Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 113 of 186
Found at i:37353163 original size:12 final size:12
Alignment explanation
Indices: 37353146--37353176 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
37353136 GGAAGAGGGG
37353146 AGAAAAAGAGAA
1 AGAAAAAGAGAA
*
37353158 AGAAAAAGGGAA
1 AGAAAAAGAGAA
37353170 AGAAAAA
1 AGAAAAA
37353177 TAAAAGAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (12 bp):
AGAAAAAGAGAA
Found at i:37354334 original size:18 final size:18
Alignment explanation
Indices: 37354311--37354351 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
37354301 AAAAAAAAAA
37354311 AGAAATT-GAATTATGAAT
1 AGAAATTGGAATTATG-AT
*
37354329 AGAAATTGGAATTGTGAT
1 AGAAATTGGAATTATGAT
37354347 AGAAA
1 AGAAA
37354352 GAGAAAAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (18 bp):
AGAAATTGGAATTATGAT
Found at i:37354862 original size:20 final size:20
Alignment explanation
Indices: 37354839--37354876 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37354829 GTTATTAAGT
37354839 TAAAAATTATGTTA-ATGATA
1 TAAAAATTA-GTTATATGATA
*
37354859 TAAATATTAGTTATATGA
1 TAAAAATTAGTTATATGA
37354877 ATGTGAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (20 bp):
TAAAAATTAGTTATATGATA
Found at i:37357104 original size:38 final size:38
Alignment explanation
Indices: 37357053--37357213 Score: 252
Period size: 38 Copynumber: 4.2 Consensus size: 38
37357043 TCGAAATATG
*
37357053 ATATCCGGGTTAAATCCCGTAGGCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
37357091 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGT-ATT
* *
37357130 -TATCCGAGTTAAATCCCGCAGCCTTCGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
* *
37357167 ATATCCGGGTTAAATCCCGCAGGCCTAGTGCTGGTATT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
*
37357205 ATATTCGGG
1 ATATCCGGG
37357214 CCTTTGAGCC
Statistics
Matches: 113, Mismatches: 8, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
37 3 0.03
38 107 0.95
39 3 0.03
ACGTcount: A:0.20, C:0.23, G:0.25, T:0.32
Consensus pattern (38 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATT
Found at i:37357289 original size:46 final size:44
Alignment explanation
Indices: 37357206--37357319 Score: 135
Period size: 46 Copynumber: 2.6 Consensus size: 44
37357196 GCTGGTATTA
* * *
37357206 TATTCGGGCCTTT-GAGCCTAGCAGACTATTATGCCGGTGAGACAT
1 TATTCGGGCCTTTCGAGCCTAGCAGGCTATAATACCGGTGA-A-AT
37357251 TATTCGGGCCTTTCGAGCCTAGCAGGCTATAATACCGGTGAAAT
1 TATTCGGGCCTTTCGAGCCTAGCAGGCTATAATACCGGTGAAAT
* *
37357295 GATATCAGGCC--TCGAGCCTAGCAGG
1 TAT-TCGGGCCTTTCGAGCCTAGCAGG
37357320 TGAAATGCCG
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
43 14 0.23
44 4 0.06
45 20 0.32
46 24 0.39
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (44 bp):
TATTCGGGCCTTTCGAGCCTAGCAGGCTATAATACCGGTGAAAT
Found at i:37358400 original size:3 final size:3
Alignment explanation
Indices: 37358392--37358423 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
37358382 GGTTAAGGCT
37358392 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
37358424 TGTGCTTGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:37365808 original size:96 final size:96
Alignment explanation
Indices: 37365647--37365840 Score: 379
Period size: 96 Copynumber: 2.0 Consensus size: 96
37365637 TAGTTATTAC
*
37365647 ATAAAGTATGAATCAACTACTCTAGTAACTAATTTTTAATTGATGATGGGTTGATTAAAAATTAA
1 ATAAAGTATGAATCAACTACTCTAGTAACTAATTTCTAATTGATGATGGGTTGATTAAAAATTAA
37365712 GGCTAATGTGTAAAAATTATATATTAAGAGT
66 GGCTAATGTGTAAAAATTATATATTAAGAGT
37365743 ATAAAGTATGAATCAACTACTCTAGTAACTAATTTCTAATTGATGATGGGTTGATTAAAAATTAA
1 ATAAAGTATGAATCAACTACTCTAGTAACTAATTTCTAATTGATGATGGGTTGATTAAAAATTAA
37365808 GGCTAATGTGTAAAAATTATATATTAAGAGT
66 GGCTAATGTGTAAAAATTATATATTAAGAGT
37365839 AT
1 AT
37365841 GGTCCCCAAA
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.36
Consensus pattern (96 bp):
ATAAAGTATGAATCAACTACTCTAGTAACTAATTTCTAATTGATGATGGGTTGATTAAAAATTAA
GGCTAATGTGTAAAAATTATATATTAAGAGT
Found at i:37379386 original size:21 final size:21
Alignment explanation
Indices: 37379362--37379421 Score: 84
Period size: 21 Copynumber: 2.9 Consensus size: 21
37379352 AAGTGACTTT
*
37379362 ACTTGATTCATAAGTAACCAA
1 ACTTGATCCATAAGTAACCAA
37379383 ACTTGATCCATAAGTAACCAA
1 ACTTGATCCATAAGTAACCAA
* * *
37379404 AGTTGACCCACAAGTAAC
1 ACTTGATCCATAAGTAAC
37379422 TAATCTTCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.23
Consensus pattern (21 bp):
ACTTGATCCATAAGTAACCAA
Found at i:37387217 original size:3 final size:3
Alignment explanation
Indices: 37387204--37387274 Score: 58
Period size: 3 Copynumber: 23.7 Consensus size: 3
37387194 AATTTATTTC
* **
37387204 ATA AT- ATA ATA ATA ATA ATA ATA ATAA ATA TCTA AT- ATA A-A ACC
1 ATA ATA ATA ATA ATA ATA ATA ATA AT-A ATA -ATA ATA ATA ATA ATA
*
37387248 ATA ATA ATAA ATA ATG ATA ATA ATA AT
1 ATA ATA AT-A ATA ATA ATA ATA ATA AT
37387275 TTAATATATA
Statistics
Matches: 55, Mismatches: 7, Indels: 12
0.74 0.09 0.16
Matches are distributed among these distances:
2 6 0.11
3 41 0.75
4 8 0.15
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:37387270 original size:27 final size:27
Alignment explanation
Indices: 37387204--37387273 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 27
37387194 AATTTATTTC
*
37387204 ATAATATAATAATAATAATAATAATAA
1 ATAATATAATAATAACAATAATAATAA
* * *
37387231 AT-ATCTAATATAAAACCATAATAATAA
1 ATAATATAATA-ATAACAATAATAATAA
37387258 ATAATGATAATAATAA
1 ATAAT-ATAATAATAA
37387274 TTTAATATAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
26 7 0.21
27 17 0.50
28 5 0.15
29 5 0.15
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.31
Consensus pattern (27 bp):
ATAATATAATAATAACAATAATAATAA
Found at i:37388951 original size:19 final size:20
Alignment explanation
Indices: 37388916--37388954 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
37388906 AATACATGTG
37388916 TAATAATAAACATATGTATT
1 TAATAATAAACATATGTATT
37388936 TAATAATAAA-ATATGTATT
1 TAATAATAAACATATGTATT
37388955 GCTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
TAATAATAAACATATGTATT
Found at i:37396923 original size:46 final size:44
Alignment explanation
Indices: 37396820--37396926 Score: 142
Period size: 44 Copynumber: 2.4 Consensus size: 44
37396810 GTCTTTGACG
** * * *
37396820 TGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATAATA
1 TGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAATA
*
37396864 TGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATTTCTAATA
1 TGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATA--TATAATA
37396910 TGGACTTACATGGCTCA
1 TGGACTTACATGGCTCA
37396927 TTTCTGTTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 32 0.58
46 23 0.42
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (44 bp):
TGGACTTACATGGCTCAATCCTGTCTCCAAAGCCATATATAATA
Found at i:37403505 original size:34 final size:35
Alignment explanation
Indices: 37403461--37403527 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
37403451 CAGTAAAATA
37403461 TTTTCCGTAAAATGATTT-CGGGAAAATATTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
37403495 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
37403528 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:37405143 original size:20 final size:21
Alignment explanation
Indices: 37405118--37405163 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
37405108 AATAAATAAA
*
37405118 ATCATTCA-TGTCAATTCCCT
1 ATCATTCACTGACAATTCCCT
*
37405138 ATCATTCACTGACAATTTCCT
1 ATCATTCACTGACAATTCCCT
37405159 ATCAT
1 ATCAT
37405164 CCATAAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.35
21 15 0.65
ACGTcount: A:0.28, C:0.28, G:0.04, T:0.39
Consensus pattern (21 bp):
ATCATTCACTGACAATTCCCT
Found at i:37405366 original size:21 final size:21
Alignment explanation
Indices: 37405340--37405406 Score: 107
Period size: 21 Copynumber: 3.2 Consensus size: 21
37405330 TGAATACACC
**
37405340 AACAGAAGCTTGTAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
37405361 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
*
37405382 AACAGAAACTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTG
37405403 AACA
1 AACA
37405407 AAAAGTAAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTG
Found at i:37427641 original size:44 final size:43
Alignment explanation
Indices: 37427574--37427800 Score: 184
Period size: 44 Copynumber: 5.2 Consensus size: 43
37427564 CGCCATCGTC
* * *
37427574 GATCTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAG
1 GATCTGC-ATCTTCGATCTACTTC-CCACCAATATAGGAAGACAG
* * * * * * *
37427619 GATCTGCGTCGTCGATCCACTTCCAATCATTATAGGAAGATAG
1 GATCTGCATCTTCGATCTACTTCCCACCAATATAGGAAGACAG
* * * * * * * *
37427662 GACCTGTTATCTTTGATCTACTTCACGCCAATACATGAAGACAA
1 GATCTG-CATCTTCGATCTACTTCCCACCAATATAGGAAGACAG
* * *
37427706 GATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGGAAGACAA
1 GATCTGC-ATCTTCGATCTACTTC-CCACCAATATAGGAAGACAG
* * * *
37427751 TATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGATAG
1 GATCTGCATCTTCGATCTACTTCCCACCAATATAGGAAGACAG
37427794 GATCTGC
1 GATCTGC
37427801 TCCTTTGACC
Statistics
Matches: 139, Mismatches: 40, Indels: 8
0.74 0.21 0.04
Matches are distributed among these distances:
43 42 0.30
44 69 0.50
45 28 0.20
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (43 bp):
GATCTGCATCTTCGATCTACTTCCCACCAATATAGGAAGACAG
Found at i:37439353 original size:101 final size:101
Alignment explanation
Indices: 37439178--37439378 Score: 393
Period size: 101 Copynumber: 2.0 Consensus size: 101
37439168 TTGTTCCGAA
37439178 GGAATATCACATCCAGCACGTTAGGACACGATACTCTACACCATCGAAACCAAGATCACCTTATA
1 GGAATATCACATCCAGCACGTTAGGACACGATACTCTACACCATCGAAACCAAGATCACCTTATA
*
37439243 GTTTAATGAAACCATACTTTGAAGCTTTAAGAGGAG
66 ATTTAATGAAACCATACTTTGAAGCTTTAAGAGGAG
37439279 GGAATATCACATCCAGCACGTTAGGACACGATACTCTACACCATCGAAACCAAGATCACCTTATA
1 GGAATATCACATCCAGCACGTTAGGACACGATACTCTACACCATCGAAACCAAGATCACCTTATA
37439344 ATTTAATGAAACCATACTTTGAAGCTTTAAGAGGA
66 ATTTAATGAAACCATACTTTGAAGCTTTAAGAGGA
37439379 TATTTGGCTA
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 99 1.00
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.24
Consensus pattern (101 bp):
GGAATATCACATCCAGCACGTTAGGACACGATACTCTACACCATCGAAACCAAGATCACCTTATA
ATTTAATGAAACCATACTTTGAAGCTTTAAGAGGAG
Found at i:37448572 original size:26 final size:26
Alignment explanation
Indices: 37448525--37448574 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
37448515 ATGTTTAAAA
*
37448525 ACTTTTTATTTATTATTTTTATTTTC
1 ACTTTTTATTTATTATTCTTATTTTC
*
37448551 ACTTTTATCTTTATTA-TCTTATTT
1 ACTTTT-TATTTATTATTCTTATTT
37448575 AAGTACTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (26 bp):
ACTTTTTATTTATTATTCTTATTTTC
Found at i:37459224 original size:17 final size:17
Alignment explanation
Indices: 37459202--37459236 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
37459192 TTAATATGTG
37459202 ATATCAAAGAGGATAGA
1 ATATCAAAGAGGATAGA
37459219 ATATCAAAGAGGATAGA
1 ATATCAAAGAGGATAGA
37459236 A
1 A
37459237 GGATGATAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.54, C:0.06, G:0.23, T:0.17
Consensus pattern (17 bp):
ATATCAAAGAGGATAGA
Found at i:37462506 original size:29 final size:29
Alignment explanation
Indices: 37462474--37462531 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
37462464 TGCTTAGGAA
37462474 TGATTATTTAAATATGTGAATGATTATAT
1 TGATTATTTAAATATGTGAATGATTATAT
37462503 TGATTATTTAAATATGTGAATGATTATAT
1 TGATTATTTAAATATGTGAATGATTATAT
37462532 AACTATACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.38, C:0.00, G:0.14, T:0.48
Consensus pattern (29 bp):
TGATTATTTAAATATGTGAATGATTATAT
Found at i:37476911 original size:173 final size:175
Alignment explanation
Indices: 37476732--37477107 Score: 544
Period size: 173 Copynumber: 2.2 Consensus size: 175
37476722 GTCTTCGATA
* * * * *
37476732 TGCTCCACTACTGCTTAGGGAGATAAGATTTACAATCTTCGGCCTGCTCCATTGCTGCTCAGGGA
1 TGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGA
* * * * *
37476797 GATAAGGCTAGTGGCTTAAATTTTCTTCCC-TACTACC-TCGGGAAAATAATATT-C-GCCTTCG
66 GACAAGGCTAGTGGCTTAAATCTGC-TCCCTTACTACCTTAGGG-AAATAAGATTACTGCCTTCG
*
37476858 ATCTGCTTCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCC
129 ATCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCC
37476905 TGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGA
1 TGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGA
* * *
37476970 GACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTTAGGGAGATAAGATTCACTGTCTTCGA
