Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 112 of 186
Found at i:37004949 original size:20 final size:20
Alignment explanation
Indices: 37004926--37004973 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
37004916 TAAATTCTAA
*
37004926 AAAGATAAATACAA-TTAATT
1 AAAGATAAATA-AAGATAATT
37004946 AAAGATAAATAAAGATAATT
1 AAAGATAAATAAAGATAATT
37004966 AAA-ATAAA
1 AAAGATAAA
37004974 ATCCTAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 7 0.27
20 19 0.73
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (20 bp):
AAAGATAAATAAAGATAATT
Found at i:37005017 original size:15 final size:15
Alignment explanation
Indices: 37004997--37005025 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37004987 ATAATCCTAA
37004997 TAATTATCTTAATAT
1 TAATTATCTTAATAT
37005012 TAATTATCTTAATA
1 TAATTATCTTAATA
37005026 AAATAGAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (15 bp):
TAATTATCTTAATAT
Found at i:37013322 original size:33 final size:33
Alignment explanation
Indices: 37013274--37013340 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
37013264 AACGAAAGAG
37013274 AAGAAATTTTGCCAAAAAGAAGGAAATAAGAAA
1 AAGAAATTTTGCCAAAAAGAAGGAAATAAGAAA
* *
37013307 AAGAATTTTTTCCAAAAAGAAGGAAATAAGAAA
1 AAGAAATTTTGCCAAAAAGAAGGAAATAAGAAA
37013340 A
1 A
37013341 CCCCTAATTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.60, C:0.06, G:0.16, T:0.18
Consensus pattern (33 bp):
AAGAAATTTTGCCAAAAAGAAGGAAATAAGAAA
Found at i:37039795 original size:30 final size:29
Alignment explanation
Indices: 37039723--37039795 Score: 78
Period size: 30 Copynumber: 2.4 Consensus size: 29
37039713 AATAGTTTAT
37039723 ATTTTTATAATTTTTAAAAAATTAAATTAA
1 ATTTTTAT-ATTTTTAAAAAATTAAATTAA
*
37039753 ATTTTTATTATTTTTAAGAGAATTAAAATGT-A
1 ATTTTTA-TATTTTTAA-AAAATT-AAAT-TAA
37039785 A-TTTTATATTT
1 ATTTTTATATTT
37039796 ACTAATTTAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
30 20 0.53
31 11 0.29
32 6 0.16
33 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.53
Consensus pattern (29 bp):
ATTTTTATATTTTTAAAAAATTAAATTAA
Found at i:37041718 original size:178 final size:179
Alignment explanation
Indices: 37041419--37041775 Score: 680
Period size: 178 Copynumber: 2.0 Consensus size: 179
37041409 CCTCCCGGCC
* **
37041419 TCTTCTTTTTTAACCGTTTAAATGCATCTGAGATGTTGGCACATTTATCAATTTGGTTTGAAAGT
1 TCTTCTTTTTTAACCGTTTAAATACATCTGAGATGTTGGCACATTTATCAATAAGGTTTGAAAGT
37041484 TAAAATTATATAATTTATTTTTGCACAATAAAATTAAAAATACTTTATTTATTTACCTTCACATC
66 TAAAATTATATAATTTATTTTTGCACAATAAAATTAAAAATACTTTATTTATTTACCTTCACATC
37041549 CTCCTTTTTAGAAATAAATATTTAAAATAAGAAT-AAAAAATTATATTT
131 CTCCTTTTTAGAAATAAATATTTAAAATAAGAATAAAAAAATTATATTT
37041597 TCTTCTTTTTTAACCGTTTAAATACATCTGAGATGTTGGCACATTTATCAATAAGGTTTGAAAGT
1 TCTTCTTTTTTAACCGTTTAAATACATCTGAGATGTTGGCACATTTATCAATAAGGTTTGAAAGT
37041662 TAAAATTATATAATTTATTTTTGCACAATAAAATTAAAAATACTTTATTTATTTACCTTCACATC
66 TAAAATTATATAATTTATTTTTGCACAATAAAATTAAAAATACTTTATTTATTTACCTTCACATC
37041727 CTCCTTTTTAGAAATAAATATTTAAAATAAGAATAAAAAAATTATATTT
131 CTCCTTTTTAGAAATAAATATTTAAAATAAGAATAAAAAAATTATATTT
37041776 AAATCGATGG
Statistics
Matches: 175, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
178 161 0.92
179 14 0.08
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.43
Consensus pattern (179 bp):
TCTTCTTTTTTAACCGTTTAAATACATCTGAGATGTTGGCACATTTATCAATAAGGTTTGAAAGT
TAAAATTATATAATTTATTTTTGCACAATAAAATTAAAAATACTTTATTTATTTACCTTCACATC
CTCCTTTTTAGAAATAAATATTTAAAATAAGAATAAAAAAATTATATTT
Found at i:37041989 original size:95 final size:95
Alignment explanation
Indices: 37041826--37042019 Score: 372
Period size: 95 Copynumber: 2.0 Consensus size: 95
37041816 AAATAATAAA
37041826 ATTGTATTTATGGGGATTACTCTTCTTTTCTACACGACAGCAACGTGTTAGATTAAGGGCTCCTT
1 ATTGTATTTATGGGGATTACTCTTCTTTTCTACACGACAGCAACGTGTTAGATTAAGGGCTCCTT
37041891 TGGATGCCCGTTTTTCTGTGGTGTGGTGAG
66 TGGATGCCCGTTTTTCTGTGGTGTGGTGAG
37041921 ATTGTATTTATGGGGATTACTCTTCTTTTCTACACGACAGCAAC-TGGTTAGATTAAGGGCTCCT
1 ATTGTATTTATGGGGATTACTCTTCTTTTCTACACGACAGCAACGT-GTTAGATTAAGGGCTCCT
37041985 TTGGATGCCCGTTTTTCTGTGGTGTGGTGAG
65 TTGGATGCCCGTTTTTCTGTGGTGTGGTGAG
37042016 ATTG
1 ATTG
37042020 AGTGTTATTT
Statistics
Matches: 98, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
94 1 0.01
95 97 0.99
ACGTcount: A:0.18, C:0.16, G:0.26, T:0.39
Consensus pattern (95 bp):
ATTGTATTTATGGGGATTACTCTTCTTTTCTACACGACAGCAACGTGTTAGATTAAGGGCTCCTT
TGGATGCCCGTTTTTCTGTGGTGTGGTGAG
Found at i:37042622 original size:21 final size:21
Alignment explanation
Indices: 37042598--37042650 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
37042588 CATTGTTTCT
*
37042598 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
** *
37042619 AATCTCACCATTACAGTAACT
1 AATCTCACCGCTACAGTAACC
37042640 AATCTCACCGC
1 AATCTCACCGC
37042651 CACCGCTATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.32, C:0.36, G:0.08, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:37043150 original size:28 final size:28
Alignment explanation
Indices: 37043119--37043181 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 28
37043109 TCCCATATTA
37043119 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
37043147 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
37043175 ATGGGGT
1 ATGGGGT
37043182 TGATAATGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.32, C:0.06, G:0.30, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:37044364 original size:15 final size:15
Alignment explanation
Indices: 37044344--37044379 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
37044334 TCTTCCAAGG
37044344 TCTTTCATTTCAAAT
1 TCTTTCATTTCAAAT
37044359 TCTTTCATTTCAAAT
1 TCTTTCATTTCAAAT
37044374 TCTTTC
1 TCTTTC
37044380 TTCAAGCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.22, C:0.22, G:0.00, T:0.56
Consensus pattern (15 bp):
TCTTTCATTTCAAAT
Found at i:37045783 original size:156 final size:156
Alignment explanation
Indices: 37045499--37045811 Score: 626
Period size: 156 Copynumber: 2.0 Consensus size: 156
37045489 AATGAATAAT
37045499 TTTTGGAACTTCTAAATCACATTGCTTAGTTCGAGGATCAAGATGAGCTAATGACAACTCTTTCC
1 TTTTGGAACTTCTAAATCACATTGCTTAGTTCGAGGATCAAGATGAGCTAATGACAACTCTTTCC
37045564 AACTAATTTTCTTATCCAACTGTTAGATTTCTCCCTCTAATGTTGGAAAAATTGACTCGTCAAAA
66 AACTAATTTTCTTATCCAACTGTTAGATTTCTCCCTCTAATGTTGGAAAAATTGACTCGTCAAAA
37045629 TGACAATCTGCAAAACGAGCCGTAAA
131 TGACAATCTGCAAAACGAGCCGTAAA
37045655 TTTTGGAACTTCTAAATCACATTGCTTAGTTCGAGGATCAAGATGAGCTAATGACAACTCTTTCC
1 TTTTGGAACTTCTAAATCACATTGCTTAGTTCGAGGATCAAGATGAGCTAATGACAACTCTTTCC
37045720 AACTAATTTTCTTATCCAACTGTTAGATTTCTCCCTCTAATGTTGGAAAAATTGACTCGTCAAAA
66 AACTAATTTTCTTATCCAACTGTTAGATTTCTCCCTCTAATGTTGGAAAAATTGACTCGTCAAAA
37045785 TGACAATCTGCAAAACGAGCCGTAAA
131 TGACAATCTGCAAAACGAGCCGTAAA
37045811 T
1 T
37045812 AGATTCCCTG
Statistics
Matches: 157, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 157 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (156 bp):
TTTTGGAACTTCTAAATCACATTGCTTAGTTCGAGGATCAAGATGAGCTAATGACAACTCTTTCC
AACTAATTTTCTTATCCAACTGTTAGATTTCTCCCTCTAATGTTGGAAAAATTGACTCGTCAAAA
TGACAATCTGCAAAACGAGCCGTAAA
Found at i:37048736 original size:28 final size:28
Alignment explanation
Indices: 37048705--37048761 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
37048695 TCCCATATTA
37048705 ATGGGGTATAGGAAAAGTCTCATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
* * *
37048733 ATGGGGTATAGGAAGAGTTTTATAACTT
1 ATGGGGTATAGGAAAAGTCTCATAACTT
37048761 A
1 A
37048762 GGGTTGATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.35, C:0.07, G:0.26, T:0.32
Consensus pattern (28 bp):
ATGGGGTATAGGAAAAGTCTCATAACTT
Found at i:37053724 original size:13 final size:15
Alignment explanation
Indices: 37053695--37053730 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
37053685 AAATTTAACT
37053695 ATATAT-TTTTAAAA
1 ATATATGTTTTAAAA
37053709 ATA-ATGTTTT-AAA
1 ATATATGTTTTAAAA
37053722 ATATATGTT
1 ATATATGTT
37053731 ACAAATTGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (15 bp):
ATATATGTTTTAAAA
Found at i:37057105 original size:18 final size:18
Alignment explanation
Indices: 37057078--37057113 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37057068 TGTAAAATAA
*
37057078 AAATATTTAAACATAATT
1 AAATAATTAAACATAATT
*
37057096 AAATAATTAAATATAATT
1 AAATAATTAAACATAATT
37057114 TTTTTTCACC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATAATTAAACATAATT
Found at i:37060333 original size:65 final size:64
Alignment explanation
Indices: 37060227--37060354 Score: 211
Period size: 65 Copynumber: 2.0 Consensus size: 64
37060217 ACCACTTACG
* *
37060227 CACCCTATTTTTCTTAAGCATCGAATGTAGGTTCCAACATTCTGTATTGTAATGTTTGTATATA
1 CACCCTATTTTTCTTAAGCATCGAATGTAGATTCCAACATTCTGTATTATAATGTTTGTATATA
* *
37060291 CACCCTATTTTTCTTCAAGTATCGAATGTAGATTCCAGCATTCTGTATTATAATGTTTGTATAT
1 CACCCTATTTTTCTT-AAGCATCGAATGTAGATTCCAACATTCTGTATTATAATGTTTGTATAT
37060355 TGTTGATTTA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
64 15 0.25
65 44 0.75
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.43
Consensus pattern (64 bp):
CACCCTATTTTTCTTAAGCATCGAATGTAGATTCCAACATTCTGTATTATAATGTTTGTATATA
Found at i:37066655 original size:17 final size:17
Alignment explanation
Indices: 37066628--37066712 Score: 68
Period size: 17 Copynumber: 4.9 Consensus size: 17
37066618 TTAATCACCC
37066628 TATTT-TTATTTTATTT
1 TATTTATTATTTTATTT
37066644 TATTTATTATTTATTATATT
1 TATTTATTA-TT-TTAT-TT
* *
37066664 TTTTTATT-TTTTATTG
1 TATTTATTATTTTATTT
* *
37066680 TATTAAACT-TTTTATTT
1 TATT-TATTATTTTATTT
37066697 TATTTATTATTCTTAT
1 TATTTATTATT-TTAT
37066713 ACTTATATTC
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
16 11 0.20
17 22 0.41
18 8 0.15
19 4 0.07
20 9 0.17
ACGTcount: A:0.24, C:0.02, G:0.01, T:0.73
Consensus pattern (17 bp):
TATTTATTATTTTATTT
Found at i:37066668 original size:24 final size:23
Alignment explanation
Indices: 37066628--37066706 Score: 74
Period size: 24 Copynumber: 3.4 Consensus size: 23
37066618 TTAATCACCC
* *
37066628 TATTT-TTATTTTATTTTATTTAT
1 TATTTATTATATTTTTTTATTT-T
37066651 TATTTATTATATTTTTTTATTTTT
1 TATTTATTATATTTTTTTA-TTTT
**
37066675 TATTGTATTA-AACTTTTTA-TTT
1 TATT-TATTATATTTTTTTATTTT
37066697 TATTTATTAT
1 TATTTATTAT
37066707 TCTTATACTT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
21 5 0.10
22 7 0.15
23 5 0.10
24 23 0.48
25 8 0.17
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.73
Consensus pattern (23 bp):
TATTTATTATATTTTTTTATTTT
Found at i:37066669 original size:20 final size:20
Alignment explanation
Indices: 37066628--37066674 Score: 69
Period size: 21 Copynumber: 2.4 Consensus size: 20
37066618 TTAATCACCC
*
