Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 132 of 186
Found at i:43527644 original size:39 final size:39
Alignment explanation
Indices: 43527579--43527834 Score: 327
Period size: 39 Copynumber: 6.6 Consensus size: 39
43527569 TTCCAACCCA
* * *
43527579 AATGCCTTCGGAACTTAGCCCAGATATAACATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
43527618 AATGCCTTCGGGACTTTGCCCGGATATAATATCAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* *
43527657 AATGCCTTCGAGACTTAGCCCGGATATAATACCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* * * *
43527696 AATGCCTTCGGGACTTAACCCAGATACAATATCAGCACA
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
* * *
43527735 AATGCATTCGGGACTTATCCTGGATATAATATCAGCACG
1 AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
*
43527774 AATGCCTTCGGGACTTAGCCCGGATATAAATCTCA-CAC-
1 AATGCCTTCGGGACTTAGCCCGGATAT-AATATCAGCACG
* * *
43527812 AAAGCCTGCGGGTCTTAGCCCGG
1 AATGCCTTCGGGACTTAGCCCGG
43527835 TTAAAATCCT
Statistics
Matches: 188, Mismatches: 28, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
38 20 0.11
39 162 0.86
40 6 0.03
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATATCAGCACG
Found at i:43534221 original size:6 final size:6
Alignment explanation
Indices: 43534212--43534259 Score: 62
Period size: 6 Copynumber: 7.8 Consensus size: 6
43534202 AATGAAAATG
*
43534212 AGAATC AGAATC AGAATC AG-GTGAC AGAATC AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGAAT
43534260 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
5 1 0.03
6 32 0.86
7 3 0.08
8 1 0.03
ACGTcount: A:0.48, C:0.15, G:0.21, T:0.17
Consensus pattern (6 bp):
AGAATC
Found at i:43534456 original size:26 final size:26
Alignment explanation
Indices: 43534377--43534449 Score: 101
Period size: 27 Copynumber: 2.8 Consensus size: 26
43534367 AACATGGCTG
* *
43534377 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
43534403 CCAGATACAAATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
43534430 CCAGAACAGATAATGTGGCA
1 CCAGAACAGATATTGTGGCA
43534450 AAACCACTTA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
26 18 0.44
27 23 0.56
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:43535684 original size:27 final size:27
Alignment explanation
Indices: 43535192--43535676 Score: 547
Period size: 27 Copynumber: 18.0 Consensus size: 27
43535182 GGGACAAAAT
* * * * *
43535192 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
43535219 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * ** *
43535246 AGTATTTCTACTTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
43535273 GATAATTCTACGCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
43535300 AGTAATTCTACCCTACAGGAGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
43535327 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
43535354 GGTATTTCTACTCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
43535381 GATAATTCTACCTTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
*
43535408 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * * *
43535435 GGTATTTCTACCATACAAGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
** *
43535462 AATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
43535489 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
43535516 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
43535543 GGTATTTTTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** ** *
43535570 AATAATTCTACTGTACAGCGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
43535597 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* ** *
43535624 GGTATTTCTACCCTACAAAGGTATTTA
1 GGTAATTCTACCCTACAGGGGTATTTC
43535651 GGTAATTCTACCCTACAGGGGTATTT
1 GGTAATTCTACCCTACAGGGGTATTT
43535677 TAATAATTTA
Statistics
Matches: 385, Mismatches: 73, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 385 1.00
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.37
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:43535753 original size:27 final size:27
Alignment explanation
Indices: 43535722--43535927 Score: 225
Period size: 27 Copynumber: 7.6 Consensus size: 27
43535712 TATAAATTGG
* * *
43535722 GGGTACTTTGGTAATTTTACAAGTCGAA
1 GGGTATTTTGGTAATTTTACAA-ACCAA
*** * *
43535750 -GGTATTTCAATAATTTTACAAATCGA
1 GGGTATTTTGGTAATTTTACAAACCAA
** * * *
43535776 GGGTATTTTAATAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
43535803 GGGTATTTTGGTAATTTTACAAACTAA
1 GGGTATTTTGGTAATTTTACAAACCAA
43535830 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
43535857 GGGTATTTTGGTAATTTTACAAACCAA
1 GGGTATTTTGGTAATTTTACAAACCAA
* ** *
43535884 GGGTATTTTGGTATTTTTACAAATTAG
1 GGGTATTTTGGTAATTTTACAAACCAA
*
43535911 GGGTATTTTGGTGATTT
1 GGGTATTTTGGTAATTT
43535928 GGTAAACTAA
Statistics
Matches: 152, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 151 0.99
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAA
Found at i:43535983 original size:27 final size:27
Alignment explanation
Indices: 43535952--43536256 Score: 380
Period size: 27 Copynumber: 11.3 Consensus size: 27
43535942 TTCTAAATAG
43535952 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCGGTATTTCTACCCTACAA
43535979 GGGTATTTCGGTATTTCTACCCTACAA
1 GGGTATTTCGGTATTTCTACCCTACAA
*
43536006 GGGTATTTCGGTATTTTTACCCTACAA
1 GGGTATTTCGGTATTTCTACCCTACAA
** ** *
43536033 CAGTATTTTAGTAATTCTACCCTACAA
1 GGGTATTTCGGTATTTCTACCCTACAA
* * *
43536060 GGGTATTTCGGTAATTCTATCCTA-TA
1 GGGTATTTCGGTATTTCTACCCTACAA
43536086 GTGGTATTTCGGTATTTCTACCCTACAA
1 G-GGTATTTCGGTATTTCTACCCTACAA
**
43536114 GGGTATTTATGTATTTCTACCCTACAA
1 GGGTATTTCGGTATTTCTACCCTACAA
* *
43536141 GGGTATTTCGATATTTCTACCTTACAA
1 GGGTATTTCGGTATTTCTACCCTACAA
** * *
43536168 GGGTATTTCAATAATTCTACCCTACAG
1 GGGTATTTCGGTATTTCTACCCTACAA
** * *
43536195 GGGTATTTCAATAATTCTATCCTACAA
1 GGGTATTTCGGTATTTCTACCCTACAA
*
43536222 GGGTATTTCGGTAATTCTACCCTAC-A
1 GGGTATTTCGGTATTTCTACCCTACAA
43536248 GGTGTATTT
1 GG-GTATTT
43536257 TAATAATTTT
Statistics
Matches: 244, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
26 5 0.02
27 237 0.97
28 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTATTTCTACCCTACAA
Found at i:43536488 original size:53 final size:53
Alignment explanation
Indices: 43536357--43536534 Score: 230
Period size: 54 Copynumber: 3.3 Consensus size: 53
43536347 TACAAGTCGA
** * * * *
43536357 GGGTATTTCAGTAATTTTGCAAACTAAAGGTATTTCGGTAATTTCATAAATCAG
1 GGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTT-ATAAACCAG
*
43536411 GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTTGGTAATTTATAAACCAG
1 GGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTTATAAACCAG
* * *
43536464 GGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGATAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAA-TTTATAAACCAG
* *
43536518 GTGTATTTTGGTGATTT
1 GGGTATTTTGGTAATTT
43536535 GGTAAACTAA
Statistics
Matches: 110, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
53 46 0.42
54 64 0.58
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTGCAAACCAAGGGTATTTTGGTAATTTATAAACCAG
Found at i:43536494 original size:27 final size:27
Alignment explanation
Indices: 43536309--43536534 Score: 195
Period size: 27 Copynumber: 8.4 Consensus size: 27
43536299 TCGAGGGTGC
* ** *
43536309 TTTGGTAATTTTACAAGTCGAGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTAT
** * ** *
43536336 TTCAGTAATTTTACAAGTCGAGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTAT
** ** * *
43536363 TTCAGTAATTTTGCAAACTAAAGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTAT
* * * *
43536390 TTCGGTAATTTCATAAATCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTAT
*
43536417 TTTGGTAATTTTACAAACCAAGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTAT
*
43536444 TTTGGTAA-TTTATAAACCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTAT
*
43536470 TTTGGTAATTTTGTAAACCAAGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTAT
* *
43536497 TTTGATAATTTTACAAACC-AGGTGTAT
1 TTTGGTAATTTTATAAACCAAGG-GTAT
*
43536524 TTTGGTGATTT
1 TTTGGTAATTT
43536535 GGTAAACTAA
Statistics
Matches: 167, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 27 0.16
27 140 0.84
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (27 bp):
TTTGGTAATTTTATAAACCAAGGGTAT
Found at i:43536506 original size:80 final size:80
Alignment explanation
Indices: 43536385--43536534 Score: 221
Period size: 80 Copynumber: 1.9 Consensus size: 80
43536375 GCAAACTAAA
* * *
43536385 GGTATTTCGGTAATTTCATAAATCAGGGGTATTTTGGTAATTTTACAAACCAAGG-GTATTTTGG
1 GGTATTTCGGTAATTTCATAAACCAAGGGTATTTTGATAATTTTACAAACC-AGGTGTATTTTGG
43536449 TAATTTATAAACCAGG
65 TAATTTATAAACCAGG
* **
43536465 GGTATTTTGGTAATTTTGTAAACCAAGGGTATTTTGATAATTTTACAAACCAGGTGTATTTTGGT
1 GGTATTTCGGTAATTTCATAAACCAAGGGTATTTTGATAATTTTACAAACCAGGTGTATTTTGGT
*
43536530 GATTT
66 AATTT
43536535 GGTAAACTAA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
79 3 0.05
80 59 0.95
ACGTcount: A:0.29, C:0.09, G:0.21, T:0.41
Consensus pattern (80 bp):
GGTATTTCGGTAATTTCATAAACCAAGGGTATTTTGATAATTTTACAAACCAGGTGTATTTTGGT
AATTTATAAACCAGG
Found at i:43536550 original size:80 final size:79
Alignment explanation
Indices: 43536341--43536550 Score: 208
Period size: 80 Copynumber: 2.6 Consensus size: 79
43536331 GGTATTTCAG
** * **
43536341 TAATTTTACAAGTCGAGGGTATTTCAGTAATTT-TGCAAACTAAAGGTATTTCGGTAATTTCATA
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTTAT--AAACTAAA-GTATTTCGGTAATTTCATA
* * *
43536405 AATCAGGGGTATTTTGG
63 AACCAAGGGTATTTTGA
* ** * **
43536422 TAATTTTACAAACCAAGGGTATTTTGGTAATTTATAAACCAGGGGTATTTTGGTAATTTTGTAAA
1 TAATTTTACAAACCAAGGGTATTTTGGTAATTTATAAACTA-AAGTATTTCGGTAATTTCATAAA
43536487 CCAAGGGTATTTTGA
65 CCAAGGGTATTTTGA
* *
43536502 TAATTTTACAAACC-AGGTGTATTTTGGTGATTTGGTAAACTAAAGTATT
1 TAATTTTACAAACCAAGG-GTATTTTGGTAATTT-ATAAACTAAAGTATT
43536551 CTAAACAGGG
Statistics
Matches: 106, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
79 3 0.03
80 68 0.64
81 34 0.32
82 1 0.01
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (79 bp):
TAATTTTACAAACCAAGGGTATTTTGGTAATTTATAAACTAAAGTATTTCGGTAATTTCATAAAC
CAAGGGTATTTTGA
Found at i:43538548 original size:6 final size:6
Alignment explanation
Indices: 43538529--43538595 Score: 64
Period size: 6 Copynumber: 10.8 Consensus size: 6
43538519 AATGAAAATG
* * * *
43538529 AGAATC AAAATC AGAATC AG-GTGAC AGAATC AGAATC AGTATC AGATAAC
1 AGAATC AGAATC AGAATC AGAAT--C AGAATC AGAATC AGAATC AGA-ATC
43538579 AGAATC AGAATC AGAAT
