Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 141 of 186
Found at i:46577084 original size:46 final size:46
Alignment explanation
Indices: 46577034--46577206 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
46577024 TGGTTGAGCA
*
46577034 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* * * *
46577080 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A--CG
* * *
46577127 TCAGACCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
46577173 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
46577207 GGGGCGGGTT
Statistics
Matches: 105, Mismatches: 15, Indels: 14
0.78 0.11 0.10
Matches are distributed among these distances:
43 6 0.06
45 3 0.03
46 60 0.57
47 27 0.26
48 3 0.03
50 6 0.06
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:46577190 original size:93 final size:93
Alignment explanation
Indices: 46577031--46577201 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
46577021 GGATGGTTGA
* * *
46577031 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
46577096 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
46577124 GCATCAGACCTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCAAACGCCCGAGCTCGTTGAGT
1 GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
46577189 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
46577202 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCAGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:46584691 original size:46 final size:46
Alignment explanation
Indices: 46584640--46584814 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
46584630 GATGGTTGAG
46584640 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
* * *
46584686 TATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GAT-CTAACTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-AA--A
* *
46584731 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAA
1 --CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
** *
46584779 CGCCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
46584815 GGGGCGGGTT
Statistics
Matches: 109, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 1 0.01
43 5 0.05
45 3 0.03
46 62 0.57
47 30 0.28
48 3 0.03
50 4 0.04
51 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.26, T:0.29
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
Found at i:46584798 original size:93 final size:93
Alignment explanation
Indices: 46584639--46584809 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
46584629 GGATGGTTGA
* *
46584639 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATATCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
46584704 TGAGTCCGAGTTCGTGAGATCTAACTAG
66 TGAGTCCGAGTTCGTGAGATCTAACTAG
* * * *
46584732 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
46584797 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
46584810 ACTTAGGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACACCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATCTAACTAG
Found at i:46585076 original size:19 final size:20
Alignment explanation
Indices: 46585039--46585076 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
46585029 ATAAGGTGGT
46585039 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
46585059 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
46585077 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Found at i:46589663 original size:46 final size:45
Alignment explanation
Indices: 46589607--46589771 Score: 215
Period size: 46 Copynumber: 3.6 Consensus size: 45
46589597 ATATGTGTGT
46589607 TAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAAAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGAC-AAAGC
* *
46589653 TAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACAAGAGC
1 TAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACAA-AGC
* * *
46589699 TAGTGTAAGACATGTCTGGGACATGCATTAGCCA-TGAGATATATAAGC
1 TAGTGTAAGACATGTCTGGGACATGCA-TCGACATTGAG--ACA-AAGC
*
46589747 TAGTGTAAGACTTGTCTGGGACATG
1 TAGTGTAAGACATGTCTGGGACATG
46589772 GCGTCAGCTT
Statistics
Matches: 107, Mismatches: 7, Indels: 8
0.88 0.06 0.07
Matches are distributed among these distances:
45 2 0.02
46 71 0.66
47 4 0.04
48 29 0.27
49 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.25
Consensus pattern (45 bp):
TAGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACAAAGC
Found at i:46595097 original size:42 final size:42
Alignment explanation
Indices: 46595035--46595190 Score: 150
Period size: 42 Copynumber: 3.7 Consensus size: 42
46595025 TAAGATGCCA
* ** *
46595035 ATGCCATGTCCCAAACATGGTCTTACATGGGATCTCACATCG
1 ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
* * * * *
46595077 ATGCCATATCCCAGATATGGTCTTATACGAAATCTCATTTCG
1 ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
* * * * * *
46595119 ATGCCGTGTCCCAGACGTGGTTTTACATGAAATCTCATATCA
1 ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
** *
46595161 ACACCATATCCCAAATATGGTCTTACATGA
1 ATGCCATATCCCAAACATGGTCTTACATGA
46595191 CAACACATAC
Statistics
Matches: 88, Mismatches: 26, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
42 88 1.00
ACGTcount: A:0.29, C:0.26, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATATCCCAAACATGGTCTTACATGAAATCTCATATCG
Found at i:46596087 original size:5 final size:5
Alignment explanation
Indices: 46596077--46596104 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
46596067 AGATGACTAT
46596077 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTT
46596105 AATCTATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:46601384 original size:19 final size:22
Alignment explanation
Indices: 46601333--46601374 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
46601323 TCGATATCAG
46601333 ACTAA-AGTATCGATACTTTAT
1 ACTAACAGTATCGATACTTTAT
46601354 ACTAACAGTATCGATACTTTA
1 ACTAACAGTATCGATACTTTA
46601375 CAAGAGTATC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.38, C:0.17, G:0.10, T:0.36
Consensus pattern (22 bp):
ACTAACAGTATCGATACTTTAT
Found at i:46605494 original size:24 final size:24
Alignment explanation
Indices: 46605467--46605550 Score: 64
Period size: 24 Copynumber: 3.3 Consensus size: 24
46605457 TATAGGTCGG
46605467 AAATTTAACAAGTTAATCATAAAT
1 AAATTTAACAAGTTAATCATAAAT
* * *
46605491 AAATTTAATTATA-TTAAATAATTATTATT
1 AAATTTAA-CA-AGTT-AATCA-TA--AAT
*
46605520 TAA-TTAACAAGTTAATCATAAAT
1 AAATTTAACAAGTTAATCATAAAT
46605543 AAATTTAA
1 AAATTTAA
46605551 TTATATTAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 16
0.65 0.12 0.24
Matches are distributed among these distances:
23 4 0.09
24 12 0.27
25 5 0.11
26 10 0.23
27 5 0.11
28 4 0.09
29 4 0.09
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (24 bp):
AAATTTAACAAGTTAATCATAAAT
Found at i:46605510 original size:19 final size:19
Alignment explanation
Indices: 46605486--46605561 Score: 58
Period size: 19 Copynumber: 4.3 Consensus size: 19
46605476 AAGTTAATCA
46605486 TAAATAAATTTAATTATAT
1 TAAATAAATTTAATTATAT
46605505 TAAAT-AA-TT-ATTAT-T
1 TAAATAAATTTAATTATAT
* * *
46605520 TAATTAACAAGTTAA-T-CA-
1 TAAAT-A-AATTTAATTATAT
46605538 TAAATAAATTTAATTATAT
1 TAAATAAATTTAATTATAT
46605557 TAAAT
1 TAAAT
46605562 TATTATTATT
Statistics
Matches: 43, Mismatches: 5, Indels: 18
0.65 0.08 0.27
Matches are distributed among these distances:
15 5 0.12
16 11 0.26
17 4 0.09
18 9 0.21
19 13 0.30
20 1 0.02
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.45
Consensus pattern (19 bp):
TAAATAAATTTAATTATAT
Found at i:46605528 original size:52 final size:52
Alignment explanation
Indices: 46605471--46605574 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
46605461 GGTCGGAAAT
46605471 TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATAATTATTATTTAA
1 TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATAATTATTATTTAA
*
46605523 TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATTATTATTATTTAA
1 TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATAATTATTATTTAA
46605575 CTATCTTATA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.45
Consensus pattern (52 bp):
TTAACAAGTTAATCATAAATAAATTTAATTATATTAAATAATTATTATTTAA
Found at i:46605572 original size:24 final size:24
Alignment explanation
Indices: 46605493--46605591 Score: 67
Period size: 24 Copynumber: 4.0 Consensus size: 24
46605483 TCATAAATAA
*
46605493 ATTTAATTATATTAAATAATTATT
1 ATTTAATTATATTAAATTATTATT
* * * *
46605517 ATTTAATTAACAAGTT-AATCATAAATAA
1 ATTTAATT-A-TA-TTAAATTAT-TAT-T
46605545 ATTTAATTATATTAAATTATTATT
1 ATTTAATTATATTAAATTATTATT
* * *
46605569 ATTTAACTATCTTATATT-TTATT
1 ATTTAATTATATTAAATTATTATT
46605592 TTTTGCGAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
23 5 0.09
24 23 0.40
25 5 0.09
26 12 0.21
27 5 0.09
28 8 0.14
ACGTcount: A:0.43, C:0.04, G:0.01, T:0.52
Consensus pattern (24 bp):
ATTTAATTATATTAAATTATTATT
Found at i:46608575 original size:13 final size:13
Alignment explanation
Indices: 46608557--46608584 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
46608547 AGAGATGAGA
46608557 TGTTTAGTTCACT
1 TGTTTAGTTCACT
46608570 TGTTTAGTTCACT
1 TGTTTAGTTCACT
46608583 TG
1 TG
46608585 AAAATATGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.54
Consensus pattern (13 bp):
TGTTTAGTTCACT
Found at i:46615307 original size:40 final size:40
Alignment explanation
Indices: 46615263--46615354 Score: 175
Period size: 40 Copynumber: 2.3 Consensus size: 40
46615253 AATGAACAAC
46615263 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
1 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
*
46615303 TTTTGTGAAGTTGTTTTCATGGAAACACCTAAGAGGACCA
1 TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
46615343 TTTTGTGAAGTT
1 TTTTGTGAAGTT
46615355 TATAAAATAG
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (40 bp):
TTTTGTGAAGTTGTTTTCATGAAAACACCTAAGAGGACCA
Found at i:46615929 original size:48 final size:48
Alignment explanation
Indices: 46615858--46616175 Score: 267
Period size: 48 Copynumber: 6.6 Consensus size: 48
46615848 TATGTGTGCT
* *
46615858 AGTGTAAGACCATGTATGGGACATGGCATCAGCCACATTATAAGAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCC
* * * *
46615906 AGTGTAAGACCATGTTTGAGACATGGCATC-G--GCATTGATAGGTGAGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATT-ATA--AGAGCC
* * **** ** * *