37066628 TATTTTTATTTTATTTTATT
1 TATTTTTATTATATTTTATT
37066648 TATTATTTATTATATTTT-TT
1 TATT-TTTATTATATTTTATT
37066668 TATTTTT
1 TATTTTT
37066675 TATTGTATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 3 0.12
20 10 0.40
21 12 0.48
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (20 bp):
TATTTTTATTATATTTTATT
Found at i:37066672 original size:29 final size:28
Alignment explanation
Indices: 37066642--37066707 Score: 77
Period size: 29 Copynumber: 2.5 Consensus size: 28
37066632 TTTATTTTAT
*
37066642 TTTATTTATTATTTATT--A-TATTT-T
1 TTTATTTATTATTTATTAAACTTTTTAT
*
37066666 TTTATTTTTTATTGTATTAAACTTTTTAT
1 TTTATTTATTATT-TATTAAACTTTTTAT
37066695 TTTATTTATTATT
1 TTTATTTATTATT
37066708 CTTATACTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
24 12 0.35
25 4 0.12
27 1 0.03
28 4 0.12
29 13 0.38
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.73
Consensus pattern (28 bp):
TTTATTTATTATTTATTAAACTTTTTAT
Found at i:37066676 original size:20 final size:21
Alignment explanation
Indices: 37066630--37066683 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 21
37066620 AATCACCCTA
*
37066630 TTTTTATTTTATTTTATTTAT
1 TTTTTATTATATTTTATTTAT
*
37066651 TATTTATTATATTTT-TTTAT
1 TTTTTATTATATTTTATTTAT
*
37066671 TTTTTATTGTATT
1 TTTTTATTATATT
37066684 AAACTTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.78
Consensus pattern (21 bp):
TTTTTATTATATTTTATTTAT
Found at i:37072434 original size:10 final size:11
Alignment explanation
Indices: 37072394--37072476 Score: 62
Period size: 11 Copynumber: 7.5 Consensus size: 11
37072384 TTTTGCAGGT
*
37072394 TTTTGGTGTTG
1 TTTTGATGTTG
*
37072405 TTGGTGATGTTG
1 TT-TTGATGTTG
*
37072417 TTTTTTG-TGTTC
1 --TTTTGATGTTG
*
37072429 TTTTGTTGTTG
1 TTTTGATGTTG
*
37072440 -TTTGGTGTTG
1 TTTTGATGTTG
37072450 TTTTGATGTTG
1 TTTTGATGTTG
* *
37072461 TTTTGGTGCTG
1 TTTTGATGTTG
37072472 TTTTG
1 TTTTG
37072477 CTGCTACTTT
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
10 14 0.24
11 29 0.50
12 11 0.19
13 2 0.03
14 2 0.03
ACGTcount: A:0.02, C:0.02, G:0.31, T:0.64
Consensus pattern (11 bp):
TTTTGATGTTG
Found at i:37072447 original size:21 final size:21
Alignment explanation
Indices: 37072412--37072468 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
37072402 TTGTTGGTGA
*
37072412 TGTTGTT-TTTTGTGTTCTTT
1 TGTTGTTGTTTGGTGTTCTTT
*
37072432 TGTTGTTGTTTGGTGTTGTTT
1 TGTTGTTGTTTGGTGTTCTTT
*
37072453 TGATGTTGTTTTGGTG
1 TGTTGTTG-TTTGGTG
37072469 CTGTTTTGCT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 7 0.22
21 18 0.56
22 7 0.22
ACGTcount: A:0.02, C:0.02, G:0.30, T:0.67
Consensus pattern (21 bp):
TGTTGTTGTTTGGTGTTCTTT
Found at i:37072465 original size:32 final size:30
Alignment explanation
Indices: 37072415--37072474 Score: 75
Period size: 32 Copynumber: 1.9 Consensus size: 30
37072405 TTGGTGATGT
* *
37072415 TGTTTTTTGTGTTCTTTTGTTGTTGTTTGG
1 TGTTTTTTGTGTTCTTTTGGTGCTGTTTGG
*
37072445 TGTTGTTTTGATGTTGTTTTGGTGCTGTTT
1 TGTT-TTTTG-TGTTCTTTTGGTGCTGTTT
37072475 TGCTGCTACT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 4 0.16
31 5 0.20
32 16 0.64
ACGTcount: A:0.02, C:0.03, G:0.28, T:0.67
Consensus pattern (30 bp):
TGTTTTTTGTGTTCTTTTGGTGCTGTTTGG
Found at i:37072742 original size:25 final size:25
Alignment explanation
Indices: 37072709--37072757 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
37072699 TTTATTTTAA
* *
37072709 TATTTATTT-TTATGTTTTTAAATG
1 TATTTATTTATTATATTTTAAAATG
37072733 TATTTGATTTATTATATTTTAAAAT
1 TATTT-ATTTATTATATTTTAAAAT
37072758 TTTCTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 5 0.24
25 4 0.19
26 12 0.57
ACGTcount: A:0.31, C:0.00, G:0.06, T:0.63
Consensus pattern (25 bp):
TATTTATTTATTATATTTTAAAATG
Found at i:37078369 original size:6 final size:6
Alignment explanation
Indices: 37078358--37078457 Score: 85
Period size: 6 Copynumber: 16.3 Consensus size: 6
37078348 CTGATTTTTT
* *
37078358 TTTATG TTTATG TTTATG TTTATG TTTATG TTTACT- TTTATCT TTTATT
1 TTTATG TTTATG TTTATG TTTATG TTTATG TTTA-TG TTTAT-G TTTATG
* * * * * * *
37078407 TTTATCT TTTATT TTTATT TTTATT TTTATT TTTCTG TTTATG TTTGTG
1 TTTAT-G TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG TTTATG
37078456 TT
1 TT
37078458 ATTTTCTTAT
Statistics
Matches: 86, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
5 1 0.01
6 73 0.85
7 12 0.14
ACGTcount: A:0.14, C:0.04, G:0.09, T:0.73
Consensus pattern (6 bp):
TTTATG
Found at i:37078409 original size:13 final size:12
Alignment explanation
Indices: 37078352--37078440 Score: 99
Period size: 12 Copynumber: 7.3 Consensus size: 12
37078342 TTTAGTCTGA
37078352 TTTT-TTTTTAT
1 TTTTATTTTTAT
* *
37078363 GTTTATGTTTAT
1 TTTTATTTTTAT
* *
37078375 GTTTATGTTTAT
1 TTTTATTTTTAT
* *
37078387 GTTTACTTTTAT
1 TTTTATTTTTAT
37078399 CTTTTATTTTTAT
1 -TTTTATTTTTAT
37078412 CTTTTATTTTTAT
1 -TTTTATTTTTAT
37078425 TTTTATTTTTAT
1 TTTTATTTTTAT
37078437 TTTT
1 TTTT
37078441 CTGTTTATGT
Statistics
Matches: 70, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
11 3 0.04
12 44 0.63
13 23 0.33
ACGTcount: A:0.15, C:0.03, G:0.06, T:0.76
Consensus pattern (12 bp):
TTTTATTTTTAT
Found at i:37079658 original size:11 final size:11
Alignment explanation
Indices: 37079642--37079669 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
37079632 TTAACCCAAG
37079642 CCCTGTTACAA
1 CCCTGTTACAA
37079653 CCCTGTTACAA
1 CCCTGTTACAA
37079664 CCCTGT
1 CCCTGT
37079670 AAAGACCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.39, G:0.11, T:0.29
Consensus pattern (11 bp):
CCCTGTTACAA
Found at i:37091190 original size:41 final size:41
Alignment explanation
Indices: 37091143--37091370 Score: 390
Period size: 41 Copynumber: 5.6 Consensus size: 41
37091133 CAGACGTTAC
* *
37091143 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTATAT
37091184 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
37091225 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
37091266 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
37091307 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
37091348 GTCTAGCAGGC-TAAGTGCCGGTG
1 GTCTAGCAGGCTTAA-TGCCGGTG
37091371 TACTGAATCA
Statistics
Matches: 182, Mismatches: 2, Indels: 6
0.96 0.01 0.03
Matches are distributed among these distances:
39 2 0.01
40 5 0.03
41 175 0.96
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.30
Consensus pattern (41 bp):
GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
Found at i:37091395 original size:123 final size:122
Alignment explanation
Indices: 37091145--37091412 Score: 373
Period size: 123 Copynumber: 2.2 Consensus size: 122
37091135 GACGTTACGT
*
37091145 CTAGCAGGCTTAATGCCGGTGAAGTAATTCAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATA
1 CTAGCAGGCTTAATGCCGGTG-AGTAATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGATA
* * *
37091210 CATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGT
65 CATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATATCAGACTATAAGC
*
37091268 CTAGCAGGCTTAATGCCGGTGA-TACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGAT
1 CTAGCAGGCTTAATGCCGGTGAGTA-A-TTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAT
* *
37091332 ACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAATCAGGCTTTAAGC
64 ACATTTCAGACTATATGTCTAGCAGGCTTAA-TGCCGGTGATACAT--ATCAGACTATAAGC
**
37091391 CTAGCAGGCAAAATGCCGGTGA
1 CTAGCAGGCTTAATGCCGGTGA
37091413 ATCTGTTTAA
Statistics
Matches: 131, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
121 3 0.02
122 8 0.06
123 120 0.92
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (122 bp):
CTAGCAGGCTTAATGCCGGTGAGTAATTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGATAC
ATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATATCAGACTATAAGC
Found at i:37100592 original size:31 final size:32
Alignment explanation
Indices: 37100520--37100593 Score: 107
Period size: 31 Copynumber: 2.4 Consensus size: 32
37100510 AAATTTGTTA
37100520 TTTAGTCACT-TCCGTTAGATAAATTGTCAAT
1 TTTAGTCACTCTCCGTTAGATAAATTGTCAAT
* * *
37100551 TTTAGTCACTCT-TGTTAGATAAGTTGTTAAT
1 TTTAGTCACTCTCCGTTAGATAAATTGTCAAT
37100582 TTTAGTCACTCT
1 TTTAGTCACTCT
37100594 ACCTTTAAAT
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
31 38 0.97
32 1 0.03
ACGTcount: A:0.26, C:0.15, G:0.14, T:0.46
Consensus pattern (32 bp):
TTTAGTCACTCTCCGTTAGATAAATTGTCAAT
Found at i:37104175 original size:20 final size:20
Alignment explanation
Indices: 37104132--37104172 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
37104122 TTATAAAAAC
*
37104132 AATAAATTTAACTAATTATA
1 AATAAAATTAACTAATTATA
*
37104152 AATAAAATTAA-TTATTATA
1 AATAAAATTAACTAATTATA
37104171 AA
1 AA
37104173 ATATAAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (20 bp):
AATAAAATTAACTAATTATA
Found at i:37105541 original size:3 final size:3
Alignment explanation
Indices: 37105533--37105558 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
37105523 CAATCAGATA
37105533 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
37105559 AGAAATTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:37108521 original size:3 final size:3
Alignment explanation
Indices: 37108513--37108538 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
37108503 TTTCCTCCCG
37108513 ACA ACA ACA ACA ACA ACA ACA ACA AC
1 ACA ACA ACA ACA ACA ACA ACA ACA AC
37108539 GCCGCAAGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.35, G:0.00, T:0.00
Consensus pattern (3 bp):
ACA
Found at i:37109547 original size:6 final size:6
Alignment explanation
Indices: 37109536--37109574 Score: 51
Period size: 7 Copynumber: 6.0 Consensus size: 6
37109526 TGTCTCTTAG
37109536 TTTTTA TTTTTA TTTTTTA TTTTTA TTCTTTA TTCTTTA
1 TTTTTA TTTTTA -TTTTTA TTTTTA TT-TTTA TT-TTTA
37109575 AACATAAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 14 0.45
7 17 0.55
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTTA
Found at i:37109554 original size:13 final size:13
Alignment explanation
Indices: 37109536--37109574 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
37109526 TGTCTCTTAG
37109536 TTTTTATTTTTAT
1 TTTTTATTTTTAT
37109549 TTTTTATTTTTAT
1 TTTTTATTTTTAT
*
37109562 TCTTTATTCTTTA
1 TTTTTATT-TTTA
37109575 AACATAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 20 0.83
14 4 0.17
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:37111037 original size:5 final size:5
Alignment explanation
Indices: 37111027--37111058 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
37111017 TTGTTTCCTT
37111027 TTTTA TTTTA TTTTA TTTTA TTTTA TTATTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT-TTA T
37111059 AGTAAGGTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 22 0.85