1 AGAATC AGAATC AGAAT
43538596 GTGAATGCAA
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
5 1 0.02
6 39 0.80
7 8 0.16
8 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (6 bp):
AGAATC
Found at i:43538559 original size:25 final size:25
Alignment explanation
Indices: 43538529--43538595 Score: 98
Period size: 25 Copynumber: 2.7 Consensus size: 25
43538519 AATGAAAATG
* * *
43538529 AGAATCAAAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGATAAC
*
43538554 AGAATCAGAATCAGTATCAGATAAC
1 AGAATCAGAATCAGAATCAGATAAC
43538579 AGAATCAGAATCAGAAT
1 AGAATCAGAATCAGAAT
43538596 GTGAATGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 37 1.00
ACGTcount: A:0.49, C:0.15, G:0.18, T:0.18
Consensus pattern (25 bp):
AGAATCAGAATCAGAATCAGATAAC
Found at i:43540539 original size:68 final size:66
Alignment explanation
Indices: 43540467--43540638 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
43540457 CATCATGTGT
* * * *
43540467 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCA
43540530 TGTAG
62 TGTAG
** * *
43540535 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCA-GTGAAGGACACCATGT
43540600 AG
65 AG
* * * *
43540602 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
43540639 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.17, G:0.29, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGATACCAGTGAAGGACACCATGTA
G
Found at i:43540572 original size:64 final size:64
Alignment explanation
Indices: 43540491--43540674 Score: 203
Period size: 67 Copynumber: 2.8 Consensus size: 64
43540481 AGACATTATG
* * *
43540491 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
43540555 ATGTAGCTAGGTCGCATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
43540620 AA
63 AA
* * *
43540622 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGC
43540675 CAAACTATAT
Statistics
Matches: 99, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.17, G:0.31, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:43546553 original size:32 final size:32
Alignment explanation
Indices: 43546501--43546565 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
43546491 CCTTTACATA
43546501 TTTCATATTGCATAACACTGGGCCGAAGCCTT
1 TTTCATATTGCATAACACTGGGCCGAAGCCTT
* **
43546533 TTTCATATTTCATATTACTGGGCCGAAGCCTT
1 TTTCATATTGCATAACACTGGGCCGAAGCCTT
43546565 T
1 T
43546566 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (32 bp):
TTTCATATTGCATAACACTGGGCCGAAGCCTT
Found at i:43546802 original size:25 final size:24
Alignment explanation
Indices: 43546760--43546807 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
43546750 GCTTTATCAT
*
43546760 ATAACTGGAGGCCTAGCCTCTTTTA
1 ATAACTGGAGGCATAGCC-CTTTTA
43546785 ATAACTGG-GGCATAAGCCCTTTT
1 ATAACTGGAGGCAT-AGCCCTTTT
43546808 GCACTTCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 9 0.43
25 12 0.57
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (24 bp):
ATAACTGGAGGCATAGCCCTTTTA
Found at i:43546888 original size:11 final size:11
Alignment explanation
Indices: 43546857--43546932 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 11
43546847 TTATGAATAC
43546857 ATCATGTGCAT
1 ATCATGTGCAT
*
43546868 ATCA--TACAT
1 ATCATGTGCAT
43546877 ATCATGTGCAT
1 ATCATGTGCAT
*
43546888 ATC--GTACAT
1 ATCATGTGCAT
43546897 ATCATGTGCAT
1 ATCATGTGCAT
*
43546908 ATCATAT--AT
1 ATCATGTGCAT
43546917 ATCATGTGCAT
1 ATCATGTGCAT
43546928 ATCAT
1 ATCAT
43546933 ATCAATATTG
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 24 0.45
11 29 0.55
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
ATCATGTGCAT
Found at i:43546934 original size:20 final size:20
Alignment explanation
Indices: 43546857--43546933 Score: 136
Period size: 20 Copynumber: 3.9 Consensus size: 20
43546847 TTATGAATAC
43546857 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
43546877 ATCATGTGCATATCGTACAT
1 ATCATGTGCATATCATACAT
*
43546897 ATCATGTGCATATCATATAT
1 ATCATGTGCATATCATACAT
43546917 ATCATGTGCATATCATA
1 ATCATGTGCATATCATA
43546934 TCAATATTGT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:43550960 original size:17 final size:17
Alignment explanation
Indices: 43550938--43550971 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
43550928 ACAAGACACT
43550938 TATATGCCAACACTGGC
1 TATATGCCAACACTGGC
*
43550955 TATATGCCAACATTGGC
1 TATATGCCAACACTGGC
43550972 CAAATTAACC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (17 bp):
TATATGCCAACACTGGC
Found at i:43552405 original size:12 final size:13
Alignment explanation
Indices: 43552388--43552416 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
43552378 CATGACTAGG
43552388 TTTTC-TTTTCTT
1 TTTTCTTTTTCTT
43552400 TTTTCTTTTTCTT
1 TTTTCTTTTTCTT
43552413 TTTT
1 TTTT
43552417 GGTGGAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (13 bp):
TTTTCTTTTTCTT
Found at i:43554909 original size:28 final size:29
Alignment explanation
Indices: 43554864--43554983 Score: 122
Period size: 28 Copynumber: 4.2 Consensus size: 29
43554854 AGCATGACTG
*
43554864 TAAATGTGATTTGGGCCTAAT-GGCCATA
1 TAAAGGTGATTTGGGCCTAATGGGCCATA
* *
43554892 TGAAGGTGATTTGGGCCTAATGGGCCACA
1 TAAAGGTGATTTGGGCCTAATGGGCCATA
* *
43554921 TAAATGTGA-TTGGGCTTAATGGGCCATA
1 TAAAGGTGATTTGGGCCTAATGGGCCATA
* **
43554949 TTAAA-GAGA-TTGGGCCTGGTGGGCCATA
1 -TAAAGGTGATTTGGGCCTAATGGGCCATA
*
43554977 TATAGGT
1 TAAAGGT
43554984 ATGTGGATTT
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
27 3 0.04
28 56 0.74
29 17 0.22
ACGTcount: A:0.27, C:0.13, G:0.31, T:0.29
Consensus pattern (29 bp):
TAAAGGTGATTTGGGCCTAATGGGCCATA
Found at i:43554962 original size:56 final size:57
Alignment explanation
Indices: 43554864--43554974 Score: 145
Period size: 56 Copynumber: 2.0 Consensus size: 57
43554854 AGCATGACTG
* *
43554864 TAAATGTGATTTGGGCCTAATGGCCATATGAAGGTGATTTGGGCCTAATGGGCCACA
1 TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
* * **
43554921 TAAATGTGA-TTGGGCTTAATGGGCCATATTAAAGAGA-TTGGGCCTGGTGGGCCA
1 TAAATGTGATTTGGGCCTAAT-GGCCATATGAAAGAGATTTGGGCCTAATGGGCCA
43554975 TATATAGGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
56 25 0.53
57 22 0.47
ACGTcount: A:0.26, C:0.14, G:0.32, T:0.28
Consensus pattern (57 bp):
TAAATGTGATTTGGGCCTAATGGCCATATGAAAGAGATTTGGGCCTAATGGGCCACA
Found at i:43566834 original size:16 final size:16
Alignment explanation
Indices: 43566815--43566851 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
43566805 TTTCATTATG
43566815 TTTTTAAGACTCATTT
1 TTTTTAAGACTCATTT
*
43566831 TTTTTAAGATTCATTT
1 TTTTTAAGACTCATTT
43566847 TTTTT
1 TTTTT
43566852 CCTTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.22, C:0.08, G:0.05, T:0.65
Consensus pattern (16 bp):
TTTTTAAGACTCATTT
Found at i:43570299 original size:40 final size:40
Alignment explanation
Indices: 43570016--43570299 Score: 328
Period size: 40 Copynumber: 7.1 Consensus size: 40
43570006 CGGAATTTAA
** *
43570016 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
43570056 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
43570096 CCGGATTTAGTAACTCGCACCAATGCCTTTGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
43570135 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGACCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* *
43570175 CCGGATATATTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
43570215 CCGGATTTAATAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
43570255 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
43570295 CCGGA
1 CCGGA
43570300 CATCATTCGA
Statistics
Matches: 208, Mismatches: 27, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.01
39 35 0.17
40 156 0.75
41 15 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:43573358 original size:16 final size:16
Alignment explanation
Indices: 43573333--43573364 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
43573323 GCAAAATCTC
43573333 GAAATACCGAAAAGCT
1 GAAATACCGAAAAGCT
*
43573349 GAAATGCCGAAAAGCT
1 GAAATACCGAAAAGCT
43573365 AGAAGTTTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.47, C:0.19, G:0.22, T:0.12
Consensus pattern (16 bp):
GAAATACCGAAAAGCT
Found at i:43573652 original size:29 final size:28
Alignment explanation
Indices: 43573571--43573686 Score: 126
Period size: 28 Copynumber: 4.1 Consensus size: 28
43573561 ATTGCATGAC
* * *
43573571 TATGAATGTGATTGGGGCCGATGGACAA
1 TATGAATGTGATTGGGGCCAATGGGCCA
* *
43573599 TATGAATATGATTGGGGCCGATGGGCCA
1 TATGAATGTGATTGGGGCCAATGGGCCA
*
43573627 TATGAATGTGATTTGGGCCTAATGGGCCA
1 TATGAATGTGATTGGGGCC-AATGGGCCA
* * *
43573656 TATGAATGAGACT-GGGCCTAGTGGGCCA
1 TATGAATGTGATTGGGGCC-AATGGGCCA
43573684 TAT
1 TAT
43573687 ACATGTATGT
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
28 59 0.76
29 19 0.24
ACGTcount: A:0.26, C:0.14, G:0.34, T:0.27
Consensus pattern (28 bp):
TATGAATGTGATTGGGGCCAATGGGCCA
Found at i:43573681 original size:57 final size:56
Alignment explanation
Indices: 43573571--43573686 Score: 137
Period size: 57 Copynumber: 2.1 Consensus size: 56
43573561 ATTGCATGAC
* *
43573571 TATGAATGTGATTGGGGCCGATGGACAATATGAATATGATTGGGGCCGATGGGCCA
1 TATGAATGTGATTGGGGCCAATGGACAATATGAATATGACTGGGGCCGATGGGCCA
* * * *
43573627 TATGAATGTGATTTGGGCCTAATGGGCCATATGAATGA-GACT-GGGCCTAGTGGGCCA
1 TATGAATGTGATTGGGGCC-AATGGACAATATGAAT-ATGACTGGGGCCGA-TGGGCCA
43573684 TAT
1 TAT
43573687 ACATGTATGT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
56 24 0.47
57 26 0.51
58 1 0.02
ACGTcount: A:0.26, C:0.14, G:0.34, T:0.27
Consensus pattern (56 bp):
TATGAATGTGATTGGGGCCAATGGACAATATGAATATGACTGGGGCCGATGGGCCA
Found at i:43575923 original size:28 final size:28
Alignment explanation
Indices: 43575890--43575945 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
43575880 AAGTTAGGGT
43575890 TCATATTTGGAAAAATACCCATAGGTGA
1 TCATATTTGGAAAAATACCCATAGGTGA
43575918 TCATATTTGGAAAAATACCCATAGGTGA
1 TCATATTTGGAAAAATACCCATAGGTGA
43575946 AAAGTGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.29
Consensus pattern (28 bp):
TCATATTTGGAAAAATACCCATAGGTGA
Found at i:43578828 original size:68 final size:67
Alignment explanation
Indices: 43578756--43578905 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
43578746 CATCATGTGT
* * * *
43578756 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
43578818 ATGTAG
62 ATGTAG
* * * *
43578824 ACAAGAGAGCTACGAGATATATTTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
43578889 AG
66 AG
43578891 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
43578906 GATAAACTGG