66 GACAAGGCTAGTGGCTTAAATCTGCTCCCTTACTACCTTAGGGAAATAAGATT-ACTGCCTTCGA
* * *
37477035 TCTGCTCCACTATTGCTTAGGGAGATAATATCTACAATCTTCAGCC
130 TCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCC
37477081 TGCTCCACTACTGCTCAGGGAGATAAG
1 TGCTCCACTACTGCTCAGGGAGATAAG
37477108 GCTAGTGGCT
Statistics
Matches: 181, Mismatches: 17, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
172 4 0.02
173 96 0.53
174 4 0.02
175 1 0.01
176 76 0.42
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (175 bp):
TGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGA
GACAAGGCTAGTGGCTTAAATCTGCTCCCTTACTACCTTAGGGAAATAAGATTACTGCCTTCGAT
CTGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCC
Found at i:37476923 original size:44 final size:44
Alignment explanation
Indices: 37476592--37477240 Score: 303
Period size: 44 Copynumber: 14.8 Consensus size: 44
37476582 TAAGATTCGC
* * * *
37476592 CTTCAATCTGCTCCATTGCTACTCAGGGAGATAAGATCTACAAT
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
* * * ***
37476636 CTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAG-GCTAGTGGT
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTA-CAAT
* * * * * **
37476680 -TTAAATCTACTCC-CTTGCTACCTCAGGGAGATAAGAT-TCACCGT
1 CTTCAGTCTGCTCCAC-TACT-GCTCAGGGAGATAAGATCT-ACAAT
* * *
37476724 CTTC-GATATGCTCCACTACTGCTTAGGGAGATAAGATTTACAAT
1 CTTCAG-TCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
* * * * * ****
37476768 CTTCGGCCTGCTCCATTGCTGCTCAGGGAGATAAG-GCTAGTGG
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
* * * * * * * **
37476811 CTTAAATTTTCTTCC-CTACTACCTC-GGGAAAATAATAT-T-C-GC
1 CTTCAGTCTGC-TCCACTACT-GCTCAGGG-AGATAAGATCTACAAT
*
37476853 CTTC-GATCTGCTTCACTACTGCTCAGGGAGATAAGATCTACAAT
1 CTTCAG-TCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
*
37476897 CTTCAGCCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
* * * ****
37476941 CTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAG-GCTAGTGG
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
* * * * * **
37476984 CTTAAATCTGCTCC-CTTGCTACCTTAGGGAGATAAGAT-TCACTGT
1 CTTCAGTCTGCTCCAC-TACT-GCTCAGGGAGATAAGATCT-ACAAT
* * *
37477029 CTTC-GATCTGCTCCACTATTGCTTAGGGAGATAATATCTACAAT
1 CTTCAG-TCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
* * ****
37477073 CTTCAGCCTGCTCCACTACTGCTCAGGGAGATAAG-GCTAGTGG
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
* * * * * *
37477116 CTTAAATCTGCTTCC-CTACTACCTCAGGAAGATAAGAT-TCGCCAT
1 CTTCAGTCTGC-TCCACTACT-GCTCAGGGAGATAAGATCT-ACAAT
* * * *
37477161 CTT-TGATCTGCTCCACTGCTACTCAGGGAGATAAGATTTACAAT
1 CTTCAG-TCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
* * * * *
37477205 CTTCAGCCTGTTCCACTGCTGCTCAGAGAGACAAGA
1 CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGA
37477241 CTAGTGGCTT
Statistics
Matches: 445, Mismatches: 123, Indels: 74
0.69 0.19 0.12
Matches are distributed among these distances:
41 12 0.03
42 18 0.04
43 62 0.14
44 304 0.68
45 47 0.11
46 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (44 bp):
CTTCAGTCTGCTCCACTACTGCTCAGGGAGATAAGATCTACAAT
Found at i:37476931 original size:129 final size:129
Alignment explanation
Indices: 37476487--37476927 Score: 546
Period size: 129 Copynumber: 3.4 Consensus size: 129
37476477 ATGTAATTTT
* ** * *
37476487 AGGGAGA-AGAGATTTACAATCTTCAGCCTATTCCACTACTACTCAAGGAGACAAGGCTAGTGGC
1 AGGGAGATA-AGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGC
* * * * * * * *
37476551 TTAAATATGCTTCCCTACTGCCTCAGAAAAATAAGATTCGCCTTCAATCTGCTCCATTGCTACTC
65 TTAAATATACTTCCCTACTACCTCGGGAAAATAAGATTCGCCTTCGATCTGCTCCACTACTGCTC
*
37476616 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGTT
1 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
* * * * *
37476681 TAAATCTAC-TCCCTTGCTACCTCAGGG-AGATAAGATTCACCGTCTTCGATATGCTCCACTACT
66 TAAATATACTTCCC-TACTACCTC-GGGAAAATAAGATT---CGCCTTCGATCTGCTCCACTACT
*
37476744 GCTT
126 GCTC
* * * * *
37476748 AGGGAGATAAGATTTACAATCTTCGGCCTGCTCCATTGCTGCTCAGGGAGATAAGGCTAGTGGCT
1 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
* * * *
37476813 TAAATTTTCTTCCCTACTACCTCGGGAAAATAATATTCGCCTTCGATCTGCTTCACTACTGCTC
66 TAAATATACTTCCCTACTACCTCGGGAAAATAAGATTCGCCTTCGATCTGCTCCACTACTGCTC
37476877 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGA
1 AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGA
37476928 TAAGATCTAC
Statistics
Matches: 265, Mismatches: 39, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
128 4 0.02
129 150 0.57
130 2 0.01
131 3 0.01
132 102 0.38
133 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (129 bp):
AGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCT
TAAATATACTTCCCTACTACCTCGGGAAAATAAGATTCGCCTTCGATCTGCTCCACTACTGCTC
Found at i:37477040 original size:132 final size:132
Alignment explanation
Indices: 37476874--37477332 Score: 609
Period size: 132 Copynumber: 3.5 Consensus size: 132
37476864 TTCACTACTG
* *
37476874 CTCAGGGAGATAAGA-TCTACAATCTTC-AGCCTGCTCCACTACTGCTCAGGGAGATAAGATCTA
1 CTCAGGGAGATAAGATTC-ACCATCTTCGA-TCTGCTCCACTACTGCTCAGGGAGATAAGATCTA
37476937 CAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTG
64 CAATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTG
37477002 CTAC
129 CTAC
* ** * * *
37477006 CTTAGGGAGATAAGATTCACTGTCTTCGATCTGCTCCACTATTGCTTAGGGAGATAATATCTACA
1 CTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTACA
* *
37477071 ATCTTCAGCCTGCTCCACTACTGCTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCC-TAC
66 ATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGC-TCCCTTGC
37477135 TAC
130 TAC
* * * * * *
37477138 CTCAGGAAGATAAGATTCGCCATCTTTGATCTGCTCCACTGCTACTCAGGGAGATAAGATTTACA
1 CTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTACA
* * * * *
37477203 ATCTTCAGCCTGTTCCACTGCTGCTCAGAGAGACAAGACTAGTGGCTTAAATCTACTCCCTTGCT
66 ATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCT
37477268 AC
131 AC
** * * * * *
37477270 CTCAGGGAGATAAGATTTTCCATCTCCGATCTGCTCCATTACTACCTCATGAAGATAAGATCT
1 CTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACT-GCTCAGGGAGATAAGATCT
37477333 GTGAATTTAC
Statistics
Matches: 283, Mismatches: 39, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
131 4 0.01
132 257 0.91
133 22 0.08
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (132 bp):
CTCAGGGAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTCAGGGAGATAAGATCTACA
ATCTTCAGCCTGCTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCT
AC
Found at i:37477043 original size:305 final size:307
Alignment explanation
Indices: 37476599--37477240 Score: 1018
Period size: 305 Copynumber: 2.1 Consensus size: 307
37476589 CGCCTTCAAT
* *
37476599 CTGCTCCATTGCTACTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGG
1 CTGCTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGG
*
37476664 AGACAAGGCTAGTGGTTTAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATTCACCGTCTTCG
66 AGACAAGGCTAGTGGCTTAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATTCACCGTCTTCG
* * * *
37476729 ATATGCTCCACTACTGCTTAGGGAGATAAGATTTACAATCTTCGGCCTGCTCCATTGCTGCTCAG
131 ATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAG
* * * *
37476794 GGAGATAAGGCTAGTGGCTTAAATTTTCTTCCCTACTACCTCGGGAAAATAATATTCG-C-CTTC
196 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCAGGAAAATAAGATTCGCCACTTC
* *
37476857 GATCTGCTTCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGC
261 GATCTGCTCCACTACTACTCAGGGAGATAAGATCTACAATCTTCAGC
*
37476904 CTGCTCCACTACTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGG
1 CTGCTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGG
* * *
37476969 AGACAAGGCTAGTGGCTTAAATCTGCTCCCTTGCTACCTTAGGGAGATAAGATTCACTGTCTTCG
66 AGACAAGGCTAGTGGCTTAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATTCACCGTCTTCG
* * *
37477034 ATCTGCTCCACTATTGCTTAGGGAGATAATATCTACAATCTTCAGCCTGCTCCACTACTGCTCAG
131 ATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAG
*
37477099 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCAGGAAGATAAGATTCGCCATCTT
196 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCAGGAAAATAAGATTCGCCA-CTT
* * *
37477164 TGATCTGCTCCACTGCTACTCAGGGAGATAAGATTTACAATCTTCAGC
260 CGATCTGCTCCACTACTACTCAGGGAGATAAGATCTACAATCTTCAGC
* * *
37477212 CTGTTCCACTGCTGCTCAGAGAGACAAGA
1 CTGCTCCACTGCTGCTCAGGGAGATAAGA
37477241 CTAGTGGCTT
Statistics
Matches: 306, Mismatches: 28, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
305 234 0.76
306 1 0.00
308 71 0.23
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (307 bp):
CTGCTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAGGG
AGACAAGGCTAGTGGCTTAAATCTACTCCCTTGCTACCTCAGGGAGATAAGATTCACCGTCTTCG
ATATGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGCCTGCTCCACTACTGCTCAG
GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCAGGAAAATAAGATTCGCCACTTC
GATCTGCTCCACTACTACTCAGGGAGATAAGATCTACAATCTTCAGC
Found at i:37479122 original size:47 final size:48
Alignment explanation
Indices: 37479068--37479160 Score: 134
Period size: 47 Copynumber: 2.0 Consensus size: 48
37479058 GAGAGCAAAT
* * *
37479068 GGTAACTTCTCATGCTAATCTCTATAAGT-TTGGTCATTTTCCCTAAC
1 GGTAACTTCTCATGCCAATCTCTATAAGTCTCGGTCATCTTCCCTAAC
* *
37479115 GGTAACTTCTCATGCCAATCTCTGTAGGTCTCGGTCATCTTCCCTA
1 GGTAACTTCTCATGCCAATCTCTATAAGTCTCGGTCATCTTCCCTA
37479161 CAATCTTCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 26 0.65
48 14 0.35
ACGTcount: A:0.20, C:0.27, G:0.15, T:0.38
Consensus pattern (48 bp):
GGTAACTTCTCATGCCAATCTCTATAAGTCTCGGTCATCTTCCCTAAC
Found at i:37505172 original size:24 final size:24
Alignment explanation
Indices: 37505145--37505195 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
37505135 TAGCCAGTTC
37505145 TTCTTGCATCT-ATGTTTGCATCTG
1 TTCTTGCATCTCAT-TTTGCATCTG
* *
37505169 TTCTTGCATTTCCTTTTGCATCTG
1 TTCTTGCATCTCATTTTGCATCTG
37505193 TTC
1 TTC
37505196 CAACCTTTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 23 0.96
25 1 0.04
ACGTcount: A:0.10, C:0.24, G:0.14, T:0.53
Consensus pattern (24 bp):
TTCTTGCATCTCATTTTGCATCTG
Found at i:37505204 original size:24 final size:24
Alignment explanation
Indices: 37505159--37505205 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
37505149 TGCATCTATG
***
37505159 TTTGCATCTGTTCTTGCATTTCCT
1 TTTGCATCTGTTCCAACATTTCCT
*
37505183 TTTGCATCTGTTCCAACCTTTCC
1 TTTGCATCTGTTCCAACATTTCC
37505206 AATTTTTTAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.11, C:0.30, G:0.11, T:0.49
Consensus pattern (24 bp):
TTTGCATCTGTTCCAACATTTCCT
Found at i:37509082 original size:17 final size:16
Alignment explanation
Indices: 37509062--37509101 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
37509052 TAGATAGAAT
37509062 ATAAAAAATAATATATA
1 ATAAAAAA-AATATATA
37509079 ATAAATAAAAATATATA
1 ATAAA-AAAAATATATA
37509096 ATAAAA
1 ATAAAA
37509102 TAACTTGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.05
17 18 0.82
18 3 0.14
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
ATAAAAAAAATATATA
Found at i:37509103 original size:22 final size:20
Alignment explanation
Indices: 37509065--37509104 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
37509055 ATAGAATATA
*
37509065 AAAAATAATATATAATAAAT
1 AAAAATAATATAAAATAAAT
37509085 AAAAATATATAATAAAATAA
1 AAAAATA-AT-ATAAAATAA
37509105 CTTGATGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 7 0.41
21 2 0.12
22 8 0.47
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (20 bp):
AAAAATAATATAAAATAAAT
Found at i:37513716 original size:3 final size:3
Alignment explanation
Indices: 37513708--37513740 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
37513698 TGAATTGCAA
37513708 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
37513741 GAAATTAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:37517641 original size:49 final size:49
Alignment explanation
Indices: 37517557--37518067 Score: 849
Period size: 49 Copynumber: 10.6 Consensus size: 49
37517547 TATTTGAATA
* *
37517557 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGGCAATGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * *
37517604 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
*
37517653 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
37517700 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
37517749 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
37517798 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
37517847 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
37517896 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
