-GACGA
* *
36480882 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCG
1 -GAGCCAGTGTAAGACATGTCTGGGACATGCATCG
36480917 GCACGAATAT
Statistics
Matches: 70, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
43 4 0.06
44 34 0.49
45 1 0.01
46 30 0.43
47 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGCACTGAGACGA
Found at i:36480929 original size:44 final size:44
Alignment explanation
Indices: 36480798--36480979 Score: 136
Period size: 46 Copynumber: 4.0 Consensus size: 44
36480788 TATGTGAGCC
* * * * * *
36480798 AGTGTAAGACATGTCTGGGACATACATCAGCATTGAGACGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGA--TGTGCT
*
36480844 AGTGTAATG-CATGTCTGGGACATGCATCGAC-TACGAGATGTGCT
1 AGTGTAA-GACATGTCTGGGACATGCATCGGCAT-CGAGATGTGCT
*
36480888 AGTGTAAGACATGTCTGGGACATGCATCGGCA-CGAATATGTGAATGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATCG-AGA--TG--TGCT
* * * *
36480936 AGTGTAAGACCATATCTGGGATATGGCTTCGGCATCGATATGTG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATCGAGATGTG
36480980 TAAGATTTCC
Statistics
Matches: 112, Mismatches: 12, Indels: 24
0.76 0.08 0.16
Matches are distributed among these distances:
43 3 0.03
44 33 0.29
45 1 0.01
46 34 0.30
47 1 0.01
48 15 0.13
49 12 0.11
50 11 0.10
51 2 0.02
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATCGAGATGTGCT
Found at i:36485117 original size:13 final size:13
Alignment explanation
Indices: 36485099--36485125 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
36485089 GGAGCAATCG
36485099 CACACGGGTGTGT
1 CACACGGGTGTGT
36485112 CACACGGGTGTGT
1 CACACGGGTGTGT
36485125 C
1 C
36485126 CTTGTCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACACGGGTGTGT
Found at i:36486437 original size:40 final size:39
Alignment explanation
Indices: 36486339--36486601 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
36486329 TCCTCGTTCA
* * * *
36486339 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
36486378 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
36486417 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
36486457 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
36486497 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
36486537 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
36486578 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
36486602 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:36486561 original size:120 final size:119
Alignment explanation
Indices: 36486339--36486601 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
36486329 TCCTCGTTCA
* * *
36486339 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
36486404 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
36486457 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
36486522 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
36486578 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
36486602 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:36486610 original size:41 final size:41
Alignment explanation
Indices: 36486533--36486610 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
36486523 TTTGTATCTC
* * *
36486533 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
36486574 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
36486611 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:36494327 original size:40 final size:40
Alignment explanation
Indices: 36494279--36494506 Score: 393
Period size: 40 Copynumber: 5.7 Consensus size: 40
36494269 GCAAACACAT
* * *
36494279 TTGCCTTCGGGTCTTAACCCGGACATATCAACTTGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* * *
36494319 TTGCCTTCGGGTCATAGCCCGGATATATTATCTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
36494359 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
36494399 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
36494439 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
36494479 TTGCCTTCGGGTCTTAGCCCGGATATAT
1 TTGCCTTCGGGTCTTAGCCCGGATATAT
36494507 TCCAATGCTC
Statistics
Matches: 179, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:36497343 original size:31 final size:31
Alignment explanation
Indices: 36497271--36497345 Score: 114
Period size: 31 Copynumber: 2.4 Consensus size: 31
36497261 CGGGCTGAGG
*
36497271 ACACGGACGTGTGTGACCACACGGCCTACCC
1 ACACGGGCGTGTGTGACCACACGGCCTACCC
* **
36497302 GCACAAGCGTGTGTGACCACACGGCCTACCC
1 ACACGGGCGTGTGTGACCACACGGCCTACCC
36497333 ACACGGGCGTGTG
1 ACACGGGCGTGTG
36497346 ACCCTGTTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.21, C:0.36, G:0.29, T:0.13
Consensus pattern (31 bp):
ACACGGGCGTGTGTGACCACACGGCCTACCC
Found at i:36499049 original size:12 final size:12
Alignment explanation
Indices: 36499032--36499057 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36499022 AAAATAGGGC
36499032 TTTAGCGGCGTT
1 TTTAGCGGCGTT
36499044 TTTAGCGGCGTT
1 TTTAGCGGCGTT
36499056 TT
1 TT
36499058 ATAAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTAGCGGCGTT
Found at i:36499131 original size:40 final size:40
Alignment explanation
Indices: 36499081--36499248 Score: 167
Period size: 41 Copynumber: 4.1 Consensus size: 40
36499071 AAAAAAATTT
* **
36499081 TAAAATACAGAGCAATAGCGGTG-TTTTAATAAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTGGT-AAAACGCCGC
* * * * **
36499122 TAAAAACAGAGTAACAGCGGTGTTTTTTACTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-CTTTTGGTAAAACGCCGC
* * *
36499163 TAAAACCAGAGCATTAGCAGCGCTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
* *
36499203 TAAAGACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAA-AACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
36499244 TAAAA
1 TAAAA
36499249 GTCATATAGC
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
40 35 0.32
41 70 0.63
42 6 0.05
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:36499212 original size:41 final size:40
Alignment explanation
Indices: 36499152--36499248 Score: 176
Period size: 41 Copynumber: 2.4 Consensus size: 40
36499142 TGTTTTTTAC
36499152 TAAAACGCCGCTAAAACCAGAGCATTAGCAGCGCTTTTGG
1 TAAAACGCCGCTAAAACCAGAGCATTAGCAGCGCTTTTGG
*
36499192 TAAAACGCCGCTAAAGACCAGAGCATTAGCGGCGCTTTTGG
1 TAAAACGCCGCTAAA-ACCAGAGCATTAGCAGCGCTTTTGG
36499233 TAAAACGCCGCTAAAA
1 TAAAACGCCGCTAAAA
36499249 GTCATATAGC
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
40 16 0.29
41 39 0.71
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.19
Consensus pattern (40 bp):
TAAAACGCCGCTAAAACCAGAGCATTAGCAGCGCTTTTGG
Found at i:36500248 original size:21 final size:22
Alignment explanation
Indices: 36500224--36500264 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
36500214 TGTGTTTGTG
36500224 GTCTAAAGTTTAGGG-TTTAGA
1 GTCTAAAGTTTAGGGATTTAGA
* *
36500245 GTCTCAGGTTTAGGGATTTA
1 GTCTAAAGTTTAGGGATTTA
36500265 AATTTAGAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.24, C:0.07, G:0.29, T:0.39
Consensus pattern (22 bp):
GTCTAAAGTTTAGGGATTTAGA
Found at i:36501821 original size:6 final size:6
Alignment explanation
Indices: 36501810--36501835 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
36501800 TTTTATATTA
36501810 TTGGTT TTGGTT TTGGTT TTGGTT TT
1 TTGGTT TTGGTT TTGGTT TTGGTT TT