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
64 19 0.27
65 7 0.10
66 5 0.07
67 27 0.38
68 13 0.18
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.22
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:43584457 original size:28 final size:28
Alignment explanation
Indices: 43584409--43584528 Score: 116
Period size: 28 Copynumber: 4.2 Consensus size: 28
43584399 TGCATGAATG
* *
43584409 TGAATGTGATTGGGGCTGATGGGCCATA
1 TGAATGTGATTAGGGCCGATGGGCCATA
* * *
43584437 TGAATGTGATTAAGGCCGATGTGCTATA
1 TGAATGTGATTAGGGCCGATGGGCCATA
* *
43584465 TGAATGTGATTTGGGCCTAATGGGCCATA
1 TGAATGTGATTAGGGCC-GATGGGCCATA
* * *
43584494 TGAATGAGATT-GGGCCTAGTGAGCCATA
1 TGAATGTGATTAGGGCCGA-TGGGCCATA
*
43584522 TGCATGT
1 TGAATGT
43584529 TTGTAGACTT
Statistics
Matches: 75, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
27 1 0.01
28 56 0.75
29 18 0.24
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (28 bp):
TGAATGTGATTAGGGCCGATGGGCCATA
Found at i:43584523 original size:57 final size:56
Alignment explanation
Indices: 43584409--43584528 Score: 143
Period size: 57 Copynumber: 2.1 Consensus size: 56
43584399 TGCATGAATG
* * * * *
43584409 TGAATGTGATTGGGGCTGATGGGCCATATGAATGTGATTAAGGCCGATGTGCTATA
1 TGAATGTGATTGGGCCTAATGGGCCATATGAATGAGATTAAGGCCGATGAGCCATA
* *
43584465 TGAATGTGATTTGGGCCTAATGGGCCATATGAATGAGATT-GGGCCTAGTGAGCCATA
1 TGAATGTGA-TTGGGCCTAATGGGCCATATGAATGAGATTAAGGCCGA-TGAGCCATA
*
43584522 TGCATGT
1 TGAATGT
43584529 TTGTAGACTT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
56 14 0.26
57 40 0.74
ACGTcount: A:0.25, C:0.12, G:0.33, T:0.30
Consensus pattern (56 bp):
TGAATGTGATTGGGCCTAATGGGCCATATGAATGAGATTAAGGCCGATGAGCCATA
Found at i:43588932 original size:27 final size:27
Alignment explanation
Indices: 43588906--43589089 Score: 208
Period size: 27 Copynumber: 6.9 Consensus size: 27
43588896 ACCCCCTATG
* * *
43588906 TGGTAAAATAACTGTTTTGCCCATATG
1 TGGTAAAATGACTGTTTTGCCCTTATA
* *
43588933 TGGTAAAATGACTGTTTTTCCTTTATA
1 TGGTAAAATGACTGTTTTGCCCTTATA
* **
43588960 TGGTAAAATGACTGTTTCGCTTTTATA
1 TGGTAAAATGACTGTTTTGCCCTTATA
* *
43588987 TGGTAAAATGACTATTTTTCCCTTATA
1 TGGTAAAATGACTGTTTTGCCCTTATA
* * *
43589014 TGGTAAAATGATTGTTTTTCCC-TATG
1 TGGTAAAATGACTGTTTTGCCCTTATA
* *
43589040 TGGTAAAATGACTATTTTGCTCTTATA
1 TGGTAAAATGACTGTTTTGCCCTTATA
* *
43589067 TGGTAAGATGACTGCTTTGCCCT
1 TGGTAAAATGACTGTTTTGCCCT
43589090 ATTTGATGTA
Statistics
Matches: 131, Mismatches: 25, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
26 21 0.16
27 110 0.84
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (27 bp):
TGGTAAAATGACTGTTTTGCCCTTATA
Found at i:43589078 original size:80 final size:81
Alignment explanation
Indices: 43588906--43589088 Score: 233
Period size: 80 Copynumber: 2.3 Consensus size: 81
43588896 ACCCCCTATG
* * * *
43588906 TGGTAAAATAACTGTTTTGCCCATATGTGGTAAAATGACTGTTTTTCCTTTATATGGTAAAATGA
1 TGGTAAAATGACTATTTTGCCCATATATGGTAAAATGACTGTTTTTCCTCTATATGGTAAAATGA
* *
43588971 CTGTTTCGCTTTTATA
66 CTATTTCGCTCTTATA
* * * *
43588987 TGGTAAAATGACTATTTTTCCCTTATATGGTAAAATGATTGTTTTTCC-CTATGTGGTAAAATGA
1 TGGTAAAATGACTATTTTGCCCATATATGGTAAAATGACTGTTTTTCCTCTATATGGTAAAATGA
*
43589051 CTATTTTGCTCTTATA
66 CTATTTCGCTCTTATA
* **
43589067 TGGTAAGATGACTGCTTTGCCC
1 TGGTAAAATGACTATTTTGCCC
43589089 TATTTGATGT
Statistics
Matches: 87, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
80 45 0.52
81 42 0.48
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.43
Consensus pattern (81 bp):
TGGTAAAATGACTATTTTGCCCATATATGGTAAAATGACTGTTTTTCCTCTATATGGTAAAATGA
CTATTTCGCTCTTATA
Found at i:43594440 original size:55 final size:53
Alignment explanation
Indices: 43594316--43594512 Score: 144
Period size: 55 Copynumber: 3.7 Consensus size: 53
43594306 AGGGTTTAAG
* * * * * ** * **
43594316 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTATGTTCTATAAGGCAGG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTAC-ATAAGGCAAA
* * *
43594370 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-ATAAGGCAAA
* * * * * * *
43594425 GATCCCATGTAAGACCATG-CGAAGGCATGGCAATGGTGAGTTCATAAGGCAAG
1 GATACCATGTAAGACCATGTC-AAGACATGGCAATGATAACTACATAAGGCAAA
** *
43594478 GATACCACATAAGACCATGTCAAGACATGGAAATG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATG
43594513 GTAAGTTTAA
Statistics
Matches: 114, Mismatches: 26, Indels: 7
0.78 0.18 0.05
Matches are distributed among these distances:
53 37 0.32
54 36 0.32
55 41 0.36
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.20
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAA
Found at i:43594495 original size:53 final size:54
Alignment explanation
Indices: 43594313--43594519 Score: 195
Period size: 53 Copynumber: 3.8 Consensus size: 54
43594303 ATTAGGGTTT
* * * *
43594313 AAGGATACCA-AGTAAGACCATGCCAAGGCATGGCATTGGTATGTTCTATAAGGC
1 AAGGATACCATA-TAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
* * * * * * * *
43594367 AGGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGT-AAGTTCTATAAGGC
* * * * *
43594422 AAAGATCCCATGTAAGACCATG-CGAAGGCATGGCAATGGTGAGTTC-ATAAGGC
1 AAGGATACCATATAAGACCATGTC-AAGACATGGCAATGGTAAGTTCTATAAGGC
* *
43594475 AAGGATACCACATAAGACCATGTCAAGACATGGAAATGGTAAGTT
1 AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGTAAGTT
43594520 TAAAAAGGAA
Statistics
Matches: 121, Mismatches: 28, Indels: 9
0.77 0.18 0.06
Matches are distributed among these distances:
53 43 0.36
54 37 0.31
55 41 0.34
ACGTcount: A:0.37, C:0.17, G:0.25, T:0.21
Consensus pattern (54 bp):
AAGGATACCATATAAGACCATGTCAAGACATGGCAATGGTAAGTTCTATAAGGC
Found at i:43597202 original size:24 final size:24
Alignment explanation
Indices: 43597156--43597205 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
43597146 CCATTCGAAA
43597156 CTTAAAATTTTAGGGCATTACACC
1 CTTAAAATTTTAGGGCATTACACC
*
43597180 CTTAAAATTTTGGGGCATTACACC
1 CTTAAAATTTTAGGGCATTACACC
43597204 CT
1 CT
43597206 CAGTTTTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34
Consensus pattern (24 bp):
CTTAAAATTTTAGGGCATTACACC
Found at i:43597534 original size:28 final size:29
Alignment explanation
Indices: 43597498--43597612 Score: 139
Period size: 28 Copynumber: 4.1 Consensus size: 29
43597488 AGCTGATCTA
* *
43597498 TTCAGAGTTCGCCACAAAGAC-ATTCCTT
1 TTCAGAGTTCGCCAAAAAGGCTATTCCTT
* * *
43597526 TTCTGAGTTTGCCATAAAGGCTATTCCTT
1 TTCAGAGTTCGCCAAAAAGGCTATTCCTT
43597555 TT-AGAGTTCGCCAAAAAGGCTATT-CTT
1 TTCAGAGTTCGCCAAAAAGGCTATTCCTT
**
43597582 TTCAGAGTTTTCCAAAAAGGCTATT-CTT
1 TTCAGAGTTCGCCAAAAAGGCTATTCCTT
43597610 TTC
1 TTC
43597613 TGTCGTGTTT
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
27 5 0.07
28 62 0.82
29 9 0.12
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.37
Consensus pattern (29 bp):
TTCAGAGTTCGCCAAAAAGGCTATTCCTT
Found at i:43598401 original size:17 final size:18
Alignment explanation
Indices: 43598379--43598413 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
43598369 TCACATTAAA
43598379 GTGTTTT-AGTGAAAACC
1 GTGTTTTCAGTGAAAACC
*
43598396 GTGTTTTCATTGAAAACC
1 GTGTTTTCAGTGAAAACC
43598414 CTTCTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (18 bp):
GTGTTTTCAGTGAAAACC
Found at i:43603552 original size:29 final size:29
Alignment explanation
Indices: 43603512--43603588 Score: 100
Period size: 29 Copynumber: 2.7 Consensus size: 29
43603502 AATCGTATTC
* *
43603512 ATATAGCCCATTAGGCCCAAATCACCTAT
1 ATATGGCCCATTAGGCCCAAATCACATAT
* * *
43603541 ATATGGCTCATTAGGACCAAATCACATTT
1 ATATGGCCCATTAGGCCCAAATCACATAT
*
43603570 ATATGGCCCGTTAGGCCCA
1 ATATGGCCCATTAGGCCCA
43603589 GTCATATTCA
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACATAT
Found at i:43603836 original size:16 final size:16
Alignment explanation
Indices: 43603815--43603845 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
43603805 CCAAACTTTT
*
43603815 GGCTTTTCGGCATTTC
1 GGCTTTTCAGCATTTC
43603831 GGCTTTTCAGCATTT
1 GGCTTTTCAGCATTT
43603846 ATAATGTGTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.45
Consensus pattern (16 bp):
GGCTTTTCAGCATTTC
Found at i:43606145 original size:76 final size:77
Alignment explanation
Indices: 43606042--43606218 Score: 284
Period size: 77 Copynumber: 2.3 Consensus size: 77
43606032 CAACCCCTTG
** * *
43606042 GGGGAATCAGCACATAGCAACCCCCTTT-TTATTTCAGAGATACGGTGGATATCGCACTTAGCAC
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACGGTGGATATCGCACATAGCAC
43606106 CACCAATGAACC
66 CACCAATGAACC
*
43606118 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACGGTGGATATCGTACATAGCAC
1 GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACGGTGGATATCGCACATAGCAC
*
43606183 CACCAATGAATC
66 CACCAATGAACC
*
43606195 GGGGAATCAGCACTTAGCAACCCC
1 GGGGAATCAGCACATAGCAACCCC
43606219 TCGGGGGAAT
Statistics
Matches: 93, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
76 28 0.30
77 65 0.70
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (77 bp):
GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATACGGTGGATATCGCACATAGCAC
CACCAATGAACC
Found at i:43606227 original size:27 final size:27
Alignment explanation
Indices: 43606195--43606247 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
43606185 CCAATGAATC
*
43606195 GGGGAATCAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
43606222 GGGGAATCAGCACATAGCAACCCCTC
1 GGGGAATCAGCACATAGCAACCCCTC
43606248 TATGTACAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.34, G:0.25, T:0.13
Consensus pattern (27 bp):
GGGGAATCAGCACATAGCAACCCCTCG
Found at i:43606608 original size:30 final size:29
Alignment explanation
Indices: 43606574--43606638 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
43606564 TAATCCACCA
43606574 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
43606604 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
43606634 CCCAA
1 CCCAA
43606639 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:43606612 original size:31 final size:30
Alignment explanation
Indices: 43606581--43606638 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
43606571 CCACCCAACT
43606581 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
43606611 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
43606639 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:43607624 original size:37 final size:37
Alignment explanation
Indices: 43607560--43607703 Score: 234
Period size: 37 Copynumber: 3.9 Consensus size: 37
43607550 AGCTCAGACG
* * *