6 4 0.15
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:37123969 original size:40 final size:41
Alignment explanation
Indices: 37123898--37123991 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 41
37123888 TATCTCGGTA
**
37123898 TCGCACACTTAGTGCCTCATATAGCTGAAGCTA-TTCCAAC
1 TCGCACACTTAGTGCCTCATATAGCCAAAGCTATTTCCAAC
* * *
37123938 TCGCACACTTAGTGCCAT-TTGTAGCCAAAGCTATTTCGAAC
1 TCGCACACTTAGTGCC-TCATATAGCCAAAGCTATTTCCAAC
37123979 -CGCACACTTAGTG
1 TCGCACACTTAGTG
37123992 ACGAACATAG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
40 40 0.85
41 7 0.15
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.28
Consensus pattern (41 bp):
TCGCACACTTAGTGCCTCATATAGCCAAAGCTATTTCCAAC
Found at i:37131349 original size:25 final size:27
Alignment explanation
Indices: 37131303--37131359 Score: 75
Period size: 25 Copynumber: 2.2 Consensus size: 27
37131293 TAAGCCCTTT
37131303 TAAAATTTATAAATTACTAAAAAATCA
1 TAAAATTTATAAATTACTAAAAAATCA
*
37131330 TAAAA-TTAT-AATTA-TAAAAAAGTTA
1 TAAAATTTATAAATTACTAAAAAA-TCA
37131355 TAAAA
1 TAAAA
37131360 AATTTAAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 7 0.25
25 12 0.43
26 4 0.14
27 5 0.18
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (27 bp):
TAAAATTTATAAATTACTAAAAAATCA
Found at i:37131360 original size:26 final size:27
Alignment explanation
Indices: 37131303--37131360 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
37131293 TAAGCCCTTT
*
37131303 TAAAATTTATAAATTACTAAAAAATCA
1 TAAAAATTATAAATTACTAAAAAATCA
*
37131330 T-AAAATTAT-AATTA-TAAAAAAGTTA
1 TAAAAATTATAAATTACTAAAAAA-TCA
37131355 TAAAAA
1 TAAAAA
37131361 ATTTAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
24 7 0.26
25 8 0.30
26 11 0.41
27 1 0.04
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (27 bp):
TAAAAATTATAAATTACTAAAAAATCA
Found at i:37131372 original size:17 final size:17
Alignment explanation
Indices: 37131313--37131373 Score: 52
Period size: 17 Copynumber: 3.5 Consensus size: 17
37131303 TAAAATTTAT
37131313 AAATTACTAAAAAATCATA
1 AAATTA-TAAAAAAT-ATA
** *
37131332 AAATTAT-AATTATAAA
1 AAATTATAAAAAATATA
*
37131348 AAAGTTATAAAAAATTTA
1 AAA-TTATAAAAAATATA
37131366 AAATTATA
1 AAATTATA
37131374 TTTTTTATTT
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
16 5 0.15
17 13 0.39
18 9 0.27
19 6 0.18
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (17 bp):
AAATTATAAAAAATATA
Found at i:37131515 original size:10 final size:10
Alignment explanation
Indices: 37131485--37131517 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
37131475 TAAAAAAATT
37131485 ATAATTTTT-
1 ATAATTTTTA
37131494 ATAAATTTTTA
1 AT-AATTTTTA
37131505 ATAATTTTTA
1 ATAATTTTTA
37131515 ATA
1 ATA
37131518 TTTAAAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 2 0.09
10 18 0.82
11 2 0.09
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
ATAATTTTTA
Found at i:37159937 original size:46 final size:46
Alignment explanation
Indices: 37159887--37160058 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
37159877 TGAGCATCCA
37159887 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
* * *
37159933 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCCG
*
37159980 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC-G
* *
37160026 AGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37160059 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 57 0.53
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCG
Found at i:37160039 original size:93 final size:93
Alignment explanation
Indices: 37159880--37160051 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
37159870 GGATGGTTGA
*
37159880 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
37159945 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
37159973 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
37160037 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
37160052 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37167508 original size:46 final size:46
Alignment explanation
Indices: 37167458--37167633 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
37167448 TGGTTGAGCA
37167458 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37167504 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
37167549 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
37167597 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37167634 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:37167614 original size:93 final size:93
Alignment explanation
Indices: 37167455--37167626 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
37167445 GGATGGTTGA
* *
37167455 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37167520 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
37167548 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
37167613 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
37167627 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:37171454 original size:11 final size:11
Alignment explanation
Indices: 37171440--37171470 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
37171430 TATGATTTGA
37171440 TTAAATGTATG
1 TTAAATGTATG
37171451 TTAAATGTATG
1 TTAAATGTATG
37171462 TATAAATGT
1 T-TAAATGT
37171471 GTTGTAAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.39, C:0.00, G:0.16, T:0.45
Consensus pattern (11 bp):
TTAAATGTATG
Found at i:37172315 original size:19 final size:18
Alignment explanation
Indices: 37172287--37172323 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
37172277 TGTCGATAAT
*
37172287 TTTATTTTTTTCATTTTA
1 TTTATTTTTTTAATTTTA
37172305 TTTATTATTTTTAATTTTA
1 TTTATT-TTTTTAATTTTA
37172324 ATTTTAGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTATTTTTTTAATTTTA
Found at i:37172334 original size:19 final size:18
Alignment explanation
Indices: 37172283--37172336 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
37172273 TCAGTGTCGA
*
37172283 TAATTTTATTTTTTTCATTT
1 TAATTTTA--TTTTTAATTT
*
37172303 TATTTATTATTTTTAATTT
1 TAATT-TTATTTTTAATTT
37172322 TAATTTTAGTTTTTA
1 TAATTTTA-TTTTTA
37172337 TCTTAGTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
18 3 0.10
19 19 0.66
20 4 0.14
21 3 0.10
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (18 bp):
TAATTTTATTTTTAATTT
Found at i:37177521 original size:23 final size:23
Alignment explanation
Indices: 37177487--37177545 Score: 68
Period size: 23 Copynumber: 2.6 Consensus size: 23
37177477 ATTATAAAAA
* *
37177487 AAATATT-CTTTAACGAAACAA-
1 AAATATTATTTTAACAAAACAAT
*
37177508 AAATCATTATTTTAACAAAATAAT
1 AAAT-ATTATTTTAACAAAACAAT
37177532 AAATATTATTTTAA
1 AAATATTATTTTAA
37177546 AAATATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.12
22 3 0.09
23 21 0.66
24 4 0.12
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.37
Consensus pattern (23 bp):
AAATATTATTTTAACAAAACAAT
Found at i:37177550 original size:21 final size:24
Alignment explanation
Indices: 37177495--37177545 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
37177485 AAAAATATTC
* *
37177495 TTTAACGAAACAA-AAATCATTAT
1 TTTAACAAAATAATAAATCATTAT
37177518 TTTAACAAAATAATAAAT-ATTAT
1 TTTAACAAAATAATAAATCATTAT
37177541 TTTAA
1 TTTAA
37177546 AAATATTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 21 0.84
24 4 0.16
ACGTcount: A:0.53, C:0.08, G:0.02, T:0.37
Consensus pattern (24 bp):
TTTAACAAAATAATAAATCATTAT
Found at i:37178851 original size:21 final size:21
Alignment explanation
Indices: 37178827--37178866 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
37178817 AATACCACGT
*
37178827 GTCAAGTTGAAATTATTATAG
1 GTCAAGTTAAAATTATTATAG
*
37178848 GTCAAGTTAAAATTTTTAT
1 GTCAAGTTAAAATTATTAT
37178867 GGATGAATGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.42
Consensus pattern (21 bp):
GTCAAGTTAAAATTATTATAG
Found at i:37180748 original size:44 final size:44
Alignment explanation
Indices: 37180697--37180788 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 44
37180687 CCGAAGTAAC
* *
37180697 AGTAACAGTACTACACACA-AGGTGTCTCATCGACTCGAA-GTCGA
1 AGTAACAGTACGACACACATA-GTGCCTCATCGACTC-AAGGTCGA
**
37180741 AGTAACAGTACGACACTTATAGTGCCTCATCGACTCAAGGTCGA
1 AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAGGTCGA
37180785 AGTA
1 AGTA
37180789 TCTCTGAACA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
43 2 0.05
44 39 0.93
45 1 0.02
ACGTcount: A:0.34, C:0.24, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTAACAGTACGACACACATAGTGCCTCATCGACTCAAGGTCGA
Found at i:37181409 original size:25 final size:25
Alignment explanation
Indices: 37181375--37181422 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
37181365 CATTTGTTAC
*
37181375 AATTCAATTTATTTTATAATATAAT
1 AATTCAATTTAATTTATAATATAAT
*
37181400 AATTTAATTTAATTTATAATATA
1 AATTCAATTTAATTTATAATATA
37181423 CTTTTTATCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
AATTCAATTTAATTTATAATATAAT
Found at i:37181567 original size:3 final size:3
Alignment explanation
Indices: 37181559--37181603 Score: 74
Period size: 3 Copynumber: 15.3 Consensus size: 3
37181549 TTAATTTATT
*
37181559 TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA T-A TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
37181604 TAATCTAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
2 2 0.05
3 37 0.95
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:37187304 original size:22 final size:22
Alignment explanation
Indices: 37187247--37187307 Score: 104
Period size: 22 Copynumber: 2.8 Consensus size: 22
37187237 ACCCCTACTT
*
37187247 AATTAATATGCAAACCCTGATA
1 AATTAATATGCGAACCCTGATA
37187269 AATTAATATGCGAACCCTGATA
1 AATTAATATGCGAACCCTGATA
*
37187291 AATTAATATACGAACCC
1 AATTAATATGCGAACCC
37187308 CTACATTGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 37 1.00
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.26
Consensus pattern (22 bp):
AATTAATATGCGAACCCTGATA
Found at i:37187435 original size:24 final size:24
Alignment explanation
Indices: 37187347--37187434 Score: 140
Period size: 24 Copynumber: 3.6 Consensus size: 24
37187337 GTTAGTATAT
37187347 AACCACCTATCACCAGACATGTGCA
1 AACC-CCTATCACCAGACATGTGCA
37187372 AACCCCTATCACCAGACATGTGCA
1 AACCCCTATCACCAGACATGTGCA
* * *
37187396 AACCCTTATCACCAGTCATGTGCG
1 AACCCCTATCACCAGACATGTGCA
37187420 AACCCCTATCACCAG
1 AACCCCTATCACCAG
37187435 TGACATGAGA
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
24 55 0.93
25 4 0.07
ACGTcount: A:0.32, C:0.38, G:0.12, T:0.18
Consensus pattern (24 bp):
AACCCCTATCACCAGACATGTGCA
Found at i:37187446 original size:24 final size:23
Alignment explanation
Indices: 37187347--37187455 Score: 114
Period size: 24 Copynumber: 4.6 Consensus size: 23