36501836 AATAAATCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (6 bp):
TTGGTT
Found at i:36504047 original size:9 final size:9
Alignment explanation
Indices: 36504024--36504063 Score: 66
Period size: 8 Copynumber: 4.7 Consensus size: 9
36504014 TCTCCAACCT
36504024 TATTTTAAA
1 TATTTTAAA
36504033 -ATTTTAAA
1 TATTTTAAA
36504041 TATTTTAAA
1 TATTTTAAA
36504050 TA-TTTAAA
1 TATTTTAAA
36504058 TATTTT
1 TATTTT
36504064 GGTTATTTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 16 0.55
9 13 0.45
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (9 bp):
TATTTTAAA
Found at i:36504072 original size:17 final size:17
Alignment explanation
Indices: 36504024--36504063 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
36504014 TCTCCAACCT
36504024 TATTTTAAA-ATTTTAAA
1 TATTTTAAATA-TTTAAA
36504041 TATTTTAAATATTTAAA
1 TATTTTAAATATTTAAA
36504058 TATTTT
1 TATTTT
36504064 GGTTATTTAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
TATTTTAAATATTTAAA
Found at i:36505991 original size:155 final size:155
Alignment explanation
Indices: 36505709--36506529 Score: 1642
Period size: 155 Copynumber: 5.3 Consensus size: 155
36505699 TTAAGGTACG
36505709 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
1 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
36505774 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
66 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
36505839 CGACAATAGCTGACCTCCAACCTTA
131 CGACAATAGCTGACCTCCAACCTTA
36505864 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
1 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
36505929 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
66 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
36505994 CGACAATAGCTGACCTCCAACCTTA
131 CGACAATAGCTGACCTCCAACCTTA
36506019 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
1 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
36506084 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
66 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
36506149 CGACAATAGCTGACCTCCAACCTTA
131 CGACAATAGCTGACCTCCAACCTTA
36506174 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
1 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
36506239 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
66 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
36506304 CGACAATAGCTGACCTCCAACCTTA
131 CGACAATAGCTGACCTCCAACCTTA
36506329 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
1 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
36506394 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
66 GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
36506459 CGACAATAGCTGACCTCCAACCTTA
131 CGACAATAGCTGACCTCCAACCTTA
36506484 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGAC
1 TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGAC
36506530 GGGTTGCCTT
Statistics
Matches: 666, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
155 666 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (155 bp):
TTTTAAATATTTTAAAGATTCAAAGTATATAGGCTGGAAACCTGACCTTATAGTATTAATTATTT
GAAGTATGAATAAGTATGAATTAATTTTATTACCATATATGTAGCTTGCTTGTCCATTATAATTA
CGACAATAGCTGACCTCCAACCTTA
Found at i:36510718 original size:61 final size:61
Alignment explanation
Indices: 36510643--36510764 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
36510633 ACATTTGATA
36510643 GACGAGCCGTATGTATTTTCTTCTCAAGTTAAACAAGTTTTTTACTCGAAAGATCCAATTG
1 GACGAGCCGTATGTATTTTCTTCTCAAGTTAAACAAGTTTTTTACTCGAAAGATCCAATTG
36510704 GACGAGCCGTATGTATTTTCTTCTCAAGTTAAACAAGTTTTTTACTCGAAAGATCCAATTG
1 GACGAGCCGTATGTATTTTCTTCTCAAGTTAAACAAGTTTTTTACTCGAAAGATCCAATTG
36510765 ATGAGGGTTG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.36
Consensus pattern (61 bp):
GACGAGCCGTATGTATTTTCTTCTCAAGTTAAACAAGTTTTTTACTCGAAAGATCCAATTG
Found at i:36511095 original size:63 final size:63
Alignment explanation
Indices: 36511017--36511142 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
36511007 ATTAACATTG
36511017 GTCATGTTATATAATTTAACTATTTTATATTTACTATTGTTGTTATTTCTTACTAAAATTTTA
1 GTCATGTTATATAATTTAACTATTTTATATTTACTATTGTTGTTATTTCTTACTAAAATTTTA
* *
36511080 GTCATGTTATATAATTTACCTATTTTATATTTATTATTGTTGTTATTTCTTACTAAAATTTTA
1 GTCATGTTATATAATTTAACTATTTTATATTTACTATTGTTGTTATTTCTTACTAAAATTTTA
36511143 TCTATTTTAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.29, C:0.08, G:0.06, T:0.56
Consensus pattern (63 bp):
GTCATGTTATATAATTTAACTATTTTATATTTACTATTGTTGTTATTTCTTACTAAAATTTTA
Found at i:36512737 original size:21 final size:21
Alignment explanation
Indices: 36512711--36512758 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
36512701 TCAACTTAGA
36512711 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
36512732 GCGGAGGCAGCAGCGAGGGAG
1 GCGGAGGCAGCAGCGAGGGAG
36512753 GCGGAG
1 GCGGAG
36512759 CAGAACAGGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.23, C:0.19, G:0.58, T:0.00
Consensus pattern (21 bp):
GCGGAGGCAGCAGCGAGGGAG
Found at i:36513118 original size:44 final size:43
Alignment explanation
Indices: 36513060--36513191 Score: 185
Period size: 44 Copynumber: 3.0 Consensus size: 43
36513050 CTGGGCACAC
36513060 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
1 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
* * *
36513103 TTGCGGCGTTTTTTTACAAAAGCGCCGCTAAAAGTACAAGTCTA
1 TAGCGGCG-TTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
* * *
36513147 TAGCGGCATTTTTTATAAAAGCGCCGCT-AAAGTTCCAGGTCTA
1 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAG-TACAGGTCTA
36513190 TA
1 TA
36513192 AAACGCCGCT
Statistics
Matches: 79, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
42 4 0.05
43 36 0.46
44 39 0.49
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (43 bp):
TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTA
Found at i:36513201 original size:27 final size:28
Alignment explanation
Indices: 36513160--36513218 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
36513150 CGGCATTTTT
36513160 TATAAAAGCGCCGCTAAAGTTCCAGGTC
1 TATAAAAGCGCCGCTAAAGTTCCAGGTC
**
36513188 TATAAAA-CGCCGCTAAAGTTCTTGGTC
1 TATAAAAGCGCCGCTAAAGTTCCAGGTC
36513215 TATA
1 TATA
36513219 GCGGTGTTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 22 0.76
28 7 0.24
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (28 bp):
TATAAAAGCGCCGCTAAAGTTCCAGGTC
Found at i:36513280 original size:113 final size:114
Alignment explanation
Indices: 36513097--36513301 Score: 270
Period size: 113 Copynumber: 1.8 Consensus size: 114
36513087 TAAAAGTACA
* * * *
36513097 GGTCTATTGCGGCGTTTTTTTACAAAAGCGCCGCTAAAAGTACAAGTCTATAGCGGCATTTTTTA
1 GGTCTATAGCGGCGTTTTTTTAAAAAAGCGCCGCTAAAAGTACAAGTCTATACCGGCATTTTATA
*
36513162 TAAAAGCGCCGCTAAAGTTCCAGGTCTATAAAACGCCGCTAAAGTTCTT
66 TAAAAGCGCCGCTAAAGGTCCAGGTCTATAAAACGCCGCTAAAGTTCTT
* * * ** * *
36513211 GGTCTATAGCGGTG-TTTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTCTTTACCGGCGCTTTTAT
1 GGTCTATAGCGGCGTTTTTTTAAAAAAGCGCCGCTAAAAGTACAAGTCTATACCGGC-ATTTTAT
*
36513275 A-AAAAGCGCCGCTAAAGGTCCTGGTCT
65 ATAAAAGCGCCGCTAAAGGTCCAGGTCT
36513302 TTACCGGCGC
Statistics
Matches: 77, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
113 59 0.77
114 18 0.23