46615954 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGA-TATGTGTGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCAG-CCACATTATAAGAGCC
*
46616002 AGTGTAAGACCATGTCTGAGACATGACATCAGCCACATTATAAGAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCC
* * *
46616050 AGTGTAAAACCATGTCTGAGACATGGCATCAG---CATTGAGACGAGAGCT
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATT-ATA--AGAGCC
* * * **
46616098 AGTGTAATACCATGTCTGGGACATGGCATCAGCCTCGA-TATGTGAGCC
1 AGTGTAAGACCATGTCTGAGACATGGCATCAGCCAC-ATTATAAGAGCC
46616146 AGTGTAAGACCATGTCT-AGGACATGGCATC
1 AGTGTAAGACCATGTCTGA-GACATGGCATC
46616176 GGTAATTTAC
Statistics
Matches: 220, Mismatches: 34, Indels: 32
0.77 0.12 0.11
Matches are distributed among these distances:
45 8 0.04
46 5 0.02
47 2 0.01
48 196 0.89
49 1 0.00
50 3 0.01
51 3 0.01
52 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCC
Found at i:46616009 original size:96 final size:95
Alignment explanation
Indices: 46615858--46616179 Score: 312
Period size: 96 Copynumber: 3.4 Consensus size: 95
46615848 TATGTGTGCT
* ** * *
46615858 AGTGTAAGACCATGTATGGGACATGGCATCAGCCACATT-ATA--AGAGCCAGTGTAAGACCATG
1 AGTGTAAGACCATGTCTGGGACATGGCATC-G--GTATTGAGACGAGAGCTAGTGTAAGACCATG
* *
46615920 TTTGAGACATGGCATCGGCATTGATAGGTGAGCT
63 TCTGAGACATGGCATCGGCATTGATA-GTGAGCC
* * * * *
46615954 AGTGTAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGTGTGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACCATGTCT
* * *
46616019 GAGACATGACATCAGCCACATT-ATA-AGAGCC
66 GAGACATGGCATC-G--GCATTGATAGTGAGCC
* * * * *
46616050 AGTGTAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAATACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACCATGTCT
* * * *
46616115 GGGACATGGCATCAGCCTCGATATGTGAGCC
66 GAGACATGGCATCGGCATTGATA-GTGAGCC
*
46616146 AGTGTAAGACCATGTCTAGGACATGGCATCGGTA
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGTA
46616180 ATTTACCCTC
Statistics
Matches: 183, Mismatches: 34, Indels: 18
0.78 0.14 0.08
Matches are distributed among these distances:
93 4 0.02
94 6 0.03
95 1 0.01
96 164 0.90
97 1 0.01
98 3 0.02
99 4 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (95 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGTATTGAGACGAGAGCTAGTGTAAGACCATGTCT
GAGACATGGCATCGGCATTGATAGTGAGCC
Found at i:46616110 original size:144 final size:144
Alignment explanation
Indices: 46615845--46616175 Score: 502
Period size: 144 Copynumber: 2.3 Consensus size: 144
46615835 GACATTTGGG
* *
46615845 TGATATGTGTGCTAGTGTAAGACCATGTATGGGACATGGCATCAGCCACATTATAAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCCAGTG
* * * * * *
46615910 TAAGACCATGTTTGAGACATGGCATCGGCATTGATAGGTGAGCTAGTGTAAGACCATGTCTGGGA
66 TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
* **
46615975 CATGGCATCGGTGT
131 CATGGCATCAGCCT
*
46615989 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGACATCAGCCACATTATAAGAGCCAGTG
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCCAGTG
*
46616054 TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAATACCATGTCTGGGA
66 TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
46616119 CATGGCATCAGCCT
131 CATGGCATCAGCCT
* * *
46616133 CGATATGTGAGCCAGTGTAAGACCATGTCT-AGGACATGGCATC
1 TGATATGTGTGCTAGTGTAAGACCATGTCTGA-GACATGGCATC
46616176 GGTAATTTAC
Statistics
Matches: 169, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
143 1 0.01
144 168 0.99
ACGTcount: A:0.29, C:0.19, G:0.27, T:0.25
Consensus pattern (144 bp):
TGATATGTGTGCTAGTGTAAGACCATGTCTGAGACATGGCATCAGCCACATTATAAGAGCCAGTG
TAAAACCATGTCTGAGACATGGCATCAGCATTGAGACGAGAGCTAGTGTAAGACCATGTCTGGGA
CATGGCATCAGCCT
Found at i:46625591 original size:9 final size:11
Alignment explanation
Indices: 46625558--46625587 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
46625548 AATGTCACGA
*
46625558 TATATATAATT
1 TATATATAAGT
46625569 TATATATAAGT
1 TATATATAAGT
46625580 TATATATA
1 TATATATA
46625588 TTATGTTAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
TATATATAAGT
Found at i:46628395 original size:98 final size:95
Alignment explanation
Indices: 46628202--46628516 Score: 300
Period size: 94 Copynumber: 3.3 Consensus size: 95
46628192 ACGCCGACGC
* * * * *
46628202 CATGTCCCAGACATGGTCTTACACTGGCTAGTACATC-AAAT-TCGATGCCATGTCCCAGATAGG
1 CATGTCCCAGGCAT-GTCTTACACTAGCT-CT-CATCTTAATGTCGATGCCATGTCCCAGACAGG
*
46628265 TCTTACACT-GACTT-TCATATATCAAGGCCGATG
63 TCTTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * ** * *
46628298 CCATGTCCCAGGCAGGTCTTATACTGGCTCTCATCTATCGGTGTCGATGCCACGTCCCAGCCAGG
1 -CATGTCCCAGGCATGTCTTACACTAGCTCTCATCT-T-AATGTCGATGCCATGTCCCAGACAGG
* *
46628363 TCTTACACTAGCTTGTATATCTCGAGGTCGATG
63 TCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * * * * *
46628396 CATG-CCCTGGACATGTCTTACACTAGCTCTCGTCTTAATGCCAAT-ACATGTCCCAGACATGTC
1 CATGTCCCAGG-CATGTCTTACACTAGCTCTCATCTTAATGTCGATGCCATGTCCCAGACAGGTC
*
46628459 TTACACTAGCTAGTATATCTCAAGGCCGATG
65 TTACACTAGCTTGTATATCTCAAGGCCGATG
*
46628490 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGGCATGTCTTACACTAGC
46628517 ACACATATCA
Statistics
Matches: 179, Mismatches: 31, Indels: 19
0.78 0.14 0.08
Matches are distributed among these distances:
94 66 0.37
95 10 0.06
96 19 0.11
97 37 0.21
98 45 0.25
99 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (95 bp):
CATGTCCCAGGCATGTCTTACACTAGCTCTCATCTTAATGTCGATGCCATGTCCCAGACAGGTCT
TACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:46628417 original size:48 final size:48
Alignment explanation
Indices: 46628202--46628516 Score: 198
Period size: 49 Copynumber: 6.6 Consensus size: 48
46628192 ACGCCGACGC
* * * ***
46628202 CATGTCCCAGACATGGTCTTACACTGGCTAGTACA--TCAAATTCGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * *
46628249 CCATGTCCCAGATAGGTCTTACACT-GACTT-TCATATATCAAGGCCGATG
1 -CATGTCCCAGACATGTCTTACACTAG-CTTGT-ATATCTCAAGGCCGATG
* * * * * * * * *
46628298 CCATGTCCCAGGCAGGTCTTATACTGGCTCT-CATCTATC-GGTGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCT-TGTATATCTCAAG-GCCGATG
* * * * *
46628347 CCACGTCCCAGCCAGGTCTTACACTAGCTTGTATATCTCGAGGTCGATG
1 -CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
* * ** * * * *
46628396 CATG-CCCTGGACATGTCTTACACTAGC-TCT-CGTCTTAATGCCAATA
1 CATGTCCC-AGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
*
46628442 CATGTCCCAGACATGTCTTACACTAGCTAGTATATCTCAAGGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
46628490 CATGTCCCAGACATGTCTTACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
46628517 ACACATATCA
Statistics
Matches: 210, Mismatches: 44, Indels: 26
0.75 0.16 0.09
Matches are distributed among these distances:
46 32 0.15
47 23 0.11
48 70 0.33
49 82 0.39
50 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCAAGGCCGATG
Found at i:46628464 original size:46 final size:48
Alignment explanation
Indices: 46628351--46628516 Score: 149
Period size: 48 Copynumber: 3.5 Consensus size: 48
46628341 TCGATGCCAC
* * ** * * * * *
46628351 GTCCCAGCCAGGTCTTACACTAGCTTGTATATCTCGAGGTCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
* * * *
46628399 G-CCCTGGACATGTCTTACACTAGCT-CT-CGTCTTAATGCCAATACAT
1 GTCCC-AGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
* * * *
46628445 GTCCCAGACATGTCTTACACTAGCTAGTATATCTCAAGGCCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
46628493 GTCCCAGACATGTCTTACACTAGC
1 GTCCCAGACATGTCTTACACTAGC
46628517 ACACATATCA
Statistics
Matches: 94, Mismatches: 20, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
46 31 0.33
47 8 0.09
48 55 0.59
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GTCCCAGACATGTCTTACACTAGCTACTACATCTCAAGGCCAATACAT
Found at i:46631831 original size:45 final size:45
Alignment explanation
Indices: 46631781--46631896 Score: 126
Period size: 45 Copynumber: 2.6 Consensus size: 45
46631771 TAGGAATTTT
* ** *
46631781 GAAATCCGAGCTCATTGAGTTGGTCTGAGTTTATGATATATGTGA
1 GAAATCCGAGCTCGTTGAGTTGGTCCAAGTTTATGATATAAGTGA
* * * * *
46631826 GAAATCCAAACTTGTTAAGTTGGTCCAAGTTTGTGATATAAGTGA
1 GAAATCCGAGCTCGTTGAGTTGGTCCAAGTTTATGATATAAGTGA
*
46631871 -AGCATCCGAGCTCGTTGAGTTGGTCC
1 GA-AATCCGAGCTCGTTGAGTTGGTCC
46631897 GAGCTCGTTG
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
44 1 0.02
45 55 0.98
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.33
Consensus pattern (45 bp):
GAAATCCGAGCTCGTTGAGTTGGTCCAAGTTTATGATATAAGTGA
Found at i:46631899 original size:19 final size:19
Alignment explanation
Indices: 46631875--46631915 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
46631865 AAGTGAAGCA
46631875 TCCGAGCTCGTTGAGTTGG
1 TCCGAGCTCGTTGAGTTGG
46631894 TCCGAGCTCGTTGAGTTGG
1 TCCGAGCTCGTTGAGTTGG
46631913 TCC
1 TCC
46631916 AAGTTCATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.10, C:0.24, G:0.34, T:0.32
Consensus pattern (19 bp):
TCCGAGCTCGTTGAGTTGG
Found at i:46634885 original size:48 final size:48
Alignment explanation
Indices: 46634833--46635065 Score: 371
Period size: 48 Copynumber: 4.9 Consensus size: 48
46634823 ACATCTCCTA
*
46634833 CATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
46634881 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCAT-T
* * * * *
46634930 -ATATTTCACATTAGCAATTCAGCTTTACAACATATACATATCTCATA
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
* *
46634977 CATATTTCACA-TTGCCATTCGGCTTTACCACACATACATATCTCATT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
46635024 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 CATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
46635066 ATAATTTATC
Statistics
Matches: 168, Mismatches: 14, Indels: 6
0.89 0.07 0.03
Matches are distributed among these distances:
47 41 0.24
48 126 0.75
49 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.06, T:0.35
Consensus pattern (48 bp):
CATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATT
Found at i:46635050 original size:95 final size:97
Alignment explanation
Indices: 46634825--46635065 Score: 382
Period size: 95 Copynumber: 2.5 Consensus size: 97
46634815 ATATACACAC
* *
46634825 ATCTCCTA-CATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATTCATATTTC
1 ATCTCATATCATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTC
*
46634889 ACACTAGCCATTCGGCTTTACCACATATACAT
66 ACACTAGCCATTCGGCTTTACCACACATACAT
* * *
46634921 ATCTCATAT-ATATTTCACATTAGCAATTCAGCTTTACAACATATACATATCTCATACATATTTC
1 ATCTCATATCATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTC
*