37517945 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* * * * *
37517994 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
* *
37518041 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGGAAGTGTATATATATGTGATAAG
37518068 TCCCGAAGGG
Statistics
Matches: 444, Mismatches: 14, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
47 106 0.24
48 1 0.00
49 337 0.76
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (49 bp):
AATGTGGAAGTGTATATATATGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:37526117 original size:27 final size:27
Alignment explanation
Indices: 37526077--37526132 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
37526067 AACATGTCAG
*
37526077 GAAAGAAAAGCCTTTTTGGCGTAA-CAT
1 GAAAGAAAAGCCTTTGTGGCG-AATCAT
*
37526104 GAAAGAAAATCCTTTGTGGCGAATCAT
1 GAAAGAAAAGCCTTTGTGGCGAATCAT
37526131 GA
1 GA
37526133 TATGGAAGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.25
Consensus pattern (27 bp):
GAAAGAAAAGCCTTTGTGGCGAATCAT
Found at i:37528625 original size:56 final size:56
Alignment explanation
Indices: 37528578--37528712 Score: 252
Period size: 56 Copynumber: 2.4 Consensus size: 56
37528568 CTTACTTGTG
*
37528578 CACATATATCGGAATCACATATCGATGGCAACGTATTAAACGTGGTCTTACTCGCA
1 CACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCA
37528634 CACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCA
1 CACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCA
*
37528690 CATATATATCGGAATCACATATC
1 CACATATATCGGAATCACATATC
37528713 ACAAGTCGAA
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 77 1.00
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (56 bp):
CACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCA
Found at i:37534543 original size:13 final size:13
Alignment explanation
Indices: 37534525--37534595 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
37534515 AAATTTTTCC
37534525 AAAGCACTTCTCA
1 AAAGCACTTCTCA
37534538 AAAGCACTTCTCA
1 AAAGCACTTCTCA
*
37534551 AAAGTACTTCTCA
1 AAAGCACTTCTCA
*
37534564 AAAGCACTTCTCT
1 AAAGCACTTCTCA
* *
37534577 ACAGCACTTTTCA
1 AAAGCACTTCTCA
37534590 AAAGCA
1 AAAGCA
37534596 ATGAAGAACT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 51 1.00
ACGTcount: A:0.38, C:0.28, G:0.08, T:0.25
Consensus pattern (13 bp):
AAAGCACTTCTCA
Found at i:37548496 original size:29 final size:28
Alignment explanation
Indices: 37548464--37548521 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 28
37548454 TAATTGTTCT
*
37548464 AAATCATTTTATATATTATATTATTTTAA
1 AAATCATTTTACATATTA-ATTATTTTAA
* *
37548493 AAATCATTTTGCATATTAATTGTTTTAA
1 AAATCATTTTACATATTAATTATTTTAA
37548521 A
1 A
37548522 TTATTTTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 10 0.38
29 16 0.62
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.52
Consensus pattern (28 bp):
AAATCATTTTACATATTAATTATTTTAA
Found at i:37548731 original size:14 final size:14
Alignment explanation
Indices: 37548658--37548735 Score: 54
Period size: 14 Copynumber: 5.4 Consensus size: 14
37548648 CCTTTTTATT
37548658 TTTTTTATT-TTTA
1 TTTTTTATTCTTTA
*
37548671 -TTTTTACTCTTTTA
1 TTTTTTATTC-TTTA
** *
37548685 TTACTTATTC-TAA
1 TTTTTTATTCTTTA
37548698 TCTTTTTCATATCATTTA
1 T-TTTTT-AT-TC-TTTA
37548716 TTTTTTATTCTTTA
1 TTTTTTATTCTTTA
37548730 TTTTTT
1 TTTTTT
37548736 TAGACATATC
Statistics
Matches: 49, Mismatches: 8, Indels: 15
0.68 0.11 0.21
Matches are distributed among these distances:
12 7 0.14
13 3 0.06
14 17 0.35
15 10 0.20
16 4 0.08
17 5 0.10
18 3 0.06
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.72
Consensus pattern (14 bp):
TTTTTTATTCTTTA
Found at i:37552340 original size:19 final size:19
Alignment explanation
Indices: 37552316--37552360 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
37552306 AACGCCTTTT
*
37552316 TGCATT-CACTACATGCATC
1 TGCATTACACTACAT-CATA
*
37552335 TGCATTACATTACATCATA
1 TGCATTACACTACATCATA
37552354 TGCATTA
1 TGCATTA
37552361 AAGTCCATCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.31, C:0.24, G:0.09, T:0.36
Consensus pattern (19 bp):
TGCATTACACTACATCATA
Found at i:37555862 original size:37 final size:37
Alignment explanation
Indices: 37555812--37555890 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
37555802 TTATTACGAA
* * * *
37555812 GTCTTACCCGGACATAATCTCCACATGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
37555849 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
37555886 GTCTT
1 GTCTT
37555891 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:37556129 original size:49 final size:49
Alignment explanation
Indices: 37556009--37556508 Score: 882
Period size: 49 Copynumber: 10.3 Consensus size: 49
37555999 CCCTTCGGGA
* * * * * *
37556009 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
* *
37556056 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
*
37556103 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
37556152 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
37556201 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
37556250 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
37556299 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
37556348 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
37556397 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
*
37556446 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
37556495 CTTATCACATATAT
1 CTTATCACATATAT
37556509 GCATGTTCAC
Statistics
Matches: 436, Mismatches: 13, Indels: 6
0.96 0.03 0.01
Matches are distributed among these distances:
46 1 0.00
47 42 0.10
49 393 0.90
ACGTcount: A:0.31, C:0.29, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGACCATTAGGC
Found at i:37565047 original size:44 final size:44
Alignment explanation
Indices: 37564999--37565278 Score: 171
Period size: 44 Copynumber: 6.3 Consensus size: 44
37564989 AGCCACTAGC
37564999 CTTATCTCCCTGAGGTAGCAAGAGAGCAGACTAATGATTGTAGT
1 CTTATCTCCCTGAGGTAGCAAGAGAGCAGACTAATGATTGTAGT
* *
37565043 CTTATCTTCCTGAGGTAGCAAG-GAAGCAGACTGAA-GATTGCAGAT
1 CTTATCTCCCTGAGGTAGCAAGAG-AGCAGACT-AATGATTGTAG-T
* * * * * * * * *
37565088 TTTATCTCGCTCAGATAGCAACAGAGCAGATCGAA-GATGGAAAAT
1 CTTATCTCCCTGAGGTAGCAAGAGAGCAGA-CTAATGATTG-TAGT
* * ** **** *
37565133 CTTATCTTCC-GAGGTAGCAGGAGAGCAGA-TTTTAGCCACTAGC
1 CTTATCTCCCTGAGGTAGCAAGAGAGCAGACTAAT-GATTGTAGT
* * *
37565176 CTTATCTTCCC-GAGGTAGCGAGGGAGCAGGCTAATGATTGTAGT
1 CTTATC-TCCCTGAGGTAGCAAGAGAGCAGACTAATGATTGTAGT
* * * *
37565220 CTTATCTTCCTGAGGTA--AAGACGGAGCAGACTAAAGATGGTAAAT
1 CTTATCTCCCTGAGGTAGCAAGA--GAGCAGACTAATGATTGT-AGT
37565265 CTTATCTCCCTGAG
1 CTTATCTCCCTGAG
37565279 CAGCAGTGGA
Statistics
Matches: 173, Mismatches: 49, Indels: 27
0.69 0.20 0.11
Matches are distributed among these distances:
42 2 0.01
43 11 0.06
44 101 0.58
45 56 0.32
46 3 0.02
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTGAGGTAGCAAGAGAGCAGACTAATGATTGTAGT
Found at i:37565401 original size:44 final size:44
Alignment explanation
Indices: 37565353--37565511 Score: 178
Period size: 44 Copynumber: 3.6 Consensus size: 44
37565343 AGCCACCAGC
37565353 CTTATCTTCCTGAGGTAGCAAGGGAGTAGGCCGAAAATTGTAGT
1 CTTATCTTCCTGAGGTAGCAAGGGAGTAGGCCGAAAATTGTAGT
* * *
37565397 CTTATCTTCTTGAGGTAGCAAGGGAGCAGGTC-AAGAATTGTTA-T
1 CTTATCTTCCTGAGGTAGCAAGGGAGTAGGCCGAA-AATTG-TAGT
** * * * *
37565441 CTTATCTTTTTGAGGTAGCAAGGAAGTAGACTGAAGATTGTAGAT
1 CTTATCTTCCTGAGGTAGCAAGGGAGTAGGCCGAAAATTGTAG-T
* *
37565486 CTTATCTTCCCGAGGTAGTAAGGGAG
1 CTTATCTTCCTGAGGTAGCAAGGGAG
37565512 CAGATTTTAG
Statistics
Matches: 95, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
43 4 0.04
44 65 0.68
45 26 0.27
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (44 bp):
CTTATCTTCCTGAGGTAGCAAGGGAGTAGGCCGAAAATTGTAGT
Found at i:37565490 original size:177 final size:175
Alignment explanation
Indices: 37564952--37565541 Score: 619
Period size: 177 Copynumber: 3.3 Consensus size: 175
37564942 AAAAATGACA
37564952 AATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAG
1 AATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAG
* * * *
37565017 CAAGAGAGCAGACTAATGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGAAGCAGACTGAAGATT
66 CAAGGGAGCAGGCTAATGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAAGATT
* * * * * * *
37565082 GCAGATTTTATCTCGCTCAGATAGCAA-CAGAGCAGA-TCGAAGATGG
131 GTA-ATCTTATCTCCCTGAGGTAGCAAGGA-AGCAGACT-GAAGATTG
37565128 AAAATCTTATCTT-CCGAGGTAGC-AGGAGAGCAGATTTTAGCCACTAGCCTTATCTTCCC-GAG
1 --AATCTTATCTTCCCGAGGTAGCAAGG-GAGCAGATTTTAGCCACTAGCCTTATC-TCCCTGAG
*
37565190 GTAGCGAGGGAGCAGGCTAATGATTGTAGTCTTATCTTCCTGAGGTA--AAGACGGAGCAGACTA
62 GTAGCAAGGGAGCAGGCTAATGATTGTAGTCTTATCTTCCTGAGGTAGCAAG--GGAGCAGACTA
* * * *
37565253 AAGATGGTAAATCTTATCTCCCTGA-GCAGC-AGTGGAGCAGATCGGAGACGA-TG
125 AAGATTGT-AATCTTATCTCCCTGAGGTAGCAAG-GAAGCAGA-CTGA-A-GATTG
* * * * *
37565306 AATCTTATCTTCCCAAGGTAACAGGGGAGCAGATTTTAGCCACCAGCCTTATCTTCCTGAGGTAG
1 AATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAG
* * * * * *
37565371 CAAGGGAGTAGGCCGAA-AATTGTAGTCTTATCTTCTTGAGGTAGCAAGGGAGCAG-GTCAAGAA
66 CAAGGGAGCAGG-CTAATGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAAG-A
* *** *
37565434 TTGTTATCTTATCTTTTTGAGGTAGCAAGGAAGTAGACTGAAGATTG
129 TTGTAATCTTATCTCCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
* * *
37565481 TAGATCTTATCTTCCCGAGGTAGTAAGGGAGCAGATTTTAGCCACAAGTCTTATCTCCCTG
1 -A-ATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTG
37565542 CAGTTACAGT
Statistics
Matches: 345, Mismatches: 44, Indels: 47
0.79 0.10 0.11
Matches are distributed among these distances:
174 2 0.01
175 7 0.02
176 46 0.13
177 260 0.75
178 25 0.07
179 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.26
Consensus pattern (175 bp):
AATCTTATCTTCCCGAGGTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAG
CAAGGGAGCAGGCTAATGATTGTAGTCTTATCTTCCTGAGGTAGCAAGGGAGCAGACTAAAGATT
GTAATCTTATCTCCCTGAGGTAGCAAGGAAGCAGACTGAAGATTG
Found at i:37577127 original size:224 final size:224
Alignment explanation
Indices: 37576728--37577169 Score: 706
Period size: 224 Copynumber: 2.0 Consensus size: 224
37576718 GTCTACTGAA
* * * *
37576728 TTTGTGATTAGAGTGTCAAACCCTGGGGCCGGTGTGTTATGGTTGAGAAGGTGTGTAAGAATTGT
1 TTTGTGATTAGAGTGTCAAACCCTGAGGCCGGTGTGATATGGTTGAGAAGGTATATAAGAATTGT
* *
37576793 CCTTTAATAGTTTGAGATCTGTGCTTTCCGACTGATTTGATGTTACTACCATTTGCTGAGTTCAA
66 CCTTTAATAGTTCGAGATCTGTGCTTTCCAACTGATTTGATGTTACTACCATTTGCTGAGTTCAA
* * * *
37576858 ATTAATTCTGGGTATGGATTGGTTGACTTTAGATGATACTGTTGTAAATTGCAAAAGAAAGACCA
131 ATTAATTCTGGCTATGGATGGGCTGACTTTACATGATACTGTTGTAAATTGCAAAAGAAAGACCA
37576923 TTGATCTATGGAACCAGAATAATACTAAG
196 TTGATCTATGGAACCAGAATAATACTAAG
* * *
37576952 TTTGTGATTAGAGTGTCAAACCCTTAGGCTGGTGTGATATGGTTGATAAGGTATATAAGAATTGT
1 TTTGTGATTAGAGTGTCAAACCCTGAGGCCGGTGTGATATGGTTGAGAAGGTATATAAGAATTGT
* * *
37577017 CCTTTAATGGTTCGAGATCTGTTCTTTCCAACTGATTTGATGTTACTACCATTTGTTGAGTTCAA
66 CCTTTAATAGTTCGAGATCTGTGCTTTCCAACTGATTTGATGTTACTACCATTTGCTGAGTTCAA
* *
37577082 CTTAATTCTGGCTATGGATGGGCTGACTTTACATGATGA-TGTTGTAAATTGTAAAAGAAAGACC
131 ATTAATTCTGGCTATGGATGGGCTGACTTTACATGAT-ACTGTTGTAAATTGCAAAAGAAAGACC
37577146 ATTGATCTATGGAACCAGAATAAT
195 ATTGATCTATGGAACCAGAATAAT
37577170 GAAGTCATTC
Statistics
Matches: 199, Mismatches: 18, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
224 198 0.99
225 1 0.01
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (224 bp):
TTTGTGATTAGAGTGTCAAACCCTGAGGCCGGTGTGATATGGTTGAGAAGGTATATAAGAATTGT
CCTTTAATAGTTCGAGATCTGTGCTTTCCAACTGATTTGATGTTACTACCATTTGCTGAGTTCAA
ATTAATTCTGGCTATGGATGGGCTGACTTTACATGATACTGTTGTAAATTGCAAAAGAAAGACCA
TTGATCTATGGAACCAGAATAATACTAAG
Found at i:37589742 original size:24 final size:23
Alignment explanation
Indices: 37589709--37589766 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
37589699 AGTTGAAAAG
37589709 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
37589733 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
37589755 TATATATAATAA
1 TATA-ATAATAA
37589767 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:37590119 original size:49 final size:48
Alignment explanation
Indices: 37590037--37590194 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
37590027 CTTACTTTGA
*
37590037 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
37590084 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
37590133 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
37590182 GAATGTGATAAGT
1 GAATGTGA-AAGT
37590195 CCCGAAGGGC
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 13 0.12
49 89 0.84