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.30
Consensus pattern (114 bp):
GGTCTATAGCGGCGTTTTTTTAAAAAAGCGCCGCTAAAAGTACAAGTCTATACCGGCATTTTATA
TAAAAGCGCCGCTAAAGGTCCAGGTCTATAAAACGCCGCTAAAGTTCTT
Found at i:36513345 original size:87 final size:87
Alignment explanation
Indices: 36513188--36513443 Score: 322
Period size: 87 Copynumber: 3.0 Consensus size: 87
36513178 GTTCCAGGTC
* *
36513188 TATAAAA-CGCCGCTAAAGTTCTTGGTCTATAGCGGTG-TTTTTTAAAAAAGCGCCGCTAAAGGT
1 TATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTTTTT-AAAAAGCGCCGCTAAAGGT
*
36513251 CCTGGTCTTTACCGGCGCTTTTA
65 CCTGGTCTTTAACGGCGCTTTTA
* * * * *
36513274 TA-AAAAGCGCCGCTAAAGGTCCTGGTCTTTACCGGCGCTTTTTTATAAAAGCGCGGCTAAAAGT
1 TATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTTTTTA-AAAAGCGCCGCTAAAGGT
* * * * * *
36513338 ACAGGTCTATAGCAGCG-TTTTT
65 CCTGGTCTTTAACGGCGCTTTTA
* *
36513360 TATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTTTATAAAAAACGCCGCTAAAGGTC
1 TATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTTTTTAAAAAGCGCCGCTAAAGGTC
36513425 CTGGTCTTTAACGGCGCTT
66 CTGGTCTTTAACGGCGCTT
36513444 ACAGGTCTAT
Statistics
Matches: 140, Mismatches: 25, Indels: 9
0.80 0.14 0.05
Matches are distributed among these distances:
85 4 0.03
86 61 0.44
87 75 0.54
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (87 bp):
TATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTTTTTAAAAAGCGCCGCTAAAGGTC
CTGGTCTTTAACGGCGCTTTTA
Found at i:36513346 original size:157 final size:157
Alignment explanation
Indices: 36513060--36513348 Score: 386
Period size: 157 Copynumber: 1.8 Consensus size: 157
36513050 CTGGGCACAC
* * *
36513060 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATTGCGGCGTTTTTTTACAAAAG
1 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATTCCGGCGCTTTTATACAAAAG
* *
36513125 CGCCGCTAAAAGTACAAGTCTATAGCGGCATTTTTTATAAAAGCGCCGCTAAAGTTCCAGGTCTA
66 CGCCGCTAAAAGTACAAGTCTATACCGGCATTTTTTATAAAAGCGCCGCTAAAGTTACAGGTCTA
36513190 TAAAACGCCGCTAAAGTTCTTGGTCTA
131 TAAAACGCCGCTAAAGTTCTTGGTCTA
* * * *
36513217 TAGCGGTGTTTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTCT-TTACCGGCGCTTTTATA-AAAA
1 TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATT-CCGGCGCTTTTATACAAAA
* * ** * * *
36513280 GCGCCGCTAAAGGTCCTGGTCTTTACCGGCGCTTTTTTATAAAAGCGCGGCTAAAAG-TACAGGT
65 GCGCCGCTAAAAGTACAAGTCTATACCGGC-ATTTTTTATAAAAGCGCCGCT-AAAGTTACAGGT
36513344 CTATA
128 CTATA
36513349 GCAGCGTTTT
Statistics
Matches: 113, Mismatches: 16, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
156 30 0.27
157 79 0.70
158 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (157 bp):
TAGCGGCGTTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATTCCGGCGCTTTTATACAAAAG
CGCCGCTAAAAGTACAAGTCTATACCGGCATTTTTTATAAAAGCGCCGCTAAAGTTACAGGTCTA
TAAAACGCCGCTAAAGTTCTTGGTCTA
Found at i:36513441 original size:43 final size:43
Alignment explanation
Indices: 36513191--36513443 Score: 285
Period size: 43 Copynumber: 5.9 Consensus size: 43
36513181 CCAGGTCTAT
* * *
36513191 AAAACGCCGCTAAAGTTCTTGGTCTATAGCGGTG-TTTTTTAA
1 AAAACGCCGCTAAAGGTCCTGGTCTATAGCGGCGCTTTTTTAA
* * *
36513233 AAAAGCGCCGCTAAAGGTCCTGGTCTTTACCGGCGCTTTTATAA
1 AAAA-CGCCGCTAAAGGTCCTGGTCTATAGCGGCGCTTTTTTAA
* * *
36513277 AAAGCGCCGCTAAAGGTCCTGGTCTTTACCGGCGCTTTTTTATA
1 AAAACGCCGCTAAAGGTCCTGGTCTATAGCGGCGCTTTTTTA-A
* * * * * *
36513321 AAAGCGCGGCTAAAAGTACAGGTCTATAGCAGCG-TTTTTTATA
1 AAAACGCCGCTAAAGGTCCTGGTCTATAGCGGCGCTTTTTTA-A
* * *
36513364 AAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTTTATAA
1 AAAACGCCGCTAAAGGTCCTGGTCTATAGCGGCGCTTTTTTAA
* *
36513407 AAAACGCCGCTAAAGGTCCTGGTCTTTAACGGCGCTT
1 AAAACGCCGCTAAAGGTCCTGGTCTATAGCGGCGCTT
36513444 ACAGGTCTAT
Statistics
Matches: 181, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
42 4 0.02
43 133 0.73
44 44 0.24
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (43 bp):
AAAACGCCGCTAAAGGTCCTGGTCTATAGCGGCGCTTTTTTAA
Found at i:36513483 original size:63 final size:63
Alignment explanation
Indices: 36513384--36513506 Score: 176
Period size: 63 Copynumber: 2.0 Consensus size: 63
36513374 TAAAGTTCCT
* *
36513384 GGTCTATAGCGGCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAACGGCGCTTACA
1 GGTCTATAGCAGCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTATAACGGCGCTTACA
* * * *
36513447 GGTCTATAGCAGCG-TTTTTTATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTT
1 GGTCTATAGCAGCGCTTTTATA-AAAAACGCCGCTAAAGGTCCTGGTCTATAACGGCGCTT
36513507 TTATAAAAAA
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
62 6 0.11
63 47 0.89
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (63 bp):
GGTCTATAGCAGCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTATAACGGCGCTTACA
Found at i:36513514 original size:42 final size:43
Alignment explanation
Indices: 36513447--36513636 Score: 206
Period size: 43 Copynumber: 4.4 Consensus size: 43
36513437 GGCGCTTACA
* * *
36513447 GGTCTATAGCAGCGTTTTT-TATAAAAGCGCCGCTAAAGTTCCT
1 GGTCTATAGCGGCGTTTTTATA-AAAAACGCCGCTAAAGGTCCT
*
36513490 GGTCTATAGCGGCGCTTTTATAAAAAACGCCGCTAAAGGTCCT
1 GGTCTATAGCGGCGTTTTTATAAAAAACGCCGCTAAAGGTCCT
* * * * *
36513533 GGTCTTTGGCGGCGTTTTT-TTAAGAGCGCCGCTAAAGGTCCT
1 GGTCTATAGCGGCGTTTTTATAAAAAACGCCGCTAAAGGTCCT
* * * * * *
36513575 GGTCTTTAGCGACGCTTTTATAAAAAATGCCGCTAAAGATCGT
1 GGTCTATAGCGGCGTTTTTATAAAAAACGCCGCTAAAGGTCCT
36513618 GGTCCT-TAGCGGCGTTTTT
1 GGT-CTATAGCGGCGTTTTT
36513637 TTCTAAAAAA
Statistics
Matches: 123, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
42 36 0.29
43 83 0.67
44 4 0.03
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.32
Consensus pattern (43 bp):
GGTCTATAGCGGCGTTTTTATAAAAAACGCCGCTAAAGGTCCT
Found at i:36513546 original size:106 final size:106
Alignment explanation
Indices: 36513337--36513539 Score: 406
Period size: 106 Copynumber: 1.9 Consensus size: 106
36513327 CGGCTAAAAG
36513337 TACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTT
1 TACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTT
36513402 TATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAACGGCGCT
66 TATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAACGGCGCT
36513443 TACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTT
1 TACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTT
36513508 TATAAAAAACGCCGCTAAAGGTCCTGGTCTTT
66 TATAAAAAACGCCGCTAAAGGTCCTGGTCTTT
36513540 GGCGGCGTTT
Statistics
Matches: 97, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
106 97 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (106 bp):
TACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTT
TATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAACGGCGCT
Found at i:36513591 original size:85 final size:85
Alignment explanation
Indices: 36513453--36513638 Score: 273
Period size: 85 Copynumber: 2.2 Consensus size: 85
36513443 TACAGGTCTA
* * *
36513453 TAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTTTATAAAAAAC
1 TAGCGGCGTTTTTT-TAAAAGCGCCGCTAAAGGTCCTGGTCTATAGCGACGCTTTTATAAAAAAC
* *
36513518 GCCGCTAAAGGTCCTGGTCTT
65 GCCGCTAAAGATCCTGGTCCT
* * * *
36513539 TGGCGGCGTTTTTTTAAGAGCGCCGCTAAAGGTCCTGGTCTTTAGCGACGCTTTTATAAAAAATG
1 TAGCGGCGTTTTTTTAAAAGCGCCGCTAAAGGTCCTGGTCTATAGCGACGCTTTTATAAAAAACG