37187337 GTTAGTATAT
37187347 AACCACCTATCACCAGACATGTGCA
1 AACC-CCTATCACCAGACATGTG-A
37187372 AACCCCTATCACCAGACATGTGCA
1 AACCCCTATCACCAGACATGTG-A
* * *
37187396 AACCCTTATCACCAGTCATGTGCG
1 AACCCCTATCACCAGACATGTG-A
*
37187420 AACCCCTATCACCAGTGACATGAG-
1 AACCCCTATCACCA--GACATGTGA
37187444 AA-CCCTATCACC
1 AACCCCTATCACC
37187456 TCATATGTGA
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
23 10 0.13
24 56 0.74
25 4 0.05
26 6 0.08
ACGTcount: A:0.32, C:0.37, G:0.13, T:0.18
Consensus pattern (23 bp):
AACCCCTATCACCAGACATGTGA
Found at i:37187448 original size:48 final size:46
Alignment explanation
Indices: 37187352--37187455 Score: 138
Period size: 48 Copynumber: 2.2 Consensus size: 46
37187342 TATATAACCA
*
37187352 CCTATCACCAGACATGTGCAAACCCCTATCACCAGACATGTGCAAAC
1 CCTATCACCAGACATGTGCAAACCCCTATCACCAGACATGAG-AAAC
* *
37187399 CCTTATCACCAGTCATGTGCGAACCCCTATCACCAGTGACATGAG-AAC
1 CC-TATCACCAGACATGTGCAAACCCCTATCACCA--GACATGAGAAAC
37187447 CCTATCACC
1 CCTATCACC
37187456 TCATATGTGA
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
47 9 0.18
48 35 0.69
50 7 0.14
ACGTcount: A:0.31, C:0.37, G:0.13, T:0.19
Consensus pattern (46 bp):
CCTATCACCAGACATGTGCAAACCCCTATCACCAGACATGAGAAAC
Found at i:37187552 original size:33 final size:31
Alignment explanation
Indices: 37187515--37187599 Score: 84
Period size: 31 Copynumber: 2.6 Consensus size: 31
37187505 GTCAAATCCT
*
37187515 TGTGTGAATC-TACCTATGTGCAAACCTTACCAC
1 TGTGTGAACCATACC-ATGTG--AACCTTACCAC
* *
37187548 TGTGTGAACCATACCATGTGAGCCTTACCAT
1 TGTGTGAACCATACCATGTGAACCTTACCAC
37187579 TGTGTGAAACC-TACCCATGTG
1 TGTGTG-AACCATA-CCATGTG
37187600 TGAGCTTACT
Statistics
Matches: 46, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
31 17 0.37
32 11 0.24
33 14 0.30
34 4 0.09
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (31 bp):
TGTGTGAACCATACCATGTGAACCTTACCAC
Found at i:37187557 original size:17 final size:16
Alignment explanation
Indices: 37187515--37187602 Score: 58
Period size: 17 Copynumber: 5.4 Consensus size: 16
37187505 GTCAAATCCT
*
37187515 TGTGTGAATC-TACCTA
1 TGTGTGAACCTTACC-A
**
37187531 TGTGCAAACCTTACCA
1 TGTGTGAACCTTACCA
*
37187547 CTGTGTGAACCATACCA
1 -TGTGTGAACCTTACCA
*
37187564 --TGTGAGCCTTACCA
1 TGTGTGAACCTTACCA
37187578 TTGTGTGAAACC-TACCCA
1 -TGTGTG-AACCTTA-CCA
37187596 TGTGTGA
1 TGTGTGA
37187603 GCTTACTTAT
Statistics
Matches: 56, Mismatches: 9, Indels: 14
0.71 0.11 0.18
Matches are distributed among these distances:
14 12 0.21
16 9 0.16
17 29 0.52
18 6 0.11
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (16 bp):
TGTGTGAACCTTACCA
Found at i:37187577 original size:31 final size:32
Alignment explanation
Indices: 37187539--37187599 Score: 90
Period size: 31 Copynumber: 1.9 Consensus size: 32
37187529 TATGTGCAAA
37187539 CCTTACCACTGTGTG-AACCATA-CCATGTGAG
1 CCTTACCACTGTGTGAAACC-TACCCATGTGAG
*
37187570 CCTTACCATTGTGTGAAACCTACCCATGTG
1 CCTTACCACTGTGTGAAACCTACCCATGTG
37187600 TGAGCTTACT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 16 0.59
32 11 0.41
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.28
Consensus pattern (32 bp):
CCTTACCACTGTGTGAAACCTACCCATGTGAG
Found at i:37187747 original size:22 final size:22
Alignment explanation
Indices: 37187722--37187802 Score: 99
Period size: 22 Copynumber: 3.6 Consensus size: 22
37187712 ATTGTGTGAT
*
37187722 TGCCATGTGATATGTGAACCTA
1 TGCCATGTGATATGTGAACATA
*
37187744 TGCCATGTGATATGTGAACTTA
1 TGCCATGTGATATGTGAACATA
* * *
37187766 TGCTAAAGTGATATGCGAACATA
1 TGC-CATGTGATATGTGAACATA
*
37187789 TACCATGTGATATG
1 TGCCATGTGATATG
37187803 CAAACTATGA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
22 33 0.66
23 17 0.34
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (22 bp):
TGCCATGTGATATGTGAACATA
Found at i:37187803 original size:22 final size:21
Alignment explanation
Indices: 37187724--37187821 Score: 79
Period size: 22 Copynumber: 4.4 Consensus size: 21
37187714 TGTGTGATTG
* *
37187724 CCATGTGATATGTGAACCTATG
1 CCATGTGATATGCGAA-CTATA
* *
37187746 CCATGTGATATGTGAACTTATG
1 CCATGTGATATGCGAAC-TATA
* *
37187768 CTAAAGTGATATGCGAACATATA
1 C-CATGTGATATGCGAAC-TATA
*
37187791 CCATGTGATATGCAAACTATGA
1 CCATGTGATATGCGAACTAT-A
37187813 CCTATGTGA
1 CC-ATGTGA
37187822 GCTACATGAG
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
21 4 0.06
22 37 0.58
23 23 0.36
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (21 bp):
CCATGTGATATGCGAACTATA
Found at i:37189978 original size:32 final size:31
Alignment explanation
Indices: 37189942--37190003 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
37189932 AACCAATCCA
* *
37189942 ATTTTAAATATTAGAATATTTTATTTTATTTT
1 ATTTTAAATAATAGAATA-TGTATTTTATTTT
* *
37189974 ATTTTATATAATATAATATGTATTTTATTT
1 ATTTTAAATAATAGAATATGTATTTTATTT
37190004 CACATAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 11 0.42
32 15 0.58
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.61
Consensus pattern (31 bp):
ATTTTAAATAATAGAATATGTATTTTATTTT
Found at i:37195177 original size:23 final size:23
Alignment explanation
Indices: 37195147--37195193 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
37195137 CTCCGTATCT
37195147 ATCCAAGTTATTTATTTTTCCTA
1 ATCCAAGTTATTTATTTTTCCTA
37195170 ATCCAAGTTATTTATTTTTCCTA
1 ATCCAAGTTATTTATTTTTCCTA
37195193 A
1 A
37195194 AATACGCGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.04, T:0.51
Consensus pattern (23 bp):
ATCCAAGTTATTTATTTTTCCTA
Found at i:37197079 original size:30 final size:30
Alignment explanation
Indices: 37197045--37197104 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
37197035 AAGTTTAAAT
37197045 ATGAATGATCACACTTGAACATACCTAATA
1 ATGAATGATCACACTTGAACATACCTAATA
**
37197075 ATGAATGATCACACTTGAATGTACCTAATA
1 ATGAATGATCACACTTGAACATACCTAATA
37197105 TTTTAATAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (30 bp):
ATGAATGATCACACTTGAACATACCTAATA
Found at i:37203126 original size:27 final size:25
Alignment explanation
Indices: 37203094--37203168 Score: 80
Period size: 27 Copynumber: 2.9 Consensus size: 25
37203084 TAAAAACTTG
*
37203094 TTTTTAAAATTTAAAAATCATTAACA
1 TTTTTAAAATTTAAAAA-AATTAACA
* *
37203120 TTATTTAAAAGTATAAAAAAATTAATA
1 TT-TTTAAAA-TTTAAAAAAATTAACA
*
37203147 TTTTT-AAATTTTAAAAAATTAA
1 TTTTTAAAATTTAAAAAAATTAA
37203169 TTAAATATTA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
24 12 0.29
25 3 0.07
26 5 0.12
27 15 0.36
28 7 0.17
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (25 bp):
TTTTTAAAATTTAAAAAAATTAACA
Found at i:37203776 original size:29 final size:29
Alignment explanation
Indices: 37203744--37203823 Score: 88
Period size: 29 Copynumber: 2.8 Consensus size: 29
37203734 TATTTACCTC
* * * *
37203744 ATATTACATTTTAGTCATTTATATTTGAA
1 ATATTACGTTTTAGTCACTTACATTCGAA
* *
37203773 ATATTACGTTTTAGTTACTTACGTTCGAA
1 ATATTACGTTTTAGTCACTTACATTCGAA
* *
37203802 ATATTACGTTTTACTTACTTAC
1 ATATTACGTTTTAGTCACTTAC
37203824 GTTATCGTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.30, C:0.12, G:0.09, T:0.49
Consensus pattern (29 bp):
ATATTACGTTTTAGTCACTTACATTCGAA
Found at i:37203796 original size:15 final size:15
Alignment explanation
Indices: 37203776--37203826 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
37203766 ATTTGAAATA
*
37203776 TTACGTTTTAGTTAC
1 TTACGTTTTAATTAC
** *
37203791 TTACGTTCGAAATA-
1 TTACGTTTTAATTAC
*
37203805 TTACGTTTTACTTAC
1 TTACGTTTTAATTAC
37203820 TTACGTT
1 TTACGTT
37203827 ATCGTTCTGT
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.37
15 17 0.63
ACGTcount: A:0.24, C:0.16, G:0.12, T:0.49
Consensus pattern (15 bp):
TTACGTTTTAATTAC
Found at i:37203824 original size:29 final size:29
Alignment explanation
Indices: 37203770--37203826 Score: 105
Period size: 29 Copynumber: 2.0 Consensus size: 29
37203760 ATTTATATTT
*
37203770 GAAATATTACGTTTTAGTTACTTACGTTC
1 GAAATATTACGTTTTACTTACTTACGTTC
37203799 GAAATATTACGTTTTACTTACTTACGTT
1 GAAATATTACGTTTTACTTACTTACGTT
37203827 ATCGTTCTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.28, C:0.14, G:0.12, T:0.46
Consensus pattern (29 bp):
GAAATATTACGTTTTACTTACTTACGTTC
Found at i:37210768 original size:20 final size:19
Alignment explanation
Indices: 37210717--37210770 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
37210707 AATTAGATAA
37210717 TTATTATTTATTTAATATT
1 TTATTATTTATTTAATATT
* ** *
37210736 TTAATAAGATATTTATTATT
1 TT-ATTATTTATTTAATATT
37210756 TTATTATTTTATTTA
1 TTATTA-TTTATTTA
37210771 GTATATATAT
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (19 bp):
TTATTATTTATTTAATATT
Found at i:37214671 original size:12 final size:12
Alignment explanation
Indices: 37214656--37214680 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37214646 AGGGAAAGAA
37214656 AGAAAGAAAAAG
1 AGAAAGAAAAAG
37214668 AGAAAGAAAAAG
1 AGAAAGAAAAAG
37214680 A
1 A
37214681 AAGGAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (12 bp):
AGAAAGAAAAAG
Found at i:37217101 original size:13 final size:13
Alignment explanation
Indices: 37217083--37217107 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37217073 ATTGTAACAC
37217083 CCCTCGCCGGAAT
1 CCCTCGCCGGAAT
37217096 CCCTCGCCGGAA
1 CCCTCGCCGGAA
37217108 CAGGGTTCGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.24, T:0.12
Consensus pattern (13 bp):
CCCTCGCCGGAAT
Found at i:37217994 original size:45 final size:45
Alignment explanation
Indices: 37217891--37218522 Score: 840
Period size: 45 Copynumber: 14.1 Consensus size: 45
37217881 TTTTCTCAAA
* * * **
37217891 TCACTGGCATT-TCGCCTGCTAGGCTC-GAGGCCCG-ATGTCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* * * * ** *
37217933 TCACCAGCATTATAGCCTGTTAGGCTCGAAA-GTCTGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAACATT
* * *
37217978 TCACCGGCAGTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* * * * *
37218023 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCTGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
37218068 TCACCGGCATTATAGTCTGCTAGGCTCAAAGGCCAGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
*
37218113 TCACCGGCATTATAGCCTGCTAGCCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* * *
37218158 TCACCCGCATTATAACCTGTTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
37218203 TCACCCGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
** * *
37218248 TCACTAGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* * * * *
37218293 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCTGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
37218338 TCACCGGCATTATAGTCTGCTAGGCTCAAAGGCCAGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
* *
37218383 TCACCGGCATTATAGCCTGCTAGGGTCAAAAGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