43607560 AAATCTCCACACGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
43607597 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
43607634 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
43607671 TAATCACCACACGTAGTCATCGGGTCTTACCCG
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCG
43607704 TAATATATTT
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 102 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:43607906 original size:48 final size:48
Alignment explanation
Indices: 43607852--43608082 Score: 444
Period size: 48 Copynumber: 4.8 Consensus size: 48
43607842 GCACATCGCC
* *
43607852 TACATATTTCACACTAGCCATTCGGTTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
43607900 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
43607948 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
43607996 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
43608044 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATA
43608083 TGCATGTTCA
Statistics
Matches: 181, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
48 181 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:43608131 original size:47 final size:47
Alignment explanation
Indices: 43608052--43608245 Score: 298
Period size: 47 Copynumber: 4.1 Consensus size: 47
43608042 CATACATATT
* * *
43608052 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
43608099 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
43608146 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
43608193 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
43608240 TCACAT
1 TCACAT
43608246 AAAATCCTAA
Statistics
Matches: 134, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 134 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:43608172 original size:22 final size:22
Alignment explanation
Indices: 43608145--43608216 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
43608135 GCTCACATTC
43608145 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
43608167 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
43608191 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
43608214 ATC
1 ATC
43608217 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:43608178 original size:94 final size:94
Alignment explanation
Indices: 43607909--43608245 Score: 305
Period size: 94 Copynumber: 3.6 Consensus size: 94
43607899 ATACATATTT
* * * *
43607909 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
* * **
43607971 GGCTTTACCACATATA--CATATCTCATACATAT-TT
62 GGCCTTACCACATATATGCATGT-TC--ACAT-TCAC
* * * *
43608005 CACATTAGCCATTCGGCTTTA-C-CACATATACATATCTCATACATAT-TTCACATTAGCCATTC
1 CACATTGGCCATTCGGCCTTATCACACATATACACA-CTC--ACAT-TCATCACATTAGCCATTC
*
43608067 GGCTTTACCACATATATGCATGTTCACATTCAC
62 GGCCTTACCACATATATGCATGTTCACATTCAC
* ** *
43608100 CACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCC
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
* *
43608165 TTATCACATATATGCATGTTCACATTCAT
66 TTACCACATATATGCATGTTCACATTCAC
* * *
43608194 CACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACAT
43608246 AAAATCCTAA
Statistics
Matches: 217, Mismatches: 18, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
93 1 0.00
94 95 0.44
95 23 0.11
96 82 0.38
97 12 0.06
98 4 0.02
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.34
Consensus pattern (94 bp):
CACATTGGCCATTCGGCCTTATCACACATATACACACTCACATTCATCACATTAGCCATTCGGCC
TTACCACATATATGCATGTTCACATTCAC
Found at i:43613496 original size:29 final size:28
Alignment explanation
Indices: 43613463--43613527 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 28
43613453 ACATTTAACT
43613463 AATTTAATCAAAATAAAAAATGAAAATTG
1 AATTTAATCAAAATAAAAAATGAAAA-TG
* ** *
43613492 AATTTATTCATTATTAAAAATGAAAATG
1 AATTTAATCAAAATAAAAAATGAAAATG
*
43613520 AAATTAAT
1 AATTTAAT
43613528 TATTTTTTTA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 8 0.27
29 22 0.73
ACGTcount: A:0.57, C:0.03, G:0.06, T:0.34
Consensus pattern (28 bp):
AATTTAATCAAAATAAAAAATGAAAATG
Found at i:43625230 original size:31 final size:31
Alignment explanation
Indices: 43625183--43625252 Score: 106
Period size: 31 Copynumber: 2.3 Consensus size: 31
43625173 ATACTGGACT
* *
43625183 GAAGCC-TTTCATAATTCATAACACTGGGCC
1 GAAGCCTTTTCAAAATTCATAACACTAGGCC
*
43625213 GAAGCCTTTTCAAAATTCATATCACTAGGCC
1 GAAGCCTTTTCAAAATTCATAACACTAGGCC
43625244 GAAGCCTTT
1 GAAGCCTTT
43625253 ACTGTAAGCG
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
30 6 0.17
31 30 0.83
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.29
Consensus pattern (31 bp):
GAAGCCTTTTCAAAATTCATAACACTAGGCC
Found at i:43625491 original size:24 final size:25
Alignment explanation
Indices: 43625464--43625516 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
43625454 GCCTAGCCTC
43625464 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
43625488 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
43625513 TTTT
1 TTTT
43625517 GCACTTCCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:43625599 original size:11 final size:10
Alignment explanation
Indices: 43625583--43625619 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
43625573 CATCTGATAA
43625583 CATATCATGT
1 CATATCATGT
43625593 GCATATCATGT
1 -CATATCATGT
43625604 CATATCATGT
1 CATATCATGT
43625614 -ATATCA
1 CATATCA
43625620 AAATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.38
Consensus pattern (10 bp):
CATATCATGT
Found at i:43625607 original size:21 final size:21
Alignment explanation
Indices: 43625563--43625613 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
43625553 TATAGTGAGT
* *
43625563 ATATCATGTGCATCTGATAAC
1 ATATCATGTGCATATCATAAC
**
43625584 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
43625605 ATATCATGT
1 ATATCATGT
43625614 ATATCAAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:43633957 original size:40 final size:40
Alignment explanation
Indices: 43633913--43634177 Score: 378
Period size: 40 Copynumber: 6.7 Consensus size: 40
43633903 GCTCCTCGTT
* *
43633913 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
43633953 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
43633993 CAAATGCCTTCGGG-CTTAGCCCGGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCC-GGATTTAGTAACTCGCA
*
43634033 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
43634073 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * *
43634113 CAAATGCCTTCGGGTCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TTAGTAAC-TCGCA
43634154 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43634178 CATCATTCAA
Statistics
Matches: 208, Mismatches: 12, Indels: 11
0.90 0.05 0.05
Matches are distributed among these distances:
39 26 0.12
40 166 0.80
41 16 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:43638362 original size:45 final size:45
Alignment explanation
Indices: 43638298--43638386 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
43638288 AACAGATACT
* *
43638298 CGGTGGATTCAACACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
*
43638343 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGT
43638387 TTGGTTCACA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:43638455 original size:51 final size:52
Alignment explanation
Indices: 43638397--43638532 Score: 179
Period size: 50 Copynumber: 2.7 Consensus size: 52
43638387 TTGGTTCACA
* *
43638397 TAGTAGCCTACACATAGTACTACACATGTGACCATTACCA-TCCGATACATG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
* * ** *
43638448 TAGTAGCCTGCACATAGTACTACACATGCGACC--TATCATTTTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
*
43638498 TAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 TAGTAGCCTGCACATAGTACTACACATGTGACCAT
43638533 CACTTTCACT
Statistics
Matches: 73, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
49 4 0.05
50 38 0.52
51 31 0.42
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.26
Consensus pattern (52 bp):
TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCCGATACACG
Found at i:43643433 original size:40 final size:40
Alignment explanation
Indices: 43643389--43643650 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
43643379 GCTCCTCGTT
* *
43643389 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
43643429 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
43643469 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
43643508 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
43643547 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
43643586 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
43643627 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43643651 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:43645814 original size:31 final size:31
Alignment explanation
Indices: 43645759--43645836 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
43645749 CTCAACATAT
* *
43645759 ACTGGGCTGAAGCC-TTTCATAATTCATAAC
1 ACTGGGCCGAAGCCTTTTCAAAATTCATAAC
*
43645789 ACTGGGCCGAAGCCTTTTCAAAATTCATATC
1 ACTGGGCCGAAGCCTTTTCAAAATTCATAAC
*
43645820 ACTAGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
43645837 ACTGTAAGCG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
30 13 0.30
31 30 0.70
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCAAAATTCATAAC
Found at i:43646075 original size:24 final size:25
Alignment explanation
Indices: 43646048--43646100 Score: 90
Period size: 25 Copynumber: 2.2 Consensus size: 25
43646038 GCCTAGCCTC
43646048 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
*
43646072 TTTTGATAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
43646097 TTTT
1 TTTT
43646101 GCACTTCCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
24 6 0.22
25 21 0.78
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:43646172 original size:21 final size:21
Alignment explanation
Indices: 43646147--43646197 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
43646137 TATAATGAGT
*
43646147 ATATCATGTGCATCTCATAAC
1 ATATCATGTGCATATCATAAC
**
43646168 ATATCATGTGCATATCATGTC
1 ATATCATGTGCATATCATAAC
43646189 ATATCATGT
1 ATATCATGT
43646198 ATAACAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (21 bp):
ATATCATGTGCATATCATAAC
Found at i:43646191 original size:10 final size:11
Alignment explanation
Indices: 43646133--43646197 Score: 62
Period size: 11 Copynumber: 6.1 Consensus size: 11
43646123 ACCCAACCCA
*
43646133 TGCATATAATG
1 TGCATATCATG
* *
43646144 AGTATATCATG
1 TGCATATCATG