46634985 ACA-TTGCCATTCGGCTTTACCACACATACAT
66 ACACTAGCCATTCGGCTTTACCACACATACAT
*
46635016 ATCTCAT-TCATATTTCACACTAGCCATTCGGCTTTACCACATATACATAT
1 ATCTCATATCATATTTCACACTAGCCATTCAGCTTTACCACATATACATAT
46635066 ATAATTTATC
Statistics
Matches: 132, Mismatches: 11, Indels: 5
0.89 0.07 0.03
Matches are distributed among these distances:
94 1 0.01
95 70 0.53
96 61 0.46
ACGTcount: A:0.32, C:0.28, G:0.05, T:0.35
Consensus pattern (97 bp):
ATCTCATATCATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTC
ACACTAGCCATTCGGCTTTACCACACATACAT
Found at i:46645785 original size:17 final size:17
Alignment explanation
Indices: 46645763--46645801 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
46645753 GTGTCATTGA
46645763 GTTAGTATTAAAGTTTC
1 GTTAGTATTAAAGTTTC
46645780 GTTAGTATTAAAGTTTC
1 GTTAGTATTAAAGTTTC
46645797 GTTAG
1 GTTAG
46645802 GAAATTTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.21, T:0.46
Consensus pattern (17 bp):
GTTAGTATTAAAGTTTC
Found at i:46648051 original size:37 final size:37
Alignment explanation
Indices: 46647992--46648090 Score: 126
Period size: 37 Copynumber: 2.7 Consensus size: 37
46647982 ACTGGTATAT
* * * *
46647992 ATATATTGAAAGGTGTCTTGGAAATGATATTTAATTG
1 ATATATTGAAAAGTGACATGGAAATGATATTTAATTA
* *
46648029 ATATATTGAAATGTGACATGGAAATGATATTTATTTA
1 ATATATTGAAAAGTGACATGGAAATGATATTTAATTA
* *
46648066 ATATATTAAAAAGTGACATGTAAAT
1 ATATATTGAAAAGTGACATGGAAAT
46648091 ATGTGATTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 54 1.00
ACGTcount: A:0.41, C:0.03, G:0.17, T:0.38
Consensus pattern (37 bp):
ATATATTGAAAAGTGACATGGAAATGATATTTAATTA
Found at i:46652120 original size:39 final size:39
Alignment explanation
Indices: 46652003--46652914 Score: 1745
Period size: 39 Copynumber: 23.3 Consensus size: 39
46651993 GCTCCTCGTT
* *
46652003 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTATCTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCA
* * *
46652043 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
46652083 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652122 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652161 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652200 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652239 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652278 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652317 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652356 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652395 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652434 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652473 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652512 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652551 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652590 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652629 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652668 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652707 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652746 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652785 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652824 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652863 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
46652902 CAAATGCCTTCGG
1 CAAATGCCTTCGG
46652915 ATCTTAGTCC
Statistics
Matches: 865, Mismatches: 6, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
39 815 0.94
40 48 0.06
41 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:46657469 original size:19 final size:19
Alignment explanation
Indices: 46657445--46657485 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
46657435 TGTCTATATA
46657445 TATATGAACATATGATAAG
1 TATATGAACATATGATAAG
46657464 TATATGAACATATGATAAG
1 TATATGAACATATGATAAG
46657483 TAT
1 TAT
46657486 GGTGAGGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.46, C:0.05, G:0.15, T:0.34
Consensus pattern (19 bp):
TATATGAACATATGATAAG
Found at i:46665893 original size:27 final size:27
Alignment explanation
Indices: 46665863--46665916 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
46665853 CGACTGGTGT
46665863 GTTGCAGCACAAGGGGACTTATTCCCC
1 GTTGCAGCACAAGGGGACTTATTCCCC
46665890 GTTGCAGCACAAGGGGACTTATTCCCC
1 GTTGCAGCACAAGGGGACTTATTCCCC
46665917 TTTGAATGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (27 bp):
GTTGCAGCACAAGGGGACTTATTCCCC
Found at i:46675205 original size:13 final size:13
Alignment explanation
Indices: 46675187--46675212 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46675177 CCCGGATAAT
46675187 TGAATTATTGAAG
1 TGAATTATTGAAG
46675200 TGAATTATTGAAG
1 TGAATTATTGAAG
46675213 ATGTGAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (13 bp):
TGAATTATTGAAG
Found at i:46679610 original size:20 final size:20
Alignment explanation
Indices: 46679585--46679625 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
46679575 CTTTATATAT
46679585 TTTTTAGAATTTTTTTAAAA
1 TTTTTAGAATTTTTTTAAAA
* *
46679605 TTTTTATATTTTTTTTAAAA
1 TTTTTAGAATTTTTTTAAAA
46679625 T
1 T
46679626 ATAAATTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTTAGAATTTTTTTAAAA
Found at i:46679645 original size:22 final size:20
Alignment explanation
Indices: 46679617--46679662 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
46679607 TTTATATTTT
46679617 TTTTAAAATATAAATTTTGGAA
1 TTTTAAAA-AT-AATTTTGGAA
* *
46679639 TTTTAAAAATTATTTTGTAA
1 TTTTAAAAATAATTTTGGAA
46679659 TTTT
1 TTTT
46679663 TGTTGAGAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 12 0.55
21 2 0.09
22 8 0.36
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (20 bp):
TTTTAAAAATAATTTTGGAA
Found at i:46680150 original size:19 final size:19
Alignment explanation
Indices: 46680123--46680159 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
46680113 GTTTATTTAT
*
46680123 GTCATTCTTATTAAAAATG
1 GTCACTCTTATTAAAAATG
*
46680142 GTCACTCTTCTTAAAAAT
1 GTCACTCTTATTAAAAAT
46680160 TCTAATAGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (19 bp):
GTCACTCTTATTAAAAATG
Found at i:46680290 original size:12 final size:12
Alignment explanation
Indices: 46680273--46680297 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
46680263 GGATTAAAAT
46680273 ATAATTTGCCCG
1 ATAATTTGCCCG
46680285 ATAATTTGCCCG
1 ATAATTTGCCCG
46680297 A
1 A
46680298 ATATTAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (12 bp):
ATAATTTGCCCG
Found at i:46680656 original size:38 final size:38
Alignment explanation
Indices: 46680605--46680718 Score: 228
Period size: 38 Copynumber: 3.0 Consensus size: 38
46680595 TATTATCCTC
46680605 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
1 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
46680643 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
1 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
46680681 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
1 AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
46680719 CAATCGGATT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 76 1.00
ACGTcount: A:0.55, C:0.24, G:0.05, T:0.16
Consensus pattern (38 bp):
AATAACTCCATTAAAGAAGAAACAACTCAAAACACCAT
Found at i:46684751 original size:15 final size:15
Alignment explanation
Indices: 46684731--46684761 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
46684721 AAGGGTACAG
46684731 AGAGGAAAAAAGGAA
1 AGAGGAAAAAAGGAA
46684746 AGAGGAAAAAAGGAA
1 AGAGGAAAAAAGGAA
46684761 A
1 A
46684762 TTTTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (15 bp):
AGAGGAAAAAAGGAA
Found at i:46686457 original size:21 final size:21
Alignment explanation
Indices: 46686431--46686478 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
46686421 ATTGGGTGGA
46686431 TCAGCTCTCAAAAGCTTCTGT
1 TCAGCTCTCAAAAGCTTCTGT
* *
46686452 TCAGCTCTTATAAGCTTCTGT
1 TCAGCTCTCAAAAGCTTCTGT
*
46686473 TTAGCT
1 TCAGCT
46686479 TTCGAGCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.25, G:0.15, T:0.40
Consensus pattern (21 bp):
TCAGCTCTCAAAAGCTTCTGT
Found at i:46687421 original size:25 final size:25
Alignment explanation
Indices: 46687387--46687436 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
46687377 TGCATACAAG
46687387 TTAGGCTATTACATGGCCTGACATA
1 TTAGGCTATTACATGGCCTGACATA
*
46687412 TTAGGCTATTACATGGCCTGGCATA
1 TTAGGCTATTACATGGCCTGACATA
46687437 CTGGCGTGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (25 bp):
TTAGGCTATTACATGGCCTGACATA
Found at i:46689624 original size:25 final size:22
Alignment explanation
Indices: 46689581--46689626 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
46689571 AGGTTAAATT
*
46689581 AGTAAATTAATAAATAAGTTAA
1 AGTAAATTAATAAAAAAGTTAA
46689603 AGTAAATTGACATAAACAAAGTTA
1 AGTAAATT-A-ATAAA-AAAGTTA
46689627 TCATTATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 8 0.40
23 1 0.05
24 5 0.25
25 6 0.30
ACGTcount: A:0.57, C:0.04, G:0.11, T:0.28
Consensus pattern (22 bp):
AGTAAATTAATAAAAAAGTTAA
Found at i:46690116 original size:8 final size:8
Alignment explanation
Indices: 46690102--46690150 Score: 71
Period size: 8 Copynumber: 6.1 Consensus size: 8
46690092 AATATTAGGG
46690102 GTAAAATT
1 GTAAAATT
*
46690110 ATAAAATT
1 GTAAAATT
46690118 GTAAAATT
1 GTAAAATT
46690126 GTAAAATT
1 GTAAAATT
*
46690134 GTAAAACT
1 GTAAAATT
*
46690142 ATAAAATT
1 GTAAAATT
46690150 G
1 G
46690151 CCATAATATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 35 1.00
ACGTcount: A:0.53, C:0.02, G:0.10, T:0.35
Consensus pattern (8 bp):
GTAAAATT
Found at i:46690123 original size:16 final size:16
Alignment explanation
Indices: 46690102--46690150 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
46690092 AATATTAGGG
46690102 GTAAAATTATAAAATT
1 GTAAAATTATAAAATT
*
46690118 GTAAAATTGTAAAATT
1 GTAAAATTATAAAATT
*
46690134 GTAAAACTATAAAATT
1 GTAAAATTATAAAATT
46690150 G
1 G
46690151 CCATAATATA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.53, C:0.02, G:0.10, T:0.35
Consensus pattern (16 bp):
GTAAAATTATAAAATT
Found at i:46693236 original size:48 final size:48
Alignment explanation
Indices: 46693004--46693236 Score: 234
Period size: 48 Copynumber: 4.9 Consensus size: 48
46692994 TTTGGGTGAT
* * * ** *
46693004 ATGTGTGCCAGTGTAAGACCATGTCTGGGATATGGCATCGACATTGAT
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAC
* * * * *