*
36513604 CCGCTAAAGATCGTGGTCCT
66 CCGCTAAAGATCCTGGTCCT
36513624 TAGCGGCGTTTTTTT
1 TAGCGGCGTTTTTTT
36513639 CTAAAAAATG
Statistics
Matches: 89, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
85 77 0.87
86 12 0.13
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (85 bp):
TAGCGGCGTTTTTTTAAAAGCGCCGCTAAAGGTCCTGGTCTATAGCGACGCTTTTATAAAAAACG
CCGCTAAAGATCCTGGTCCT
Found at i:36513609 original size:191 final size:194
Alignment explanation
Indices: 36513269--36513631 Score: 516
Period size: 191 Copynumber: 1.9 Consensus size: 194
36513259 TTACCGGCGC
* * * *
36513269 TTTTATAAAAAGCGCCGCTAAAGGTCCTGGTCTTTACCGGCGCTTTTTTATAAAAGCGCGGCTAA
1 TTTTATAAAAAGCGCCGCTAAAGGTCCTGGTCTATACCGGCGCTTTTATATAAAAACGCCGCTAA
* *
36513334 AAGTACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGC
66 AAGTACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTATAGCGACGC
* *
36513399 TTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAACGGCGCTTACAGGTCTATAGCAGCGTT
131 TTTTATAAAAAACGCCGCTAAAGATCCTGGTCCTTAACGGCGCTTACAGGTCTATAGCAGCGTT
* *
36513463 TTTTAT-AAAAGCGCCGCTAAAGTTCCTGGTCTATAGCGGCGCTTTTATA-AAAAACGCCGCTAA
1 TTTTATAAAAAGCGCCGCTAAAGGTCCTGGTCTATACCGGCGCTTTTATATAAAAACGCCGCTAA
* * * * * * * *
36513526 AGGTCCTGGTCTTTGGCGGCGTTTTTT-TAAGAGCGCCGCTAAAGGTCCTGGTCTTTAGCGACGC
66 AAGTACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTATAGCGACGC
* * *
36513590 TTTTATAAAAAATGCCGCTAAAGATCGTGGTCCTTAGCGGCG
131 TTTTATAAAAAACGCCGCTAAAGATCCTGGTCCTTAACGGCG
36513632 TTTTTTTCTA
Statistics
Matches: 148, Mismatches: 21, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
191 70 0.47
192 33 0.22
193 39 0.26
194 6 0.04
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (194 bp):
TTTTATAAAAAGCGCCGCTAAAGGTCCTGGTCTATACCGGCGCTTTTATATAAAAACGCCGCTAA
AAGTACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGGTCCTGGTCTATAGCGACGC
TTTTATAAAAAACGCCGCTAAAGATCCTGGTCCTTAACGGCGCTTACAGGTCTATAGCAGCGTT
Found at i:36513646 original size:236 final size:236
Alignment explanation
Indices: 36513063--36513636 Score: 626
Period size: 236 Copynumber: 2.4 Consensus size: 236
36513053 GGCACACTAG
* * * *
36513063 CGGCG-TTTTTTAAAAAAGCGCCGCTAAAAGTACAGGTCTATTGCGGCGTTTT-TTTACAAAAGC
1 CGGCGCTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTATAGCAGCGTTTTATATA-AAAA-C
* ** * * * * *
36513126 GCCGCTAAA-AGTACAAGTCTATAGCGGC-ATTTTTTATAAAAGCGCCGCTAAAGTTCCAGGTCT
64 GCCGCTAAAGA-TCCTGGTCTATAGCGGCGCTTTTATA-AAAAACGCCGCTAAAGGTCCTGGTCT
* * * * * *
36513189 ATAAAACGCCGCTAAAGTTCTTGGTCTATAGCGGTGTTTTTTAAAAAAGCGCCGCTAAAGGTCCT
127 -T-TAACGGCGCT----TAC-AGGTCTATAGCAGCGTTTTTTAAAAAAGCGCCGCTAAAGGTCCT
* *
36513254 GGTCTTTACCGGCGCTTTTATAAAAAGCGCCGCTAAAGGTCCTGGTCTTTAC
185 GGTCTATACCGGCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAC
* * *
36513306 CGGCGCTTTTTTATAAAAGCGCGGCTAAAAGTACAGGTCTATAGCAGCGTTTTTTATAAAAGCGC
1 CGGCGCTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTATAGCAGCGTTTTATATAAAAACGC
*
36513371 CGCTAAAGTTCCTGGTCTATAGCGGCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAA
66 CGCTAAAGATCCTGGTCTATAGCGGCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAA
* * *
36513436 CGGCGCTTACAGGTCTATAGCAGCGTTTTTTATAAAAGCGCCGCTAAAGTTCCTGGTCTATAGCG
131 CGGCGCTTACAGGTCTATAGCAGCGTTTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTCTATACCG
**
36513501 GCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTTTGG
196 GCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAC
* * * * * *
36513542 CGGCG-TTTTTT-TAAGAGCGCCGCTAAAGGTCCTGGTCTTTAGC-GACGCTTTTATA-AAAAAT
1 CGGCGCTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTATAGCAG-CG-TTTTATATAAAAAC
* *
36513603 GCCGCTAAAGATCGTGGTCCT-TAGCGGCGTTTTT
64 GCCGCTAAAGATCCTGGT-CTATAGCGGCGCTTTT
36513637 TTCTAAAAAA
Statistics
Matches: 284, Mismatches: 40, Indels: 23
0.82 0.12 0.07
Matches are distributed among these distances:
233 1 0.00
234 60 0.21
235 14 0.05
236 91 0.32
237 2 0.01
241 8 0.03
242 1 0.00
243 52 0.18
244 52 0.18
245 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (236 bp):
CGGCGCTTTTTTATAAAAGCGCCGCTAAAAGTACAGGTCTATAGCAGCGTTTTATATAAAAACGC
CGCTAAAGATCCTGGTCTATAGCGGCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAA
CGGCGCTTACAGGTCTATAGCAGCGTTTTTTAAAAAAGCGCCGCTAAAGGTCCTGGTCTATACCG
GCGCTTTTATAAAAAACGCCGCTAAAGGTCCTGGTCTTTAC
Found at i:36515030 original size:20 final size:20
Alignment explanation
Indices: 36515005--36515043 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
36514995 CCGTGTATTC
36515005 ATTTGTTGCAATGTAAAAAT
1 ATTTGTTGCAATGTAAAAAT
36515025 ATTTGTTGCAATGTAAAAA
1 ATTTGTTGCAATGTAAAAA
36515044 CTTGAATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (20 bp):
ATTTGTTGCAATGTAAAAAT
Found at i:36520198 original size:29 final size:29
Alignment explanation
Indices: 36520132--36520256 Score: 114
Period size: 29 Copynumber: 4.3 Consensus size: 29
36520122 TAGATACATG
* *
36520132 CATATGGCCCACT-GGGCCCAA-TCTTATT
1 CATATGGCCCA-TATGGCCCAATTCATATT
*
36520160 CATATGGCCCATATGGCCCAGTTCATATT
1 CATATGGCCCATATGGCCCAATTCATATT
* * *
36520189 CTTATGGCCCACTA-GGCCAAATTCACATT
1 CATATGGCCCA-TATGGCCCAATTCATATT
* *
36520218 CATATGGCCCAT-TAGGCCCAAATCACATT
1 CATATGGCCCATAT-GGCCCAATTCATATT
*
36520247 TATATGGCCC
1 CATATGGCCC
36520257 GTTAGGAAAA
Statistics
Matches: 81, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.01
28 18 0.22
29 60 0.74
30 2 0.02
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (29 bp):
CATATGGCCCATATGGCCCAATTCATATT
Found at i:36520253 original size:58 final size:58
Alignment explanation
Indices: 36520133--36520256 Score: 146
Period size: 58 Copynumber: 2.2 Consensus size: 58
36520123 AGATACATGC
* * ** ** *
36520133 ATATGGCCCACTGGGCCCAATCTTATTCATATGGCCCATATGGCCCAGTTCATATTCT
1 ATATGGCCCACTAGGCCAAATCACATTCATATGGCCCATATGGCCCAAATCACATTCT
36520191 -TATGGCCCACTAGGCCAAATTCACATTCATATGGCCCAT-TAGGCCCAAATCACATT-T
1 ATATGGCCCACTAGGCCAAA-TCACATTCATATGGCCCATAT-GGCCCAAATCACATTCT
36520248 ATATGGCCC
1 ATATGGCCC
36520257 GTTAGGAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
57 19 0.34
58 37 0.66
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.28
Consensus pattern (58 bp):
ATATGGCCCACTAGGCCAAATCACATTCATATGGCCCATATGGCCCAAATCACATTCT
Found at i:36520261 original size:29 final size:29
Alignment explanation
Indices: 36520157--36520262 Score: 117
Period size: 29 Copynumber: 3.7 Consensus size: 29
36520147 GCCCAATCTT
* * *
36520157 ATTCATATGGCCCA-TATGGCCCAGTTCAT
1 ATTCATATGGCCCATTA-GGCCAAATTCAC
* *
36520186 ATTCTTATGGCCCACTAGGCCAAATTCAC
1 ATTCATATGGCCCATTAGGCCAAATTCAC
36520215 ATTCATATGGCCCATTAGGCCCAAA-TCAC
1 ATTCATATGGCCCATTAGG-CCAAATTCAC
* *
36520244 ATTTATATGGCCCGTTAGG
1 ATTCATATGGCCCATTAGG
36520263 AAAAATTTTC
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
29 60 0.90
30 7 0.10
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (29 bp):
ATTCATATGGCCCATTAGGCCAAATTCAC
Found at i:36520269 original size:58 final size:58
Alignment explanation
Indices: 36520157--36520269 Score: 131
Period size: 58 Copynumber: 1.9 Consensus size: 58
36520147 GCCCAATCTT
** * **
36520157 ATTCATATGGCCCATATGGCCCAGTTCATATTCTTATGGCCCACTAGGCCAAATTCAC
1 ATTCATATGGCCCATATGGCCCAAATCACATTCTTATGGCCCACTAGGAAAAATTCAC