*
43646155 TGCATCTCAT-
1 TGCATATCATG
**
43646165 AACATATCATG
1 TGCATATCATG
43646176 TGCATATCATG
1 TGCATATCATG
43646187 T-CATATCATG
1 TGCATATCATG
43646197 T
1 T
43646198 ATAACAAAAT
Statistics
Matches: 42, Mismatches: 11, Indels: 3
0.75 0.20 0.05
Matches are distributed among these distances:
10 17 0.40
11 25 0.60
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (11 bp):
TGCATATCATG
Found at i:43650901 original size:46 final size:45
Alignment explanation
Indices: 43650829--43650996 Score: 189
Period size: 46 Copynumber: 3.6 Consensus size: 45
43650819 TGTAACCCGC
*
43650829 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTT-GCAT
* *
43650875 CCATGAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTGCAT
* * * *
43650925 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGC-GTTGCAT
43650968 CCATAAGTGAACTCGGACTCAACTCAACG
1 CCATAAGTGAACTCGGACTCAACTCAACG
43650997 TGTAACACCC
Statistics
Matches: 104, Mismatches: 10, Indels: 16
0.80 0.08 0.12
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 55 0.53
47 28 0.27
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTGCAT
Found at i:43654376 original size:26 final size:26
Alignment explanation
Indices: 43654343--43654414 Score: 117
Period size: 26 Copynumber: 2.8 Consensus size: 26
43654333 GAGCTTAAAA
*
43654343 CAGTAAGCTCTTACGAGCTGATATGT
1 CAGTAAGCTCTTACGAGCTGATATAT
43654369 CAGTAAGCTCTTACGAGCTGATATAT
1 CAGTAAGCTCTTACGAGCTGATATAT
* *
43654395 CGGTAAGCTCTGACGAGCTG
1 CAGTAAGCTCTTACGAGCTG
43654415 TGGTGAGTTG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 43 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CAGTAAGCTCTTACGAGCTGATATAT
Found at i:43657030 original size:44 final size:43
Alignment explanation
Indices: 43656967--43657108 Score: 150
Period size: 44 Copynumber: 3.3 Consensus size: 43
43656957 TGTGTTATCG
*
43656967 TGTAAGACCACGTGTGGGACGTTGGCATCGACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGACTT-TGATTTACA
*
43657011 TGTAAGACCACGTCTGGGACATTGGCATCGTAC-TTGATTT-CA
1 TGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTTGATTTACA
* * * *
43657053 TGTAATA-CACTATCTGGGACAG-TGGCTTCGATATTTGA-TTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGA-CTTTGATTTACA
43657096 TGTAAGACCACGT
1 TGTAAGACCACGT
43657109 TAGATACGTT
Statistics
Matches: 82, Mismatches: 9, Indels: 15
0.77 0.08 0.14
Matches are distributed among these distances:
41 4 0.05
42 25 0.30
43 19 0.23
44 32 0.39
45 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGACTTTGATTTACA
Found at i:43658367 original size:15 final size:15
Alignment explanation
Indices: 43658307--43658371 Score: 55
Period size: 15 Copynumber: 4.4 Consensus size: 15
43658297 TAAAGATAAC
* *
43658307 AAGAAAACC-GAAAA
1 AAGAAATCCAGAATA
43658321 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
43658336 GAA-AAACCCAGATTA
1 -AAGAAATCCAGAATA
43658351 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
43658366 AAGAAA
1 AAGAAA
43658372 CCCAAGATAT
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
14 11 0.28
15 26 0.65
16 3 0.08
ACGTcount: A:0.63, C:0.14, G:0.14, T:0.09
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:43661443 original size:49 final size:49
Alignment explanation
Indices: 43661390--43661618 Score: 284
Period size: 49 Copynumber: 4.7 Consensus size: 49
43661380 CTGGTACGCA
* * *
43661390 TAGTAGCCTGCACATAGTACTACACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* *
43661439 TAGTAGCCTGAACTTAGTACTACACACGTGACCAATTATCCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* * *
43661488 TAGTAGCCTGTACTTAGTACTACACACGTGACACCATT-T--GATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC-CAATTATCCGGTACACG
* * * * *
43661535 TAGTAGCCTGCACTTAGTACTACACACGTGATCATAGTTTTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCA-A-TTATCCGGTACACG
*
43661586 TAGTAGCCTGCACTTAGTACTACACATGTGACC
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC
43661619 TCACAATAGA
Statistics
Matches: 157, Mismatches: 17, Indels: 10
0.85 0.09 0.05
Matches are distributed among these distances:
46 1 0.01
47 37 0.24
48 2 0.01
49 77 0.49
50 4 0.03
51 36 0.23
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:43669554 original size:44 final size:42
Alignment explanation
Indices: 43669484--43669641 Score: 128
Period size: 43 Copynumber: 3.7 Consensus size: 42
43669474 TATGTGTTAT
* * *
43669484 CGTGTAAGACCACATCTGTGATGTTGGCATCGACTTATGATTTA
1 CGTGTAAGACCACGTCTGGGACGTTGGCATC-ACTT-TGATTTA
43669528 CGTGTAAGACCACGTCTGGGACGTTGGCATCA-TACTTGATTT-
1 CGTGTAAGACCACGTCTGGGACGTTGGCATCACT--TTGATTTA
* *
43669570 CGTGTAAAACC-CTGTCTGGGACAG-TGGCATCAATATTTGA-TTA
1 CGTGTAAGACCAC-GTCTGGGAC-GTTGGCATC-A-CTTTGATTTA
* * * *
43669613 CATGTATGACCATGTCTGGGACATTGGCA
1 CGTGTAAGACCACGTCTGGGACGTTGGCA
43669642 CTATACGAGC
Statistics
Matches: 95, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
41 1 0.01
42 29 0.31
43 35 0.37
44 29 0.31
45 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACGTTGGCATCACTTTGATTTA
Found at i:43669587 original size:42 final size:43
Alignment explanation
Indices: 43669521--43669641 Score: 131
Period size: 43 Copynumber: 2.8 Consensus size: 43
43669511 CATCGACTTA
43669521 TGATTTACGTGTAAGACCAC-GTCTGGGACGTTGGCATC-ATACT
1 TGATTT-CGTGTAAGACC-CTGTCTGGGACGTTGGCATCAATACT
* *
43669564 TGATTTCGTGTAAAACCCTGTCTGGGACAG-TGGCATCAATATT
1 TGATTTCGTGTAAGACCCTGTCTGGGAC-GTTGGCATCAATACT
* * * * *
43669607 TGATTACATGTATGACCATGTCTGGGACATTGGCA
1 TGATTTCGTGTAAGACCCTGTCTGGGACGTTGGCA
43669642 CTATACGAGC
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
41 1 0.02
42 26 0.39
43 39 0.59
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TGATTTCGTGTAAGACCCTGTCTGGGACGTTGGCATCAATACT
Found at i:43674604 original size:55 final size:55
Alignment explanation
Indices: 43674503--43674615 Score: 163
Period size: 55 Copynumber: 2.1 Consensus size: 55
43674493 AGATCTCCAA
*
43674503 CTTCAAATTGCCTTCGTTGCTTCAAACGAGCATCATGGCGGTGCTTCGTCGCTTC
1 CTTCAAATTGCCTTCGTTGCTTCAAACGAGCATCATGGCGGCGCTTCGTCGCTTC
** * * * *
43674558 CTTCAAATTGCCTTTTTTGCTTCAAACGGGCGTCGTGGTGGCGCTTCGTCGCTTC
1 CTTCAAATTGCCTTCGTTGCTTCAAACGAGCATCATGGCGGCGCTTCGTCGCTTC
43674613 CTT
1 CTT
43674616 GTATAAGTGT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.13, C:0.28, G:0.23, T:0.35
Consensus pattern (55 bp):
CTTCAAATTGCCTTCGTTGCTTCAAACGAGCATCATGGCGGCGCTTCGTCGCTTC
Found at i:43682151 original size:42 final size:42
Alignment explanation
Indices: 43682089--43682210 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 42
43682079 TGGGGGTTAC
*
43682089 TGAGATTACATGTAAAACCATATCTGGGATATGGCATCGATA
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
* * * *
43682131 TGAGACTT-CATGTAAGACCATAGCTAGGCTATTGGCATTGATA
1 TGAGA-TTACATGTAAGACCATATCTGGGATA-TGGCATCGATA
* *
43682174 CGAGATTACATGTAAGACCATGTCTGGGATATGGCAT
1 TGAGATTACATGTAAGACCATATCTGGGATATGGCAT
43682211 TGGTACAGTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.32, C:0.16, G:0.24, T:0.29
Consensus pattern (42 bp):
TGAGATTACATGTAAGACCATATCTGGGATATGGCATCGATA
Found at i:43683709 original size:13 final size:13
Alignment explanation
Indices: 43683693--43683723 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
43683683 AGTCACGGCA
*
43683693 GTGTGTCTCGACC
1 GTGTGTCTCAACC
43683706 GTGTGTCTCAACC
1 GTGTGTCTCAACC
43683719 GTGTG
1 GTGTG
43683724 AAGGACATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.26, G:0.32, T:0.32
Consensus pattern (13 bp):
GTGTGTCTCAACC
Found at i:43690326 original size:27 final size:27
Alignment explanation
Indices: 43690289--43690401 Score: 140
Period size: 27 Copynumber: 4.2 Consensus size: 27
43690279 AGCATGGCTG
* *
43690289 CCAGA-ACAGATATTGTGACAGAGTCA
1 CCAGATACAGATATTGTGGCAGAGCCA
43690315 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGATACAGATATTGTGGCAGAGCCA
* *
43690342 CTAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGATACAGATA-TTGTGGCAGAGCCA
* *
43690370 CCAGAT-CAGATATTTGTGGTAGACCCA
1 CCAGATACAGATA-TTGTGGCAGAGCCA
43690397 CCAGA
1 CCAGA
43690402 ACGCTTCCTC
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
26 5 0.06
27 54 0.70
28 18 0.23
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CCAGATACAGATATTGTGGCAGAGCCA
Found at i:43690381 original size:54 final size:55
Alignment explanation
Indices: 43690289--43690402 Score: 153
Period size: 55 Copynumber: 2.1 Consensus size: 55
43690279 AGCATGGCTG
* *
43690289 CCAG-AACAGATATTGTGACAGAGTCACCAGATACAGATA-TTGTGGCAGAGCCA
1 CCAGAAACAGATATTGTGACAGAGCCACCAGATACAGATATTTGTGGCAGACCCA
* * *
43690342 CTAGAAACAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGTAGACCCA
1 CCAGAAACAGATA-TTGTGACAGAGCCACCAGATACAGATATTTGTGGCAGACCCA
43690397 CCAGAA
1 CCAGAA
43690403 CGCTTCCTCC
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
53 3 0.06
54 14 0.27
55 35 0.67
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (55 bp):
CCAGAAACAGATATTGTGACAGAGCCACCAGATACAGATATTTGTGGCAGACCCA
Found at i:43693302 original size:40 final size:40
Alignment explanation
Indices: 43693265--43693396 Score: 142
Period size: 40 Copynumber: 3.3 Consensus size: 40
43693255 GCTACTCGTT
*
43693265 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
* * *
43693305 CAACTGCCTTCGGGACTTAACCGGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* ** * * * *
43693345 CCAATGCCTTTAGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
43693384 CAAATGCCTTCGG
1 CAAATGCCTTCGG
43693397 ATCTTAGTCC
Statistics
Matches: 76, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 31 0.41
40 43 0.57
41 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:43701433 original size:65 final size:65
Alignment explanation
Indices: 43701329--43701459 Score: 244
Period size: 65 Copynumber: 2.0 Consensus size: 65
43701319 GGCTCAACTA
*
43701329 ATTCAAAGCACATACGAAACATACCTCAATGTTGGGATGTTACGAGCGTATTAACTGAAATGTTT
1 ATTCAAAGCACATACGAAACATACCTCAATGTTGGGATGTTACAAGCGTATTAACTGAAATGTTT
*
43701394 ATTCAAAGCACATACGAAACATACCTCAATGTTGGGATGTTACAAGCGTATTAACTGAAATTTTT
1 ATTCAAAGCACATACGAAACATACCTCAATGTTGGGATGTTACAAGCGTATTAACTGAAATGTTT
43701459 A
1 A
43701460 CAGCAAGATC
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.30
Consensus pattern (65 bp):
ATTCAAAGCACATACGAAACATACCTCAATGTTGGGATGTTACAAGCGTATTAACTGAAATGTTT
Found at i:43701560 original size:40 final size:40
Alignment explanation
Indices: 43701523--43701653 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 40