46693052 ATGTGTGCTAGAGAAAGACCATGTCTGGGACATGGCATTGGCCA-CAAC
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG-CATCAAC
* * * * *
46693100 ATGAGAGCCAGTGTAAAACCATGTCTGGGATATGGCATCGGCATTAAG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAC
* * * * *
46693148 ACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAC
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAC
* * *
46693196 ATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGAATCGG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
46693237 TAATTCACCC
Statistics
Matches: 150, Mismatches: 33, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
47 2 0.01
48 146 0.97
49 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (48 bp):
ATGTGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCAAC
Found at i:46693236 original size:96 final size:96
Alignment explanation
Indices: 46693004--46693219 Score: 306
Period size: 96 Copynumber: 2.2 Consensus size: 96
46692994 TTTGGGTGAT
* * * * * * *
46693004 ATGTGTGCCAGTGTAAGACCATGTCTGGGATATGGCATCGACATTGATATGTGTGCTAGAGAAAG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTAAGACGAGAGCTAGAGAAAG
*
46693069 ACCATGTCTGGGACATGGCATTGGCCACAAC
66 ACCATGTCTGGGACATGGCATCGGCCACAAC
* * * *
46693100 ATGAGAGCCAGTGTAAAACCATGTCTGGGATATGGCATCGGCATTAAGACGAGAGCTAGTGTAAG
1 ATGTGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTAAGACGAGAGCTAGAGAAAG
* *
46693165 ACCATGTCTGGGACATGGCATCGGCCTCGAC
66 ACCATGTCTGGGACATGGCATCGGCCACAAC
46693196 ATGTGAGCCAGTGTAAGACCATGT
1 ATGTGAGCCAGTGTAAGACCATGT
46693220 TTGGAACATG
Statistics
Matches: 104, Mismatches: 16, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
96 104 1.00
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (96 bp):
ATGTGAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGGCATTAAGACGAGAGCTAGAGAAAG
ACCATGTCTGGGACATGGCATCGGCCACAAC
Found at i:46716636 original size:43 final size:43
Alignment explanation
Indices: 46716554--46716655 Score: 125
Period size: 43 Copynumber: 2.4 Consensus size: 43
46716544 TGGGATTCAG
*
46716554 CCCAGACGAGTAATCCATTAATCTCAGTATGGAATGGATTTAA
1 CCCAGACGAGTAATCCATTAATCTCAGTATAGAATGGATTTAA
* * * * *
46716597 CCCAGATGGGTAATCCATTGATTTCAGTATAAGAA-GGATTTAT
1 CCCAGACGAGTAATCCATTAATCTCAGTAT-AGAATGGATTTAA
*
46716640 CCCGGACGAGTAATCC
1 CCCAGACGAGTAATCC
46716656 CGAGTTGAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
43 46 0.94
44 3 0.06
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (43 bp):
CCCAGACGAGTAATCCATTAATCTCAGTATAGAATGGATTTAA
Found at i:46722843 original size:21 final size:21
Alignment explanation
Indices: 46722818--46722864 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
46722808 GGACACGGTC
*
46722818 TGGCCATACGGGCGTGTGGTA
1 TGGCCATACGGGCGTGTAGTA
46722839 TGGCCATACGGGCGTGTAGTA
1 TGGCCATACGGGCGTGTAGTA
*
46722860 CGGCC
1 TGGCC
46722865 GTGTGACCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.15, C:0.23, G:0.40, T:0.21
Consensus pattern (21 bp):
TGGCCATACGGGCGTGTAGTA
Found at i:46726584 original size:16 final size:16
Alignment explanation
Indices: 46726563--46726598 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
46726553 ATTTACAAAG
46726563 CTTTAAAGCTTACCCC
1 CTTTAAAGCTTACCCC
*
46726579 CTTTAAAGCTTACCCT
1 CTTTAAAGCTTACCCC
46726595 CTTT
1 CTTT
46726599 CCTTTCTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.33, G:0.06, T:0.39
Consensus pattern (16 bp):
CTTTAAAGCTTACCCC
Found at i:46726664 original size:42 final size:42
Alignment explanation
Indices: 46726604--46726685 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
46726594 TCTTTCCTTT
* ** ** *
46726604 CTTTTTTTATAGTGTCGCCAAGTTAGCTCTGGGATCGGAATC
1 CTTTTCTTATAGCATCGCCAAACTAGCTCAGGGATCGGAATC
*
46726646 CTTTTCTTATAGCATCGCCAAACTAGCTCAGGGATTGGAA
1 CTTTTCTTATAGCATCGCCAAACTAGCTCAGGGATCGGAA
46726686 GACGTCGGAG
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (42 bp):
CTTTTCTTATAGCATCGCCAAACTAGCTCAGGGATCGGAATC
Found at i:46728175 original size:20 final size:20
Alignment explanation
Indices: 46728150--46728195 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
46728140 ATTGTGTCTT
46728150 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
46728170 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
46728189 GCCCATA
1 GCCCATA
46728196 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:46728204 original size:19 final size:20
Alignment explanation
Indices: 46728162--46728205 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
46728152 CCATATTAAC
** *
46728162 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
46728182 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
46728201 ACAGT
1 ACAGT
46728206 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:46733169 original size:53 final size:53
Alignment explanation
Indices: 46733003--46733198 Score: 212
Period size: 53 Copynumber: 3.6 Consensus size: 53
46732993 AAGGTACCAA
* * * *
46733003 GTAAGACCATGTCAAGGCATGGCATTGGTAAGTTTTATAAGGCAAGGAAATCAT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAG-TTCATAAGGCAAGGATATCAT
* * * * * * **
46733057 GTAAGACCATGTCAAGACATCGCATTGATAAACTACGATAAGGCAAAGATCCCAT
1 GTAAGACCATGTCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAGGATATCAT
* * * *
46733112 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATATCAC
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAGGATATCAT
*
46733165 GTAAGACCATATCAAGACATGGCAATGGTAAGTT
1 GTAAGACCATGTCAAGACATGGCAATGGTAAGTT
46733199 TAAAAAGGAA
Statistics
Matches: 114, Mismatches: 26, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
53 44 0.39
54 30 0.26
55 40 0.35
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
GTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAAGGCAAGGATATCAT
Found at i:46738847 original size:28 final size:29
Alignment explanation
Indices: 46738781--46738847 Score: 118
Period size: 29 Copynumber: 2.3 Consensus size: 29
46738771 TGTGCAAGTT
*
46738781 TAAGTGTGCGAGTTTGATTATGTAAGCAC
1 TAAGTGTGCGAGTTTGATTATATAAGCAC
46738810 TAAGTGTGCGAGTTTGATTATATAA-CAC
1 TAAGTGTGCGAGTTTGATTATATAAGCAC
46738838 TAAGTGTGCG
1 TAAGTGTGCG
46738848 GACTTACTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
28 13 0.35
29 24 0.65
ACGTcount: A:0.28, C:0.10, G:0.27, T:0.34
Consensus pattern (29 bp):
TAAGTGTGCGAGTTTGATTATATAAGCAC
Found at i:46753914 original size:6 final size:6
Alignment explanation
Indices: 46753896--46753977 Score: 53
Period size: 6 Copynumber: 13.3 Consensus size: 6
46753886 AAGAAACATT
* * *
46753896 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
46753945 ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
46753978 TAATATCAGG
Statistics
Matches: 58, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
5 4 0.07
6 46 0.79
7 6 0.10
8 2 0.03
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:46753938 original size:25 final size:25
Alignment explanation
Indices: 46753910--46753979 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
46753900 GAACTAGAAT
* *
46753910 CAGAATCAGAATCAAAATTAGGTGA
1 CAGAATCAGAATCAGAATTAGGTAA
* *
46753935 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATTAGGTAA
*
46753960 CAGAATCAAAATCAGAATTA
1 CAGAATCAGAATCAGAATTA
46753980 ATATCAGGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.49, C:0.14, G:0.17, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATTAGGTAA
Found at i:46753973 original size:31 final size:32
Alignment explanation
Indices: 46753938--46754009 Score: 119
Period size: 31 Copynumber: 2.3 Consensus size: 32
46753928 TAGGTGACAG
*
46753938 AATCAGAATCAGTATCAGGTAACAGAATC-AA
1 AATCAGAATCAATATCAGGTAACAGAATCAAA
*
46753969 AATCAGAATTAATATCAGGTAACAGAATCAAA
1 AATCAGAATCAATATCAGGTAACAGAATCAAA
46754001 AATCAGAAT
1 AATCAGAAT
46754010 GTGAATACAA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
31 27 0.71
32 11 0.29
ACGTcount: A:0.51, C:0.14, G:0.14, T:0.21
Consensus pattern (32 bp):
AATCAGAATCAATATCAGGTAACAGAATCAAA
Found at i:46754245 original size:27 final size:27
Alignment explanation
Indices: 46754146--46754247 Score: 116
Period size: 27 Copynumber: 3.8 Consensus size: 27
46754136 GCTCAGTTAT
* * *
46754146 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
* *
46754173 CAGATATTGTGGCAGTGACACCAG-AA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
46754199 CAGATATTTGTGGCATAGCCACCAGAAA
1 CAGATA-TTGTGGCAGAGCCACCAGAAA
* *
46754227 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
46754248 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 7 0.11
27 49 0.77
28 8 0.12
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:46754434 original size:22 final size:22
Alignment explanation
Indices: 46754406--46754471 Score: 80
Period size: 22 Copynumber: 3.0 Consensus size: 22
46754396 GCAAATACGT
*
46754406 TTGGCACACAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
* *
46754428 TTGGCACAGAGCCAT-ATGTAGG
1 TTGGCACAAAGCCATAAT-CAGG
*
46754450 TTGACACAAAGCCATAATCAGG
1 TTGGCACAAAGCCATAATCAGG
46754472 AGGCTTTAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.05
22 33 0.89
23 2 0.05
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAATCAGG
Found at i:46754969 original size:170 final size:170
Alignment explanation
Indices: 46754683--46755023 Score: 664
Period size: 170 Copynumber: 2.0 Consensus size: 170
46754673 GCAACCATGC
46754683 GATCCTACCAGATTAGATCTTCCTCCGTACAAAATCCCAACCCATGCAACTTGTCATGTATGCAG
1 GATCCTACCAGATTAGATCTTCCTCCGTACAAAATCCCAACCCATGCAACTTGTCATGTATGCAG
*
46754748 AATGTCATGCCCATATTTGAATCAAACAATCAAAGTCAAGTCATTCATATACCAACATATATTCA
66 AATGTCATGCCCATATTTGAATCAAACAATCAAAGTCAAGTCATCCATATACCAACATATATTCA
*
46754813 CAATCAAATTCGTCAACCACACAGTCCAAGTTAGTCACTT
131 CAATAAAATTCGTCAACCACACAGTCCAAGTTAGTCACTT
46754853 GATCCTACCAGATTAGATCTTCCTCCGTACAAAATCCCAACCCATGCAACTTGTCATGTATGCAG
1 GATCCTACCAGATTAGATCTTCCTCCGTACAAAATCCCAACCCATGCAACTTGTCATGTATGCAG
46754918 AATGTCATGCCCATATTTGAATCAAACAATCAAAGTCAAGTCATCCATATACCAACATATATTCA
66 AATGTCATGCCCATATTTGAATCAAACAATCAAAGTCAAGTCATCCATATACCAACATATATTCA
46754983 CAATAAAATTCGTCAACCACACAGTCCAAGTTAGTCACTT
131 CAATAAAATTCGTCAACCACACAGTCCAAGTTAGTCACTT
46755023 G
1 G
46755024 GCCACAAGGG
Statistics
Matches: 169, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
170 169 1.00
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.27
Consensus pattern (170 bp):