*
37218428 TCACCGGCATTATAGCCTGCTAGCCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
*
37218473 TCACCCGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
37218518 TCACC
1 TCACC
37218523 TGTTCTTTCC
Statistics
Matches: 527, Mismatches: 58, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
42 9 0.02
43 13 0.02
44 6 0.01
45 499 0.95
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAACATT
Found at i:37223650 original size:14 final size:13
Alignment explanation
Indices: 37223619--37223653 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
37223609 ATTGACTCTC
*
37223619 TAAAAACAGACAT
1 TAAAAACAGAAAT
37223632 TAAAAACAGAAAT
1 TAAAAACAGAAAT
*
37223645 TGAAAACAG
1 TAAAAACAG
37223654 CTCAGCACGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.63, C:0.11, G:0.11, T:0.14
Consensus pattern (13 bp):
TAAAAACAGAAAT
Found at i:37224165 original size:88 final size:88
Alignment explanation
Indices: 37223669--37224150 Score: 948
Period size: 88 Copynumber: 5.5 Consensus size: 88
37223659 CACGTGAGCC
*
37223669 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
1 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
37223734 GAAAATACCTCGATATGTGACTG
66 GAAAATACCTCGATATGTGACTG
37223757 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
1 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
37223822 GAAAATACCTCGATATGTGACTG
66 GAAAATACCTCGATATGTGACTG
37223845 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
1 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
37223910 GAAAATACCTCGATATGTGACTG
66 GAAAATACCTCGATATGTGACTG
37223933 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
1 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
37223998 GAAAATACCTCGATATGTGACTG
66 GAAAATACCTCGATATGTGACTG
37224021 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
1 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
37224086 GAAAATACCTCGATATGTGACTG
66 GAAAATACCTCGATATGTGACTG
37224109 AAGGTTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAA
1 AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAA
37224151 AACAGAAATT
Statistics
Matches: 393, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
87 9 0.02
88 384 0.98
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (88 bp):
AAGGTTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTT
GAAAATACCTCGATATGTGACTG
Found at i:37224204 original size:47 final size:49
Alignment explanation
Indices: 37224151--37224244 Score: 147
Period size: 49 Copynumber: 2.0 Consensus size: 49
37224141 ATTTTTGAAA
*
37224151 AACAGAAATT-AAAAGA-CTCAGCGTGTCTTGAGGCTCAACTCATTTTG
1 AACAGAAATTGAAAAGACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
**
37224198 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTT
1 AACAGAAATTGAAAAGACCTCAACGTGTCTTGAGGCTCAACTCATTT
37224245 CTCGCAATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
47 10 0.24
48 4 0.10
49 28 0.67
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (49 bp):
AACAGAAATTGAAAAGACCTCAACGTGTCTTGAGGCTCAACTCATTTTG
Found at i:37224447 original size:72 final size:72
Alignment explanation
Indices: 37224198--37225293 Score: 1415
Period size: 72 Copynumber: 15.0 Consensus size: 72
37224188 ACTCATTTTG
* * **
37224198 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
37224263 TTTTTTTTTGAA
66 -----TTTTGAA
* * *
37224275 AGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATATAAGT
1 A-ACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
*
37224339 TGATTTTTTTGAA
62 TGA--ATTTTGAA
* * * **
37224352 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
37224417 TTTTGAA
66 TTTTGAA
* * **
37224424 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
37224489 TTTTGAA
66 TTTTGAA
* * **
37224496 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
37224561 TTTTGAA
66 TTTTGAA
* * **
37224568 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
37224633 TTTTGAA
66 TTTTGAA
* * *
37224640 AACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCTCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
37224705 TTTTTTGAA
65 -ATTTTGAA
* * * * ** *
37224714 AGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGA
1 A-ACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* *
37224779 TTTTTTTTTGAC
65 ----ATTTTGAA
*
37224791 AATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
*
37224856 TTTTAAA
66 TTTTGAA
* *
37224863 AACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
*
37224928 TTTTAAA
66 TTTTGAA
* *
37224935 AACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
*
37225000 TTTTAAA
66 TTTTGAA
* *
37225007 AACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
*
37225072 TTTTAAA
66 TTTTGAA
* *
37225079 AACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
*
37225144 TTTTAAA
66 TTTTGAA
* *
37225151 AACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
*
37225216 TTTTTTGAA
65 -ATTTTGAA
* * * * **
37225225 AGACAAAAATTGAAAATACCTCAGCACT-TCTTGAGGCTCAACTCATTTC-CGCAATATGAGTTG
1 A-ACAGAAATTGAAATTACCTCAGC-GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
37225288 ATTTTT
64 AATTTT
37225294 TTTTTACAGG
Statistics
Matches: 947, Mismatches: 56, Indels: 37
0.91 0.05 0.04
Matches are distributed among these distances:
72 638 0.67
73 1 0.00
74 63 0.07
75 93 0.10
76 78 0.08
77 19 0.02
78 21 0.02
80 33 0.03
81 1 0.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (72 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
TTTTGAA
Found at i:37224541 original size:144 final size:144
Alignment explanation
Indices: 37224198--37225964 Score: 1476
Period size: 144 Copynumber: 11.6 Consensus size: 144
37224188 ACTCATTTTG
* **
37224198 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* **
37224263 TTTTTTTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTC
66 -----TTTTGAAA-ACAGAAATTGAAATTACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTC
* *
37224328 GCAATATAAGTTGATTTTTTTGAA
123 GCAATATGAGTTGA--ATTTTGAA
* * **
37224352 AACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* ** **
37224417 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
37224482 AGTTGAATTTTGAA
131 AGTTGAATTTTGAA
* **
37224496 AACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* ** **
37224561 TTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
37224626 AGTTGAATTTTGAA
131 AGTTGAATTTTGAA
* * * *
37224640 AACAGAAATTGAAATTACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCTCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * * * ** ** *
37224705 TTTTTTGAAAGACAAAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAAT
65 -ATTTTGAAA-ACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAAT
* *
37224770 ATGAGTTGATTTTTTTTTGAC
128 ATGAGTTGA----ATTTTGAA
* *
37224791 AATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* *
37224856 TTTTAAAAACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
37224921 AGTTGAATTTTAAA
131 AGTTGAATTTTGAA
* * *
37224935 AACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* *
37225000 TTTTAAAAACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
37225065 AGTTGAATTTTAAA
131 AGTTGAATTTTGAA
* * *
37225079 AACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* *
37225144 TTTTAAAAACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
66 TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
*
37225209 AGTTGATTTTTTTGAA
131 AGTTGA--ATTTTGAA
* * * **
37225225 AGACAAAAATTGAAAATACCTCAGCAC-T-TCTTGAGGCTCAACTCATTTC-CGCAATATGAGTT
1 A-ACAGAAATTGAAATTACCTCA--ACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * * * * *
37225287 GATTTTTTTTTTACAGGCAGAAATTGAAATACGGAAATTGAAA-TACCTCGGCGTATGACCTGAT
63 GA-----ATTTT-------G------AAA-ACAGAAATTGAAATTACCTCAGCG--TGTCCCGAG
* * * * *
37225351 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGAC
107 GCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGAA
** *
37225390 AACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG-TCAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * * * *
37225454 TTTTTTTGAAAGGCAGAAATTGAAATACGGAAATTGAAATACCTCGGCGTATGACCTGATGCTCA
66 ---TTTTGAAA-ACAGAAA-T----T---GAAA-T----TACCTCAGCG--TGTCCCGAGGCTCA
* * * * *
37225519 ACTCGCCGCTCGCAATACGAGTTGATTTTTTGAC
112 ACTCACCTCTCGCAATATGAGTTGA-ATTTTGAA
**
37225553 AACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-
* * ** * * **
37225618 TTTTTTGAAAGGCAGAAATTGAAAAACAGAAATTGAAAATACCTTGGCATGTGACTAAGGCTCAA
65 ---ATT------------TTG-AAAACAGAAATTGAAATTACCTCAGCGTGT-CCCGAGGCTCAA
* * * * *
37225683 CTCGCCGCTCGCAATACGAGTTGATTTTTTGAC
113 CTCACCTCTCGCAATATGAGTTGA-ATTTTGAA
** *
37225716 AACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG-TCAA
1 AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
* * * * *
37225780 TTTTTTTGAAAGGCAGAAATTGAAATACGGAAATTGAAATACCTCGGCGTATGACCTGATGCTCA
66 ---TTTTGAAA-ACAGAAA-T----T---GAAA-T----TACCTCAGCG--TGTCCCGAGGCTCA
* * * *
37225845 ACTCGCCGCTCGCAATACGAGTTGATTTTTTTTGAA
112 ACTCACCTCTCGCAATATGAGTTGA---ATTTTGAA
*
37225881 AGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
1 A-ACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
37225946 TTTTTAAAAAGTAGAAATT
65 ATTTTGAAAA-CAGAAATT
37225965 ACAAGGTTCA
Statistics
Matches: 1408, Mismatches: 109, Indels: 187
0.83 0.06 0.11
Matches are distributed among these distances:
144 489 0.35
146 63 0.04
147 93 0.07
148 79 0.06
149 33 0.02
150 2 0.00
151 70 0.05
154 66 0.05
155 1 0.00
157 8 0.01
159 1 0.00
161 2 0.00
162 16 0.01
163 257 0.18
164 75 0.05
165 42 0.03
166 91 0.06
167 2 0.00
169 4 0.00
172 1 0.00
176 1 0.00
177 9 0.01
178 3 0.00
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (144 bp):
AACAGAAATTGAAATTACCTCAACGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAA
TTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
AGTTGAATTTTGAA
Found at i:37224929 original size:511 final size:512
Alignment explanation
Indices: 37224203--37225964 Score: 1924
Period size: 511 Copynumber: 3.3 Consensus size: 512
37224193 TTTTGAACAG
* * *
37224203 AAATTGAAATTACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTT
1 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTG-ATTTTT
*
37224268 TTTTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAA
65 TTTTGAAAGACAGAAATTGAAATTACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCGCAA
* * * * * *
37224332 TATAAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCAT
127 TATGAGTTGA-TTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCAC
* * *
37224397 TTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTTGAGGCTC
191 CTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTC
** * *
37224462 AACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTCTT
256 AACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCT
**
37224527 GAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
321 GAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAAC
**
37224592 GTGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
386 GTGTC-TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTA
* *
37224657 CCTCAGCATGTCCCGAGGCTCAACTCACCTCTCTCAATATGAGTTGATTTTTTTGAAAGACAA
450 CCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAA
*
37224720 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTGATTTTTT
1 AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
* * *
37224785 TTTGACA-ATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
66 TTTGAAAGACAGAAATTGAAATTACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
37224849 AGTTGA-ATTTTAAAAACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTC
131 AGTTGATTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
* * *
37224913 GCAATATGAGTTGAATTTTAAAAACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGCTCAACTC
196 GCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
* * *
37224978 ACCTCTCGCAATATGAGTTGAATTTTAAAAACAGAAATCGAAATTACCTCAGCGTGTCCCGAGGC
261 ACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
* * *
37225043 TCAACTCACCTCTCGCAATATGAGTTGAATTTTAAAAACAGAAATCGAAATTACCTCAGCGTGTC
326 TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGT-
* * *
37225108 CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTAAAAACAGAAATCGAAATTACCTCA
390 CTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCA
37225173 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAA
455 GCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAA
37225231 AAATTGAAAATACCTCAGCACT-TCTTGAGGCTCAACTCATTTC-CGCAATATGAGTTGATTTTT
1 AAATTGAAAATACCTCAGCA-TGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTT
* * *
37225294 TTTTTACAGGCAGAAATTGAAATACGGAAATTGAAA-TACCTCGGCGTATGACCTGATGCTCAAC
64 TTTTT-------GAAA--G----ACAGAAATTGAAATTACCTCAGCG--TGACCTGAGGCTCAAC
* * * * * *
37225358 TCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCCTGA
114 TCACCTCTCGCAATATGAGTTGATTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGA
* *
37225423 GGCTCAACTCACCTCTCGCAATATGAG-TCAATTTTTTTGAAAGGCAGAAATTGAAATACGGAAA
179 GGCTCAACTCACCTCTCGCAATATGAGTTGAA---TTTTGAAA-ACAGAAA-T----T---GAAA
* * * * * * *
37225487 TTGAAATACCTCGGCGTATGACCTGATGCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGA
232 -T----TACCTCAGCG--TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-ATTTTGA
* *
37225552 CAACAGAAATTGAAATTACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
289 AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * * *
37225617 TTTTTTTGAAAGGCAGAAATTGAAAAACAGAAATTGAAAATACCTTGGC-ATGTGACTAAGGCTC
354 ----ATT------------TTG-AAAACAGAAATTGAAATTACC-T--CAACGTGTCTGAGGCTC
* * * * * *
37225681 AACTCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGTGTGTCC
399 AACTCACCTCTCGCAATATGAGTTGA-ATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCC
* ** *
37225746 TGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAA
463 CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAA-G-A-CAA
* * * * * **** *
37225799 TTGAAATACGGAAATTGAAATACCTCGGCGTATGACCTGATGCTCAACTCGCCGCTCGCAATACG
1 ---AAAT--TG--A---AAATACCTCAGC--ATGTCTTGAGGCTCAACTCATTTCTCGCAATATG
*
37225864 AGTTGA-TTTTTTTTGAAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACC
54 AGTTGATTTTTTTTTGAAAGACAGAAATTGAAATTACCTCAGCGTGACCTGAGGCTCAACTCACC
*
37225928 TCTCGCAATATGAGTTGA-TTTTTAAAAAGTAGAAATT
119 TCTCGCAATATGAGTTGATTTTTTAAAAA-CAGAAATT
37225965 ACAAGGTTCA
Statistics
Matches: 1048, Mismatches: 116, Indels: 114
0.82 0.09 0.09
Matches are distributed among these distances:
510 14 0.01
511 391 0.37
512 4 0.00
513 35 0.03
515 21 0.02
516 13 0.01
517 54 0.05
518 3 0.00
524 9 0.01
525 11 0.01
526 37 0.04
527 62 0.06
529 7 0.01
530 6 0.01
531 1 0.00
538 4 0.00
539 1 0.00
543 9 0.01
545 33 0.03
546 66 0.06
550 2 0.00
562 2 0.00
563 19 0.02
564 39 0.04
565 119 0.11
566 14 0.01
567 10 0.01
568 2 0.00
570 1 0.00
571 4 0.00
572 4 0.00
573 1 0.00
575 1 0.00
578 11 0.01
579 9 0.01
580 15 0.01
581 14 0.01
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (512 bp):
AAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTT
TTTGAAAGACAGAAATTGAAATTACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTTAAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTC
GCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGC
TCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAACGTGTC
TGAGGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTGAAAACAGAAATTGAAATTACCTCAG
CGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAA
Found at i:37225325 original size:14 final size:14
Alignment explanation
Indices: 37225306--37225332 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37225296 TTTACAGGCA
37225306 GAAATTGAAATACG
1 GAAATTGAAATACG
37225320 GAAATTGAAATAC
1 GAAATTGAAATAC
37225333 CTCGGCGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
GAAATTGAAATACG
Found at i:37225493 original size:14 final size:14
Alignment explanation
Indices: 37225469--37225495 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37225459 TTGAAAGGCA
37225469 GAAATTGAAATACG
1 GAAATTGAAATACG
37225483 GAAATTGAAATAC
1 GAAATTGAAATAC
37225496 CTCGGCGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
GAAATTGAAATACG
Found at i:37225494 original size:163 final size:163
Alignment explanation
Indices: 37225185--37225942 Score: 1180
Period size: 163 Copynumber: 4.6 Consensus size: 163
37225175 GTGTCCCGAG
* * * * * *
37225185 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGACAAAAATTGAAAATACCTCAGC
1 GCTCAACTCGCCGCTCGCAATACGAGTTGA-TTTTTTGACA-ACAGAAATTGAAATTACCTCAG-
** * ** * * * *
37225250 ACT-TCTTGAGGCTCAACTCATTTC-CGCAATATGAGTTGATTTTTTTTTTACAGGCAGAAATTG
63 TGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG-TCA-ATTTTTTTGAAAGGCAGAAATTG
37225313 AAATACGGAAATTGAAATACCTCGGCGTATGACCTGAT
126 AAATACGGAAATTGAAATACCTCGGCGTATGACCTGAT
37225351 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGTGT
1 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGTGT
37225416 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAATA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAATA
37225481 CGGAAATTGAAATACCTCGGCGTATGACCTGAT
131 CGGAAATTGAAATACCTCGGCGTATGACCTGAT
37225514 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGTGT
1 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGTGT
** *
37225579 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAAAA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAATA
* * * * * *
37225644 CAGAAATTGAAAATACCTTGGCATGTGA-CTAAG
131 CGGAAATTG-AAATACCTCGGCGTATGACCTGAT
37225677 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGTGT
1 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGTGT
37225742 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAATA
66 GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAATA
37225807 CGGAAATTGAAATACCTCGGCGTATGACCTGAT
131 CGGAAATTGAAATACCTCGGCGTATGACCTGAT
*
37225840 GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTTTGAAAGACAGAAATTGAAATTACCTCAG
1 GCTCAACTCGCCGCTCGCAATACGAGTTGA--TTTTTTGACA-ACAGAAATTGAAATTACCTCAG
*
37225905 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
63 TGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
37225943 TGATTTTTAA
Statistics
Matches: 550, Mismatches: 35, Indels: 14
0.92 0.06 0.02
Matches are distributed among these distances:
162 15 0.03
163 365 0.66
164 55 0.10
165 29 0.05
166 86 0.16
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (163 bp):
GCTCAACTCGCCGCTCGCAATACGAGTTGATTTTTTGACAACAGAAATTGAAATTACCTCAGTGT
GTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAATA
CGGAAATTGAAATACCTCGGCGTATGACCTGAT
Found at i:37225604 original size:73 final size:74
Alignment explanation
Indices: 37225508--37225805 Score: 232
Period size: 73 Copynumber: 3.8 Consensus size: 74
37225498 CGGCGTATGA
* *
37225508 CCTGATGCTCAACTCGCCGCTCGCAATACGAGTTGA-TTTTTTGACAA-CAGAAATTGAAATTAC
1 CCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTGA-AAGCAGAAATTGAAATTAC
37225571 CTCAGTGTGT
65 CTCAGTGTGT
* * *
37225581 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAGGCAGAAATTGAAA-AAC
1 CCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTGAAA-GCAGAAATTGAAATTAC
*** *
37225645 AGAAAT-TGAAAAT
65 CTCAGTGTG----T
37225658 ACCTTGGCATGTGACT-AAGGCTCAACTCGCCGCTCGCAATACGAGTTGA-TTTTTTGACAA-CA
1 -CC-T-G-A-G-G-CTCAA--CTC-A----CCGCTCGCAATACGAGTTGATTTTTTTGA-AAGCA
37225720 GAAATTGAAATTACCTCAGTGTGT
51 GAAATTGAAATTACCTCAGTGTGT
* * **
37225744 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTCAATTTTTTTGAAAGGCAGAAATTGAAAT
1 CCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTGAAA-GCAGAAATTGAAAT
37225806 ACGGAAATTG
Statistics
Matches: 177, Mismatches: 20, Indels: 54
0.71 0.08 0.22
Matches are distributed among these distances:
73 54 0.31
74 20 0.11
75 25 0.14
77 2 0.01
78 5 0.03
79 3 0.02
80 4 0.02
81 2 0.01
82 2 0.01
83 4 0.02
84 3 0.02
85 5 0.03
86 2 0.01
88 12 0.07
89 12 0.07
90 22 0.12
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (74 bp):
CCTGAGGCTCAACTCACCGCTCGCAATACGAGTTGATTTTTTTGAAAGCAGAAATTGAAATTACC
TCAGTGTGT
Found at i:37225641 original size:14 final size:14
Alignment explanation
Indices: 37225630--37225656 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37225620 TTTTGAAAGG
37225630 CAGAAATTGAAAAA
1 CAGAAATTGAAAAA
37225644 CAGAAATTGAAAA
1 CAGAAATTGAAAA
37225657 TACCTTGGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.15, T:0.15
Consensus pattern (14 bp):
CAGAAATTGAAAAA
Found at i:37225819 original size:14 final size:14
Alignment explanation
Indices: 37225795--37225821 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37225785 TTGAAAGGCA
37225795 GAAATTGAAATACG
1 GAAATTGAAATACG
37225809 GAAATTGAAATAC
1 GAAATTGAAATAC
37225822 CTCGGCGTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
GAAATTGAAATACG
Found at i:37225933 original size:76 final size:76
Alignment explanation
Indices: 37225799--37225950 Score: 207
Period size: 76 Copynumber: 2.0 Consensus size: 76
37225789 AAGGCAGAAA
* * * * *
37225799 TTGAAATACGGAAATTGAAATACCTCGGCGTATGACCTGATGCTCAACTCGCCGCTCGCAATACG
1 TTGAAAGACAGAAATTGAAATACCTCAGCG-ATGACCTGAGGCTCAACTCACCGCTCGCAATACG
37225864 AGTTGATTTTTT
65 AGTTGATTTTTT
* * *
37225876 TTGAAAGACAGAAATTGAAATTACCTCAGCG-TGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAGACAGAAATTGAAA-TACCTCAGCGATGACCTGAGGCTCAACTCACCGCTCGCAATACG
37225940 AGTTGATTTTT