**
36520215 ATTCATATGGCCCAT-TAGGCCCAAATCACATT-TATATGGCCCGTTAGGAAAAATT
1 ATTCATATGGCCCATAT-GGCCCAAATCACATTCT-TATGGCCCACTAGGAAAAATT
36520270 TTCTAACACA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
57 2 0.04
58 44 0.96
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (58 bp):
ATTCATATGGCCCATATGGCCCAAATCACATTCTTATGGCCCACTAGGAAAAATTCAC
Found at i:36527508 original size:28 final size:28
Alignment explanation
Indices: 36527468--36527532 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36527458 ATGTACTAGA
*
36527468 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
36527496 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36527524 ATACCCCTA
1 ATACCCCTA
36527533 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36527696 original size:27 final size:27
Alignment explanation
Indices: 36527638--36527727 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
36527628 AGGAAGCGTC
36527638 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
36527666 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
36527693 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
36527722 CTGGTG
1 CTGGTG
36527728 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:36527746 original size:55 final size:56
Alignment explanation
Indices: 36527638--36527752 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
36527628 AGGAAGCGTC
* *
36527638 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
36527693 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
36527749 CTGG
1 CTGG
36527753 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:36528220 original size:18 final size:18
Alignment explanation
Indices: 36528181--36528221 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
36528171 TAATAAAGCC
* *
36528181 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
36528199 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
36528217 TTTTA
1 TTTTA
36528222 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:36528845 original size:11 final size:10
Alignment explanation
Indices: 36528817--36528850 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
36528807 AGCCTGTAAG
36528817 TATTCTGAAT
1 TATTCTGAAT
*
36528827 TTTTCTGAAT
1 TATTCTGAAT
36528837 ATATTCTGAAT
1 -TATTCTGAAT
36528848 TAT
1 TAT
36528851 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:36528907 original size:25 final size:25
Alignment explanation
Indices: 36528879--36528930 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
36528869 TACTAGAATA
36528879 CTCTAGATAGGATGCTACTAAAACC
1 CTCTAGATAGGATGCTACTAAAACC
*
36528904 CTCTAGATAGGATGCTACTGAAACC
1 CTCTAGATAGGATGCTACTAAAACC
36528929 CT
1 CT
36528931 AGAAAAGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
CTCTAGATAGGATGCTACTAAAACC
Found at i:36540335 original size:28 final size:28
Alignment explanation
Indices: 36540303--36540367 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36540293 ATTTACTAGA
*
36540303 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
36540331 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36540359 ATACCCCTA
1 ATACCCCTA
36540368 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36540531 original size:27 final size:27
Alignment explanation
Indices: 36540473--36540562 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
36540463 AGGAAGCGTC
36540473 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
36540501 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
36540528 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
36540557 CTGGTG
1 CTGGTG
36540563 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:36540581 original size:55 final size:56
Alignment explanation
Indices: 36540473--36540587 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
36540463 AGGAAGCGTC
* *
36540473 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
36540528 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
36540584 CTGG
1 CTGG
36540588 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:36541055 original size:18 final size:18
Alignment explanation
Indices: 36541016--36541056 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
36541006 TAATAAGGCC
* *
36541016 TTTTAATTATTTTTATGG
1 TTTTAATTACTTTTATGA
*
36541034 TTTTAATTACTTTTATTA
1 TTTTAATTACTTTTATGA
36541052 TTTTA
1 TTTTA
36541057 TTTTACTATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.05, T:0.68
Consensus pattern (18 bp):
TTTTAATTACTTTTATGA
Found at i:36542170 original size:29 final size:29
Alignment explanation
Indices: 36542120--36542253 Score: 118
Period size: 29 Copynumber: 4.7 Consensus size: 29
36542110 TGGCCCACTA
*
36542120 GGCCCAA-TCTCATTCATATGGCCTATAT
1 GGCCCAATTCACATTCATATGGCCTATAT
* * * *
36542148 GGCCCAGTTCATATTCTTATGGCCCACTA-
1 GGCCCAATTCACATTCATATGGCCTA-TAT
*
36542177 GGCCAAATTCACATTCATATGGCCTAT-T
1 GGCCCAATTCACATTCATATGGCCTATAT
* *
36542205 AGGCCCAAATCACATTTATATGGCCCGT-TA-
1 -GGCCCAATTCACATTCATATGG-CC-TATAT
36542235 GGCCCAA-TCACATTCATAT
1 GGCCCAATTCACATTCATAT
36542254 TCATGCTCAC
Statistics
Matches: 85, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
28 18 0.21
29 61 0.72
30 5 0.06
31 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (29 bp):
GGCCCAATTCACATTCATATGGCCTATAT
Found at i:36542202 original size:58 final size:57
Alignment explanation
Indices: 36542109--36542253 Score: 186
Period size: 58 Copynumber: 2.5 Consensus size: 57
36542099 ATAAATGCAA
* ** *
36542109 ATGGCCCACTAGGCCCAATCTCATTCATATGGCCTA-TATGGCCCAGTTCATATTCT-T
1 ATGGCCCACTAGGCCCAATCACATTCATATGGCCTATTA-GGCCCAAATCACATT-TAT
*
36542166 ATGGCCCACTAGGCCAAATTCACATTCATATGGCCTATTAGGCCCAAATCACATTTAT
1 ATGGCCCACTAGGCCCAA-TCACATTCATATGGCCTATTAGGCCCAAATCACATTTAT
**
36542224 ATGGCCCGTTAGGCCCAATCACATTCATAT
1 ATGGCCCACTAGGCCCAATCACATTCATAT
36542254 TCATGCTCAC
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
57 30 0.39
58 45 0.58
59 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (57 bp):
ATGGCCCACTAGGCCCAATCACATTCATATGGCCTATTAGGCCCAAATCACATTTAT
Found at i:36557405 original size:47 final size:46
Alignment explanation
Indices: 36557351--36557531 Score: 165
Period size: 47 Copynumber: 3.9 Consensus size: 46
36557341 TATGTGAGCC
36557351 AGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAAATGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-TATG-AATGCT
* * * *
36557398 AGTGTAAGACATGTTTGGGACATGCATCGACTACGAGATG--TGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATATGAATGCT
* * *
36557442 ACTGTAAGACATGTCTGCGACATGCATCGG-CACGAATATGTGAATGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACG-ATA--TGAATGCT
* * *
36557490 AGTGTAAGGCCATATCTGGGATATGGCATCGG-CATCGATATG
1 AGTGTAA-GACATGTCTGGGACAT-GCATCGGCCA-CGATATG
36557532 TAAGATTTCC
Statistics
Matches: 109, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
43 3 0.03
44 32 0.29
46 2 0.02
47 34 0.31
48 12 0.11
49 12 0.11
50 12 0.11
51 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGATATGAATGCT
Found at i:36557483 original size:44 final size:44
Alignment explanation
Indices: 36557353--36557483 Score: 149
Period size: 44 Copynumber: 2.9 Consensus size: 44
36557343 TGTGAGCCAG
* *