50 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:37590370 original size:37 final size:37
Alignment explanation
Indices: 37590312--37590390 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
37590302 CCGAGCTCTA
* * *
37590312 AAGACCCGATGACTACATGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
* *
37590349 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
37590386 AAGAC
1 AAGAC
37590391 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:37595725 original size:38 final size:38
Alignment explanation
Indices: 37595674--37595793 Score: 143
Period size: 38 Copynumber: 3.1 Consensus size: 38
37595664 TTTAAACTTA
* *
37595674 GATATAACACCAGCACTAGGCCTGCGGGATTTAAGCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAAGCCG
* *
37595712 GATATAATACCAGCACGAAGCCTGCGGGATTTAACCCG
1 GATATAATACCAGCACTAAGCCTGCGGGATTTAAGCCG
* * *
37595750 GATATAATTCTAGCA-TATAGCCTGCGGGTCTTTAAGCTCG
1 GATATAATACCAGCACTA-AGCCTGCGGG-ATTTAAGC-CG
37595790 GATA
1 GATA
37595794 CACATCAAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
37 1 0.01
38 57 0.81
39 6 0.09
40 6 0.09
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.23
Consensus pattern (38 bp):
GATATAATACCAGCACTAAGCCTGCGGGATTTAAGCCG
Found at i:37598316 original size:48 final size:48
Alignment explanation
Indices: 37598245--37598464 Score: 204
Period size: 48 Copynumber: 4.6 Consensus size: 48
37598235 TGATATGTGT
* *
37598245 GCTAGTGTAAGACCATGTCTGGGACATGGCATCAACCACATTG-CGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCAT-ATCCACATTGACGAGA
* ** *
37598293 GCTAGTGTAAGGCCATGTCTGGGACATGGC--ATCGGCATCGAC-ATCTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATATCCACATTGACGA---GA
* * *
37598341 TCCAGTGTAAGACCATGTCTGGGACATGG-A-ATCGACATTGAGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATATCCACATT--GACGAGA
* * *
37598389 GCTAGTGTCAGACCATGTCTGGGACATGGCAT-TGGCA-TTGTGACGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATAT-CCACAT-TGACGAGA
37598437 GCTAGTGTAAGACCATGTCTGGGACATG
1 GCTAGTGTAAGACCATGTCTGGGACATG
37598465 CCTTGACATG
Statistics
Matches: 142, Mismatches: 18, Indels: 24
0.77 0.10 0.13
Matches are distributed among these distances:
45 6 0.04
46 1 0.01
48 126 0.89
49 3 0.02
50 5 0.04
51 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATATCCACATTGACGAGA
Found at i:37598412 original size:96 final size:95
Alignment explanation
Indices: 37598248--37598608 Score: 269
Period size: 96 Copynumber: 3.8 Consensus size: 95
37598238 TATGTGTGCT
* *
37598248 AGTGTAAGACCATGTCTGGGACATGGCATCAACCACATTGCGTGAGCTAGTGTAAGGCCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCA-CAACCACATTGCGAGAGCTAGTGTAAGACCATGTCT
* *
37598313 GGGACATGGCATCGGCATCGACATC-TGATCC
65 GGGACATGGCATCGGCATCGACA-CGAGAGCC
* * *
37598344 AGTGTAAGACCATGTCTGGGACATGG-A-ATCGACATTGAGACGAGAGCTAGTGTCAGACCATGT
1 AGTGTAAGACCATGTCTGGGACATGGCACAACCACATT--G-CGAGAGCTAGTGTAAGACCATGT
* * ** *
37598407 CTGGGACATGGCATTGGCATTGTGACGAGAGCT
63 CTGGGACATGGCATCGGCATCGACACGAGAGCC
*** * * *
37598440 AGTGTAAGACCATGTCTGGGACAT-GC-C-TTGACA-T--GTGAGCCAGTATAAGACCATGTCTG
1 AGTGTAAGACCATGTCTGGGACATGGCACAACCACATTGCGAGAGCTAGTGTAAGACCATGTCTG
* * * * * * * *
37598499 GGGCTTAGCATTGGCATTGAGACGAGCGCT
66 GGACATGGCATCGGCATCGACACGAGAGCC
* * * * * *
37598529 AGTGCAAGACTATGTCTAGGATATGGCATCAGCCTCGACA-T--GTGAGCTAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCA-CA-AC-C-ACATTGCGAGAGCTAGTGTAAGACCATG
37598591 TCTGGGACATGGCATCGG
62 TCTGGGACATGGCATCGG
37598609 TAATTTACCC
Statistics
Matches: 217, Mismatches: 35, Indels: 26
0.78 0.13 0.09
Matches are distributed among these distances:
89 66 0.30
90 2 0.01
92 1 0.00
93 7 0.03
94 1 0.00
95 9 0.04
96 131 0.60
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCACAACCACATTGCGAGAGCTAGTGTAAGACCATGTCTG
GGACATGGCATCGGCATCGACACGAGAGCC
Found at i:37598531 original size:89 final size:92
Alignment explanation
Indices: 37598398--37598605 Score: 251
Period size: 89 Copynumber: 2.2 Consensus size: 92
37598388 AGCTAGTGTC
* * *
37598398 AGACCATGTCTGGGACATGGCATTGGCATTGTGACGAGAGCTAGTGTAAGACCATGTCT-GG-GA
1 AGACCATGTCTGGGACATAGCATTGGCATTGAGACGAGAGCTAGTGCAAGACCATGTCTAGGAGA
*
37598461 CAT-GCCTTGACATGTGAGCCAGTATA
66 CATAGCCTCGACATGTGAGCCAGTATA
* * * *
37598487 AGACCATGTCTGGGGCTTAGCATTGGCATTGAGACGAGCGCTAGTGCAAGACTATGTCTAGGATA
1 AGACCATGTCTGGGACATAGCATTGGCATTGAGACGAGAGCTAGTGCAAGACCATGTCTAGG--A
* * *
37598552 TGGCATCAGCCTCGACATGTGAGCTAGTGTA
64 -GACAT-AGCCTCGACATGTGAGCCAGTATA
*
37598583 AGACCATGTCTGGGACATGGCAT
1 AGACCATGTCTGGGACATAGCAT
37598606 CGGTAATTTA
Statistics
Matches: 98, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
89 52 0.53
90 2 0.02
94 4 0.04
96 40 0.41
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (92 bp):
AGACCATGTCTGGGACATAGCATTGGCATTGAGACGAGAGCTAGTGCAAGACCATGTCTAGGAGA
CATAGCCTCGACATGTGAGCCAGTATA
Found at i:37598555 original size:137 final size:140
Alignment explanation
Indices: 37598245--37598601 Score: 350
Period size: 137 Copynumber: 2.5 Consensus size: 140
37598235 TGATATGTGT
* * * * *
37598245 GCTAGTGTAAGACCATGTCTGGGACATGGCATCA--A-CCACATTGCGTGAGCTAGTGTAAGGCC
1 GCTAGTGTCAGACCATGTCTAGGACATGGCATCAGCATCGACA---CGAGAGCTAGTGTAAGACC
* * *
37598307 ATGTCTGGGACATGGCATCGGCATCGACATCTGATCCAGTGTAAGACCATGTCTGGGACATGGAA
63 ATGTCTGGGACAT-G-A-C-GCATCGACATCTGAGCCAGTATAAGACCATGTCTGGGACATAGAA
37598372 TCGACATTGAGACGAGA
124 TCGACATTGAGACGAGA
* ** * **
37598389 GCTAGTGTCAGACCATGTCTGGGACATGGCATTGGCATTGTGACGAGAGCTAGTGTAAGACCATG
1 GCTAGTGTCAGACCATGTCTAGGACATGGCATCAGCATCGACACGAGAGCTAGTGTAAGACCATG
* * * * * * *
37598454 TCTGGGACATG-C-C-TTGACATGTGAGCCAGTATAAGACCATGTCTGGGGCTTAGCATTGGCAT
66 TCTGGGACATGACGCATCGACATCTGAGCCAGTATAAGACCATGTCTGGGACATAGAATCGACAT
*
37598516 TGAGACGAGC
131 TGAGACGAGA
* * * * *
37598526 GCTAGTG-CAAGACTATGTCTAGGATATGGCATCAGCCTCGACATGTGAGCTAGTGTAAGACCAT
1 GCTAGTGTC-AGACCATGTCTAGGACATGGCATCAGCATCGACACGAGAGCTAGTGTAAGACCAT
37598590 GTCTGGGACATG
65 GTCTGGGACATG
37598602 GCATCGGTAA
Statistics
Matches: 178, Mismatches: 31, Indels: 15
0.79 0.14 0.07
Matches are distributed among these distances:
136 1 0.01
137 111 0.62
138 1 0.01
140 1 0.01
143 1 0.01
144 61 0.34
146 1 0.01
147 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.24
Consensus pattern (140 bp):
GCTAGTGTCAGACCATGTCTAGGACATGGCATCAGCATCGACACGAGAGCTAGTGTAAGACCATG
TCTGGGACATGACGCATCGACATCTGAGCCAGTATAAGACCATGTCTGGGACATAGAATCGACAT
TGAGACGAGA
Found at i:37607552 original size:37 final size:37
Alignment explanation
Indices: 37607502--37607576 Score: 123
Period size: 37 Copynumber: 2.0 Consensus size: 37
37607492 CCTGGGACAG
*
37607502 AGCGTCATCCCCTGCGGCCCGATCATACGGCCCATTA
1 AGCGTCATCCCCTGCGGCCCAATCATACGGCCCATTA
* *
37607539 AGCGTCGTCCCCTGCGGCCCAATCATACGGCCTATTA
1 AGCGTCATCCCCTGCGGCCCAATCATACGGCCCATTA
37607576 A
1 A
37607577 CATCCACCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.20, C:0.39, G:0.21, T:0.20
Consensus pattern (37 bp):
AGCGTCATCCCCTGCGGCCCAATCATACGGCCCATTA
Found at i:37610955 original size:46 final size:46
Alignment explanation
Indices: 37610806--37610981 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
37610796 GGGTTATTGT
* * * * * ** *
37610806 GAGCTAGTGTAAGGCATGTCTGGGACATGCATTGACCA-CATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCG-GCATTAAGACGA
*
37610852 GAGTCAGTGTAAGACCATGTCTGGGACATGACATCGGCATTAAGACGA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCATTAAGACGA
* *
37610900 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCT-AGACGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCAT-TAAGACG-A
* *
37610947 -AGCCAGTGTAAGACATGTTTGGGACATACATCGGC
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
37610982 TATGAGATGT
Statistics
Matches: 110, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
46 56 0.51
47 34 0.31
48 20 0.18
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (46 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCATTAAGACGA
Found at i:37613703 original size:28 final size:27
Alignment explanation
Indices: 37613646--37613797 Score: 232
Period size: 27 Copynumber: 5.6 Consensus size: 27
37613636 TAAATTGTGC
* *
37613646 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
37613673 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
37613701 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
37613728 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGACTATGT
* *
37613756 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
37613783 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
37613798 GACTTAATAT
Statistics
Matches: 118, Mismatches: 5, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
27 66 0.56
28 52 0.44
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:37613711 original size:55 final size:55
Alignment explanation
Indices: 37613646--37613797 Score: 241
Period size: 55 Copynumber: 2.8 Consensus size: 55
37613636 TAAATTGTGC
* *
37613646 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* *
37613701 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
* * *
37613756 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCG
37613798 GACTTAATAT
Statistics
Matches: 90, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 90 1.00
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGT
Found at i:37618959 original size:24 final size:24
Alignment explanation
Indices: 37618867--37618995 Score: 75
Period size: 24 Copynumber: 5.3 Consensus size: 24
37618857 TCTGCTCTTT
* *
37618867 CGAGCT-ATGAATAGTAAGCTCCTC
1 CGAGCTGA-GAATAGTAAGCTCATA
* *
37618891 CTGAGCTGAGGACAGTAAGCTC-TA
1 C-GAGCTGAGAATAGTAAGCTCATA
* * * *
37618915 TTGATCT-AAAACAGTAAGCTCATA
1 -CGAGCTGAGAATAGTAAGCTCATA
*
37618939 CGAGCTGAGAATAGTAAGCTCTTA
1 CGAGCTGAGAATAGTAAGCTCATA
* * *
37618963 CGAGTTGATATATCGGTAAGCTCATA
1 CGAGCTGAGA-AT-AGTAAGCTCATA
*
37618989 TGAGCTG
1 CGAGCTG
37618996 TGGTGAGTCC
Statistics
Matches: 80, Mismatches: 18, Indels: 12
0.73 0.16 0.11
Matches are distributed among these distances:
23 16 0.20
24 30 0.38
25 18 0.22
26 16 0.20
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (24 bp):
CGAGCTGAGAATAGTAAGCTCATA
Found at i:37623632 original size:37 final size:37
Alignment explanation
Indices: 37623568--37623650 Score: 103
Period size: 37 Copynumber: 2.2 Consensus size: 37
37623558 TATACCTCAG
* *
37623568 AATTTTTCAATTTTTACAAAATAGTCCCTAAAATTCA
1 AATTTTACAATTTTTACAAAATAGTCCCTAAAATCCA
* ** *
37623605 AATTTTACAATTTTTACGATTTTGTCCCTAAAATCCA
1 AATTTTACAATTTTTACAAAATAGTCCCTAAAATCCA
*
37623642 AAATTTACA
1 AATTTTACA
37623651 CAATATTACA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.39, C:0.17, G:0.04, T:0.41
Consensus pattern (37 bp):
AATTTTACAATTTTTACAAAATAGTCCCTAAAATCCA
Found at i:37627374 original size:42 final size:43
Alignment explanation
Indices: 37627324--37627429 Score: 119
Period size: 42 Copynumber: 2.5 Consensus size: 43
37627314 TGATATTTAT
*
37627324 GTGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGATTTC
1 GTGTAAGACCATGTCTGGGACAGT-GGCATCGATATTTGATTAC
* *
37627366 GTGTAAGACCCTGTTTAGGG-CAGTGGCATCGATATTTGATTAC
1 GTGTAAGACCATGTCT-GGGACAGTGGCATCGATATTTGATTAC
* * *
37627409 ATGTAAAACCACGTCTGGGAC
1 GTGTAAGACCATGTCTGGGAC
37627430 GTTGACATTG
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
42 26 0.50
43 26 0.50
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (43 bp):
GTGTAAGACCATGTCTGGGACAGTGGCATCGATATTTGATTAC
Found at i:37634571 original size:43 final size:42
Alignment explanation
Indices: 37634455--37634572 Score: 121
Period size: 43 Copynumber: 2.8 Consensus size: 42
37634445 GATTTGAGAT
* * * *
37634455 TTACGTGTAAGACCATGTTTGGGACATCGGCATCATATTTGG
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCATCATATTTGA
** * *
37634497 TTTTGTGTAAGACCCTGTCTGGGGCAG-TGGCATCAATATTTGA
1 TTACGTGTAAGACCATGTCTGGGAC-GTTGGCATC-ATATTTGA
* *
37634540 TTACATGTAAGACCATATCTGGGACGTTGGCAT
1 TTACGTGTAAGACCATGTCTGGGACGTTGGCAT
37634573 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 14, Indels: 5
0.76 0.18 0.06
Matches are distributed among these distances:
42 27 0.46
43 32 0.54
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGACGTTGGCATCATATTTGA
Found at i:37636550 original size:26 final size:24
Alignment explanation
Indices: 37636518--37636570 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 24
37636508 AAATTTTTAT
37636518 CAAATTAATCATTTAAAATCATCCAC
1 CAAATTAATCA--TAAAATCATCCAC
* *
37636544 CAAATTATTCATAAAATCATTCAC
1 CAAATTAATCATAAAATCATCCAC
37636568 CAA
1 CAA
37636571 TCATATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 15 0.60
26 10 0.40