GATCCTACCAGATTAGATCTTCCTCCGTACAAAATCCCAACCCATGCAACTTGTCATGTATGCAG
AATGTCATGCCCATATTTGAATCAAACAATCAAAGTCAAGTCATCCATATACCAACATATATTCA
CAATAAAATTCGTCAACCACACAGTCCAAGTTAGTCACTT
Found at i:46755124 original size:27 final size:27
Alignment explanation
Indices: 46755068--46755369 Score: 338
Period size: 27 Copynumber: 11.2 Consensus size: 27
46755058 GGGCAAAATG
* * * * *
46755068 GTAATTTTACCCCACA-AGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
46755094 GTAATTCCACCCTACAAGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
46755121 GTAATTCTACCTTACAGGGGTA-TTCGG
1 GTAATTCTACCCTACAGGGGTATTTC-A
*
46755148 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
46755175 GTAATTCTACCCTATAGCGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
46755202 GTATTTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
46755229 ATATTTCTACCCTACAGGGGTATCTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * * *
46755256 GTAATTCCACCTTACAGGAGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
**
46755283 GTAATTCTACCCTACAGGGGTATTTGG
1 GTAATTCTACCCTACAGGGGTATTTCA
46755310 GTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
46755337 GTAATTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
46755364 GTAATT
1 GTAATT
46755370 TTGTAAATCG
Statistics
Matches: 232, Mismatches: 41, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
26 15 0.06
27 214 0.92
28 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:46755383 original size:27 final size:26
Alignment explanation
Indices: 46755353--46755442 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 26
46755343 CTACCCTACA
46755353 AGGGTATTTCGGTAATTTTGTAAATCG
1 AGGGTATTT-GGTAATTTTGTAAATCG
** *
46755380 AGGGTAAAATGGTAATTCTGTAAATC-
1 AGGGT-ATTTGGTAATTTTGTAAATCG
** *
46755406 AGGGGTACTTTGGTAATTTTACAAGTCG
1 A-GGGTA-TTTGGTAATTTTGTAAATCG
46755434 AGGGTATTT
1 AGGGTATTT
46755443 CAATAATTTA
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
26 5 0.10
27 42 0.84
28 3 0.06
ACGTcount: A:0.29, C:0.08, G:0.27, T:0.37
Consensus pattern (26 bp):
AGGGTATTTGGTAATTTTGTAAATCG
Found at i:46755449 original size:27 final size:28
Alignment explanation
Indices: 46755406--46755720 Score: 226
Period size: 27 Copynumber: 11.7 Consensus size: 28
46755396 TCTGTAAATC
* * *
46755406 AGGGGTACTTTGGTAATTTTACAAGTCG
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
46755434 A-GGGTATTTCAATAA-TTTAC-AGGCTG
1 AGGGGTATTTTAGTAATTTTACAAGAC-G
* * *
46755460 A-GGGTATTTCAGTAATTTCACAAGTC-
1 AGGGGTATTTTAGTAATTTTACAAGACG
* *
46755486 AGGGGTATTTTGGTAATTTTACAA-ACT
1 AGGGGTATTTTAGTAATTTTACAAGACG
*
46755513 AGGGGTATTTT-GATAATTTTACAA-ACA
1 AGGGGTATTTTAG-TAATTTTACAAGACG
*
46755540 AGGGGTATTTTAGTAATTTTACAAG-CT
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
46755567 AGGGGTATTTTGGTAATTTTATAA-ACA
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
46755594 AAGGGTATTTTAGTAATTTTGCAA-ACC
1 AGGGGTATTTTAGTAATTTTACAAGACG
** * * * *
46755621 AATGGTATTTTGGTGATTTTATAA-ACC
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
46755648 AAGGGTATTTTAGTAATTTTATAA-ACC
1 AGGGGTATTTTAGTAATTTTACAAGACG
* * *
46755675 AAGGGTATTTTGGTAATTTTACAAG-CC
1 AGGGGTATTTTAGTAATTTTACAAGACG
*
46755702 AGGGGTATTTTGGTAATTT
1 AGGGGTATTTTAGTAATTT
46755721 GGTAAACTAA
Statistics
Matches: 244, Mismatches: 33, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
25 3 0.01
26 23 0.09
27 213 0.87
28 5 0.02
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.39
Consensus pattern (28 bp):
AGGGGTATTTTAGTAATTTTACAAGACG
Found at i:46755531 original size:54 final size:53
Alignment explanation
Indices: 46755408--46755720 Score: 288
Period size: 54 Copynumber: 5.8 Consensus size: 53
46755398 TGTAAATCAG
* * * * ** **
46755408 GGGTACTTTGGTAATTTTACAAGTC-GAGGGTATTTCAATAA-TTTACAGGCTGA
1 GGGTATTTTGGTAATTTTACAA-ACAG-GGGTATTTTAGTAATTTTACAAACCAA
** * * * * *
46755461 GGGTATTTCAGTAATTTCACAAGTCAGGGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAA-ACAGGGGTATTTTAGTAATTTTACAAACCAA
* * * *
46755515 GGGTATTTTGATAATTTTACAAACAAGGGGTATTTTAGTAATTTTACAAGCTAG
1 GGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTAGTAATTTTACAAACCAA
* * *
46755569 GGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTGCAAACCAA
1 GGGTATTTTGGTAATTTTACAAAC-AGGGGTATTTTAGTAATTTTACAAACCAA
* * * * *
46755623 TGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTACAAA-CAGGGGTATTTTAGTAATTTTACAAACCAA
* *
46755677 GGGTATTTTGGTAATTTTACAAGCCAGGGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTTTACAA-ACAGGGGTATTTTAGTAATTT
46755721 GGTAAACTAA
Statistics
Matches: 220, Mismatches: 35, Indels: 9
0.83 0.13 0.03
Matches are distributed among these distances:
53 33 0.15
54 186 0.85
55 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (53 bp):
GGGTATTTTGGTAATTTTACAAACAGGGGTATTTTAGTAATTTTACAAACCAA
Found at i:46755572 original size:81 final size:81
Alignment explanation
Indices: 46755461--46755720 Score: 301
Period size: 81 Copynumber: 3.2 Consensus size: 81
46755451 TACAGGCTGA
* * * * *
46755461 GGGTATTTCAGTAATTTCACAAG-TCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTATTTTG
1 GGGTATTTTAGTAATTTTACAAGCT-AGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTG
46755525 ATAATTTTACAAACAAG
65 ATAATTTTACAAACAAG
46755542 GGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTT-A
1 GGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGA
*
46755606 GTAATTTTGCAAACCAA-
66 -TAATTTTACAAA-CAAG
* * * * * * * * * *
46755623 TGGTATTTTGGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTATAAACCAAGGGTATTTTGG
1 GGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGA
* *
46755688 TAATTTTACAAGCCAG
66 TAATTTTACAAACAAG
*
46755704 GGGTATTTTGGTAATTT
1 GGGTATTTTAGTAATTT
46755721 GGTAAACTAA
Statistics
Matches: 153, Mismatches: 21, Indels: 10
0.83 0.11 0.05
Matches are distributed among these distances:
80 3 0.02
81 146 0.95
82 4 0.03
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (81 bp):
GGGTATTTTAGTAATTTTACAAGCTAGGGGTATTTTGGTAATTTTATAAACAAAGGGTATTTTGA
TAATTTTACAAACAAG
Found at i:46759021 original size:16 final size:16
Alignment explanation
Indices: 46759000--46759033 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
46758990 TTGTCGCGTT
*
46759000 GGGGTATGGCACACGA
1 GGGGTATGACACACGA
46759016 GGGGTATGACACACGA
1 GGGGTATGACACACGA
46759032 GG
1 GG
46759034 TTTATATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.18, G:0.44, T:0.12
Consensus pattern (16 bp):
GGGGTATGACACACGA
Found at i:46761552 original size:31 final size:31
Alignment explanation
Indices: 46761511--46761573 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
46761501 TTTAAATTAA
*
46761511 TTAATTAGATAAATATTATTTTATTAATATT
1 TTAATGAGATAAATATTATTTTATTAATATT
** * *
46761542 TTAATGAGATATTTATTATTTTTTTATTATT
1 TTAATGAGATAAATATTATTTTATTAATATT
46761573 T
1 T
46761574 ATTTAGTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (31 bp):
TTAATGAGATAAATATTATTTTATTAATATT
Found at i:46763292 original size:33 final size:32
Alignment explanation
Indices: 46763255--46763367 Score: 111
Period size: 33 Copynumber: 3.4 Consensus size: 32
46763245 TACCTAAAAG
46763255 GTACAATTGGAAAAGGAAATGTACACTGTATGT
1 GTACAATT-GAAAAGGAAATGTACACTGTATGT
* * * *
46763288 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAA-TTGAAAAGGAAATGTACACTGTATGT
* * * *
46763321 GTATACTTGAAAAGGAAATGTACGCCT-TGTGT
1 GTACAATTGAAAAGGAAATGTAC-ACTGTATGT
46763353 GTACAATGTGAAAAG
1 GTACAAT-TGAAAAG
46763368 TGGTAGCTTA
Statistics
Matches: 66, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
32 25 0.38
33 39 0.59
34 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (32 bp):
GTACAATTGAAAAGGAAATGTACACTGTATGT
Found at i:46763507 original size:31 final size:31
Alignment explanation
Indices: 46763360--46763507 Score: 183
Period size: 31 Copynumber: 4.8 Consensus size: 31
46763350 TGTGTACAAT
*
46763360 GTGAAAAGTGGTAGCTT-ATGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCA-GCTACCTAATCA
*
46763391 GTGAAAAGTGGTAGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
* * *
46763422 GTGAAAAGTAGTAGCTTAAGCTACC-AGATTA
1 GTGAAAAGTGGTAGCTTCAGCTACCTA-ATCA
* *
46763453 GTGAAAAGTGGTAGCTCCAGCTACCTAATTA
1 GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
* *
46763484 GTGAATAGTGGTAGCTTCGGCTAC
1 GTGAAAAGTGGTAGCTTCAGCTAC
46763508 AAGTGACAAG
Statistics
Matches: 102, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
30 1 0.01
31 100 0.98
32 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCAGCTACCTAATCA
Found at i:46763507 original size:62 final size:62
Alignment explanation
Indices: 46763360--46763500 Score: 210
Period size: 62 Copynumber: 2.3 Consensus size: 62
46763350 TGTGTACAAT
* * * *
46763360 GTGAAAAGTGGTAGCTTATGCTACCTGATCAGTGAAAAGTGGTAGCTTCGGCTACCTAATCA
1 GTGAAAAGTGGTAGCTTAAGCTACCAGATCAGTGAAAAGTGGTAGCTCCAGCTACCTAATCA
* * *
46763422 GTGAAAAGTAGTAGCTTAAGCTACCAGATTAGTGAAAAGTGGTAGCTCCAGCTACCTAATTA
1 GTGAAAAGTGGTAGCTTAAGCTACCAGATCAGTGAAAAGTGGTAGCTCCAGCTACCTAATCA
*
46763484 GTGAATAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
46763501 CGGCTACAAG
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
62 70 1.00
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.28
Consensus pattern (62 bp):
GTGAAAAGTGGTAGCTTAAGCTACCAGATCAGTGAAAAGTGGTAGCTCCAGCTACCTAATCA
Found at i:46763628 original size:27 final size:27
Alignment explanation
Indices: 46763597--46763661 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
46763587 TAGTTGAACT
*
46763597 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
46763624 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
46763651 ATAGCAAAGTG
1 ATGGCAAAGTG
46763662 TTCAGTGATG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:46767735 original size:27 final size:27
Alignment explanation
Indices: 46767697--46767750 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
46767687 ATAGATTAGT
46767697 TAGCACATAAAGCATACGTGTTATCAA
1 TAGCACATAAAGCATACGTGTTATCAA
46767724 TAGCACATAAAGCATACGTGTTATCAA
1 TAGCACATAAAGCATACGTGTTATCAA
46767751 ATATAATCTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.26
Consensus pattern (27 bp):
TAGCACATAAAGCATACGTGTTATCAA
Found at i:46768474 original size:47 final size:47
Alignment explanation
Indices: 46768414--46768530 Score: 216
Period size: 47 Copynumber: 2.5 Consensus size: 47