65 AGTTGATTTTT
37225951 AAAAAGTAGA
Statistics
Matches: 66, Mismatches: 8, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
76 39 0.59
77 18 0.27
78 9 0.14
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (76 bp):
TTGAAAGACAGAAATTGAAATACCTCAGCGATGACCTGAGGCTCAACTCACCGCTCGCAATACGA
GTTGATTTTTT
Found at i:37226134 original size:139 final size:141
Alignment explanation
Indices: 37225876--37226135 Score: 409
Period size: 139 Copynumber: 1.9 Consensus size: 141
37225866 TTGATTTTTT
* * *
37225876 TTGAAAGACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAGACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
* * *
37225941 GTTGATTTTTAAAAAGTAGAAATTACAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
37226006 AACAACATAAA
131 AACAACATAAA
* *
37226017 TTGAAA-ACAGAAATTAAAAATACCTCAGCGTGACCTG-GGCTCAACTCACCTCTCGTAATATGG
1 TTGAAAGACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
*
37226080 GCTGATTTTGAAAAAGTAGAAATTAAAAGGCTT-AACTCACCTCTCGCAATATGAGT
66 GCTGATTTTGAAAAAGTAGAAATTAAAAGG-TTCAACCCACCTCTCGCAATATGAGT
37226136 CAATTTAAAA
Statistics
Matches: 109, Mismatches: 9, Indels: 4
0.89 0.07 0.03
Matches are distributed among these distances:
139 73 0.67
140 30 0.28
141 6 0.06
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (141 bp):
TTGAAAGACAGAAATTAAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCGCAATATGA
GCTGATTTTGAAAAAGTAGAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTTG
AACAACATAAA
Found at i:37226250 original size:71 final size:70
Alignment explanation
Indices: 37226107--37226282 Score: 221
Period size: 71 Copynumber: 2.5 Consensus size: 70
37226097 AGAAATTAAA
* * * * * *
37226107 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAATTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
37226171 CCCCG
66 CCCCG
37226176 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAATTAAAAATACCTCAACGT
* **
37226241 GTCTTG
65 GCCCCG
* *
37226247 AGGCCCAACTCA-TCTCTTGCAATATGAGTTGATTTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTTT
37226283 CCTTGAAAAG
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 61 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAATTAAAAATACCTCAACGTG
CCCCG
Found at i:37236566 original size:18 final size:18
Alignment explanation
Indices: 37236540--37236590 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
37236530 AAGTGGCTAG
37236540 GGGTTTTTTTGGGGGTTA
1 GGGTTTTTTTGGGGGTTA
* ****
37236558 GGTTTTTTTTTTTTGTTA
1 GGGTTTTTTTGGGGGTTA
37236576 GGGTTTTTTTGGGGG
1 GGGTTTTTTTGGGGG
37236591 CTTAATGGGC
Statistics
Matches: 23, Mismatches: 10, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.04, C:0.00, G:0.37, T:0.59
Consensus pattern (18 bp):
GGGTTTTTTTGGGGGTTA
Found at i:37239698 original size:49 final size:49
Alignment explanation
Indices: 37239645--37239876 Score: 245
Period size: 49 Copynumber: 4.7 Consensus size: 49
37239635 CTGGTACGCA
* *
37239645 TAGTAGTCTACACTTAGTACTACACATGCGACC-AATTATTC-GGTACACG
1 TAGTAG-CTGCACTTAGTACTACACATGTGACCGAATTA-TCGGGTACACG
* * ** * *
37239694 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAG-CTGCACTTAGTACTACACATGTGACCGAATTATCGGGTACACG
** * *
37239744 TAGTAGCTTGCACTTAGTACTACACACATGACCGAAGTTATCGGGTACGCA
1 TAGTAGC-TGCACTTAGTACTACACATGTGACCGAA-TTATCGGGTACACG
* **
37239795 TAGTAGCTTGCACTTAGTACTACACATGCGACC-AATTATCCAGTACACG
1 TAGTAGC-TGCACTTAGTACTACACATGTGACCGAATTATCGGGTACACG
37239844 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAG-CTGCACTTAGTACTACACATGTGACC
37239877 TCACAATAGA
Statistics
Matches: 155, Mismatches: 23, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
49 72 0.46
50 45 0.29
51 38 0.25
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCTGCACTTAGTACTACACATGTGACCGAATTATCGGGTACACG
Found at i:37239810 original size:101 final size:98
Alignment explanation
Indices: 37239645--37239869 Score: 265
Period size: 101 Copynumber: 2.3 Consensus size: 98
37239635 CTGGTACGCA
* * ** *
37239645 TAGTAGTCTACACTTAGTACTACACATGCGACCAATTATTCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATTCGGTACACATAGTAGCCTGCACTTA
* *
37239710 GTACTACACACGTGACCTAACCAT-CTGATACACG
66 GTACTACACACGCGACC-AACCATCCAG-TACACG
* * * *
37239744 TAGTAGCTTGCACTTAGTACTACACACATGACCGAAGTTA-TCGGGTACGCATAGTAGCTTGCAC
1 TAGTAGCCTGCACTTAGTACTACACACACGACC-AA-TTATTC-GGTACACATAGTAGCCTGCAC
* **
37239808 TTAGTACTACACATGCGACCAATTATCCAGTACACG
63 TTAGTACTACACACGCGACCAACCATCCAGTACACG
37239844 TAGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
37239870 TGTGACCTCA
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
99 27 0.25
100 39 0.36
101 41 0.38
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTACACACACGACCAATTATTCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCAGTACACG
Found at i:37248834 original size:6 final size:6
Alignment explanation
Indices: 37248819--37248881 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
37248809 AGAATCAAAC
* ** *
37248819 AAAATA AAAATT AAAATGT AACAATT -AAATT AAAAAC AAAA-- AATATT
1 AAAATT AAAATT AAAAT-T AA-AATT AAAATT AAAATT AAAATT AAAATT
37248866 AAAATT AAAATT AAAA
1 AAAATT AAAATT AAAA
37248882 AAGGTTAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
4 3 0.06
5 4 0.09
6 33 0.70
7 4 0.09
8 3 0.06
ACGTcount: A:0.70, C:0.03, G:0.02, T:0.25
Consensus pattern (6 bp):
AAAATT
Found at i:37248889 original size:22 final size:21
Alignment explanation
Indices: 37248842--37248894 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
37248832 AAATGTAACA
*
37248842 ATTAAATTAAAAACAAAAAAT
1 ATTAAATTAAAAACAAAAAAG
**
37248863 ATTAAAATTAAAATTAAAAAAG
1 ATT-AAATTAAAAACAAAAAAG
*
37248885 GTTAAATTAA
1 ATTAAATTAA
37248895 TAGAAATAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.66, C:0.02, G:0.04, T:0.28
Consensus pattern (21 bp):
ATTAAATTAAAAACAAAAAAG
Found at i:37252037 original size:141 final size:141
Alignment explanation
Indices: 37251798--37252055 Score: 385
Period size: 141 Copynumber: 1.8 Consensus size: 141
37251788 CGACTGTCTC
* * *
37251798 CTTGCCTTTCTCTATGGCATGCCCGAGAAGAGTTTGGAGCTAGTGGTCGGAAGCGAAGCAAGCAA
1 CTTGCCTTTCTCTATGGCATGCCCAAGAAGAGTTTGGAGCTAGTGGCCAGAAGCGAAGCAAGCAA
**
37251863 TAGAGGCTAGGTGAGAAGGGCTATCGGGTTGAGTAACAAAGGTTTCAGAATGAAGAAAAACAGAG
66 TAGAGGCTAGGTGAGAAGGGCTATCAAGTTGAGTAACAAAGGTTTCAGAATGAAGAAAAACAGAG
37251928 GCAGCTCTCTT
131 GCAGCTCTCTT
* * * *
37251939 CTTGCCTTTCTTTATGGCATGCCCAAGAAGAGTTTGGGGCTAGTGGCCAGAGGCGAAGCAAGTAA
1 CTTGCCTTTCTCTATGGCATGCCCAAGAAGAGTTTGGAGCTAGTGGCCAGAAGCGAAGCAAGCAA
* *
37252004 TAGAGGCT-GAGTGAG-AGAGGCTATCAAGTTGAGTGAGAAAGGTTTCAGAATG
66 TAGAGGCTAG-GTGAGAAG-GGCTATCAAGTTGAGTAACAAAGGTTTCAGAATG
37252056 GTGAGGGTAA
Statistics
Matches: 104, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
140 3 0.03
141 101 0.97
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.23
Consensus pattern (141 bp):
CTTGCCTTTCTCTATGGCATGCCCAAGAAGAGTTTGGAGCTAGTGGCCAGAAGCGAAGCAAGCAA
TAGAGGCTAGGTGAGAAGGGCTATCAAGTTGAGTAACAAAGGTTTCAGAATGAAGAAAAACAGAG
GCAGCTCTCTT
Found at i:37258703 original size:43 final size:43
Alignment explanation
Indices: 37258654--37258807 Score: 193
Period size: 43 Copynumber: 3.6 Consensus size: 43
37258644 ATTTAAAAAA
** * *
37258654 GCCGCTAAAGGTCATGATTTTTAGCGGCATTTGCGGGAAAAGC
1 GCCGCTAAAGACCATGGTCTTTAGCGGCATTTGCGGGAAAAGC
37258697 GCCGCTAAAGACCATGGTCTTTAGCGGCATTTGCGGGAAAAGC
1 GCCGCTAAAGACCATGGTCTTTAGCGGCATTTGCGGGAAAAGC
* * * *
37258740 GCCACTAAAGACCATGGCCTTTAGAGGCATTTGTGGCG-AAAGC
1 GCCGCTAAAGACCATGGTCTTTAGCGGCATTTGCGG-GAAAAGC
** *
37258783 GCCGCTAAAGGTCTTGGTCTTTAGC
1 GCCGCTAAAGACCATGGTCTTTAGC
37258808 AGCGTTTATT
Statistics
Matches: 96, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
43 95 0.99
44 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (43 bp):
GCCGCTAAAGACCATGGTCTTTAGCGGCATTTGCGGGAAAAGC
Found at i:37262577 original size:17 final size:18
Alignment explanation
Indices: 37262544--37262577 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37262534 TATCTCTTAA
37262544 ATAATTTAAACTATATTG
1 ATAATTTAAACTATATTG
*
37262562 ATAATTTTAA-TATATT
1 ATAATTTAAACTATATT
37262578 AAAACAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (18 bp):
ATAATTTAAACTATATTG
Found at i:37263016 original size:14 final size:14
Alignment explanation
Indices: 37262999--37263030 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
37262989 GTAAAACAAA
37262999 AAACTACAAACTCT
1 AAACTACAAACTCT
*
37263013 AAACTATAAACTCT
1 AAACTACAAACTCT
37263027 AAAC
1 AAAC
37263031 CAAAAACAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.53, C:0.25, G:0.00, T:0.22
Consensus pattern (14 bp):
AAACTACAAACTCT
Found at i:37263711 original size:41 final size:41
Alignment explanation
Indices: 37263666--37263773 Score: 182
Period size: 41 Copynumber: 2.6 Consensus size: 41
37263656 TTAATTTTTT
*
37263666 GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGATCTATA
1 GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATA
37263707 GCGGCG-TTTTTCTAAAAGCGCCGCTAAAACCTCGACCTATA
1 GCGGCGTTTTTTC-AAAAGCGCCGCTAAAACCTCGACCTATA
*
37263748 GCGGCGTTTTTCCAAAAGCGCCGCTA
1 GCGGCGTTTTTTCAAAAGCGCCGCTA
37263774 TTGTTCAGTT
Statistics
Matches: 63, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
40 6 0.10
41 52 0.83
42 5 0.08
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (41 bp):
GCGGCGTTTTTTCAAAAGCGCCGCTAAAACCTCGACCTATA
Found at i:37263858 original size:12 final size:12
Alignment explanation
Indices: 37263843--37263867 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
37263833 TTTTTTGTTC
37263843 AAACGCCACTAA
1 AAACGCCACTAA
37263855 AAACGCCACTAA
1 AAACGCCACTAA
37263867 A
1 A
37263868 GCCCTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.32, G:0.08, T:0.08
Consensus pattern (12 bp):
AAACGCCACTAA
Found at i:37272171 original size:21 final size:21
Alignment explanation
Indices: 37272138--37272178 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37272128 CAACGTGGCA
*
37272138 AGTTACTTGGCCATATCAGCT
1 AGTTACTTGGCCACATCAGCT
37272159 AGTTAACTT-GCCACATCAGC
1 AGTT-ACTTGGCCACATCAGC
37272179 GGTCCAGTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (21 bp):
AGTTACTTGGCCACATCAGCT
Found at i:37273647 original size:20 final size:20
Alignment explanation
Indices: 37273622--37273689 Score: 63
Period size: 21 Copynumber: 3.5 Consensus size: 20
37273612 TCTTTAGATT
37273622 TTTTTTTAAAATTATTATAA
1 TTTTTTTAAAATTATTATAA
37273642 TTTTTTTTAAAA--A-TATAA
1 -TTTTTTTAAAATTATTATAA
*
37273660 TTTTTTTGGAAATT-TTATAA
1 TTTTTTT-AAAATTATTATAA
* *
37273680 ATATTTTAAA
1 TTTTTTTAAA
37273690 TATTTTAAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
17 7 0.18
18 8 0.21
19 3 0.08
20 10 0.26
21 11 0.28