ACGTcount: A:0.47, C:0.23, G:0.00, T:0.30
Consensus pattern (24 bp):
CAAATTAATCATAAAATCATCCAC
Found at i:37640833 original size:6 final size:6
Alignment explanation
Indices: 37640822--37640893 Score: 76
Period size: 6 Copynumber: 11.8 Consensus size: 6
37640812 AACCAAAATG
* *
37640822 AGAATC AGAATC AAAATC AGTAA-C AGAATC AGAATC AGAATC AGAATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGAATC
*
37640870 AG-GTGAC AGAATC AGAATC AGAAT
1 AGAAT--C AGAATC AGAATC AGAAT
37640894 GTGAATGCAA
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
5 3 0.05
6 47 0.85
7 4 0.07
8 1 0.02
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:37640836 original size:18 final size:18
Alignment explanation
Indices: 37640801--37640868 Score: 75
Period size: 18 Copynumber: 3.8 Consensus size: 18
37640791 AAGAAACATT
** *
37640801 ATCAGAATTGGAACCAAA
1 ATCAGAATCAGAATCAAA
*
37640819 ATGAGAATCAGAATCAAA
1 ATCAGAATCAGAATCAAA
*
37640837 ATCAGTAA-CAGAATCAGA
1 ATCAG-AATCAGAATCAAA
37640855 ATCAGAATCAGAAT
1 ATCAGAATCAGAAT
37640869 TAGGTGACAG
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
17 2 0.05
18 38 0.90
19 2 0.05
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.18
Consensus pattern (18 bp):
ATCAGAATCAGAATCAAA
Found at i:37640882 original size:31 final size:30
Alignment explanation
Indices: 37640822--37640893 Score: 108
Period size: 31 Copynumber: 2.4 Consensus size: 30
37640812 AACCAAAATG
37640822 AGAATCAGAATCAAAATCAGTAACAGAATC
1 AGAATCAGAATCAAAATCAGTAACAGAATC
* * *
37640852 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAAAATCA-GTAACAGAATC
37640883 AGAATCAGAAT
1 AGAATCAGAAT
37640894 GTGAATGCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
30 17 0.45
31 21 0.55
ACGTcount: A:0.50, C:0.14, G:0.18, T:0.18
Consensus pattern (30 bp):
AGAATCAGAATCAAAATCAGTAACAGAATC
Found at i:37641081 original size:27 final size:27
Alignment explanation
Indices: 37641011--37641084 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
37641001 AGCATGGCTG
* *
37641011 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
* *
37641037 CCAG-ATACACATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
37641064 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
37641085 AACCCACCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 7
0.75 0.12 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.11
27 30 0.79
28 3 0.08
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:37641434 original size:27 final size:26
Alignment explanation
Indices: 37641395--37641477 Score: 121
Period size: 27 Copynumber: 3.1 Consensus size: 26
37641385 TCGATCGGTC
* *
37641395 AACAGATATTGTGACAGAGTCACCAG
1 AACAGATATTGTGGCAGAGCCACCAG
37641421 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
37641448 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
37641475 AAC
1 AAC
37641478 GCTTCCTCCA
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
26 8 0.15
27 44 0.85
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:37641706 original size:27 final size:27
Alignment explanation
Indices: 37641676--37641863 Score: 232
Period size: 27 Copynumber: 7.0 Consensus size: 27
37641666 GCGGCAAAAT
* * * *
37641676 GGTAATTTTACCCCACAAAGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37641703 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37641730 GATATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* **
37641757 GATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
37641784 GGTAATTCTACCCTATAAGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
37641811 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
37641838 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAAGGGTATTT
37641864 TAGTAATTTC
Statistics
Matches: 140, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 140 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:37641864 original size:54 final size:54
Alignment explanation
Indices: 37641676--37641871 Score: 259
Period size: 54 Copynumber: 3.6 Consensus size: 54
37641666 GCGGCAAAAT
* * * * **
37641676 GGTAATTTTACCCCACAAAGGTATCTCGGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
* * * *
37641730 GATATTTCTACCCTACAAGGGTA-TTTCGATAATTCTACCCTACGGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTTAG-TAATTCTACCCTACAGGGGTATTTC
* *
37641784 GGTAATTCTACCCTATAAGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
*
37641838 GGTAATTCTACCCTACAGGGGTATTTTAGTAATT
1 GGTAATTCTACCCTACAAGGGTATTTTAGTAATT
37641872 TCACAATTGA
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
53 2 0.02
54 117 0.95
55 4 0.03
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.36
Consensus pattern (54 bp):
GGTAATTCTACCCTACAAGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTC
Found at i:37641910 original size:27 final size:27
Alignment explanation
Indices: 37641880--37642421 Score: 560
Period size: 27 Copynumber: 20.1 Consensus size: 27
37641870 TTTCACAATT
*
37641880 GAGGGTAAAACAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
37641907 GAGGGTAAAATGATAATT-TCGTAAATC
1 GAGGGTAAAACGGTAATTCT-GTAAATC
* * * *
37641934 GAGTGTAAACCAGTAATTCTATAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* **
37641961 GA-GGTAAAACGGTAATTTTACAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
**
37641987 GAGGGTAAAATAGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* **
37642014 AAGGGTAAAATAGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
37642040 TGAGGGTAAAACGATAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
*
37642068 GAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
37642094 TGAGGGTAAAACGATAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* ** * ** *
37642122 GAGGGGAAAA-TATGAATTTTACAAATT
1 GAGGGTAAAACGGT-AATTCTGTAAATC
*
37642149 GAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
**
37642175 TGAGGGTAAAATAGTAATTCTGTAAA-C
1 -GAGGGTAAAACGGTAATTCTGTAAATC
*
37642202 TGAGGGTAAAATGGTAATTCTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* *
37642230 AAGGGTAAAATGGTAATTCTGTAAA-C
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
37642256 TGAGGGTAAAATGGTAATTTTGTAAATC
1 -GAGGGTAAAACGGTAATTCTGTAAATC
* ** *
37642284 GAGGGTAAAACGGTAATTTTAAAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
* *
37642311 AAGGGTAAAACGATAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
*
37642338 GAGGGTAAAACGGTAATTCTGTTAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
* * ** *
37642365 GAGGGTAAAACAGTAATTTTACAAATT
1 GAGGGTAAAACGGTAATTCTGTAAATC
37642392 GAGGGTAAAACGGTAATTCTGTAAATC
1 GAGGGTAAAACGGTAATTCTGTAAATC
37642419 GAG
1 GAG
37642422 AGTACTTTGG
Statistics
Matches: 432, Mismatches: 70, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
26 27 0.06
27 399 0.92
28 6 0.01
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (27 bp):
GAGGGTAAAACGGTAATTCTGTAAATC
Found at i:37644517 original size:47 final size:47
Alignment explanation
Indices: 37644463--37644557 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
37644453 TGAAATATTG
37644463 AATGCTTTCTTTTATTGTAACGTATTCTGGTCCAATGTGGTTATAAC
1 AATGCTTTCTTTTATTGTAACGTATTCTGGTCCAATGTGGTTATAAC
37644510 AATGCTTTCTTTTATTGTAACGTATTCTGGTCCAATGTGGTTATAAC
1 AATGCTTTCTTTTATTGTAACGTATTCTGGTCCAATGTGGTTATAAC
37644557 A
1 A
37644558 GTTCCTATAA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.44
Consensus pattern (47 bp):
AATGCTTTCTTTTATTGTAACGTATTCTGGTCCAATGTGGTTATAAC
Found at i:37646614 original size:26 final size:26
Alignment explanation
Indices: 37646578--37646627 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
37646568 AATTAATGCA
*
37646578 AATTAAACTGAAATATTGCATGTTCT
1 AATTAAACTGAAATATTGAATGTTCT
37646604 AATTAAACTGAAATATTGAATGTT
1 AATTAAACTGAAATATTGAATGTT
37646628 TTCTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (26 bp):
AATTAAACTGAAATATTGAATGTTCT
Found at i:37650774 original size:26 final size:26
Alignment explanation
Indices: 37650743--37650792 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
37650733 AATGAATGCA
*
37650743 AATTAATCTGAAATATTGAATGTTCT
1 AATTAAACTGAAATATTGAATGTTCT
37650769 AATTAAACTGAAATATTGAATGTT
1 AATTAAACTGAAATATTGAATGTT
37650793 TTCTTTTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.12, T:0.40
Consensus pattern (26 bp):
AATTAAACTGAAATATTGAATGTTCT
Found at i:37653781 original size:313 final size:313
Alignment explanation
Indices: 37653213--37653835 Score: 1219
Period size: 313 Copynumber: 2.0 Consensus size: 313
37653203 GCCACTCTGC
*
37653213 ATTAGTAAAGAGGACTCTTGAAAATCCTCTATTCAAAGACTTAACCCCAACGACAATTATAGCAA
1 ATTAGTAAAGAGGACTCTTGAAAATCCTCTATTCAAAGACCTAACCCCAACGACAATTATAGCAA
37653278 AGAGCATTCAGACATGGAATAACTGCCTTGCATTGATCGATTCACCATCTCCATCTGCTTAAGGA
66 AGAGCATTCAGACATGGAATAACTGCCTTGCATTGATCGATTCACCATCTCCATCTGCTTAAGGA
37653343 TATATGATTGCTTAAGCTAACAAACGGTTACAAGACGTGACGGGCCCGAAATTGTTCTTTTGTCT
131 TATATGATTGCTTAAGCTAACAAACGGTTACAAGACGTGACGGGCCCGAAATTGTTCTTTTGTCT
37653408 TTATTTTTGATATTGTTCCGAAAGCTTTTTTAAAATGTGTCATTAAATTTAAGCCAAGTTAAATT
196 TTATTTTTGATATTGTTCCGAAAGCTTTTTTAAAATGTGTCATTAAATTTAAGCCAAGTTAAATT
37653473 ATATTGAGTCCTAAGAAAGTTAAATGGTTCTAGAGAAGCCATTACTTAATACA
261 ATATTGAGTCCTAAGAAAGTTAAATGGTTCTAGAGAAGCCATTACTTAATACA
*
37653526 ATTAGTAAAGAGGACTCTTGAAAATCCTCTATTCAAAGACCTAACCCCAACGACAATTATAGCGA
1 ATTAGTAAAGAGGACTCTTGAAAATCCTCTATTCAAAGACCTAACCCCAACGACAATTATAGCAA
37653591 AGAGCATTCAGACATGGAATAACTGCCTTGCATTGATCGATTCACCATCTCCATCTGCTTAAGGA
66 AGAGCATTCAGACATGGAATAACTGCCTTGCATTGATCGATTCACCATCTCCATCTGCTTAAGGA
*
37653656 TATATGATTGCTTAAGCTAACAAACGGTTACAAGACGTGACGGGCTCGAAATTGTTCTTTTGTCT
131 TATATGATTGCTTAAGCTAACAAACGGTTACAAGACGTGACGGGCCCGAAATTGTTCTTTTGTCT
37653721 TTATTTTTGATATTGTTCCGAAAGCTTTTTTAAAATGTGTCATTAAATTTAAGCCAAGTTAAATT
196 TTATTTTTGATATTGTTCCGAAAGCTTTTTTAAAATGTGTCATTAAATTTAAGCCAAGTTAAATT
37653786 ATATTGAGTCCTAAGAAAGTTAAATGGTTCTAGAGAAGCCATTACTTAAT
261 ATATTGAGTCCTAAGAAAGTTAAATGGTTCTAGAGAAGCCATTACTTAAT
37653836 TCATGATGAT
Statistics
Matches: 307, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
313 307 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (313 bp):
ATTAGTAAAGAGGACTCTTGAAAATCCTCTATTCAAAGACCTAACCCCAACGACAATTATAGCAA
AGAGCATTCAGACATGGAATAACTGCCTTGCATTGATCGATTCACCATCTCCATCTGCTTAAGGA
TATATGATTGCTTAAGCTAACAAACGGTTACAAGACGTGACGGGCCCGAAATTGTTCTTTTGTCT
TTATTTTTGATATTGTTCCGAAAGCTTTTTTAAAATGTGTCATTAAATTTAAGCCAAGTTAAATT
ATATTGAGTCCTAAGAAAGTTAAATGGTTCTAGAGAAGCCATTACTTAATACA
Found at i:37661963 original size:251 final size:251
Alignment explanation
Indices: 37661520--37662021 Score: 986
Period size: 251 Copynumber: 2.0 Consensus size: 251
37661510 TGCAAGGAAA
37661520 TATCCTCCAAGGGACATGCACTATTATTTGTAATAGTTCCTTGCCTCTGGACTCATTTGTTTCAT
1 TATCCTCCAAGGGACATGCACTATTATTTGTAATAGTTCCTTGCCTCTGGACTCATTTGTTTCAT
37661585 TTTCCATTTTCACTCCTTCGATACTTATCTAATAGTTATGACCTCTTTCTTTTCCGTATTGGAGA
66 TTTCCATTTTCACTCCTTCGATACTTATCTAATAGTTATGACCTCTTTCTTTTCCGTATTGGAGA
37661650 GGCAATCTTGAAATACTCGTCGAATGTGTTGTATCACATCAAAGTCTTAACTTGATTTCCTTATT
131 GGCAATCTTGAAATACTCGTCGAATGTGTTGTATCACATCAAAGTCTTAACTTGATTTCCTTATT
*
37661715 CTTCTGTCTTTAGATTACTTTTTTTATCTAGATTGAGAATGAAACTCCAAATATGT
196 CTTCTGTCTTTAGATTACTTTTTTTATCCAGATTGAGAATGAAACTCCAAATATGT
37661771 TATCCTCCAAGGGACATGCACTATTATTTGTAATAGTTCCTTGCCTCTGGACTCATTTGTTTCAT
1 TATCCTCCAAGGGACATGCACTATTATTTGTAATAGTTCCTTGCCTCTGGACTCATTTGTTTCAT
37661836 TTTCCATTTTCACTCCTTCGATACTTATCTAATAGTTATGACCTCTTTCTTTTCCGTATTGGAGA
66 TTTCCATTTTCACTCCTTCGATACTTATCTAATAGTTATGACCTCTTTCTTTTCCGTATTGGAGA
37661901 GGCAATCTTGAAATACTCGTCGAATGTGTTGTATCACATCAAAGTCTTAACTTGATTTCCTTATT
131 GGCAATCTTGAAATACTCGTCGAATGTGTTGTATCACATCAAAGTCTTAACTTGATTTCCTTATT
*
37661966 CTTCTGTCTTTAGATTACTTTTTTTATCCAGATTGAGAATGAAACTCCAATTATGT
196 CTTCTGTCTTTAGATTACTTTTTTTATCCAGATTGAGAATGAAACTCCAAATATGT
37662022 CGGCGACGTA
Statistics
Matches: 249, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
251 249 1.00
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.42
Consensus pattern (251 bp):
TATCCTCCAAGGGACATGCACTATTATTTGTAATAGTTCCTTGCCTCTGGACTCATTTGTTTCAT
TTTCCATTTTCACTCCTTCGATACTTATCTAATAGTTATGACCTCTTTCTTTTCCGTATTGGAGA
GGCAATCTTGAAATACTCGTCGAATGTGTTGTATCACATCAAAGTCTTAACTTGATTTCCTTATT
CTTCTGTCTTTAGATTACTTTTTTTATCCAGATTGAGAATGAAACTCCAAATATGT
Found at i:37663296 original size:32 final size:31
Alignment explanation
Indices: 37663251--37663346 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
37663241 CTTAGATAAT
37663251 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
37663282 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