46768404 ATCCATTAGT
* *
46768414 GAACTCAGACTCAACCCAACGAGTTCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
46768461 GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
1 GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
46768508 GAACTCGGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
46768531 CCGGAACTCA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.32, C:0.31, G:0.17, T:0.21
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCAC
Found at i:46769732 original size:80 final size:80
Alignment explanation
Indices: 46769599--46769756 Score: 253
Period size: 80 Copynumber: 2.0 Consensus size: 80
46769589 GTTATATCCG
** *
46769599 GTTGTAGCTCAATTTTTGTCGGTGAAATTACATGTGAAGGATCCGAATGATACCGACGTAACATA
1 GTTGTAGCTCAATTTCCGTCGGTGAAATTACATGTGAAGGATCCGAACGATACCGACGTAACATA
46769664 AATACATGGAACATA
66 AATACATGGAACATA
* *
46769679 GTTGTAGCTCAATTTCCGTCGGTGAAATTACATGTGAAGGATCCGAACGATACCGATGTAGCATA
1 GTTGTAGCTCAATTTCCGTCGGTGAAATTACATGTGAAGGATCCGAACGATACCGACGTAACATA
* *
46769744 GATACGTGGAACA
66 AATACATGGAACA
46769757 CATCATGAAT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 71 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.27
Consensus pattern (80 bp):
GTTGTAGCTCAATTTCCGTCGGTGAAATTACATGTGAAGGATCCGAACGATACCGACGTAACATA
AATACATGGAACATA
Found at i:46782547 original size:46 final size:46
Alignment explanation
Indices: 46782396--46782570 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
46782386 GCATTATGAG
* * **
46782396 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGAATCGAGACG-A
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACGTA
* * * *
46782443 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGTA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTA
* * * *
46782490 AGCCTGCGTAAGACATGTCTGGGATATGCATTGG-CTACGAGATG-A
1 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCT-CGAGACGTA
*
46782535 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATTG
1 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTG
46782571 ACATGAGATA
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
45 3 0.03
46 57 0.55
47 27 0.26
48 17 0.16
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTA
Found at i:46782579 original size:47 final size:47
Alignment explanation
Indices: 46782399--46782619 Score: 145
Period size: 47 Copynumber: 4.7 Consensus size: 47
46782389 TTATGAGAGC
*
46782399 CAGTGTAAGACCATGTTTGGGACATGGCATCGGA-ATCGAGACG--AGT
1 CAGTGTAAGA-CATGTCTGGGACATGGCATCGGACAT-GAGACGTAAGT
* * *
46782445 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGAGACGTAAGC
1 -C-AGTGTAAGACATGTCTGGGACATGGCATCGGACATGAGACGTAAGT
* * * * * *
46782493 CTGCGTAAGACATGTCTGGGATAT-GCATTGG-CTACGAGATG-ATAGT
1 CAGTGTAAGACATGTCTGGGACATGGCATCGGAC-ATGAGACGTA-AGT
* ** *
46782539 CAGTGTAAGACCATGTCTGGGACATGGCAT-TGACATGAGATATGAG-
1 CAGTGTAAGA-CATGTCTGGGACATGGCATCGGACATGAGACGTAAGT
* * *
46782585 CTAGTGTAAGATCGTGTCTAGGACATGGCACCGGA
1 C-AGTGTAAGA-CATGTCTGGGACATGGCATCGGA
46782620 AACTTACTCA
Statistics
Matches: 138, Mismatches: 24, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.01
46 55 0.40
47 63 0.46
48 18 0.13
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACATGTCTGGGACATGGCATCGGACATGAGACGTAAGT
Found at i:46783812 original size:21 final size:22
Alignment explanation
Indices: 46783772--46783812 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
46783762 TCAAATTGGT
46783772 CACACGGGCGTGTCGCCCCTCC
1 CACACGGGCGTGTCGCCCCTCC
*
46783794 CACACTGGCGTGT-GCCCCT
1 CACACGGGCGTGTCGCCCCT
46783813 ATGCCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.10, C:0.46, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCGTGTCGCCCCTCC
Found at i:46785755 original size:46 final size:46
Alignment explanation
Indices: 46785604--46785778 Score: 149
Period size: 46 Copynumber: 3.7 Consensus size: 46
46785594 GCATTATGAG
* * **
46785604 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGAATCGAGACG-A
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACGTA
* * * *
46785651 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTTGAGACGTA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTA
* * * *
46785698 AGCCTGCGTAAGACATGTCTGGGATATGCATTGG-CTACGAGATG-A
1 AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCT-CGAGACGTA
*
46785743 TAGTCAGTGTAAGACCATGTCTGGGACATGGCATTG
1 -AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATTG
46785779 ACATGAGATA
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
45 3 0.03
46 57 0.55
47 27 0.26
48 17 0.16
ACGTcount: A:0.26, C:0.18, G:0.31, T:0.24
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATTGGCCTCGAGACGTA
Found at i:46785787 original size:47 final size:47
Alignment explanation
Indices: 46785607--46785827 Score: 145
Period size: 47 Copynumber: 4.7 Consensus size: 47
46785597 TTATGAGAGC
*
46785607 CAGTGTAAGACCATGTTTGGGACATGGCATCGGA-ATCGAGACG--AGT
1 CAGTGTAAGA-CATGTCTGGGACATGGCATCGGACAT-GAGACGTAAGT
* * *
46785653 GCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTTGAGACGTAAGC
1 -C-AGTGTAAGACATGTCTGGGACATGGCATCGGACATGAGACGTAAGT
* * * * * *
46785701 CTGCGTAAGACATGTCTGGGATAT-GCATTGG-CTACGAGATG-ATAGT
1 CAGTGTAAGACATGTCTGGGACATGGCATCGGAC-ATGAGACGTA-AGT
* ** *
46785747 CAGTGTAAGACCATGTCTGGGACATGGCAT-TGACATGAGATATGAG-
1 CAGTGTAAGA-CATGTCTGGGACATGGCATCGGACATGAGACGTAAGT
* * *
46785793 CTAGTGTAAGATCGTGTCTAGGACATGGCACCGGA
1 C-AGTGTAAGA-CATGTCTGGGACATGGCATCGGA
46785828 AACTTACTCA
Statistics
Matches: 138, Mismatches: 24, Indels: 23
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.01
46 55 0.40
47 63 0.46
48 18 0.13
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (47 bp):
CAGTGTAAGACATGTCTGGGACATGGCATCGGACATGAGACGTAAGT
Found at i:46787020 original size:21 final size:22
Alignment explanation
Indices: 46786980--46787020 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
46786970 TCAAATTGGT
46786980 CACACGGGCGTGTCGCCCCTCC
1 CACACGGGCGTGTCGCCCCTCC
*
46787002 CACACTGGCGTGT-GCCCCT
1 CACACGGGCGTGTCGCCCCT
46787021 ATGCCAAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.10, C:0.46, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCGTGTCGCCCCTCC
Found at i:46788626 original size:16 final size:16
Alignment explanation
Indices: 46788607--46788637 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46788597 CTTCTTCACT
46788607 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
46788623 TACTTACTTACTTAA
1 TACTCACTTACTTAA
46788638 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:46788643 original size:20 final size:20
Alignment explanation
Indices: 46788604--46788643 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
46788594 AAACTTCTTC
* *
46788604 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
46788624 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
46788644 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:46790893 original size:34 final size:34
Alignment explanation
Indices: 46790834--46790899 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
46790824 GTTTTAGTTA
* *
46790834 GGGCCTTAGCCCAATACAGTAACAGTATCAGTGT
1 GGGCCTTAGCCCAATACAATAACAGTAACAGTGT
* * *
46790868 GGGCCTTAGCCCACTTCAATGACAGTAACAGT
1 GGGCCTTAGCCCAATACAATAACAGTAACAGT
46790900 ACAGTTATGC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (34 bp):
GGGCCTTAGCCCAATACAATAACAGTAACAGTGT
Found at i:46799846 original size:27 final size:26
Alignment explanation
Indices: 46799816--46799891 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 26
46799806 GTATACATGG
*
46799816 GGTAGTCTGCTAGGACAGTAAACACAA
1 GGTAGTCTGCTAGGACAATAAACAC-A
*
46799843 GGTAGTC--CATCGGAACAATAAACACA
1 GGTAGTCTGC-TAGG-ACAATAAACACA
* *
46799869 GGCTAGTCTGCCAGGACATTAAA
1 GG-TAGTCTGCTAGGACAATAAA
46799892 TATGGGATGA
Statistics
Matches: 39, Mismatches: 5, Indels: 10
0.72 0.09 0.19
Matches are distributed among these distances:
25 1 0.03
26 6 0.15
27 29 0.74
28 2 0.05
29 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (26 bp):
GGTAGTCTGCTAGGACAATAAACACA
Found at i:46799995 original size:27 final size:27
Alignment explanation
Indices: 46799964--46800022 Score: 82
Period size: 27 Copynumber: 2.2 Consensus size: 27
46799954 ATTAAGCATG
* *
46799964 AGGTAGTCCACTAGGACATTAAATACA
1 AGGTAGTCCACCAGGACATTAAACACA
* *
46799991 GGGTAGTCCGCCAGGACATTAAACACA
1 AGGTAGTCCACCAGGACATTAAACACA
46800018 AGGTA
1 AGGTA
46800023 AACTACCAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.37, C:0.20, G:0.24, T:0.19
Consensus pattern (27 bp):
AGGTAGTCCACCAGGACATTAAACACA
Found at i:46804336 original size:20 final size:20
Alignment explanation
Indices: 46804311--46804364 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
46804301 AGGGGCATAT
46804311 GCCCGTGTGGCCTGGGACAC
1 GCCCGTGTGGCCTGGGACAC
*
46804331 GCCCGTGTGGCCTGGGACAT
1 GCCCGTGTGGCCTGGGACAC
46804351 GCCCGTGTGGCCTG
1 GCCCGTGTGGCCTG
46804365 CCCATGGGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.07, C:0.33, G:0.41, T:0.19
Consensus pattern (20 bp):
GCCCGTGTGGCCTGGGACAC
Found at i:46805275 original size:52 final size:52
Alignment explanation
Indices: 46805146--46805308 Score: 177
Period size: 52 Copynumber: 3.1 Consensus size: 52
46805136 TCTTACACGG
* * *
46805146 ATCACATAACATACCGATGCCATATCTCAGATATGGTCTTATACGGAATCACATT
1 ATCACAT--CATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACA-T
* * * * *
46805201 ATCACATCATACCAATGCCATAGCCCTGCTATGGTATTATACGGGATCTCGA-
1 ATCACATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCAC-AT
**
46805253 ATCACATTGTACCGATGCCATAGCCCAGCTATGGTCTTATACGGAAGT-ACAT
1 ATCACATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAA-TCACAT
46805305 ATCA
1 ATCA
46805309 TATCTTTTCC
Statistics
Matches: 90, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
51 1 0.01
52 45 0.50
53 36 0.40
54 1 0.01
55 7 0.08
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (52 bp):
ATCACATCATACCGATGCCATAGCCCAGCTATGGTCTTATACGGAATCACAT
Found at i:46810062 original size:3 final size:3
Alignment explanation
Indices: 46810054--46810084 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
46810044 CTTTCAATTC
46810054 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
46810085 AAACTTACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:46818618 original size:69 final size:69