36557353 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATTATGAAATGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGG-CACGAATATG---TGCTAC
* * *
36557400 TGTAAGACATGTTTGGGACATGCATCGACTACG-AGATGTGCTAC
1 TGTAAGACATGTCTGGGACATGCATCGGC-ACGAATATGTGCTAC
*
36557444 TGTAAGACATGTCTGCGACATGCATCGGCACGAATATGTG
1 TGTAAGACATGTCTGGGACATGCATCGGCACGAATATGTG
36557484 AATGCCAGTG
Statistics
Matches: 72, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
43 3 0.04
44 37 0.51
46 1 0.01
47 31 0.43
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (44 bp):
TGTAAGACATGTCTGGGACATGCATCGGCACGAATATGTGCTAC
Found at i:36564561 original size:3 final size:3
Alignment explanation
Indices: 36564555--36564580 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36564545 TTTTTCTCTT
36564555 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
36564581 TACTAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:36565598 original size:15 final size:15
Alignment explanation
Indices: 36565575--36565608 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
36565565 ATACCCATGG
* *
36565575 CCATTAAACCTTAAA
1 CCATAAAACCCTAAA
36565590 CCATAAAACCCTAAA
1 CCATAAAACCCTAAA
36565605 CCAT
1 CCAT
36565609 TGACCTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (15 bp):
CCATAAAACCCTAAA
Found at i:36565947 original size:41 final size:41
Alignment explanation
Indices: 36565860--36566054 Score: 232
Period size: 41 Copynumber: 4.8 Consensus size: 41
36565850 GTTATATGAC
* *
36565860 TTTTAGCGGCGTTTTGACCATAAACGCCGCTATTGCTTTGGT
1 TTTTAGCGGCGTTTT-ACCAAAAACGCCGCTATTGCTCTGGT
* *
36565902 TTTTAGCGGCGTTTTACCAAAAACGTCGTTATTGCTCTAGG-
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCT-GGT
*
36565943 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCCCTGGT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
**** * * *
36565984 TTTTAGCGGCGTTTTTGGTAAAACGCTGCTATTTCTCT-AT
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
**
36566024 TTTTAGCGGCGTTTTAGTAAAAACGCCGCTA
1 TTTTAGCGGCGTTTTACCAAAAACGCCGCTA
36566055 ATGTATAATT
Statistics
Matches: 132, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
40 30 0.23
41 85 0.64
42 17 0.13
ACGTcount: A:0.20, C:0.21, G:0.22, T:0.37
Consensus pattern (41 bp):
TTTTAGCGGCGTTTTACCAAAAACGCCGCTATTGCTCTGGT
Found at i:36566706 original size:15 final size:15
Alignment explanation
Indices: 36566667--36566706 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
36566657 GTATTGTGAT
* *
36566667 TTGGATTTTCTTGTC
1 TTGGATTTTTTTATC
*
36566682 TTGGATTTTTTTATG
1 TTGGATTTTTTTATC
36566697 TTGGATTTTT
1 TTGGATTTTT
36566707 ATATTCTAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.10, C:0.05, G:0.20, T:0.65
Consensus pattern (15 bp):
TTGGATTTTTTTATC
Found at i:36569324 original size:46 final size:44
Alignment explanation
Indices: 36569256--36569386 Score: 169
Period size: 44 Copynumber: 3.0 Consensus size: 44
36569246 TGCTATTATG
*
36569256 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCAGCATTGA-GACGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATC-G-ACT-ACGA-GA
*
36569303 -GAGCCAGTGTAAGGCATGTCTGGGACATGCATCGACTACGAGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGA
* *
36569346 TGTGCTAGTGTAAGACATGTCTGGGACATGCATCGAC-ACGA
1 TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGA
36569387 ATATGTGAAT
Statistics
Matches: 77, Mismatches: 5, Indels: 8
0.86 0.06 0.09
Matches are distributed among these distances:
43 7 0.09
44 37 0.48
45 1 0.01
46 32 0.42
ACGTcount: A:0.28, C:0.20, G:0.31, T:0.21
Consensus pattern (44 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGCATCGACTACGAGA
Found at i:36569393 original size:44 final size:44
Alignment explanation
Indices: 36569259--36569420 Score: 159
Period size: 44 Copynumber: 3.5 Consensus size: 44
36569249 TATTATGTGA
* *
36569259 GCCAGTGTAAGACATGTCTGGGACATGCATC-AGCATTGAGACGA-GA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGA-CA-CGA-A-GATGT
*
36569305 GCCAGTGTAAGGCATGTCTGGGACATGCATCGACTACG-AGATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGAC-ACGAAGATGT
* *
36569349 GCTAGTGTAAGACATGTCTGGGACATGCATCGACACGAATATGTGAAT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGACACGAAGA--TG--T
*
36569397 GCCAGTGTAAGACCATATCTGGGA
1 GCCAGTGTAAGA-CATGTCTGGGA
36569421 TATGGCTTCG
Statistics
Matches: 99, Mismatches: 8, Indels: 15
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.05
44 36 0.36
46 34 0.34
47 2 0.02
48 12 0.12
49 10 0.10
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGACACGAAGATGT
Found at i:36571800 original size:31 final size:31
Alignment explanation
Indices: 36571765--36571834 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
36571755 TGAGGACACG
36571765 GGCGTGTGTGACCACACGGCCTACCCGCACA
1 GGCGTGTGTGACCACACGGCCTACCCGCACA
*
36571796 GGCGTGTGTGACCACACGGCCTACCCGCACG
1 GGCGTGTGTGACCACACGGCCTACCCGCACA
36571827 GGCGTGTG
1 GGCGTGTG
36571835 ACCCTGTTTC
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.16, C:0.36, G:0.34, T:0.14
Consensus pattern (31 bp):
GGCGTGTGTGACCACACGGCCTACCCGCACA
Found at i:36574746 original size:20 final size:20
Alignment explanation
Indices: 36574721--36574759 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
36574711 CCGTGTATTC
36574721 ATTTGTTGCAATGTAAAAAT
1 ATTTGTTGCAATGTAAAAAT
36574741 ATTTGTTGCAATGTAAAAA
1 ATTTGTTGCAATGTAAAAA
36574760 CTTGAATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.05, G:0.15, T:0.38
Consensus pattern (20 bp):
ATTTGTTGCAATGTAAAAAT
Found at i:36575850 original size:18 final size:18
Alignment explanation
Indices: 36575827--36575876 Score: 100
Period size: 18 Copynumber: 2.8 Consensus size: 18
36575817 TTGGAGAGTT
36575827 ACACGCCCGTGTGGTCAC
1 ACACGCCCGTGTGGTCAC
36575845 ACACGCCCGTGTGGTCAC
1 ACACGCCCGTGTGGTCAC
36575863 ACACGCCCGTGTGG
1 ACACGCCCGTGTGG
36575877 CTCAGGACTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.16, C:0.38, G:0.30, T:0.16
Consensus pattern (18 bp):
ACACGCCCGTGTGGTCAC
Found at i:36579887 original size:28 final size:28
Alignment explanation
Indices: 36579851--36580003 Score: 173
Period size: 29 Copynumber: 5.4 Consensus size: 28
36579841 ACCCCTAGAT
* *
36579851 ACATGCATATGGCCCACTGGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
*
36579879 TCATTCATATGGCCCA-TATGGCCCAATTC
1 ACATTCATATGGCCCACTA-GGCCCAA-TC
* * *
36579908 ATATTCTTATGGCCCACTAGGCCAAATTC
1 ACATTCATATGGCCCACTAGGCCCAA-TC
*
36579937 ACATTCATATGGCCCATTAGGCCCAAATC
1 ACATTCATATGGCCCACTAGGCCC-AATC
* **
36579966 ACATTTATATGGCCCGTTAGGCCCAATC
1 ACATTCATATGGCCCACTAGGCCCAATC
36579994 ACATTCATAT
1 ACATTCATAT
36580004 TCATGCTCAC
Statistics
Matches: 107, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.01
28 34 0.32
29 68 0.64
30 4 0.04
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.27
Consensus pattern (28 bp):
ACATTCATATGGCCCACTAGGCCCAATC
Found at i:36589030 original size:114 final size:114
Alignment explanation
Indices: 36588844--36589071 Score: 447
Period size: 114 Copynumber: 2.0 Consensus size: 114
36588834 TTAAAAACGG
*
36588844 GGCTTGGAATCACTTACTATAAAGCTTGAAAGTTGAAGAAACCCCAGCTATGGAGAGAGGTATGG
1 GGCTTGGAATCACTTACTATAAAGCTTGAAAGTTGAAGAAACCCCAGCTATGGAGAGAGGTAAGG