37663314 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
37663345 TT
1 TT
37663347 GTAATTTGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:37670977 original size:40 final size:39
Alignment explanation
Indices: 37670940--37671031 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
37670930 GCTACTCGTT
*
37670940 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
37670980 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
37671019 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37671032 ATCTCAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:37671011 original size:39 final size:40
Alignment explanation
Indices: 37670921--37671084 Score: 167
Period size: 40 Copynumber: 4.1 Consensus size: 40
37670911 CGGAATTTAA
** *
37670921 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
37670961 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37671000 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTCAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37671040 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37671080 CCGGA
1 CCGGA
37671085 CATCATTCAA
Statistics
Matches: 103, Mismatches: 14, Indels: 14
0.79 0.11 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.31
40 56 0.54
41 12 0.12
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37675723 original size:119 final size:119
Alignment explanation
Indices: 37675512--37675752 Score: 473
Period size: 119 Copynumber: 2.0 Consensus size: 119
37675502 CAACTGAGCT
37675512 TTCAACTCTTTTAACTCGGTTGGTGCCATACGATACGGAGCCATCGAAATCGGCGTAGTCCCAGG
1 TTCAACTCTTTTAACTCGGTTGGTGCCATACGATACGGAGCCATCGAAATCGGCGTAGTCCCAGG
37675577 TACAAGCTCAATACCAAACTCTATCTCCCGAACAGGTGGTAAACCCGGTAATTC
66 TACAAGCTCAATACCAAACTCTATCTCCCGAACAGGTGGTAAACCCGGTAATTC
37675631 TTCAACTCTTTTAACTCGGTTGGTGCCATACGATACGGAGCCATCGAAATCGGCGTAGTCCCAGG
1 TTCAACTCTTTTAACTCGGTTGGTGCCATACGATACGGAGCCATCGAAATCGGCGTAGTCCCAGG
*
37675696 TACAAGCTCAATACCAAACTCTATCTCCCGAACAGGTGGTAAACCTGGTAATTC
66 TACAAGCTCAATACCAAACTCTATCTCCCGAACAGGTGGTAAACCCGGTAATTC
37675750 TTC
1 TTC
37675753 GGGAAAAACA
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
119 121 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (119 bp):
TTCAACTCTTTTAACTCGGTTGGTGCCATACGATACGGAGCCATCGAAATCGGCGTAGTCCCAGG
TACAAGCTCAATACCAAACTCTATCTCCCGAACAGGTGGTAAACCCGGTAATTC
Found at i:37679264 original size:40 final size:40
Alignment explanation
Indices: 37679227--37679530 Score: 393
Period size: 40 Copynumber: 7.7 Consensus size: 40
37679217 GCTACTCGTT
* *
37679227 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
37679267 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
37679307 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
37679346 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
37679386 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
37679425 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
37679465 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
37679506 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37679531 CATCATTCAA
Statistics
Matches: 234, Mismatches: 24, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
39 75 0.32
40 146 0.62
41 13 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37679338 original size:79 final size:79
Alignment explanation
Indices: 37679227--37679530 Score: 434
Period size: 79 Copynumber: 3.8 Consensus size: 79
37679217 GCTACTCGTT
* * *
37679227 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
37679292 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
*
37679307 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
37679371 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
*
37679386 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
*
37679450 ATTTAGTAACTTGCA
65 ATTTAGTAACTCGCA
* * * * * *
37679465 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCG
37679529 GA
64 GA
37679531 CATCATTCAA
Statistics
Matches: 208, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
78 1 0.00
79 150 0.72
80 48 0.23
81 9 0.04
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TTTAGTAACTCGCA
Found at i:37679449 original size:119 final size:119
Alignment explanation
Indices: 37679227--37679530 Score: 409
Period size: 119 Copynumber: 2.6 Consensus size: 119
37679217 GCTACTCGTT
* * *
37679227 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
* * *
37679291 GATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
65 GAATTAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
*
37679346 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * *
37679410 AATTAGTATCTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTTGCA
66 AATTAGTAACTCGCACAAATGCCTTCGGG-CTTAACCCGGAATTAGTAACTCGCA
* * * * *
37679465 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
37679528 GGA
64 GGA
37679531 CATCATTCAA
Statistics
Matches: 164, Mismatches: 16, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
118 39 0.24
119 104 0.63
120 21 0.13
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (119 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCACAAATGCCTTCGGGCTTAACCCGGAATTAGTAACTCGCA
Found at i:37686726 original size:56 final size:55
Alignment explanation
Indices: 37686654--37686760 Score: 205
Period size: 56 Copynumber: 1.9 Consensus size: 55
37686644 CCAAAATTGT
37686654 ACCAAAAGGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCGAAATCCTTTGC
1 ACCAAAAGGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCGAAATCCTTTGC
37686709 ACCAAAAGGGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCGAAATCCT
1 ACCAAAA-GGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCGAAATCCT
37686761 GAGTTCGATA
Statistics
Matches: 51, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
55 7 0.14
56 44 0.86
ACGTcount: A:0.22, C:0.20, G:0.34, T:0.24
Consensus pattern (55 bp):
ACCAAAAGGGGGGGGCTTTGATAGTGTGGGCGACTTCGACTTCGAAATCCTTTGC
Found at i:37687281 original size:39 final size:40
Alignment explanation
Indices: 37687164--37687340 Score: 184
Period size: 40 Copynumber: 4.5 Consensus size: 40
37687154 GCTACTCGTT
* *
37687164 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
*
37687204 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
37687244 CAAATGCCTTCGGG-CTTATCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
37687283 CAAATGCC-TC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
37687323 CAAA-GCCTTCGGGACTTA
1 CAAATGCCTTCGGGACTTA
37687341 GCCCAGACAT
Statistics
Matches: 116, Mismatches: 15, Indels: 12
0.81 0.10 0.08
Matches are distributed among these distances:
37 2 0.02
38 2 0.02
39 46 0.40
40 61 0.53
41 5 0.04
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37689538 original size:38 final size:38
Alignment explanation
Indices: 37689467--37689618 Score: 173
Period size: 38 Copynumber: 3.9 Consensus size: 38
37689457 ATTTGATGTG
*
37689467 TATCCGGGCTTAAAGAT-CCGCAGGCTATA-TGCTGGAATTA
1 TATCCGGG-TT-AA-ATCCCGCAGGCT-TAGTGCTGGTATTA
* *
37689507 TATCCGGGTTAAATCCCACAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
37689545 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
* * * *
37689583 TATTCGAGCTTAAAGTCCCGCAGGTTTTGTGCTGGT
1 TATCCG-GGTTAAA-TCCCGCAGGCTTAGTGCTGGT
37689619 GACTGGATTC
Statistics
Matches: 99, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
37 3 0.03
38 61 0.62
39 8 0.08
40 27 0.27
ACGTcount: A:0.22, C:0.21, G:0.26, T:0.32
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTATTA
Found at i:37690205 original size:177 final size:177
Alignment explanation
Indices: 37689909--37690262 Score: 699
Period size: 177 Copynumber: 2.0 Consensus size: 177
37689899 TGAGCTATAA
37689909 AGTAAAGAAAAGTATGTGCTGAAATTTCTTTGTGTATTCATATATTTATATACATATATATTCGG
1 AGTAAAGAAAAGTATGTGCTGAAATTTCTTTGTGTATTCATATATTTATATACATATATATTCGG
*
37689974 CCAATAGGCTTTTTAATTTGTGTACTTGTGTATATTCGGCCAAGTGATAACTAATTAGAATATTA
66 CCAATAGGCTTTTTAATTGGTGTACTTGTGTATATTCGGCCAAGTGATAACTAATTAGAATATTA
37690039 GTTTTGTGATACTAAATGCTCGATTTAAATGGCAAGTTTTAATTGTT
131 GTTTTGTGATACTAAATGCTCGATTTAAATGGCAAGTTTTAATTGTT
37690086 AGTAAAGAAAAGTATGTGCTGAAATTTCTTTGTGTATTCATATATTTATATACATATATATTCGG
1 AGTAAAGAAAAGTATGTGCTGAAATTTCTTTGTGTATTCATATATTTATATACATATATATTCGG
37690151 CCAATAGGCTTTTTAATTGGTGTACTTGTGTATATTCGGCCAAGTGATAACTAATTAGAATATTA
66 CCAATAGGCTTTTTAATTGGTGTACTTGTGTATATTCGGCCAAGTGATAACTAATTAGAATATTA
37690216 GTTTTGTGATACTAAATGCTCGATTTAAATGGCAAGTTTTAATTGTT
131 GTTTTGTGATACTAAATGCTCGATTTAAATGGCAAGTTTTAATTGTT
37690263 TGTATTGCTT
Statistics
Matches: 176, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
177 176 1.00
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.42
Consensus pattern (177 bp):
AGTAAAGAAAAGTATGTGCTGAAATTTCTTTGTGTATTCATATATTTATATACATATATATTCGG
CCAATAGGCTTTTTAATTGGTGTACTTGTGTATATTCGGCCAAGTGATAACTAATTAGAATATTA
GTTTTGTGATACTAAATGCTCGATTTAAATGGCAAGTTTTAATTGTT
Found at i:37691311 original size:47 final size:47
Alignment explanation
Indices: 37691232--37691336 Score: 140
Period size: 47 Copynumber: 2.2 Consensus size: 47
37691222 TTCTTCTCTT
* *
37691232 TTTCTCAATCGGTTTCCTTTTGACAGATTGCTTCTAGTTCTTTTTCCC
1 TTTCTCAATCGGTTTCCTCTTAACAGATTGCTTCTAGTTCTTTTT-CC
* * *
37691280 TTTCTCAATCTGTTTCC-CTTAACTGATTGCTTCTTGTTCTTTTTCC
1 TTTCTCAATCGGTTTCCTCTTAACAGATTGCTTCTAGTTCTTTTTCC
37691326 TTCTCTCAATC
1 TT-TCTCAATC
37691337 AGTTCTTAGC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
46 4 0.08
47 31 0.61
48 16 0.31
ACGTcount: A:0.12, C:0.27, G:0.10, T:0.51
Consensus pattern (47 bp):
TTTCTCAATCGGTTTCCTCTTAACAGATTGCTTCTAGTTCTTTTTCC
Found at i:37698405 original size:25 final size:26
Alignment explanation
Indices: 37698353--37698443 Score: 125
Period size: 26 Copynumber: 3.6 Consensus size: 26
37698343 GAGGAAGTGT
* *
37698353 AAAAGGGC-TATGCCCCA-ATTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
37698377 AAAAGGGC-TTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* *
37698402 AAAAGGGCTTTTGCCCCAGTTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCG
37698428 AAAAGGGCTTTTGCCC
1 AAAAGGGCTTTTGCCC
37698444 TAGTCATTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
24 16 0.26
25 14 0.23
26 31 0.51
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.24
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:37698461 original size:25 final size:26
Alignment explanation
Indices: 37698377--37698461 Score: 72
Period size: 26 Copynumber: 3.4 Consensus size: 26
37698367 CCAATTACCG
* *
37698377 AAAAG-GGC-TTTGCCCCAGTTTACC
1 AAAAGAGGCTTTTGCCCCAGTTCATC
*
37698401 GAAAAG-GGCTTTTGCCCCAGTTTATC
1 -AAAAGAGGCTTTTGCCCCAGTTCATC
* *
37698427 AAAA-AGGGCTTTTGCCCTAG-TCATT
1 AAAAGA-GGCTTTTGCCCCAGTTCATC
37698452 AAAAGAGGCT
1 AAAAGAGGCT
37698462 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 8
0.81 0.06 0.12
Matches are distributed among these distances:
25 23 0.44
26 29 0.56
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
AAAAGAGGCTTTTGCCCCAGTTCATC
Found at i:37698706 original size:31 final size:31
Alignment explanation
Indices: 37698668--37698751 Score: 143
Period size: 31 Copynumber: 2.7 Consensus size: 31
37698658 TTGTTACAGT
37698668 AAAGGCTTCGGCCCAGTGATATGAATAATGA
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
37698699 AAAGGCTTCGGCCCAGTGATATGAATAATGT
1 AAAGGCTTCGGCCCAGTGATATGAATAATGA
*
37698730 AAAGGCTTCGACCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
37698752 CTGAGATTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
30 5 0.10
31 46 0.90
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGAATAATGA
Found at i:37700530 original size:43 final size:42
Alignment explanation
Indices: 37700437--37700603 Score: 156
Period size: 43 Copynumber: 3.9 Consensus size: 42
37700427 GGTTATCGAG
* *
37700437 ATGTGATTACATGTAAGGCCATGTCTGGGACATTGGCATTGT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
37700479 ATTGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGTT
1 A-TGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
* *** * * * * * *
37700523 ATATGATTTTGTGTAAGACCCTGTTTGGGATAGTGGTATCAAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATC-GT
* * * *
37700566 ATGTGATAACGTGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCAT
37700604 TGTGTGACCT
Statistics
Matches: 102, Mismatches: 20, Indels: 6
0.80 0.16 0.05
Matches are distributed among these distances:
42 6 0.06
43 94 0.92
44 2 0.02
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (42 bp):
ATGTGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