Alignment explanation
Indices: 46818507--46818639 Score: 239
Period size: 69 Copynumber: 1.9 Consensus size: 69
46818497 AAAAATAGAG
* * *
46818507 ATTTAGAACATATTAATCCGAAAATAATTAACCACCGTAAATCGCAGAATATGTACTAATATACC
1 ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATACC
46818572 AAAA
66 AAAA
46818576 ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATAC
1 ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATAC
46818640 TAAGTATCAG
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 61 1.00
ACGTcount: A:0.49, C:0.17, G:0.08, T:0.26
Consensus pattern (69 bp):
ATTTAGAACATATTAATCCGAAAATAATTAACCAACGTAAATCACAGAATAAGTACTAATATACC
AAAA
Found at i:46820429 original size:31 final size:31
Alignment explanation
Indices: 46820382--46820455 Score: 112
Period size: 31 Copynumber: 2.4 Consensus size: 31
46820372 AGTACACTTC
* * *
46820382 ATTTCAATGATTAAATTTCGTAATTTTTTTT
1 ATTTAAATAATTAAATTTCGTAATTTTTTTG
46820413 ATTTAAATAATTAAATTTCGTAATTTTTTTG
1 ATTTAAATAATTAAATTTCGTAATTTTTTTG
*
46820444 ATTTAATTAATT
1 ATTTAAATAATT
46820456 GATTTTTCGG
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 39 1.00
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (31 bp):
ATTTAAATAATTAAATTTCGTAATTTTTTTG
Found at i:46821394 original size:7 final size:8
Alignment explanation
Indices: 46821370--46821394 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
46821360 TATTTTAGTT
46821370 AAATTAAA
1 AAATTAAA
46821378 AAATTAAA
1 AAATTAAA
46821386 AAATTAAA
1 AAATTAAA
46821394 A
1 A
46821395 TCTTATTCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATTAAA
Found at i:46821601 original size:11 final size:11
Alignment explanation
Indices: 46821587--46821622 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
46821577 TACTCTTTAG
46821587 AATTTTTTAAA
1 AATTTTTTAAA
*
46821598 AATTTTTTATA
1 AATTTTTTAAA
*
46821609 ATTTTTTTAAA
1 AATTTTTTAAA
46821620 AAT
1 AAT
46821623 AAATTTTGGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
AATTTTTTAAA
Found at i:46821682 original size:20 final size:18
Alignment explanation
Indices: 46821623--46821686 Score: 67
Period size: 20 Copynumber: 3.4 Consensus size: 18
46821613 TTTTAAAAAT
*
46821623 AAATTTTGGAACTTTTATA
1 AAATTTT-GAATTTTTATA
46821642 AAATTTTGAATTTTTGA-A
1 AAATTTTGAATTTTT-ATA
*
46821660 AAATATGTTGAATTTTTTTA
1 AAAT-T-TTGAATTTTTATA
46821680 AAATTTT
1 AAATTTT
46821687 TAAAAATTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
18 14 0.36
19 10 0.26
20 15 0.38
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.52
Consensus pattern (18 bp):
AAATTTTGAATTTTTATA
Found at i:46824016 original size:27 final size:27
Alignment explanation
Indices: 46823986--46824163 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46823976 ATATTGAGTC
* * * *
46823986 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
46824013 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46824040 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
46824068 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
46824095 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
46824122 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46824149 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46824164 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:46824125 original size:82 final size:81
Alignment explanation
Indices: 46824007--46824162 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46823997 TGCTATATAA
* *
46824007 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
46824072 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
46824089 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46824153 CACTTAGTGC
65 CACTTAGTGC
46824163 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46832205 original size:27 final size:27
Alignment explanation
Indices: 46832175--46832352 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46832165 ATATTGAGTC
* * * *
46832175 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
46832202 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46832229 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
46832257 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
46832284 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
46832311 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
46832338 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
46832353 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:46832314 original size:82 final size:81
Alignment explanation
Indices: 46832196--46832351 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46832186 TGCTATATAA
* *
46832196 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
46832261 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
46832278 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
46832342 CACTTAGTGC
65 CACTTAGTGC
46832352 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:46834472 original size:16 final size:16
Alignment explanation
Indices: 46834451--46834486 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
46834441 CTTATTTTTA
46834451 CATCAAGATTATGCAC
1 CATCAAGATTATGCAC
*
46834467 CATCAAGATTGTGCAC
1 CATCAAGATTATGCAC
46834483 CATC
1 CATC
46834487 TCCTTTACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (16 bp):
CATCAAGATTATGCAC
Found at i:46845598 original size:22 final size:25
Alignment explanation
Indices: 46845555--46845601 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
46845545 TATTATTTTA
46845555 ATTTAATTATATATATATTTTGGTT
1 ATTTAATTATATATATATTTTGGTT
*
46845580 ATTTTATTAT-TAT-TA-TTTGGTT
1 ATTTAATTATATATATATTTTGGTT
46845602 TTGGATTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 2 0.10
24 3 0.14
25 9 0.43
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.64
Consensus pattern (25 bp):
ATTTAATTATATATATATTTTGGTT
Found at i:46851543 original size:46 final size:46
Alignment explanation
Indices: 46851429--46851649 Score: 180
Period size: 48 Copynumber: 4.7 Consensus size: 46
46851419 CTATCAGTGT
* * *
46851429 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTT-GTATATCACGAGGT
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTCG-ATCTCA--AGGC
* *
46851478 CGATGCATGTCTCAGACATGTCTTACACTAGCTCTCGA-CTCAATGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TCGATCTCAAGGC
* ** *
46851524 CGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCAAGGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTT--CGATCTCAAGGC
* * * * **
46851572 CGATGCATGTCCTAAACATGTCTTACATTGGCTCTC-ATGCT-GTGGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-TCGAT-CTCAAGGC
* *
46851618 TGATGCATGTCCCGGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
46851650 ACACACGTCA
Statistics
Matches: 141, Mismatches: 24, Indels: 17
0.77 0.13 0.09
Matches are distributed among these distances:
45 1 0.01
46 63 0.45
47 3 0.02
48 65 0.46
49 8 0.06
50 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTCGATCTCAAGGC
Found at i:46851547 original size:94 final size:94
Alignment explanation
Indices: 46851429--46851649 Score: 268
Period size: 94 Copynumber: 2.3 Consensus size: 94
46851419 CTATCAGTGT
* ** * *
46851429 CGATGCCATGTCCCAGACAGGTCTTACACTAGCTTGTATATCACGAGGTCGATGCATGT-CTCAG
1 CGATG-CATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGTCGATGCATGTCCT-AA
46851493 ACATGTCTTACACTAGCTCTCGACT-CAAT-GC
64 ACATGTCTTACACTAGCTCTC-A-TGCAATGGC
* *
46851524 CGATGCATGTCCCAGACATGTCTTACACTGGCTTAAATATCTCAAGGTCGATGCATGTCCTAAAC
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGTCGATGCATGTCCTAAAC
* * **
46851589 ATGTCTTACATTGGCTCTCATGCTGTGGC
66 ATGTCTTACACTAGCTCTCATGCAATGGC
* *
46851618 TGATGCATGTCCCGGACATGTCTTACACTAGC
1 CGATGCATGTCCCAGACATGTCTTACACTAGC
46851650 ACACACGTCA
Statistics
Matches: 109, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
92 1 0.01
93 3 0.03
94 98 0.90
95 7 0.06
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (94 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTTAAATATCACAAGGTCGATGCATGTCCTAAAC
ATGTCTTACACTAGCTCTCATGCAATGGC
Found at i:46875228 original size:27 final size:27
Alignment explanation
Indices: 46875197--46875374 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46875187 TAAATTGTAC
46875197 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
46875224 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46875250 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
46875278 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
46875306 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46875333 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46875360 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46875375 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:46875311 original size:82 final size:81
Alignment explanation
Indices: 46875198--46875353 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46875188 AAATTGTACA
* *
46875198 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
46875262 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
46875279 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
46875344 TGCGAGTTGA
65 TGCGAATTGA
46875354 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46875365 original size:82 final size:81
Alignment explanation
Indices: 46875194--46875374 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
46875184 GATTAAATTG
* *
46875194 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
46875259 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
46875275 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
46875339 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
46875357 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46875375 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:46883291 original size:27 final size:27
Alignment explanation
Indices: 46883260--46883437 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
46883250 TAAATTGTAC
46883260 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
46883287 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46883313 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
46883341 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
46883369 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
46883396 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