36588909 TTCGGCTGGTAACTTGAAGAAGATGATACAATTTTATCATCTTTTTACC
66 TTCGGCTGGTAACTTGAAGAAGATGATACAATTTTATCATCTTTTTACC
36588958 GGCTTGGAATCACTTACTATAAAGCTTGAAAGTTGAAGAAACCCCAGCTATGGAGAGAGGTAAGG
1 GGCTTGGAATCACTTACTATAAAGCTTGAAAGTTGAAGAAACCCCAGCTATGGAGAGAGGTAAGG
36589023 TTCGGCTGGTAACTTGAAGAAGATGATACAATTTTATCATCTTTTTACC
66 TTCGGCTGGTAACTTGAAGAAGATGATACAATTTTATCATCTTTTTACC
36589072 TTTTTATTAA
Statistics
Matches: 113, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
114 113 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (114 bp):
GGCTTGGAATCACTTACTATAAAGCTTGAAAGTTGAAGAAACCCCAGCTATGGAGAGAGGTAAGG
TTCGGCTGGTAACTTGAAGAAGATGATACAATTTTATCATCTTTTTACC
Found at i:36597530 original size:39 final size:39
Alignment explanation
Indices: 36597477--36597600 Score: 158
Period size: 39 Copynumber: 3.2 Consensus size: 39
36597467 GGATTTTAGC
* * ** *
36597477 CCGGACATATTTCCAGCATGTAGCCTGCAGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* * *
36597516 CCGGTTATAATTCCAGCACATAGCCTACGGACTTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
* *
36597555 CCAGATATAATTCCAGCACATAGCCTGCGGACCCTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
36597594 CCGGATA
1 CCGGATA
36597601 AATATCACTG
Statistics
Matches: 71, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 71 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:36605325 original size:22 final size:22
Alignment explanation
Indices: 36605295--36605337 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36605285 AACTTACTAT
* *
36605295 TTTCTGCTCACTAGAGCTTACC
1 TTTCAGCTCAATAGAGCTTACC
36605317 TTTCAGCTCAATAGAGCTTAC
1 TTTCAGCTCAATAGAGCTTAC
36605338 TGTCTATCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.23, C:0.28, G:0.14, T:0.35
Consensus pattern (22 bp):
TTTCAGCTCAATAGAGCTTACC
Found at i:36611692 original size:34 final size:34
Alignment explanation
Indices: 36611654--36611721 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
36611644 ATCCCATATG
* *
36611654 TCCATCGAAATTCATCATTCAAACGGAACTTAAC
1 TCCATCGAAATTCACCATTCAAACAGAACTTAAC
* *
36611688 TCCATTGAAATTCACCATTCAAATAGAACTTAAC
1 TCCATCGAAATTCACCATTCAAACAGAACTTAAC
36611722 ATTTTCCAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.40, C:0.25, G:0.07, T:0.28
Consensus pattern (34 bp):
TCCATCGAAATTCACCATTCAAACAGAACTTAAC
Found at i:36613667 original size:46 final size:45
Alignment explanation
Indices: 36613617--36613758 Score: 132
Period size: 43 Copynumber: 3.1 Consensus size: 45
36613607 ACATGTCTAA
*
36613617 GACATGCATCGGCCTCGAGACGTAAGCCACTGTAAGA-CATGTTTGG
1 GACATGCATCGGCCTCGAGATGTAAG-CA-TGTAAGACCATGTTTGG
* **
36613663 GACATCCATCGGCGACGAGATG-ATAG--TGTAAGACCATGTTTGG
1 GACATGCATCGGCCTCGAGATGTA-AGCATGTAAGACCATGTTTGG
* * *
36613706 GACATGGCATC-GACTTGAGATGTAAGCTAGTGTAAGACCATGTATGG
1 GACAT-GCATCGGCCTCGAGATGTAAGC-A-TGTAAGACCATGTTTGG
36613753 GACATG
1 GACATG
36613759 GCGTTGGTAC
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
42 7 0.09
43 23 0.29
44 5 0.06
45 1 0.01
46 21 0.27
47 21 0.27
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
GACATGCATCGGCCTCGAGATGTAAGCATGTAAGACCATGTTTGG
Found at i:36613754 original size:47 final size:46
Alignment explanation
Indices: 36613502--36613760 Score: 166
Period size: 47 Copynumber: 5.7 Consensus size: 46
36613492 GTTGTTGTTG
*
36613502 GCTAGTGTAAGA-CATGCCTGGGACAT-GCATCAGCCACATT-ATGA-G-A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G--AC-TTGA-GACGAA
* *
36613548 GCTATTGTAAGACCATGTCTGGGACATGGCATC-AGCATTGTGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TTGAGACGA-A
** * *
36613596 GCTAGTGTAAGA-CATGTCTAAGACAT-GCATCGGCCTCGAGACGTAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGAGACG-AA
* * * * * *
36613642 GCCACTGTAAGA-CATGTTTGGGACAT-CCATCGGC--GACGA-GAT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGA-GACGAA
* * *
36613684 GATAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGATGTAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGACG-AA
*
36613731 GCTAGTGTAAGACCATGTATGGGACATGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGC
36613761 GTTGGTACGT
Statistics
Matches: 171, Mismatches: 25, Indels: 33
0.75 0.11 0.14
Matches are distributed among these distances:
42 10 0.06
43 17 0.10
44 9 0.05
45 10 0.06
46 52 0.30
47 56 0.33
48 17 0.10
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGACGAA
Found at i:36621214 original size:46 final size:46
Alignment explanation
Indices: 36621071--36621238 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 46
36621061 GTTGTTGTTG
* * **
36621071 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCAC-A-TTATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGACAT-A-A
* * * * * *
36621117 GCCAATGTAAGACCATGTCTAGGACGTGGCATCAGCATTGAGACGA-GA
1 GCTAGTGTAAGA-CATGTCTAGGACAT-GCATCAGCCTCGAGAC-ATAA
*
36621165 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACATAA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGACATAA
* *
36621211 GCTAGTGTAAGACATGTTTGGGACATGC
1 GCTAGTGTAAGACATGTCTAGGACATGC
36621239 GCCTGCTATG
Statistics
Matches: 97, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
45 1 0.01
46 50 0.52
47 25 0.26
48 19 0.20
49 1 0.01
51 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGACATAA
Found at i:36621284 original size:47 final size:47
Alignment explanation
Indices: 36621115--36621337 Score: 172
Period size: 47 Copynumber: 4.8 Consensus size: 47
36621105 CACATTATGA
* * * * * *
36621115 GAGCCAATGTAAGACCATGTCTAGGACGTGGCATC-AGCATTGAGACGA
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGA-C-TTGAGATGT
* * * * * **
36621163 GAGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGGCCTCGAGACAT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATC-GACTTGAGATGT
* * *
36621209 AAGCTAGTGTAAGA-CATGTTTGGGACATGCGCCT-G-CTATGAGATGAT
1 GAGCCAGTGTAAGACCATGTTTGGGACATG-GCATCGACT-TGAGATG-T
*
36621256 -AGTCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGATGT
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGATGT
* *
36621302 GAGCCAATGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCG
36621338 GCACCTTACC
Statistics
Matches: 145, Mismatches: 20, Indels: 21
0.78 0.11 0.11
Matches are distributed among these distances:
45 2 0.01
46 56 0.39
47 70 0.48
48 17 0.12
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGACTTGAGATGT
Found at i:36623003 original size:60 final size:60
Alignment explanation
Indices: 36622910--36623030 Score: 206
Period size: 60 Copynumber: 2.0 Consensus size: 60
36622900 TGATATAAAA
* *
36622910 TGATAATATTAAACATTTGTTTAATGTATCATCTTTTAAATTTTCCACTTTCCAATTTAG
1 TGATAATATTAAACATTTATTTAATGTATCATCTTTTAAACTTTCCACTTTCCAATTTAG
* *
36622970 TGATAATATTAAACATTTATTTAATTTATCATCTTTTAAGCTTTCCACTTTCCAATTTAG
1 TGATAATATTAAACATTTATTTAATGTATCATCTTTTAAACTTTCCACTTTCCAATTTAG
36623030 T
1 T
36623031 CATTGTCCTT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 57 1.00
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (60 bp):
TGATAATATTAAACATTTATTTAATGTATCATCTTTTAAACTTTCCACTTTCCAATTTAG
Found at i:36625704 original size:31 final size:31
Alignment explanation
Indices: 36625668--36625731 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
36625658 TTAAGTTCCG
*