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
TTTTTTTAAAATTATTATAA
Found at i:37273967 original size:24 final size:24
Alignment explanation
Indices: 37273940--37273990 Score: 93
Period size: 24 Copynumber: 2.1 Consensus size: 24
37273930 AGTTTTACCC
37273940 ACCTTAAATTTCTCAATAAAGTAT
1 ACCTTAAATTTCTCAATAAAGTAT
*
37273964 ACCTTAAATTTCTTAATAAAGTAT
1 ACCTTAAATTTCTCAATAAAGTAT
37273988 ACC
1 ACC
37273991 AAAATAAGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.41, C:0.18, G:0.04, T:0.37
Consensus pattern (24 bp):
ACCTTAAATTTCTCAATAAAGTAT
Found at i:37293630 original size:45 final size:43
Alignment explanation
Indices: 37293559--37293665 Score: 146
Period size: 45 Copynumber: 2.5 Consensus size: 43
37293549 AGTAAAAATG
37293559 AAATTATTAATTAAA-A-TAAAAAATTATTAATTAAAACAAAA
1 AAATTATTAATTAAATATTAAAAAATTATTAATTAAAACAAAA
*
37293600 AAATTATTAATTAAATATTAAAAACCATTATTAATTAAAATAAAA
1 AAATTATTAATTAAATATTAAAAA--ATTATTAATTAAAACAAAA
* *
37293645 AAATTATGAATAACAATATTA
1 AAATTATTAATTA-AATATTA
37293666 TTATTTAGGA
Statistics
Matches: 58, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
41 15 0.26
42 1 0.02
43 6 0.10
45 29 0.50
46 7 0.12
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.34
Consensus pattern (43 bp):
AAATTATTAATTAAATATTAAAAAATTATTAATTAAAACAAAA
Found at i:37293662 original size:21 final size:21
Alignment explanation
Indices: 37293559--37293651 Score: 134
Period size: 21 Copynumber: 4.3 Consensus size: 21
37293549 AGTAAAAATG
37293559 AAATTATTAATTAAAAT-AAA
1 AAATTATTAATTAAAATAAAA
*
37293579 AAATTATTAATTAAAACAAAA
1 AAATTATTAATTAAAATAAAA
37293600 AAATTATTAATTAAATATTAAAA
1 AAATTATTAATTAAA-A-TAAAA
*
37293623 ACCATTATTAATTAAAATAAAA
1 A-AATTATTAATTAAAATAAAA
37293645 AAATTAT
1 AAATTAT
37293652 GAATAACAAT
Statistics
Matches: 65, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
20 16 0.25
21 23 0.35
22 7 0.11
23 6 0.09
24 13 0.20
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.34
Consensus pattern (21 bp):
AAATTATTAATTAAAATAAAA
Found at i:37299880 original size:15 final size:16
Alignment explanation
Indices: 37299862--37299891 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
37299852 AAACTCTTAT
37299862 AATCATAA-CTTACTC
1 AATCATAATCTTACTC
37299877 AATCATAATCTTACT
1 AATCATAATCTTACT
37299892 AAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (16 bp):
AATCATAATCTTACTC
Found at i:37300203 original size:41 final size:42
Alignment explanation
Indices: 37300067--37300217 Score: 205
Period size: 43 Copynumber: 3.6 Consensus size: 42
37300057 ATACCAATGT
* * *
37300067 CATATCCCATATATGGTCTTACATGTAATCTCATATCGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* * * *
37300109 CAATAGCCCAGTTATGGTTTTACACGAAATCTCATATCGACGC
1 C-ATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
* *
37300152 CATATCCCAGATATAGTCTTACACGAAATCCCATA-CGATGC
1 CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
37300193 CATATCCCAGATATGGTCTTACACG
1 CATATCCCAGATATGGTCTTACACG
37300218 TAGTCTTAGT
Statistics
Matches: 94, Mismatches: 14, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
41 29 0.31
42 30 0.32
43 35 0.37
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.29
Consensus pattern (42 bp):
CATATCCCAGATATGGTCTTACACGAAATCTCATATCGATGC
Found at i:37310065 original size:21 final size:21
Alignment explanation
Indices: 37310040--37310108 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
37310030 TATAATGATT
37310040 ATTATTATGGTTTTATATTAA
1 ATTATTATGGTTTTATATTAA
**
37310061 ATTATTATAATTATTA-ATT-A
1 ATTATTATGGTT-TTATATTAA
* *
37310081 A-CATTATGGTTTTATATTAG
1 ATTATTATGGTTTTATATTAA
37310101 ATTATTAT
1 ATTATTAT
37310109 TATTAGCATT
Statistics
Matches: 37, Mismatches: 7, Indels: 8
0.71 0.13 0.15
Matches are distributed among these distances:
18 3 0.08
19 10 0.27
20 3 0.08
21 18 0.49
22 3 0.08
ACGTcount: A:0.36, C:0.01, G:0.07, T:0.55
Consensus pattern (21 bp):
ATTATTATGGTTTTATATTAA
Found at i:37310121 original size:15 final size:14
Alignment explanation
Indices: 37310095--37310125 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
37310085 TATGGTTTTA
37310095 TATTAGATTATTAT
1 TATTAGATTATTAT
37310109 TATTAGCATTATTAT
1 TATTAG-ATTATTAT
37310124 TA
1 TA
37310126 AATAAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.35, C:0.03, G:0.06, T:0.55
Consensus pattern (14 bp):
TATTAGATTATTAT
Found at i:37316037 original size:13 final size:12
Alignment explanation
Indices: 37316000--37316052 Score: 58
Period size: 13 Copynumber: 4.4 Consensus size: 12
37315990 CCTTTTAATG
37316000 ATTTT-TTATTT
1 ATTTTATTATTT
37316011 CATTTTA-T-TTT
1 -ATTTTATTATTT
37316022 ATTTTATTACTTT
1 ATTTTATTA-TTT
37316035 ATTATTATTATTT
1 ATT-TTATTATTT
37316048 ATTTT
1 ATTTT
37316053 CCTGTTTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
10 6 0.17
11 4 0.11
12 8 0.22
13 12 0.33
14 6 0.17
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.74
Consensus pattern (12 bp):
ATTTTATTATTT
Found at i:37320184 original size:4 final size:4
Alignment explanation
Indices: 37320175--37320252 Score: 147
Period size: 4 Copynumber: 19.5 Consensus size: 4
37320165 TATTTTGCAA
*
37320175 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37320223 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
37320253 GTTTGTACTG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
4 72 1.00
ACGTcount: A:0.49, C:0.24, G:0.01, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:37324683 original size:2 final size:2
Alignment explanation
Indices: 37324678--37324703 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37324668 AAAATCAAGC
37324678 GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA
37324704 ACAATGATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:37326740 original size:5 final size:5
Alignment explanation
Indices: 37326730--37326771 Score: 66
Period size: 5 Copynumber: 8.4 Consensus size: 5
37326720 TTATGTTTTA
* *
37326730 ATTAT ATTAT ATTAT ATTAT GTTAT ATTAT GTTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
37326772 ATAAACTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (5 bp):
ATTAT
Found at i:37327877 original size:47 final size:46
Alignment explanation
Indices: 37327758--37327879 Score: 127
Period size: 47 Copynumber: 2.6 Consensus size: 46
37327748 AGACCTTGAG
* * *
37327758 TCGATGAGGCACTATAAGTGTCGTTCTGTTACTGTTACTTCGATATAA
1 TCGATGAGGCAC--TAAGTGTCGTACTGTTACTGTTACTTCGACAAAA
* * * * *
37327806 TCCGATGAGGTATTGAGTATCGTACTGTTACTGTTTACTTCGGCAAAA
1 T-CGATGAGGCACTAAGTGTCGTACTGTTACTG-TTACTTCGACAAAA
*
37327854 TCGATGAGGCACTAAGTGCCGTACTG
1 TCGATGAGGCACTAAGTGTCGTACTG
37327880 GTGTCTTGGT
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
47 37 0.63
48 13 0.22
49 9 0.15
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.34
Consensus pattern (46 bp):
TCGATGAGGCACTAAGTGTCGTACTGTTACTGTTACTTCGACAAAA
Found at i:37333330 original size:5 final size:5
Alignment explanation
Indices: 37333320--37333346 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
37333310 TTATGTTTTA
37333320 ATTAT ATTAT ATTAT ATTAT ATTAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT AT
37333347 ATAAACTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:37334606 original size:20 final size:20
Alignment explanation
Indices: 37334569--37334606 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37334559 TGATGGGGAG
*
37334569 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
37334589 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
37334607 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:37336539 original size:16 final size:16
Alignment explanation
Indices: 37336518--37336553 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
37336508 AATGTGTAAG
37336518 ACCAGGGTTGAAAGAT
1 ACCAGGGTTGAAAGAT
37336534 ACCAGGGTTGAAAGAT
1 ACCAGGGTTGAAAGAT
37336550 ACCA
1 ACCA
37336554 TGGCAACCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.17, G:0.28, T:0.17
Consensus pattern (16 bp):
ACCAGGGTTGAAAGAT
Found at i:37336574 original size:62 final size:62
Alignment explanation
Indices: 37336472--37336599 Score: 213
Period size: 62 Copynumber: 2.1 Consensus size: 62
37336462 AATGTGTAAG
* *
37336472 ACCATGGTTGAAAGATACCAATGCAGCCTGATATGAAATGTGTAAGACCAGGGTTGAAAGAT
1 ACCAGGGTTGAAAGATACCAATGCAACCTGATATGAAATGTGTAAGACCAGGGTTGAAAGAT
*
37336534 ACCAGGGTTGAAAGATACC-ATGGCAACCTGATATGAAATGTGTAAGACCATGGTTGAAAGAT
1 ACCAGGGTTGAAAGATACCAAT-GCAACCTGATATGAAATGTGTAAGACCAGGGTTGAAAGAT
37336596 ACCA
1 ACCA
37336600 TGGCAGCCTG
Statistics
Matches: 62, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
61 2 0.03
62 60 0.97
ACGTcount: A:0.38, C:0.16, G:0.25, T:0.22
Consensus pattern (62 bp):
ACCAGGGTTGAAAGATACCAATGCAACCTGATATGAAATGTGTAAGACCAGGGTTGAAAGAT
Found at i:37336610 original size:46 final size:46
Alignment explanation
Indices: 37336534--37336742 Score: 294
Period size: 46 Copynumber: 4.5 Consensus size: 46
37336524 GTTGAAAGAT
* *
37336534 ACCAGGGTTGAAAGATACCATGGCAACCTGATATGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAG
* *
37336580 ACCATGGTTGAAAGATACCATGGCAGCCTGATATGAAATGTGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAG
* **
37336626 ACCATGGTTGAAAGATACCATGGCAACGTGATATGAAATGAACAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAG
* *
37336672 ACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAG
1 ACCATGGTTGAAAGATACCATGGCAACCTGATATG-AAATGAGTAAG
* * *
37336718 ACCATAGTTGAAAGACACTATGGCA
1 ACCATGGTTGAAAGATACCATGGCA
37336743 TCATGTCAAA
Statistics
Matches: 148, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
45 1 0.01
46 147 0.99
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.21
Consensus pattern (46 bp):
ACCATGGTTGAAAGATACCATGGCAACCTGATATGAAATGAGTAAG
Found at i:37346757 original size:29 final size:29
Alignment explanation
Indices: 37346724--37346786 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
37346714 GTAATTGAGC
37346724 TTGTAAATATGTTAAATTGAATGTTGTGT
1 TTGTAAATATGTTAAATTGAATGTTGTGT
37346753 TTGTAAATATGTTAAATTGAATGTTGTGT
1 TTGTAAATATGTTAAATTGAATGTTGTGT
37346782 TTGTA
1 TTGTA
37346787 TGGAATGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.30, C:0.00, G:0.21, T:0.49
Consensus pattern (29 bp):
TTGTAAATATGTTAAATTGAATGTTGTGT
Found at i:37352754 original size:17 final size:17
Alignment explanation
Indices: 37352714--37352747 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
37352704 TATATTAAAA
* *
37352714 TTATTATTATTATGGTT
1 TTATAATTATTATGATT
37352731 TTATAATTATTATGATT
1 TTATAATTATTATGATT
37352748 ATTTAATGCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.62
Consensus pattern (17 bp):
TTATAATTATTATGATT
Done.