43701513 GCTACTCGTT
*
43701523 CAAATGCCTTCGAAACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGAAACATAACCCGGATT-TAGTAACTCGCA
** *
43701563 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGAAACATAACCCGGATTTAGTAACTCGCA
* ** * * * *
43701603 CCAATGCCTTCG-GGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGAAACATAACCCGGATTTAGTAACTCGCA
43701642 CAAATGCCTTCG
1 CAAATGCCTTCG
43701654 GATCTTAGTC
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 34 0.43
40 44 0.55
41 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGAAACATAACCCGGATTTAGTAACTCGCA
Found at i:43701626 original size:79 final size:80
Alignment explanation
Indices: 43701551--43701707 Score: 203
Period size: 79 Copynumber: 2.0 Consensus size: 80
43701541 AGCCCGGTTA
* * *
43701551 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCACCAATGCCTTC
1 TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCGGATATAGTAACTTAGCA-CAAAGCCTTC
43701614 GGG-CTTAGCCCGGAAT
64 GGGACTTAGCCCGGAAT
* ** * *
43701630 TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
43701695 GACTTAGCCCGGA
66 GACTTAGCCCGGA
43701708 CATCATTCGA
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.04
79 49 0.73
80 15 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGATATAGTAACTTAGCACAAAGCCTTCGG
GACTTAGCCCGGAAT
Found at i:43701640 original size:39 final size:40
Alignment explanation
Indices: 43701551--43701707 Score: 169
Period size: 40 Copynumber: 4.0 Consensus size: 40
43701541 AGCCCGGTTA
*
43701551 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
* *
43701591 TAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGAAT
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
* **
43701630 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG-AT
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGAAT
* * * *
43701669 ATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 -TAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGA
43701708 CATCATTCGA
Statistics
Matches: 100, Mismatches: 11, Indels: 11
0.82 0.09 0.09
Matches are distributed among these distances:
38 2 0.02
39 34 0.34
40 53 0.53
41 11 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAAT
Found at i:43707695 original size:12 final size:12
Alignment explanation
Indices: 43707673--43707717 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
43707663 TTCGAATTGG
43707673 TTGATGGAGAGAT
1 TTGA-GGAGAGAT
*
43707686 TAGAGGAGAGAT
1 TTGAGGAGAGAT
*
43707698 TTGGGGAGAGAT
1 TTGAGGAGAGAT
43707710 TTGAGGAG
1 TTGAGGAG
43707718 TGGATCAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
12 25 0.89
13 3 0.11
ACGTcount: A:0.31, C:0.00, G:0.44, T:0.24
Consensus pattern (12 bp):
TTGAGGAGAGAT
Found at i:43718402 original size:19 final size:19
Alignment explanation
Indices: 43718378--43718442 Score: 69
Period size: 19 Copynumber: 3.3 Consensus size: 19
43718368 GATAGACTAT
43718378 CAAAACTACCCAAATCCCC
1 CAAAACTACCCAAATCCCC
* * *
43718397 CAAAAC-ACTCCCACTACCCAT
1 CAAAACTAC-CCAAAT-CCC-C
43718418 CAAAACTACCCAAATCCCC
1 CAAAACTACCCAAATCCCC
43718437 CAAAAC
1 CAAAAC
43718443 ACTCCCACTA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
18 2 0.06
19 16 0.44
20 6 0.17
21 10 0.28
22 2 0.06
ACGTcount: A:0.43, C:0.46, G:0.00, T:0.11
Consensus pattern (19 bp):
CAAAACTACCCAAATCCCC
Found at i:43718422 original size:21 final size:20
Alignment explanation
Indices: 43718393--43718454 Score: 65
Period size: 19 Copynumber: 3.1 Consensus size: 20
43718383 CTACCCAAAT
43718393 CCCCCAAAACACTCCCACTA
1 CCCCCAAAACACTCCCACTA
* * *
43718413 CCCATCAAAACTAC-CCAAAT-
1 CCC-CCAAAAC-ACTCCCACTA
43718433 CCCCCAAAACACTCCCACTA
1 CCCCCAAAACACTCCCACTA
43718453 CC
1 CC
43718455 TCTCAAATTC
Statistics
Matches: 32, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
18 2 0.06
19 10 0.31
20 8 0.25
21 10 0.31
22 2 0.06
ACGTcount: A:0.37, C:0.52, G:0.00, T:0.11
Consensus pattern (20 bp):
CCCCCAAAACACTCCCACTA
Found at i:43718461 original size:21 final size:20
Alignment explanation
Indices: 43718397--43718461 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
43718387 CCAAATCCCC
43718397 CAAAACACTCCCACTACCCAT
1 CAAAACACTCCCACTACCC-T
* * *
43718418 CAAAACTAC-CCAAAT-CCCC
1 CAAAAC-ACTCCCACTACCCT
43718437 CAAAACACTCCCACTACCTCT
1 CAAAACACTCCCACTACC-CT
43718458 CAAA
1 CAAA
43718462 TTCCCAAAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
18 2 0.06
19 10 0.29
20 5 0.15
21 15 0.44
22 2 0.06
ACGTcount: A:0.40, C:0.46, G:0.00, T:0.14
Consensus pattern (20 bp):
CAAAACACTCCCACTACCCT
Found at i:43718461 original size:40 final size:40
Alignment explanation
Indices: 43718376--43718454 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
43718366 CAGATAGACT
43718376 ATCAAAACTACCCAAATCCCCCAAAACACTCCCACTACCC
1 ATCAAAACTACCCAAATCCCCCAAAACACTCCCACTACCC
43718416 ATCAAAACTACCCAAATCCCCCAAAACACTCCCACTACC
1 ATCAAAACTACCCAAATCCCCCAAAACACTCCCACTACC
43718455 TCTCAAATTC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.41, C:0.47, G:0.00, T:0.13
Consensus pattern (40 bp):
ATCAAAACTACCCAAATCCCCCAAAACACTCCCACTACCC
Found at i:43720092 original size:26 final size:26
Alignment explanation
Indices: 43720056--43720108 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
43720046 CCATTCTTGA
43720056 AAGAAAATTTTCTAGTAGGACCTCCT
1 AAGAAAATTTTCTAGTAGGACCTCCT
43720082 AAGAAAATTTTCTAGTAGGACCTCCT
1 AAGAAAATTTTCTAGTAGGACCTCCT
43720108 A
1 A
43720109 CTTTATTAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (26 bp):
AAGAAAATTTTCTAGTAGGACCTCCT
Found at i:43727895 original size:21 final size:21
Alignment explanation
Indices: 43727870--43727909 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
43727860 GAATATACTT
43727870 ATCTAACTCACATATAATCGA
1 ATCTAACTCACATATAATCGA
43727891 ATCTAACTCACATATAATC
1 ATCTAACTCACATATAATC
43727910 TTCAATTGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.25, G:0.03, T:0.30
Consensus pattern (21 bp):
ATCTAACTCACATATAATCGA
Found at i:43731489 original size:37 final size:37
Alignment explanation
Indices: 43731439--43731707 Score: 267
Period size: 37 Copynumber: 7.8 Consensus size: 37
43731429 TCCTTGAAAC
43731439 AGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
1 AGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
*
43731476 AGAAAAGATAGAGATGAACATAAATGATTCACTACAA
1 AGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
* **
43731513 AGAAAAGAT-G-GA-G--C-T-ATTCCTT-G--A-AA
1 AGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
43731539 CAGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
1 -AGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
*
43731577 AGAAAAGATAGAGATGAACATAAATGATTCACTACAA
1 AGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
* **
43731614 AGAAAAGAT-G-GA-G--C-T-ATTCCTT-G--A-AA
1 AGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
43731640 CAGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
1 -AGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
* * *
43731678 AGAAAAGATGGAGCTGAACATAAGTGATTC
1 AGAAAAGATAGAGATGAACATAAATGATTC
43731708 TCTGTAAAAA
Statistics
Matches: 189, Mismatches: 19, Indels: 48
0.74 0.07 0.19
Matches are distributed among these distances:
26 4 0.02
27 20 0.11
28 2 0.01
29 4 0.02
30 10 0.05
31 2 0.01
32 4 0.02
33 2 0.01
34 10 0.05
35 6 0.03
36 2 0.01
37 119 0.63
38 4 0.02
ACGTcount: A:0.49, C:0.12, G:0.20, T:0.20
Consensus pattern (37 bp):
AGAAAAGATAGAGATGAACATAAATGATTCGCTACAA
Found at i:43731542 original size:101 final size:101
Alignment explanation
Indices: 43731426--43731707 Score: 537
Period size: 101 Copynumber: 2.8 Consensus size: 101
43731416 AGCCTTCAAA
43731426 TATTCCTTGAAACAGAAAAGATAGAGATGAACATAAATGATTCGCTACAAAGAAAAGATAGAGAT
1 TATTCCTTGAAACAGAAAAGATAGAGATGAACATAAATGATTCGCTACAAAGAAAAGATAGAGAT
43731491 GAACATAAATGATTCACTACAAAGAAAAGATGGAGC
66 GAACATAAATGATTCACTACAAAGAAAAGATGGAGC
43731527 TATTCCTTGAAACAGAAAAGATAGAGATGAACATAAATGATTCGCTACAAAGAAAAGATAGAGAT
1 TATTCCTTGAAACAGAAAAGATAGAGATGAACATAAATGATTCGCTACAAAGAAAAGATAGAGAT
43731592 GAACATAAATGATTCACTACAAAGAAAAGATGGAGC
66 GAACATAAATGATTCACTACAAAGAAAAGATGGAGC
* *
43731628 TATTCCTTGAAACAGAAAAGATAGAGATGAACATAAATGATTCGCTACAAAGAAAAGATGGAGCT
1 TATTCCTTGAAACAGAAAAGATAGAGATGAACATAAATGATTCGCTACAAAGAAAAGATAGAGAT
*
43731693 GAACATAAGTGATTC
66 GAACATAAATGATTC
43731708 TCTGTAAAAA
Statistics
Matches: 178, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 178 1.00
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (101 bp):
TATTCCTTGAAACAGAAAAGATAGAGATGAACATAAATGATTCGCTACAAAGAAAAGATAGAGAT
GAACATAAATGATTCACTACAAAGAAAAGATGGAGC
Found at i:43732090 original size:14 final size:15
Alignment explanation
Indices: 43732036--43732087 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 15
43732026 GAAGTTTTTT
43732036 ATTTCAAAAATTTAA
1 ATTTCAAAAATTTAA
43732051 A-TTCAAAACA---AA
1 ATTTCAAAA-ATTTAA
43732063 ATTTTCAAAAATTTAA
1 A-TTTCAAAAATTTAA
43732079 ATTTCAAAA
1 ATTTCAAAA
43732088 TTTTCCTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 12
0.72 0.00 0.28
Matches are distributed among these distances:
12 3 0.10
13 1 0.03
14 14 0.45
15 10 0.32
16 3 0.10
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.35
Consensus pattern (15 bp):
ATTTCAAAAATTTAA
Found at i:43736942 original size:18 final size:19
Alignment explanation
Indices: 43736920--43736973 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
43736910 GATAAAAGAT
*
43736920 AAAAAATAAAAAATTTTAG
1 AAAAATTAAAAAATTTTAG
* *
43736939 AAAAATTATAAAATTTTAAT
1 AAAAATTAAAAAATTTT-AG
*
43736959 AAAAATTTAAAAATT
1 AAAAATTAAAAAATT
43736974 AGAAATTTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
19 15 0.52
20 14 0.48
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (19 bp):
AAAAATTAAAAAATTTTAG
Found at i:43736971 original size:20 final size:18
Alignment explanation
Indices: 43736921--43736973 Score: 61
Period size: 20 Copynumber: 2.8 Consensus size: 18
43736911 ATAAAAGATA
* *
43736921 AAAAATAAAAAATTTTAG
1 AAAAATTAAAAATTTTAT
43736939 AAAAATTATAAAATTTTAAT
1 AAAAATTA-AAAATTTT-AT
43736959 AAAAATTTAAAAATT
1 AAAAA-TTAAAAATT
43736974 AGAAATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 7 0.23
19 8 0.27
20 12 0.40
21 3 0.10
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (18 bp):
AAAAATTAAAAATTTTAT
Found at i:43737038 original size:37 final size:37
Alignment explanation
Indices: 43736957--43737037 Score: 103