36625668 TTAATTTTCCTTGAAACTGGAATCATACACC
1 TTAATTTTCCTTGAAACTAGAATCATACACC
36625699 TTAATTTTCCTTGAAACTAGAATCATACACC
1 TTAATTTTCCTTGAAACTAGAATCATACACC
36625730 TT
1 TT
36625732 TATCCCATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.38
Consensus pattern (31 bp):
TTAATTTTCCTTGAAACTAGAATCATACACC
Found at i:36626678 original size:46 final size:47
Alignment explanation
Indices: 36626584--36626716 Score: 128
Period size: 46 Copynumber: 2.9 Consensus size: 47
36626574 ATAATCTCAC
* * *
36626584 CCATAATGAACTCGAAACGCAACTCAACGAGCTCAGG-TG-TTCGTAT
1 CCATAATGAACTCGGAACGCAACTCAACGAG-TTAGGATGCTTCGCAT
* *
36626630 CCATAATGAACTCGGAACACAACTCAACGAGTTTGGATGCTT-GCAT
1 CCATAATGAACTCGGAACGCAACTCAACGAGTTAGGATGCTTCGCAT
* ** * * *
36626676 CCATAGGTGAACTTAGAATGCAACTCAACAAGTTCGGATGC
1 CCATA-ATGAACTCGGAACGCAACTCAACGAGTTAGGATGC
36626717 CTCATAATTC
Statistics
Matches: 72, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 3 0.04
46 39 0.54
47 30 0.42
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.23
Consensus pattern (47 bp):
CCATAATGAACTCGGAACGCAACTCAACGAGTTAGGATGCTTCGCAT
Found at i:36629136 original size:19 final size:19
Alignment explanation
Indices: 36629112--36629152 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
36629102 TCACTTTTTT
36629112 ACTTAAATTCATTGTTAAA
1 ACTTAAATTCATTGTTAAA
36629131 ACTTAAATTCATTGTTAAA
1 ACTTAAATTCATTGTTAAA
36629150 ACT
1 ACT
36629153 AAGTAATTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.41, C:0.12, G:0.05, T:0.41
Consensus pattern (19 bp):
ACTTAAATTCATTGTTAAA
Found at i:36629163 original size:17 final size:19
Alignment explanation
Indices: 36629112--36629163 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
36629102 TCACTTTTTT
* *
36629112 ACTTAAATTCATTGTTAAA
1 ACTTAAAGTAATTGTTAAA
* *
36629131 ACTTAAATTCATTGTTAAA
1 ACTTAAAGTAATTGTTAAA
36629150 AC-T-AAGTAATTGTT
1 ACTTAAAGTAATTGTT
36629164 TAATAAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.29
18 1 0.03
19 21 0.68
ACGTcount: A:0.40, C:0.10, G:0.08, T:0.42
Consensus pattern (19 bp):
ACTTAAAGTAATTGTTAAA
Found at i:36631460 original size:68 final size:66
Alignment explanation
Indices: 36631388--36631559 Score: 165
Period size: 67 Copynumber: 2.6 Consensus size: 66
36631378 CATCATGTGT
* * * *
36631388 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCACATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC-AG-CA-TAT-ATGTAGCTAGGTCACATGCGTGATACCAGTGAAGGACACCA
36631451 TGTAG
62 TGTAG
* * * *
36631456 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGCATATATGTAGCTAGGTCACATGCGTGATACCA-GTGAAGGACACCATGT
36631521 AG
65 AG
*
36631523 ACAAGAGAGCTACGAG-ATAAACTG--GCTAGGTCACATG
1 ACAAGAGAGCTAC-AGCATATA-TGTAGCTAGGTCACATG
36631560 GGTGGTACTA
Statistics
Matches: 89, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
64 23 0.26
65 3 0.03
66 15 0.17
67 31 0.35
68 17 0.19
ACGTcount: A:0.33, C:0.17, G:0.28, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACAGCATATATGTAGCTAGGTCACATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:36643792 original size:39 final size:39
Alignment explanation
Indices: 36643729--36644025 Score: 303
Period size: 39 Copynumber: 7.5 Consensus size: 39
36643719 CAAAGCATGT
* *
36643729 GGGACTTTAAGCCCGAATATAATACCAGCAC-AAAGCCTGC
1 GGGAC-TT-AGCCCGGATATAATACCAGCACGAAAGCCTTC
* *
36643769 GGGACTTTAGCCCGGATATAATACCAGTACGAATGCCTTC
1 GGGAC-TTAGCCCGGATATAATACCAGCACGAAAGCCTTC
* * *
36643809 GGGACGTAGCCCGGATATAACACCAGCGC-AAATGCCTTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAAA-GCC-TTC
* **
36643849 GGGACTTAGCCCGGATATAATACCAGTACGAATTCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTTC
* **
36643888 GGGACTTAGCCCAGATATAATACCAGCACGAATTCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTTC
* * * * * **
36643927 GGGATTTATCCTGAACATAATACCAGCACGAATTCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTTC
* *
36643966 GGGACTTAGCTCGGATATAACACCAGCAC-AAATGCCTTC
1 GGGACTTAGCCCGGATATAATACCAGCACGAAA-GCCTTC
* *
36644005 GGGACTTAACTCGGATATAAT
1 GGGACTTAGCCCGGATATAAT
36644026 TCTCCATTAT
Statistics
Matches: 218, Mismatches: 34, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
38 4 0.02
39 162 0.74
40 50 0.23
41 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (39 bp):
GGGACTTAGCCCGGATATAATACCAGCACGAAAGCCTTC
Found at i:36643965 original size:78 final size:78
Alignment explanation
Indices: 36643729--36644025 Score: 371
Period size: 78 Copynumber: 3.8 Consensus size: 78
36643719 CAAAGCATGT
* * *
36643729 GGGACTTTAAGCCCGAATATAATACCAGCACAAA-GCCTGCGGGACTTTAGCCCGGATATAATAC
1 GGGAC-TT-AGCCCGGATATAACACCAGCACAAATGCCTTCGGGA-TTTAGCCCGGATATAATAC
*
36643793 CAGTACGAATGCCTTC
63 CAGTACGAATTCCTTC
* * *
36643809 GGGACGTAGCCCGGATATAACACCAGCGCAAATGCCTTTCGGGACTTAGCCCGGATATAATACCA
1 GGGACTTAGCCCGGATATAACACCAGCACAAATGCC-TTCGGGATTTAGCCCGGATATAATACCA
36643874 GTACGAATTCCTTC
65 GTACGAATTCCTTC
* * * * * * * *
36643888 GGGACTTAGCCCAGATATAATACCAGCACGAATTCCTTCGGGATTTATCCTGAACATAATACCAG
1 GGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGATTTAGCCCGGATATAATACCAG
*
36643953 CACGAATTCCTTC
66 TACGAATTCCTTC
* * * *
36643966 GGGACTTAGCTCGGATATAACACCAGCACAAATGCCTTCGGGACTTAACTCGGATATAAT
1 GGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGATTTAGCCCGGATATAAT
36644026 TCTCCATTAT
Statistics
Matches: 185, Mismatches: 30, Indels: 6
0.84 0.14 0.03
Matches are distributed among these distances:
78 107 0.58
79 67 0.36
80 11 0.06
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (78 bp):
GGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGATTTAGCCCGGATATAATACCAG
TACGAATTCCTTC
Found at i:36658343 original size:17 final size:17
Alignment explanation
Indices: 36658321--36658354 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
36658311 AATCATTATG
36658321 TAGGTTCATGGAACCCC
1 TAGGTTCATGGAACCCC
36658338 TAGGTTCATGGAACCCC
1 TAGGTTCATGGAACCCC
36658355 CAAACTTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.24
Consensus pattern (17 bp):
TAGGTTCATGGAACCCC
Found at i:36661617 original size:9 final size:10
Alignment explanation
Indices: 36661590--36661616 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
36661580 TGAGTTAAAG
36661590 AAGAAAAATA
1 AAGAAAAATA
36661600 AAGAAAAATA
1 AAGAAAAATA
36661610 AAGAAAA
1 AAGAAAA
36661617 TGGAAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.11, T:0.07
Consensus pattern (10 bp):
AAGAAAAATA
Found at i:36671102 original size:8 final size:7
Alignment explanation
Indices: 36671081--36671105 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36671071 TTGGAACATT
36671081 ATTAAAA
1 ATTAAAA
36671088 ATTAAAA
1 ATTAAAA
36671095 ATTAAAA
1 ATTAAAA
36671102 ATTA
1 ATTA
36671106 TAAAGACTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
ATTAAAA
Found at i:36671779 original size:20 final size:20
Alignment explanation
Indices: 36671762--36671801 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
36671752 ATAACTAATT
*
36671762 TCACCATTATCAAACTAAGC
1 TCACCATAATCAAACTAAGC
*
36671782 TCACCCTAATCAAACTAAGC
1 TCACCATAATCAAACTAAGC
36671802 CTAAATTAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.33, G:0.05, T:0.23
Consensus pattern (20 bp):
TCACCATAATCAAACTAAGC
Done.