Found at i:37708859 original size:23 final size:23
Alignment explanation
Indices: 37708813--37708889 Score: 84
Period size: 23 Copynumber: 3.3 Consensus size: 23
37708803 TTGTAAGAAG
37708813 TTACTGTTCTCAGCTCG-TATGAGC
1 TTACTGTTCT-AGCTCGTTA-GAGC
*
37708837 TTACTGTTCTAGCTTGTTAGAGC
1 TTACTGTTCTAGCTCGTTAGAGC
* * **
37708860 TTACCGTTTTAGCTCAATAGAGC
1 TTACTGTTCTAGCTCGTTAGAGC
37708883 TTACTGT
1 TTACTGT
37708890 CATCAGCTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
23 33 0.73
24 12 0.27
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.40
Consensus pattern (23 bp):
TTACTGTTCTAGCTCGTTAGAGC
Found at i:37709073 original size:20 final size:20
Alignment explanation
Indices: 37709030--37709073 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
37709020 CATAAATTCT
* *
37709030 GTTTATATGGATGAAGTAAT
1 GTTTATACGGATGAAGTAAG
* *
37709050 GTTTATACGGATGAGGTACG
1 GTTTATACGGATGAAGTAAG
37709070 GTTT
1 GTTT
37709074 TCAAATGAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.05, G:0.30, T:0.39
Consensus pattern (20 bp):
GTTTATACGGATGAAGTAAG
Found at i:37718257 original size:13 final size:13
Alignment explanation
Indices: 37718239--37718265 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37718229 GAAGTAATCG
37718239 CACACGGGCGTGT
1 CACACGGGCGTGT
37718252 CACACGGGCGTGT
1 CACACGGGCGTGT
37718265 C
1 C
37718266 CCTGCCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:37725805 original size:21 final size:21
Alignment explanation
Indices: 37725779--37725821 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
37725769 CCATAAGGAA
37725779 TGACTCCTTATCGGTTGGTTT
1 TGACTCCTTATCGGTTGGTTT
37725800 TGACTCCTTATCGGTTGGTTT
1 TGACTCCTTATCGGTTGGTTT
37725821 T
1 T
37725822 TGGGAAGGCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.09, C:0.19, G:0.23, T:0.49
Consensus pattern (21 bp):
TGACTCCTTATCGGTTGGTTT
Found at i:37733115 original size:30 final size:30
Alignment explanation
Indices: 37733081--37733141 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
37733071 TCCTTAACTC
37733081 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
37733111 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
37733141 A
1 A
37733142 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:37736829 original size:27 final size:27
Alignment explanation
Indices: 37736806--37737096 Score: 347
Period size: 27 Copynumber: 10.7 Consensus size: 27
37736796 CTATTTTTCG
*
37736806 CTTATGGGGTAAAATGATTGTTTTGCC
1 CTTATGAGGTAAAATGATTGTTTTGCC
* *
37736833 CTTATGAGGTAAAATGACTATTTTGCC
1 CTTATGAGGTAAAATGATTGTTTTGCC
* *
37736860 TTTAT-AGGGTAAAATGACTGTTTTGCC
1 CTTATGA-GGTAAAATGATTGTTTTGCC
*
37736887 CTTATGAGGTAAAATGATTGTTTTGCT
1 CTTATGAGGTAAAATGATTGTTTTGCC
*
37736914 CTTATGTGGTAAAATGATTGTTTTGCC
1 CTTATGAGGTAAAATGATTGTTTTGCC
*
37736941 CTTTATGGAGG-AAAATGATTGTTTTTCC
1 C-TTAT-GAGGTAAAATGATTGTTTTGCC
* * *
37736969 CTTATG-GAGTAAAATGACTATTTTACC
1 CTTATGAG-GTAAAATGATTGTTTTGCC
* *
37736996 CTTATGAGGTAAAATGACTGTCTTGCC
1 CTTATGAGGTAAAATGATTGTTTTGCC
* * *
37737023 CTTTTGTGGTAAAATGATTATTTTGCC
1 CTTATGAGGTAAAATGATTGTTTTGCC
37737050 CTTATGAGGTAAAATGATTGTTTTGCC
1 CTTATGAGGTAAAATGATTGTTTTGCC
* *
37737077 CCTAT-ATGGTAAGATGATTG
1 CTTATGA-GGTAAAATGATTG
37737097 ATATGCCCCT
Statistics
Matches: 228, Mismatches: 28, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
25 1 0.00
26 4 0.02
27 197 0.86
28 23 0.10
29 3 0.01
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (27 bp):
CTTATGAGGTAAAATGATTGTTTTGCC
Found at i:37737054 original size:136 final size:136
Alignment explanation
Indices: 37736807--37737077 Score: 413
Period size: 136 Copynumber: 2.0 Consensus size: 136
37736797 TATTTTTCGC
* *
37736807 TTATGGGGTAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTATTTTGCCTTTATAGGGTAA
1 TTATGGGGTAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTATTTTACCCTTATAGGGTAA
* * * *
37736872 AATGACTGTTTTGCCCTTATGAGGTAAAATGATTGTTTTGCTCTTATGTGGTAAAATGATTGTTT
66 AATGACTGTCTTGCCCTTATGAGGTAAAATGATTATTTTGCCCTTATGAGGTAAAATGATTGTTT
37736937 TGCCCT
131 TGCCCT
*
37736943 TTATGGAGG-AAAATGATTGTTTTTCCCTTATG-GAGTAAAATGACTATTTTACCCTTAT-GAGG
1 TTATGG-GGTAAAATGATTGTTTTGCCCTTATGAG-GTAAAATGACTATTTTACCCTTATAG-GG
* *
37737005 TAAAATGACTGTCTTGCCCTTTTGTGGTAAAATGATTATTTTGCCCTTATGAGGTAAAATGATTG
63 TAAAATGACTGTCTTGCCCTTATGAGGTAAAATGATTATTTTGCCCTTATGAGGTAAAATGATTG
37737070 TTTTGCCC
128 TTTTGCCC
37737078 CTATATGGTA
Statistics
Matches: 123, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
135 2 0.02
136 119 0.97
137 2 0.02
ACGTcount: A:0.26, C:0.12, G:0.21, T:0.41
Consensus pattern (136 bp):
TTATGGGGTAAAATGATTGTTTTGCCCTTATGAGGTAAAATGACTATTTTACCCTTATAGGGTAA
AATGACTGTCTTGCCCTTATGAGGTAAAATGATTATTTTGCCCTTATGAGGTAAAATGATTGTTT
TGCCCT
Found at i:37737103 original size:27 final size:27
Alignment explanation
Indices: 37737029--37737108 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
37737019 TGCCCTTTTG
* *
37737029 TGGTAAAATGATT-ATTTTGCCCTTATGA
1 TGGTAAAATGATTGA-TATGCCCCTAT-A
* *
37737057 -GGTAAAATGATTGTTTTGCCCCTATA
1 TGGTAAAATGATTGATATGCCCCTATA
*
37737083 TGGTAAGATGATTGATATGCCCCTAT
1 TGGTAAAATGATTGATATGCCCCTAT
37737109 GTGATGTATG
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 44 0.98
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.39
Consensus pattern (27 bp):
TGGTAAAATGATTGATATGCCCCTATA
Found at i:37737457 original size:18 final size:18
Alignment explanation
Indices: 37737434--37737483 Score: 73
Period size: 18 Copynumber: 2.8 Consensus size: 18
37737424 GGACTTGTAT
* *
37737434 ACTATTACTTCATTGATC
1 ACTATTACTGCACTGATC
*
37737452 ACTATTACTGCACTGATT
1 ACTATTACTGCACTGATC
37737470 ACTATTACTGCACT
1 ACTATTACTGCACT
37737484 ATTTATTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.40
Consensus pattern (18 bp):
ACTATTACTGCACTGATC
Found at i:37738637 original size:15 final size:15
Alignment explanation
Indices: 37738617--37738646 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
37738607 ACTTCCTTGG
37738617 AGTAATTCCTTACTC
1 AGTAATTCCTTACTC
37738632 AGTAATTCCTTACTC
1 AGTAATTCCTTACTC
37738647 CCTATTCTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.27, G:0.07, T:0.40
Consensus pattern (15 bp):
AGTAATTCCTTACTC
Found at i:37742130 original size:59 final size:59
Alignment explanation
Indices: 37742033--37742157 Score: 214
Period size: 59 Copynumber: 2.1 Consensus size: 59
37742023 AACCATGAGA
* *
37742033 ATGAGAATAGTAATGTAATGGGTATGAGGTTTTCCTAATATTGATTTAACACGGAATGT
1 ATGATAATAGTAATGTAATGGGTATAAGGTTTTCCTAATATTGATTTAACACGGAATGT
* *
37742092 ATGATAATAGTTATGTAATGGGTATAAGGTTTTCCTAATCTTGATTTAACACGGAATGT
1 ATGATAATAGTAATGTAATGGGTATAAGGTTTTCCTAATATTGATTTAACACGGAATGT
37742151 ATGATAA
1 ATGATAA
37742158 CTAACCTAAG
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.34, C:0.07, G:0.22, T:0.37
Consensus pattern (59 bp):
ATGATAATAGTAATGTAATGGGTATAAGGTTTTCCTAATATTGATTTAACACGGAATGT
Found at i:37746259 original size:266 final size:267
Alignment explanation
Indices: 37745785--37746321 Score: 1040
Period size: 266 Copynumber: 2.0 Consensus size: 267
37745775 AAATAAATGG
37745785 CTAAAGTAATAAAAATTAAGCGTTCCTAATATCTCAGTTCCTCGGCAACTGCGCCAAAAACTTGT
1 CTAAAGTAATAAAAATTAAGCGTTCCTAATATCTCAGTTCCTCGGCAACTGCGCCAAAAACTTGT
37745850 TCGTGTGATTTCATGATAGGATTTAAATATTTATAATTAATCGTTCTAGAAACTAACTATTATCG
66 TCGTGTGATTTCATGATAGGATTTAAATATTTATAATTAATCGTTCTAGAAACTAACTATTATCG
37745915 CGATGAATGCAAGTGTACCTATCGAATAGAAGTATAGTTTTAGCAAGACCGGATTGTCGAACCCA
131 CGATGAATGCAAGTGTACCTATCGAATAGAAGTATAGTTTTAGCAAGACCGGATTGTCGAACCCA
* *
37745980 AAGGAACTAAAAGTACTAGTAATGACTGTCTTTTTATTATCTAGCTTAAAAATAAAGAGGTTTTT
196 AAGGAACTAAAAGTACTAGTAATGACTGTCTTTTAATTATCTAGCCTAAAAATAAAGAGGTTTTT
37746045 GTTTT-A
261 GTTTTAA
37746051 CTAAAGTAATAAAAATTAAGCGTTCCTAATATCTCAGTTCCTCGGCAACTGCGCCAAAAACTTGT
1 CTAAAGTAATAAAAATTAAGCGTTCCTAATATCTCAGTTCCTCGGCAACTGCGCCAAAAACTTGT
37746116 TCGTGTGATTTCATGATAGGATTTAAATATTTATAATTAATCGTTCTAGAAACTAACTATTATCG
66 TCGTGTGATTTCATGATAGGATTTAAATATTTATAATTAATCGTTCTAGAAACTAACTATTATCG
37746181 CGATGAATGCAAGTGTACCTATCGAATAGAAGTATAGTTTTAGCAAGACCGGATTGTCGAACCCA
131 CGATGAATGCAAGTGTACCTATCGAATAGAAGTATAGTTTTAGCAAGACCGGATTGTCGAACCCA
*
37746246 AAGGAACTAAAAGTACTAGTAATGACTGTCTTTTAATTATCTAGCCTAAGAATAAAGAGGTTTTT
196 AAGGAACTAAAAGTACTAGTAATGACTGTCTTTTAATTATCTAGCCTAAAAATAAAGAGGTTTTT
37746311 GTTTTAA
261 GTTTTAA
37746318 CTAA
1 CTAA
37746322 CTAATTATCT
Statistics
Matches: 267, Mismatches: 3, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
266 262 0.98
267 5 0.02
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (267 bp):
CTAAAGTAATAAAAATTAAGCGTTCCTAATATCTCAGTTCCTCGGCAACTGCGCCAAAAACTTGT
TCGTGTGATTTCATGATAGGATTTAAATATTTATAATTAATCGTTCTAGAAACTAACTATTATCG
CGATGAATGCAAGTGTACCTATCGAATAGAAGTATAGTTTTAGCAAGACCGGATTGTCGAACCCA
AAGGAACTAAAAGTACTAGTAATGACTGTCTTTTAATTATCTAGCCTAAAAATAAAGAGGTTTTT
GTTTTAA
Found at i:37750206 original size:17 final size:18
Alignment explanation
Indices: 37750184--37750218 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
37750174 ATTTGGGCTT
37750184 TGTAGGCC-ACACGGGCC
1 TGTAGGCCTACACGGGCC
*
37750201 TGTAGGCCTACATGGGCC
1 TGTAGGCCTACACGGGCC
37750219 GCACTATGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.17, C:0.31, G:0.34, T:0.17
Consensus pattern (18 bp):
TGTAGGCCTACACGGGCC
Found at i:37750489 original size:27 final size:27
Alignment explanation
Indices: 37750334--37750481 Score: 170
Period size: 27 Copynumber: 5.5 Consensus size: 27
37750324 TAATTTGATG
* * *
37750334 AAATGACTATTTTACCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
* *
37750361 AAATGACTGTTTTGTCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
***
37750388 AAATGACTGTTTTGCCCAGGTGAGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
* *
37750415 AAATGATTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
* * *
37750442 AAATAATTTTTTTGCCCTTATGAGGTA
1 AAATGACTGTTTTGCCCTTATGAGGTA
*
37750469 AAATGACTATTTT
1 AAATGACTGTTTT
37750482 AACCTTATAT
Statistics
Matches: 102, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 102 1.00
ACGTcount: A:0.27, C:0.12, G:0.21, T:0.40
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGAGGTA
Found at i:37750495 original size:27 final size:26
Alignment explanation
Indices: 37750334--37750502 Score: 131
Period size: 27 Copynumber: 6.3 Consensus size: 26
37750324 TAATTTGATG
* * *
37750334 AAATGACTATTTTACCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTAT-AGGTA
* *
37750361 AAATGACTGTTTTGTCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTAT-AGGTA
***
37750388 AAATGACTGTTTTGCCCAGGTGAGGTA
1 AAATGACTGTTTTGCCCTTAT-AGGTA
* *
37750415 AAATGATTGTTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTAT-AGGTA
* * *
37750442 AAATAATTTTTTTGCCCTTATGAGGTA
1 AAATGACTGTTTTGCCCTTAT-AGGTA
* **
37750469 AAATGACTATTTTAACCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATA-GGTA
*
37750496 AGATGAC
1 AAATGAC
37750503 CGATATGCCC
Statistics
Matches: 119, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
26 1 0.01
27 118 0.99
ACGTcount: A:0.28, C:0.12, G:0.21, T:0.38
Consensus pattern (26 bp):
AAATGACTGTTTTGCCCTTATAGGTA
Found at i:37754132 original size:107 final size:108
Alignment explanation
Indices: 37753969--37754244 Score: 302
Period size: 107 Copynumber: 2.6 Consensus size: 108
37753959 GAAGTAATTA
* * * * * * * *
37753969 TTTTTCCCTTACGGGGTTAAATGATTCTTTTTCCCTTATGGGGTGAAATGACTGTTTTGCCCTTA
1 TTTTCCCCTTATGGGGTAAAATGACTATTTTTCCATTATGGGGTAAAATGACTGTTTTGCCATTA
* * *
37754034 TAAGTTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTG
66 TAAGGTAAAATGAATATTTTGCCCTTATATGGTAAAATGACTG
* * *
37754077 TTTTGCTCTTATGGGGTAAAATGACTATTTTT-CATTATGGGGTAAAATGATTGTTTTGCCATTA
1 TTTTCCCCTTATGGGGTAAAATGACTATTTTTCCATTATGGGGTAAAATGACTGTTTTGCCATTA
** * *
37754141 TGGGGTAAAATGAATGTTTTGCCCTTATATGGTAAAATGATTG
66 TAAGGTAAAATGAATATTTTGCCCTTATATGGTAAAATGACTG
* * * * * ** * *
37754184 TTTTCCCCTAATGAGGTAAAATGACTGTTTTGCCCTTATAAGGTAAGATGACTGATTTGCC
1 TTTTCCCCTTATGGGGTAAAATGACTATTTTTCCATTATGGGGTAAAATGACTGTTTTGCC
37754245 TGTATGTGAT
Statistics
Matches: 138, Mismatches: 29, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
107 90 0.65
108 48 0.35
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (108 bp):
TTTTCCCCTTATGGGGTAAAATGACTATTTTTCCATTATGGGGTAAAATGACTGTTTTGCCATTA
TAAGGTAAAATGAATATTTTGCCCTTATATGGTAAAATGACTG
Found at i:37754168 original size:27 final size:27
Alignment explanation
Indices: 37753969--37754244 Score: 284
Period size: 27 Copynumber: 10.3 Consensus size: 27
37753959 GAAGTAATTA