Period size: 36 Copynumber: 2.2 Consensus size: 37
43736947 TAAAATTTTA
* * *
43736957 ATAAAAATTTAAAAATTAGAAATTTTTTATAAAATTC
1 ATAAAAAATAAAAAATTAGAAATTTTTTATAAAAATC
*
43736994 GTAAAAAATAAAAAATT-GTAAA-TTTTTATAAAAATC
1 ATAAAAAATAAAAAATTAG-AAATTTTTTATAAAAATC
43737030 ATAAAAAA
1 ATAAAAAA
43737038 AATTAATGAC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
36 21 0.55
37 17 0.45
ACGTcount: A:0.59, C:0.02, G:0.04, T:0.35
Consensus pattern (37 bp):
ATAAAAAATAAAAAATTAGAAATTTTTTATAAAAATC
Found at i:43737250 original size:10 final size:10
Alignment explanation
Indices: 43737235--43737260 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
43737225 TTCTTACGAC
43737235 TTTATAAAAT
1 TTTATAAAAT
43737245 TTTATAAAAT
1 TTTATAAAAT
43737255 TTTATA
1 TTTATA
43737261 TTTCTATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (10 bp):
TTTATAAAAT
Found at i:43737290 original size:27 final size:26
Alignment explanation
Indices: 43737243--43737313 Score: 70
Period size: 27 Copynumber: 2.6 Consensus size: 26
43737233 ACTTTATAAA
* *
43737243 ATTTTATAAAATTTTATATTTCTATAT
1 ATTTTAT-AATTTTTAAATTTCTATAT
*
43737270 ATTTTATAATTTTTACAATTTTTATAT
1 ATTTTATAATTTTTA-AATTTCTATAT
* *
43737297 GTTTTACTATTTTTTAA
1 ATTTTA-TAATTTTTAA
43737314 TGAATTTTTA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 7 0.19
27 22 0.59
28 8 0.22
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (26 bp):
ATTTTATAATTTTTAAATTTCTATAT
Found at i:43737292 original size:18 final size:19
Alignment explanation
Indices: 43737271--43737315 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
43737261 TTTCTATATA
43737271 TTTTATAAT-TTTTACAAT
1 TTTTATAATGTTTTACAAT
*
43737289 TTTTAT-ATGTTTTACTAT
1 TTTTATAATGTTTTACAAT
43737307 TTTT-TAATG
1 TTTTATAATG
43737316 AATTTTTAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 3 0.12
18 21 0.88
ACGTcount: A:0.27, C:0.04, G:0.04, T:0.64
Consensus pattern (19 bp):
TTTTATAATGTTTTACAAT
Found at i:43737401 original size:21 final size:21
Alignment explanation
Indices: 43737377--43737420 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
43737367 TATTGATTTG
* *
43737377 AATTTTTTATAGTTTTTTATA
1 AATTTTTTATAATTTTTAATA
*
43737398 AATTTTTTTTAATTTTTAATA
1 AATTTTTTATAATTTTTAATA
43737419 AA
1 AA
43737421 ATCAAAGGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (21 bp):
AATTTTTTATAATTTTTAATA
Found at i:43738621 original size:28 final size:28
Alignment explanation
Indices: 43738586--43738640 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
43738576 CAAATTACAT
43738586 GGACTAATAATAGAATTTAACCTTTTTG
1 GGACTAATAATAGAATTTAACCTTTTTG
43738614 GGACTAATAATAGAATTTAACCTTTTT
1 GGACTAATAATAGAATTTAACCTTTTT
43738641 TTAACTAATC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.13, T:0.40
Consensus pattern (28 bp):
GGACTAATAATAGAATTTAACCTTTTTG
Found at i:43738647 original size:28 final size:28
Alignment explanation
Indices: 43738588--43738649 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
43738578 AATTACATGG
*
43738588 ACTAATAATAGAATTTAACCTTTTTGGG
1 ACTAATAATAGAATTTAACCTTTTTGGA
**
43738616 ACTAATAATAGAATTTAACCTTTTTTTA
1 ACTAATAATAGAATTTAACCTTTTTGGA
43738644 ACTAAT
1 ACTAAT
43738650 CACGTTATCT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (28 bp):
ACTAATAATAGAATTTAACCTTTTTGGA
Found at i:43739036 original size:9 final size:10
Alignment explanation
Indices: 43739015--43739039 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
43739005 CACACGGTAT
43739015 AAAATTTTAA
1 AAAATTTTAA
43739025 AAAATTTTAA
1 AAAATTTTAA
43739035 AAAAT
1 AAAAT
43739040 AATATCATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAAATTTTAA
Found at i:43743155 original size:39 final size:37
Alignment explanation
Indices: 43743074--43743232 Score: 117
Period size: 38 Copynumber: 4.1 Consensus size: 37
43743064 TGGTCTGAAC
* * *
43743074 TAAAGACATGTATTAAAGACGTCTAAACTAGGACATATT
1 TAAA-ACAT-TATTAAAGATGTCTAAACTATGACATAAT
*
43743113 TAAAACATATATTTAAGATGTCCTAAACTATGACATAAT
1 TAAAACAT-TATTAAAGATGT-CTAAACTATGACATAAT
* * *
43743152 TAAAAACCCTTATTAAAGATGT-TCAGATTATGACATAAT
1 T-AAAA-CATTATTAAAGATGTCT-AAACTATGACATAAT
* * *
43743191 TAAAAC-TAATATAAATAATGT-TCAAATTATGACATAAT
1 TAAAACATTAT-TAAA-GATGTCT-AAACTATGACATAAT
43743229 TAAA
1 TAAA
43743233 TACTTAAACT
Statistics
Matches: 102, Mismatches: 12, Indels: 13
0.80 0.09 0.10
Matches are distributed among these distances:
36 3 0.03
37 5 0.05
38 43 0.42
39 34 0.33
40 15 0.15
41 2 0.02
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.32
Consensus pattern (37 bp):
TAAAACATTATTAAAGATGTCTAAACTATGACATAAT
Found at i:43743273 original size:24 final size:23
Alignment explanation
Indices: 43743229--43743274 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
43743219 ATGACATAAT
* *
43743229 TAAATACTTAAACTAATTTTAAC
1 TAAATACTTAAACCAAATTTAAC
*
43743252 TAAATAACTTGAACCAAATTTAA
1 TAAAT-ACTTAAACCAAATTTAA
43743275 TTCTTTATTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 5 0.26
24 14 0.74
ACGTcount: A:0.50, C:0.13, G:0.02, T:0.35
Consensus pattern (23 bp):
TAAATACTTAAACCAAATTTAAC
Found at i:43743940 original size:24 final size:23
Alignment explanation
Indices: 43743882--43743947 Score: 62
Period size: 24 Copynumber: 2.7 Consensus size: 23
43743872 GCTTTTTTCT
*
43743882 TTTTCTTTCTTCTTTTCATACCATC
1 TTTTCTTT-TTCTTTT-TTACCATC
*
43743907 TTTT-TCTTTTCTTTTTTACTCTTC
1 TTTTCT-TTTTCTTTTTTAC-CATC
*
43743931 TTTTCTTTTTCCTTTTT
1 TTTTCTTTTTCTTTTTT
43743948 GCTTGCCTCG
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
23 3 0.09
24 25 0.71
25 7 0.20
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (23 bp):
TTTTCTTTTTCTTTTTTACCATC
Found at i:43748284 original size:35 final size:35
Alignment explanation
Indices: 43748238--43748307 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
43748228 TCAATACCAT
43748238 CTCAAACATACCATATCTTAGCTACACCATAATCA
1 CTCAAACATACCATATCTTAGCTACACCATAATCA
43748273 CTCAAACATACCATATCTTAGCTACACCATAATCA
1 CTCAAACATACCATATCTTAGCTACACCATAATCA
43748308 ATTCATCACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.40, C:0.31, G:0.03, T:0.26
Consensus pattern (35 bp):
CTCAAACATACCATATCTTAGCTACACCATAATCA
Found at i:43748958 original size:35 final size:35
Alignment explanation
Indices: 43748893--43749009 Score: 135
Period size: 35 Copynumber: 3.3 Consensus size: 35
43748883 AATCCTTCTA
* * * * *
43748893 AAACACACCGAATGCTCACAAAAGCTAGTCCAACCG
1 AAACACACC-AATACTCATAAGAGTTAGTCCAACTG
* *
43748929 AAACACGCCAATACTCATAAGAGTTAGTCCAACTA
1 AAACACACCAATACTCATAAGAGTTAGTCCAACTG
* *
43748964 AAACACACCAGTGCTCATAAGAGTTAGTCCAACTG
1 AAACACACCAATACTCATAAGAGTTAGTCCAACTG
*
43748999 AAACACTCCAA
1 AAACACACCAA
43749010 ACAAAGTGTA
Statistics
Matches: 68, Mismatches: 13, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
35 60 0.88
36 8 0.12
ACGTcount: A:0.42, C:0.29, G:0.13, T:0.16
Consensus pattern (35 bp):
AAACACACCAATACTCATAAGAGTTAGTCCAACTG
Found at i:43751995 original size:21 final size:20
Alignment explanation
Indices: 43751974--43752019 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
43751964 GAGTTTAGGT
* *
43751974 TTTGGGTTTAGGGTTCAAGG
1 TTTGGGTTTAAGGTTAAAGG
43751994 TTTGGGTTTAAGGTTAAAGGG
1 TTTGGGTTTAAGGTTAAA-GG
43752015 TTTGG
1 TTTGG
43752020 AGTCATGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 16 0.70
21 7 0.30
ACGTcount: A:0.17, C:0.02, G:0.39, T:0.41
Consensus pattern (20 bp):
TTTGGGTTTAAGGTTAAAGG
Found at i:43752162 original size:78 final size:78
Alignment explanation
Indices: 43752068--43752222 Score: 267
Period size: 78 Copynumber: 2.0 Consensus size: 78
43752058 TTAGGTTTTA
*
43752068 GGTTTAGGGTTCAAGGTAAAAATTTACCAAAATTATGCGTCAATGACA-AAGAAAAATTGTTGAA
1 GGTTTAGGGTTCAAGGTAAAAATTTACCAAAATTATGCGTAAATGACATAA-AAAAATTGTTGAA
43752132 ATATCATTAAATAG
65 ATATCATTAAATAG
*
43752146 GGTTTAGGGTTCAAGGTAAAAATTTACCAAAATTATGTGTAAATGACATAAAAAAATTGTTGAAA
1 GGTTTAGGGTTCAAGGTAAAAATTTACCAAAATTATGCGTAAATGACATAAAAAAATTGTTGAAA
*
43752211 TGTCATTAAATA
66 TATCATTAAATA
43752223 ATGTGAAAAG
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
78 71 0.97
79 2 0.03
ACGTcount: A:0.44, C:0.08, G:0.17, T:0.31
Consensus pattern (78 bp):
GGTTTAGGGTTCAAGGTAAAAATTTACCAAAATTATGCGTAAATGACATAAAAAAATTGTTGAAA
TATCATTAAATAG
Found at i:43753936 original size:28 final size:26
Alignment explanation
Indices: 43753886--43753998 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
43753876 AGCATGGCTG
* * *
43753886 CCAGAACAAATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
43753912 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
*
43753940 CCAGAACAGATATATGTGGCAAAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
43753967 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
43753995 CCAG
1 CCAG
43753999 GATGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
26 6 0.08
27 37 0.49
28 33 0.43
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:43753969 original size:55 final size:54
Alignment explanation
Indices: 43753886--43753998 Score: 147
Period size: 55 Copynumber: 2.1 Consensus size: 54
43753876 AGCATGGCTG
* *
43753886 CCAGAACAAATAATGTGACAGAGTCACCAGATACAGATAA-TCGTGGCAGAGCCA
1 CCAGAACAAATAATGTGACAAAGCCACCAGAT-CAGATAATTCGTGGCAGAGCCA
* * * *
43753940 CCAGAACAGATATATGTGGCAAAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAAATA-ATGTGACAAAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
43753995 CCAG
1 CCAG
43753999 GATGCTTCCT
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
54 18 0.35
55 33 0.65
ACGTcount: A:0.38, C:0.23, G:0.22, T:0.17
Consensus pattern (54 bp):
CCAGAACAAATAATGTGACAAAGCCACCAGATCAGATAATTCGTGGCAGAGCCA
Found at i:43760858 original size:27 final size:26
Alignment explanation
Indices: 43760823--43760935 Score: 127
Period size: 27 Copynumber: 4.2 Consensus size: 26
43760813 AGCATGGCTG
* *
43760823 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
* *
43760849 CCAGATACAGATAGTCGTGGCAAAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
43760877 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
43760904 CCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATAA--TGTGGCAGAGCCA
43760932 CCAG
1 CCAG
43760936 GACGCTTCCT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.08
27 37 0.50
28 31 0.42
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:43760906 original size:55 final size:54
Alignment explanation
Indices: 43760823--43760935 Score: 156
Period size: 55 Copynumber: 2.1 Consensus size: 54