46883423 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46883438 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:46883374 original size:82 final size:81
Alignment explanation
Indices: 46883261--46883416 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
46883251 AAATTGTACA
* *
46883261 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
46883325 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
46883342 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
46883407 TGCGAGTTGA
65 TGCGAATTGA
46883417 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:46883428 original size:82 final size:81
Alignment explanation
Indices: 46883257--46883437 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
46883247 GATTAAATTG
* *
46883257 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
46883322 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
46883338 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
46883402 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
46883420 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
46883438 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:46892530 original size:37 final size:36
Alignment explanation
Indices: 46892479--46892553 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
46892469 ATGACCGATG
46892479 TTGTTGTGATTAGCCAAATGTAT-TGGCTTATAATGAT
1 TTGTTGTGATTAGCCAAA-G-ATGTGGCTTATAATGAT
*
46892516 TTGTTGT-ATGTAGCCATAGATGTGGCTTATAATGAT
1 TTGTTGTGAT-TAGCCAAAGATGTGGCTTATAATGAT
46892552 TT
1 TT
46892554 TGGCTTGTAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
35 2 0.06
36 19 0.54
37 14 0.40
ACGTcount: A:0.25, C:0.08, G:0.23, T:0.44
Consensus pattern (36 bp):
TTGTTGTGATTAGCCAAAGATGTGGCTTATAATGAT
Found at i:46892952 original size:18 final size:18
Alignment explanation
Indices: 46892911--46892954 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
46892901 GTGCCCCAAG
*
46892911 CCACACGGGTGTGTGAGT
1 CCACACGGGCGTGTGAGT
**
46892929 AGACACGGGCGTGTGAGT
1 CCACACGGGCGTGTGAGT
46892947 CCACACGG
1 CCACACGG
46892955 CCCATCTACA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.20, C:0.25, G:0.39, T:0.16
Consensus pattern (18 bp):
CCACACGGGCGTGTGAGT
Found at i:46899060 original size:56 final size:56
Alignment explanation
Indices: 46898969--46899140 Score: 326
Period size: 56 Copynumber: 3.1 Consensus size: 56
46898959 ACAAGGGATG
*
46898969 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGACAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
46899025 ATGGACAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGACAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
46899081 ATGGACAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGACAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
46899137 ATGG
1 ATGG
46899141 GCAATAAACT
Statistics
Matches: 114, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 114 1.00
ACGTcount: A:0.47, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGACAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:46900696 original size:2 final size:2
Alignment explanation
Indices: 46900689--46900718 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
46900679 CATTCCGAAG
46900689 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
46900719 CACAAGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:46901235 original size:28 final size:28
Alignment explanation
Indices: 46901197--46901406 Score: 386
Period size: 28 Copynumber: 7.5 Consensus size: 28
46901187 TAAATTGTAC
*
46901197 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
46901225 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
46901253 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
46901281 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
46901309 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
46901337 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
46901365 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
46901392 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
46901407 GACTTAATAT
Statistics
Matches: 179, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
27 23 0.13
28 156 0.87
ACGTcount: A:0.25, C:0.12, G:0.29, T:0.34
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:46909454 original size:39 final size:40
Alignment explanation
Indices: 46909359--46909581 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
46909349 TTGAATGATG
*
46909359 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
46909397 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
46909438 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
46909477 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
46909516 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
46909555 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46909582 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:46909545 original size:79 final size:81
Alignment explanation
Indices: 46909359--46909581 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
46909349 TTGAATGATG
* * *
46909359 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
46909420 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
46909438 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
46909500 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
46909516 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
46909580 TG
66 TG
46909582 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:46909603 original size:79 final size:79
Alignment explanation
Indices: 46909359--46909614 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
46909349 TTGAATGATG
* * * *
46909359 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
46909420 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
46909438 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
46909502 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
46909516 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
46909580 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
46909596 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
46909615 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:46912772 original size:9 final size:9
Alignment explanation
Indices: 46912758--46912783 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
46912748 TGGAATCATA
46912758 GGAGGTGGG
1 GGAGGTGGG
46912767 GGAGGTGGG
1 GGAGGTGGG
46912776 GGAGGTGG
1 GGAGGTGG
46912784 AGTATTCAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.77, T:0.12
Consensus pattern (9 bp):
GGAGGTGGG
Found at i:46913356 original size:21 final size:22
Alignment explanation
Indices: 46913330--46913371 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
46913320 CACTTGACAT
*
46913330 AGGGGC-ACACGCCTGTGTGGG
1 AGGGGCAACACGCCCGTGTGGG
46913351 AGGGGCAACACGCCCGTGTGG
1 AGGGGCAACACGCCCGTGTGG
46913372 CTCACATGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.17, C:0.26, G:0.45, T:0.12
Consensus pattern (22 bp):
AGGGGCAACACGCCCGTGTGGG
Found at i:46924620 original size:46 final size:45
Alignment explanation
Indices: 46924512--46924645 Score: 128
Period size: 46 Copynumber: 2.9 Consensus size: 45
46924502 GGTTTATCAA
* * *
46924512 TCATCTCG-TAGCCGGTGCATGTCCCGGACATGTCTTACACTGGCT
1 TCATCTCGATA-CCGATGCATGTCCCGGACATGTCTTACACTAGCG
* * ***
46924557 TACGTCTTGAGGTCGATGCATGTCCCGGACATGTCTTACACTAGCAG
1 T-CATCTCGATACCGATGCATGTCCCGGACATGTCTTACACTAGC-G
46924604 TCATCTCGATACCGATGCAATGTCCCAGG-CATGGTCTTACAC
1 TCATCTCGATACCGATGC-ATGTCCC-GGACAT-GTCTTACAC
46924646 AGGCTCTCAT
Statistics
Matches: 70, Mismatches: 13, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
45 1 0.01
46 47 0.67
47 11 0.16
48 11 0.16
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.28
Consensus pattern (45 bp):
TCATCTCGATACCGATGCATGTCCCGGACATGTCTTACACTAGCG
Found at i:46928830 original size:27 final size:26
Alignment explanation
Indices: 46928775--46928832 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
46928765 TACATCTCAA
* *
46928775 AGGGGCATATCAGTCATTTACCATGT
1 AGGGGCATATCAATCATTTACAATGT
*
46928801 AGGGGCATTTCAATCATTTTACTAAT-T
1 AGGGGCATATCAATCA-TTTAC-AATGT
46928828 AGGGG
1 AGGGG
46928833 GTCTAGGTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 14 0.52
27 11 0.41
28 2 0.07
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.33
Consensus pattern (26 bp):
AGGGGCATATCAATCATTTACAATGT
Found at i:46930901 original size:46 final size:46
Alignment explanation
Indices: 46930766--46930982 Score: 163
Period size: 46 Copynumber: 4.6 Consensus size: 46
46930756 TAGACAAGGT
* **
46930766 GCCGATGCCATGTCCCAGACACGGTCTTACACT-GACAATCATCTCGTA-
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAG-CTCTCATCTCG-AG
* * * * *
46930814 GCCGGTACCTGTCCCAGACATGTCTTACACTGGCT-TACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAG
* * *
46930860 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
* * * * *
46930906 GCCGATGCCATATCCCCGACATGGTTTTACACTAGCTCTCATAAT-GTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCAT-CTCGAG
* * *
46930954 GGCGGTGCATGTCTCAGACATGTCTTACA
1 GCCGATGCATGTCCCAGACATGTCTTACA
46930983 TTATCTCACA
Statistics
Matches: 136, Mismatches: 26, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
45 2 0.01
46 69 0.51
47 37 0.27
48 27 0.20
49 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAG
Found at i:46937692 original size:47 final size:44
Alignment explanation
Indices: 46937576--46937753 Score: 180
Period size: 46 Copynumber: 3.8 Consensus size: 44
46937566 ATGGGTAAAG
* * **
46937576 TGCCGATGCCATGTCCCAGACACGGTCTTACACT-GACTATCATCTTG
1 TGCCGATG-CATGTCCCAGACA-TGTCTTACACTAG-CTCTC-TCTAA
*
46937623 TGCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAA
1 TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTC-TCT-AA
* *
46937669 TACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ATAA
1 TGCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCTCTAA
46937714 TGTGGCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
1 --T-GCCGATGCATGTCCCAGACATGTCTTACACTAGCTC
46937754 AGAAACAAAT
Statistics
Matches: 114, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
45 19 0.17
46 36 0.32
47 36 0.32
48 23 0.20
ACGTcount: A:0.23, C:0.31, G:0.18, T:0.28
Consensus pattern (44 bp):
TGCCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCTCTAA
Done.