* * * * *
37753969 TTTTTCCCTTACGGGGTTAAATGATTC
1 TTTTGCCCTTATGGGGTAAAATGACTG
* *
37753996 TTTTTCCCTTATGGGGTGAAATGACTG
1 TTTTGCCCTTATGGGGTAAAATGACTG
** * *
37754023 TTTTGCCCTTATAAGTTAAAATGACTA
1 TTTTGCCCTTATGGGGTAAAATGACTG
*
37754050 TTTTGCCCTTATGTGGTAAAATGACTG
1 TTTTGCCCTTATGGGGTAAAATGACTG
* *
37754077 TTTTGCTCTTATGGGGTAAAATGACTA
1 TTTTGCCCTTATGGGGTAAAATGACTG
* * *
37754104 TTTT-TCATTATGGGGTAAAATGATTG
1 TTTTGCCCTTATGGGGTAAAATGACTG
* *
37754130 TTTTGCCATTATGGGGTAAAATGAATG
1 TTTTGCCCTTATGGGGTAAAATGACTG
** *
37754157 TTTTGCCCTTATATGGTAAAATGATTG
1 TTTTGCCCTTATGGGGTAAAATGACTG
* * *
37754184 TTTTCCCCTAATGAGGTAAAATGACTG
1 TTTTGCCCTTATGGGGTAAAATGACTG
** *
37754211 TTTTGCCCTTATAAGGTAAGATGACTG
1 TTTTGCCCTTATGGGGTAAAATGACTG
*
37754238 ATTTGCC
1 TTTTGCC
37754245 TGTATGTGAT
Statistics
Matches: 210, Mismatches: 38, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
26 21 0.10
27 189 0.90
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.41
Consensus pattern (27 bp):
TTTTGCCCTTATGGGGTAAAATGACTG
Found at i:37754222 original size:134 final size:135
Alignment explanation
Indices: 37753967--37754241 Score: 363
Period size: 134 Copynumber: 2.0 Consensus size: 135
37753957 ATGAAGTAAT
* * * * * *
37753967 TATTTTTCCCTTACGGGGTTAAATGATTCTTTTTCCCTTATGGGGTGAAATGACTGTTTTGCCCT
1 TATTTTTCCATTACGGGGTAAAATGATTCTTTTGCCATTATGGGGTAAAATGAATGTTTTGCCCT
* * * * * **
37754032 TATAAGTTAAAATGACTATTTTGCCCTTATGTGGTAAAATGACTGTTTTGCTCTTATGGGGTAAA
66 TATAAGGTAAAATGACTATTTTCCCCTAATGAGGTAAAATGACTGTTTTGCCCTTATAAGGTAAA
37754097 ATGAC
131 ATGAC
* *
37754102 TATTTTT-CATTATGGGGTAAAATGATTGTTTTGCCATTATGGGGTAAAATGAATGTTTTGCCCT
1 TATTTTTCCATTACGGGGTAAAATGATTCTTTTGCCATTATGGGGTAAAATGAATGTTTTGCCCT
* * * *
37754166 TATATGGTAAAATGATTGTTTTCCCCTAATGAGGTAAAATGACTGTTTTGCCCTTATAAGGTAAG
66 TATAAGGTAAAATGACTATTTTCCCCTAATGAGGTAAAATGACTGTTTTGCCCTTATAAGGTAAA
37754231 ATGAC
131 ATGAC
37754236 TGATTT
1 T-ATTT
37754242 GCCTGTATGT
Statistics
Matches: 120, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
134 109 0.91
135 11 0.09
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (135 bp):
TATTTTTCCATTACGGGGTAAAATGATTCTTTTGCCATTATGGGGTAAAATGAATGTTTTGCCCT
TATAAGGTAAAATGACTATTTTCCCCTAATGAGGTAAAATGACTGTTTTGCCCTTATAAGGTAAA
ATGAC
Found at i:37754595 original size:18 final size:18
Alignment explanation
Indices: 37754569--37754618 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
37754559 ATGGGTAGAC
*
37754569 TTGTATACTGTTACTACA
1 TTGTTTACTGTTACTACA
*
37754587 TTGTTTACTATTACTACA
1 TTGTTTACTGTTACTACA
* *
37754605 ATGATTACTGTTAC
1 TTGTTTACTGTTAC
37754619 GGAACTGTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.46
Consensus pattern (18 bp):
TTGTTTACTGTTACTACA
Found at i:37754863 original size:16 final size:16
Alignment explanation
Indices: 37754842--37754872 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
37754832 CTTATATGGT
*
37754842 TGTTTATCTTTTTATC
1 TGTTTATCTATTTATC
37754858 TGTTTATCTATTTAT
1 TGTTTATCTATTTAT
37754873 ATGACTGTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.10, G:0.06, T:0.68
Consensus pattern (16 bp):
TGTTTATCTATTTATC
Found at i:37756850 original size:13 final size:13
Alignment explanation
Indices: 37756834--37756858 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37756824 TTGTATACTT
37756834 CTTCTCCTCTTTG
1 CTTCTCCTCTTTG
37756847 CTTCTCCTCTTT
1 CTTCTCCTCTTT
37756859 CGATTTTTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.04, T:0.56
Consensus pattern (13 bp):
CTTCTCCTCTTTG
Found at i:37757746 original size:27 final size:27
Alignment explanation
Indices: 37757716--37758033 Score: 363
Period size: 27 Copynumber: 11.8 Consensus size: 27
37757706 TAATTTAATG
37757716 AAATGACTGTTTTGCCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* ** *
37757743 AAATGACTGTGTTT-CCCTTGTAAGGTG
1 AAATGACTGT-TTTGCCCTTATGGGGTA
* *
37757770 AAATGATTGTTTTGTCCTTAT-GGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* *
37757796 AAATGACTGTTTTGCCCTTATGGGTTG
1 AAATGACTGTTTTGCCCTTATGGGGTA
* **
37757823 AAATGATTGTTTTGCCCTTATAAGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* *
37757850 AAATGATTGTTTTTCCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
37757877 AAATGACTGTTTTGCCCTTATGGGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* *
37757904 AAATGATTGTTTTGCCCTTAT-AGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* * *
37757930 AAATGATTATTTTGCCCTTATGTGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* * *
37757957 AAATGACTATTTTTTCCCTTATGAGGTA
1 AAATGACT-GTTTTGCCCTTATGGGGTA
**
37757985 AAATGACTGTTTTGCCCTTATATGGTA
1 AAATGACTGTTTTGCCCTTATGGGGTA
* * *
37758012 AGATGACTGATATGCCCTTATG
1 AAATGACTGTTTTGCCCTTATG
37758034 TGATGTATGT
Statistics
Matches: 247, Mismatches: 39, Indels: 10
0.83 0.13 0.03
Matches are distributed among these distances:
26 49 0.20
27 171 0.69
28 27 0.11
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.41
Consensus pattern (27 bp):
AAATGACTGTTTTGCCCTTATGGGGTA
Found at i:37757812 original size:80 final size:80
Alignment explanation
Indices: 37757716--37758017 Score: 421
Period size: 80 Copynumber: 3.8 Consensus size: 80
37757706 TAATTTAATG
* *
37757716 AAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGTGTTT-CCCTTGTAAGGTGAAATGATTGT
1 AAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGT-TTTGCCCTTATAAGGTAAAATGATTGT
37757780 TTTGTCCTTATGGGTA
65 TTTGTCCTTATGGGTA
* * *
37757796 AAATGACTGTTTTGCCCTTATGGGTTGAAATGATTGTTTTGCCCTTATAAGGTAAAATGATTGTT
1 AAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTGCCCTTATAAGGTAAAATGATTGTT
37757861 TT-TCCCTTATGGGGTA
66 TTGT-CCTTAT-GGGTA
* *
37757877 AAATGACTGTTTTGCCCTTATGGGGTAAAATGATTGTTTTGCCCTTAT-AGGTAAAATGATTATT
1 AAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTGCCCTTATAAGGTAAAATGATTGTT
*
37757941 TTGCCCTTATGTGGTA
66 TTGTCCTTATG-GGTA
* * * * *
37757957 AAATGACTATTTTTTCCCTTATGAGGTAAAATGACTGTTTTGCCCTTATATGGTAAGATGA
1 AAATGACT-GTTTTGCCCTTATGGGGTAAAATGACTGTTTTGCCCTTATAAGGTAAAATGA
37758018 CTGATATGCC
Statistics
Matches: 200, Mismatches: 15, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
79 5 0.03
80 99 0.50
81 87 0.44
82 9 0.05
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.41
Consensus pattern (80 bp):
AAATGACTGTTTTGCCCTTATGGGGTAAAATGACTGTTTTGCCCTTATAAGGTAAAATGATTGTT
TTGTCCTTATGGGTA
Found at i:37761661 original size:27 final size:27
Alignment explanation
Indices: 37761456--37761653 Score: 272
Period size: 27 Copynumber: 7.3 Consensus size: 27
37761446 CAATTCGATG
* *
37761456 AAATCACTATTTT-CCCTTTATAGGGTA
1 AAATGACTATTTTGCCC-TTATATGGTA
*
37761483 AAATGACTATTTTGCCCTTATAAGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* *
37761510 AAATGACTGTTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* * *
37761537 AAATGACTGTTTTGCCTTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
*
37761564 AAATGACTATTTTGCCCTTATGTGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
37761591 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
* *
37761618 AAATGATTGTTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
*
37761645 AGATGACTA
1 AAATGACTA
37761654 ATATGCCCCT
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
27 153 0.98
28 3 0.02
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATATGGTA
Found at i:37762035 original size:18 final size:18
Alignment explanation
Indices: 37761991--37762057 Score: 55
Period size: 18 Copynumber: 3.7 Consensus size: 18
37761981 AGGACTTGTA
*
37761991 TACTGTTACTACATTGAT
1 TACTGTTACTACACTGAT
* *
37762009 TACTATTACTGCACTGAT
1 TACTGTTACTACACTGAT
* * *
37762027 TATTGTTACGATACT-ATT
1 TACTGTTACTACACTGA-T
*
37762045 TATTGTTACTACA
1 TACTGTTACTACA
37762058 ATGGGCCAAG
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
17 1 0.03
18 37 0.97
ACGTcount: A:0.28, C:0.16, G:0.10, T:0.45
Consensus pattern (18 bp):
TACTGTTACTACACTGAT
Found at i:37764939 original size:23 final size:23
Alignment explanation
Indices: 37764899--37764953 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
37764889 AGCTCGTAAA
* *
37764899 AGCTTATTG-TTCAACTCATTAG
1 AGCTTACTGTTTCAACTCAATAG
* *
37764921 AGTTTACTGTTTCAGCTCAATAG
1 AGCTTACTGTTTCAACTCAATAG
*
37764944 TGCTTACTGT
1 AGCTTACTGT
37764954 CCATCAGCTC
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
22 7 0.27
23 19 0.73
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (23 bp):
AGCTTACTGTTTCAACTCAATAG
Found at i:37771512 original size:43 final size:44
Alignment explanation
Indices: 37771373--37771591 Score: 311
Period size: 45 Copynumber: 5.0 Consensus size: 44
37771363 ATATCGCACA
* *
37771373 ATACTATTCGGGCCTCTGAGCATAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGGCTTC-GAGCCTAGCAGGCTATAATGCCGGTGAG
*
37771418 ATACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCGGG-CTTCGAGCCTAGCAGGCTATAATGCCGGTGAG
*
37771463 ATACTATTCGGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTGAG
1 ATACTATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
37771506 ATACTATTCGGGCTTTCGAGCCTAGCAGGCTATAATGCTGGTGAA
1 ATACTATTCGGGC-TTCGAGCCTAGCAGGCTATAATGCCGGTGAG
*
37771551 ATGA-TA-TCGGGCTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 AT-ACTATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
37771592 ATGAATTTGG
Statistics
Matches: 160, Mismatches: 10, Indels: 11
0.88 0.06 0.06
Matches are distributed among these distances:
42 10 0.06
43 42 0.26
44 40 0.25
45 65 0.41
46 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (44 bp):
ATACTATTCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:37771527 original size:88 final size:88
Alignment explanation
Indices: 37771372--37771591 Score: 338
Period size: 88 Copynumber: 2.5 Consensus size: 88
37771362 AATATCGCAC
* * *
37771372 AATACTATTCGGGCCTCTGAGCATAGCAGGCTATAATGCCGGTGAGATACTATTCGGGCCTTTGA
1 AATACTATTCGGGCTTC-GAGCCTAGCAGGCGA-AATGCCGGTGAGATACTATTCGGGCCTTTGA
37771437 GCCTAGCAGGCTATAATGCCGGTGA
64 GCCTAGCAGGCTATAATGCCGGTGA
*
37771462 GATACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGAGATACTATTCGGG-CTTTCGAG
1 AATACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGAGATACTATTCGGGCCTTT-GAG
*
37771526 CCTAGCAGGCTATAATGCTGGTGA
65 CCTAGCAGGCTATAATGCCGGTGA
37771550 AATGA-TA-TCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
1 AAT-ACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGA
37771592 ATGAATTTGG
Statistics
Matches: 122, Mismatches: 6, Indels: 7
0.90 0.04 0.05
Matches are distributed among these distances:
87 39 0.32
88 54 0.44
89 14 0.11
90 15 0.12
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (88 bp):
AATACTATTCGGGCTTCGAGCCTAGCAGGCGAAATGCCGGTGAGATACTATTCGGGCCTTTGAGC
CTAGCAGGCTATAATGCCGGTGA
Found at i:37774183 original size:93 final size:92
Alignment explanation
Indices: 37774025--37774194 Score: 270
Period size: 93 Copynumber: 1.8 Consensus size: 92
37774015 GGATGGTTGA
* * * * *
37774025 GCATCCGAACTCGTTGAGTTGATCCGAGTTCACTTATGGATGCGAATGTCCGAACTTGTTGAGTT
1 GCATCCGAACTCGTTGAGCTGATCCGAGTTCACTTATGGATACGAACGTCCCAACTCGTTGAGTT
37774090 GAGTCCGAGTTCGTGAAATGTAACTAG
66 GAGTCCGAGTTCGTGAAATGTAACTAG
37774117 GCATCCGAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATACGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGCTGA-TCCGAGTTCACTTATGGATACGAACGTCCCAA-CTCGTTGAG
37774181 TTGAGTCCGAGTTC
64 TTGAGTCCGAGTTC
37774195 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
92 25 0.35
93 46 0.65
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (92 bp):
GCATCCGAACTCGTTGAGCTGATCCGAGTTCACTTATGGATACGAACGTCCCAACTCGTTGAGTT
GAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:37774186 original size:46 final size:45
Alignment explanation
Indices: 37774032--37774202 Score: 161
Period size: 46 Copynumber: 3.7 Consensus size: 45
37774022 TGAGCATCCG
* * *
37774032 AACTCGTTGAGTTGA-TCCGAGTTCACTTATGGATGCGAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACG-CCC
* * * * * *
37774077 AACTTGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-AC-TAGGCATCC
1 AACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATACGAACGC--CC
*
37774123 GAACTCGTTGAGCTGAGTCCGAGTTCACTTATGGATACGAACGCCC
1 -AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCC
37774169 AAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
37774203 GCGGGTTACA
Statistics
Matches: 100, Mismatches: 16, Indels: 19
0.74 0.12 0.14
Matches are distributed among these distances:
44 1 0.01
45 19 0.19
46 47 0.47
47 29 0.29
48 4 0.04
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATACGAACGCCC
Done.