43760813 AGCATGGCTG
*
43760823 CCAGAACAGATAATGTGACAGAGTCACCAGATACAGAT-AGTCGTGGCAAAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAT-CAGATAAGTCGTGGCAAAGCCA
* * * *
43760877 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGATCAGATAAGTCGTGGCAAAGCCA
43760932 CCAG
1 CCAG
43760936 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
54 17 0.33
55 35 0.67
ACGTcount: A:0.36, C:0.23, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGATCAGATAAGTCGTGGCAAAGCCA
Found at i:43763719 original size:30 final size:30
Alignment explanation
Indices: 43763662--43763719 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
43763652 TTTTCGAGTA
**
43763662 TAGGGGCAAAATGGTCATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTTTACCAAAGTC
*
43763692 TAGGGGCAAAATGGTTATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTTTACCAAAG
43763720 ATGTAAATTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.12, G:0.26, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTTTACCAAAGTC
Found at i:43764129 original size:47 final size:45
Alignment explanation
Indices: 43764060--43764421 Score: 291
Period size: 47 Copynumber: 7.7 Consensus size: 45
43764050 GATTTGTGCT
*
43764060 CCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGAG
* ** *
43764106 CCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCCAGACAAGGG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CATATGAGAG
* ** * *
43764154 CTAGTGTAAGACATGTCTGGGACATGCATCAACCATACTATGATAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGAGAG
* * * * *
43764200 CCAGTGTAAGACCATGTCTGGGACATGGCAACGACACAGAGATGAGTG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CACATATGAGAG
*
43764248 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGATA-GAGGTAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATGA-G-AG
* * * * * * *
43764295 CCAGTATAAGACGTGTCTGGGACACGCATCGGCTA-AGA-GTTGTG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATG-AGAG
* * * *
43764339 CTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATAAGAG
1 CCAGTGTAAGACATGTCTGGGACATGCATCGGC-CAC--ATATGAGAG
43764387 CCAGTGTAAGACTATGTCTGGGACATGGCATCGGC
1 CCAGTGTAAGAC-ATGTCTGGGACAT-GCATCGGC
43764422 ACTATATCCC
Statistics
Matches: 248, Mismatches: 48, Indels: 36
0.75 0.14 0.11
Matches are distributed among these distances:
44 29 0.12
45 8 0.03
46 38 0.15
47 91 0.37
48 57 0.23
49 18 0.07
50 7 0.03
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (45 bp):
CCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATGAGAG
Found at i:43764223 original size:94 final size:93
Alignment explanation
Indices: 43764062--43764422 Score: 385
Period size: 94 Copynumber: 3.9 Consensus size: 93
43764052 TTTGTGCTCC
* ** * *
43764062 AGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAACCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* *
43764127 GACATGGCATCGGCATCCAGACAAGGGCT
66 GACATGGCATCGGCAT-CAGAGAAGTGCT
*
43764156 AGTGTAAGACATGTCTGGGACATGCATCAACCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAACCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
43764221 GACATGGCAACGACA-CAGAGATGAGTGCC
66 GACATGGCATCGGCATCAGAGA--AGTGCT
** * * *
43764250 AGTGTAAGACATGTCTGGGACATGCATCGGCC-T-CGATAGAGGTAGCCAGTATAAGA-CGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAACCATACTAT-GA-G-AGCCAGTGTAAGACCATGTC
* * **
43764312 TGGGACA-CGCATCGGC-TAAGAGTTGTGCT
63 TGGGACATGGCATCGGCATCAGAGAAGTGCT
* * *
43764341 AGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTA-TATAAGAGCCAGTGTAAGACTATGTC
1 AGTGTAAGACATGTCTGGGACATGCATCA--AC-CATACTATGAGAGCCAGTGTAAGACCATGTC
43764405 TGGGACATGGCATCGGCA
63 TGGGACATGGCATCGGCA
43764423 CTATATCCCA
Statistics
Matches: 221, Mismatches: 32, Indels: 27
0.79 0.11 0.10
Matches are distributed among these distances:
91 32 0.14
92 20 0.09
93 26 0.12
94 128 0.58
95 15 0.07
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATCAACCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGGCATCAGAGAAGTGCT
Found at i:43764313 original size:141 final size:140
Alignment explanation
Indices: 43764060--43764422 Score: 364
Period size: 141 Copynumber: 2.6 Consensus size: 140
43764050 GATTTGTGCT
** * **
43764060 CCAGTGTAAGACATGTCTGGGACATGCTTCGGCCACATTATGAGAGCCAGTGTAAGACCATGTCT
1 CCAGTGTAAGACATGTCTGGGACATGCAACGGACACAAGATGAGAGCCAGTGTAAGACCATGTCT
* * *
43764125 GGGACATGGCATCGGCATCCAGACAAGGGCTAGTGTAAGACATGTCTGGGACATGCATCAACCAT
66 GGGACATGGCATCGGCATCCAGACAAGGGCCAGTATAAGACATGTCTGGGACACGCATCAACCAT
43764190 ACTATGATAG
131 ACTATGATAG
*
43764200 CCAGTGTAAGACCATGTCTGGGACATGGCAAC-GACACAGAGATGAGTGCCAGTGTAAGA-CATG
1 CCAGTGTAAGA-CATGTCTGGGACAT-GCAACGGACACA-AGATGAGAGCCAGTGTAAGACCATG
* * *
43764263 TCTGGGACAT-GCATCGGCCT-C-GATAGAGGTAGCCAGTATAAGACGTGTCTGGGACACGCATC
63 TCTGGGACATGGCATCGGCATCCAGACA-AGG--GCCAGTATAAGACATGTCTGGGACACGCATC
** * * *
43764325 GGCTAAGAGT-TG-T-G
125 AAC-CATACTATGATAG
* * * * * * * *
43764339 CTAGTGTAAGACATGTCTGGGACATGCATCAGCACGCGTATATAAGAGCCAGTGTAAGACTATGT
1 CCAGTGTAAGACATGTCTGGGACATGCAAC-GGACAC-AAGATGAGAGCCAGTGTAAGACCATGT
43764404 CTGGGACATGGCATCGGCA
64 CTGGGACATGGCATCGGCA
43764423 CTATATCCCA
Statistics
Matches: 184, Mismatches: 27, Indels: 23
0.79 0.12 0.10
Matches are distributed among these distances:
137 4 0.02
138 17 0.09
139 35 0.19
140 34 0.18
141 71 0.39
142 23 0.12
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.21
Consensus pattern (140 bp):
CCAGTGTAAGACATGTCTGGGACATGCAACGGACACAAGATGAGAGCCAGTGTAAGACCATGTCT
GGGACATGGCATCGGCATCCAGACAAGGGCCAGTATAAGACATGTCTGGGACACGCATCAACCAT
ACTATGATAG
Found at i:43767095 original size:47 final size:47
Alignment explanation
Indices: 43767038--43767401 Score: 566
Period size: 47 Copynumber: 7.6 Consensus size: 47
43767028 TATTTGAATA
43767038 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
43767085 AATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
43767134 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
43767181 AATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
43767230 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
43767277 AATGTGAAAGTGTATATATATGTGATAAGGCCTAACGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
43767326 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
43767373 AATGTGAAAGTGTATATATGTGATAAGGC
1 AATGTGAAAGTGTATATATGTGATAAGGC
43767402 AGTGTATATA
Statistics
Matches: 289, Mismatches: 22, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
47 157 0.54
49 132 0.46
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:43767153 original size:96 final size:96
Alignment explanation
Indices: 43767038--43767401 Score: 687
Period size: 96 Copynumber: 3.8 Consensus size: 96
43767028 TATTTGAATA
* * *
43767038 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
43767103 TATGTGATAAGGCCTAACGGCCGATGTGATG
66 TATGTGATAAGGCCTAACGGCCGATGTGATG
43767134 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
43767199 TATGTGATAAGGCCTAACGGCCGATGTGATG
66 TATGTGATAAGGCCTAACGGCCGATGTGATG
43767230 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
43767295 TATGTGATAAGGCCTAACGGCCGATGTGATG
66 TATGTGATAAGGCCTAACGGCCGATGTGATG
43767326 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
43767389 TATGTGATAAGGC
66 TATGTGATAAGGC
43767402 AGTGTATATA
Statistics
Matches: 265, Mismatches: 3, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
94 17 0.06
96 248 0.94
ACGTcount: A:0.34, C:0.10, G:0.29, T:0.28
Consensus pattern (96 bp):
AATGTGAAAGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAACGGCCGATGTGATG
Found at i:43767407 original size:21 final size:21
Alignment explanation
Indices: 43767381--43767422 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
43767371 TGAATGTGAA
43767381 AGTGTATATATGTGATAAGGC
1 AGTGTATATATGTGATAAGGC
43767402 AGTGTATATATGTGATAAGGC
1 AGTGTATATATGTGATAAGGC
43767423 CTAATGACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (21 bp):
AGTGTATATATGTGATAAGGC
Found at i:43767413 original size:68 final size:68
Alignment explanation
Indices: 43767334--43767468 Score: 234
Period size: 68 Copynumber: 2.0 Consensus size: 68
43767324 TGAATGTGAA
*
43767334 AGTGTACATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTACATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
43767399 GGC
66 GGC
* * *
43767402 AGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTACATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
43767467 GG
66 GG
43767469 TCGAATGGCC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.34, C:0.07, G:0.29, T:0.30
Consensus pattern (68 bp):
AGTGTACATATGTGATAAGGCCGAATGACCAATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGC
Found at i:43767422 original size:115 final size:115
Alignment explanation
Indices: 43767291--43767510 Score: 404
Period size: 115 Copynumber: 1.9 Consensus size: 115
43767281 TGAAAGTGTA
*
43767291 TATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
1 TATATATGTGATAAGGCCTAACGACCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
43767356 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCAGTG
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCAGTG
* * *
43767406 TATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGTC
1 TATATATGTGATAAGGCCTAACGACCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
43767471 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
66 GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGA
43767511 CAGGGCCGAG
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
115 101 1.00
ACGTcount: A:0.34, C:0.08, G:0.29, T:0.30
Consensus pattern (115 bp):
TATATATGTGATAAGGCCTAACGACCGATGTGATGAATGTGAAAGTGTACATATGTGATAAGGCC
GAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCAGTG
Found at i:43767455 original size:47 final size:47
Alignment explanation
Indices: 43767402--43767561 Score: 230
Period size: 47 Copynumber: 3.4 Consensus size: 47
43767392 GTGATAAGGC
* * *
43767402 AGTGTATATATGTGATAAGGCCTAATGACCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
43767449 AGTGTATATATGTGATAAGGTCGAATGGCCAATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
* * * * *
43767496 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
*
43767543 AGTGTATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
43767562 TCCCGAAGGG
Statistics
Matches: 100, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 100 1.00
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAA
Done.