Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 150 of 186
Found at i:49560935 original size:30 final size:30
Alignment explanation
Indices: 49560901--49560961 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
49560891 TCCTTAACTC
49560901 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
49560931 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
49560961 A
1 A
49560962 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:49563973 original size:49 final size:48
Alignment explanation
Indices: 49563901--49564120 Score: 216
Period size: 49 Copynumber: 4.6 Consensus size: 48
49563891 ACATCTAAGT
* *
49563901 GATGTCATGTCCCAGAGAGGTCTTACACTGACTTCCATATATCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGAC-TCCATATATCGAGGCC
* * * * * *
49563950 GATGCCATATCCCAGACAAGTCTTACACTGGCTCTCATCTATCGATGTC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTC-CATATATCGAGGCC
* * * * *
49563999 GACGCCATGTCCCATACAGGTCTTACACTGA---CACATGTC-AAGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGACTCCATATATCGAGGCC
* * * *
49564043 GATGCCATGTTCCAGACAGGTCTTACACTGGCTTGCATATCTCGAGGCC
1 GATGCCATGTCCCAGACAGGTCTTACACTGAC-TCCATATATCGAGGCC
*
49564092 GATG-CATGTCCCAGACATGTCTTACACTG
1 GATGCCATGTCCCAGACAGGTCTTACACTG
49564121 GCACACATAT
Statistics
Matches: 138, Mismatches: 27, Indels: 13
0.78 0.15 0.07
Matches are distributed among these distances:
44 30 0.22
45 5 0.04
48 31 0.22
49 72 0.52
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (48 bp):
GATGCCATGTCCCAGACAGGTCTTACACTGACTCCATATATCGAGGCC
Found at i:49564060 original size:93 final size:93
Alignment explanation
Indices: 49563851--49564131 Score: 266
Period size: 93 Copynumber: 3.0 Consensus size: 93
49563841 TATGTATGAT
* * * *
49563851 GCCGATGCCATGTTCCAAACATGGTCTTACACTAGCTCACA-C-ATCTAAGT-GATGTCATGTCC
1 GCCGATGCCATGTTCCAGACA-GGTCTTACACTGGCTCTCATCTATCGAAGTCGATG-CATGTCC
* * *
49563913 CAGAGAGGTCTTACACTGACTTCCATATATCGAG
64 CAGACAGGTCTTACACTGA----CACATATCGAA
* * * * *
49563947 GCCGATGCCATATCCCAGACAAGTCTTACACTGGCTCTCATCTATCGATGTCGACGCCATGTCCC
1 GCCGATGCCATGTTCCAGACAGGTCTTACACTGGCTCTCATCTATCGAAGTCGATG-CATGTCCC
* *
49564012 ATACAGGTCTTACACTGACACATGTC-AA
65 AGACAGGTCTTACACTGACACATATCGAA
* * * *
49564040 GCCGATGCCATGTTCCAGACAGGTCTTACACTGGCT-TGCATATCTCGAGGCCGATGCATGTCCC
1 GCCGATGCCATGTTCCAGACAGGTCTTACACTGGCTCT-CATCTATCGAAGTCGATGCATGTCCC
*
49564104 AGACATGTCTTACACTGGCACACATATC
65 AGACAGGTCTTACACT-G-ACACATATC
49564132 ACCCAAATGT
Statistics
Matches: 153, Mismatches: 26, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
92 23 0.15
93 48 0.31
94 14 0.09
95 16 0.10
96 19 0.12
97 6 0.04
98 27 0.18
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (93 bp):
GCCGATGCCATGTTCCAGACAGGTCTTACACTGGCTCTCATCTATCGAAGTCGATGCATGTCCCA
GACAGGTCTTACACTGACACATATCGAA
Found at i:49576483 original size:18 final size:17
Alignment explanation
Indices: 49576449--49576491 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
49576439 ATGGGCCATT
*
49576449 TTGGGCCGAATTGGGTC
1 TTGGGCCCAATTGGGTC
49576466 GTGTGGGCCCAA-TGGGTC
1 -T-TGGGCCCAATTGGGTC
49576484 TTGGGCCC
1 TTGGGCCC
49576492 CACATAGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 7 0.30
17 1 0.04
18 7 0.30
19 8 0.35
ACGTcount: A:0.09, C:0.23, G:0.42, T:0.26
Consensus pattern (17 bp):
TTGGGCCCAATTGGGTC
Found at i:49584025 original size:35 final size:36
Alignment explanation
Indices: 49583986--49584075 Score: 105
Period size: 34 Copynumber: 2.6 Consensus size: 36
49583976 GTCAGTTCAA
*
49583986 CCAAAACACACCAGATGCTCACACGAG-TAATCCCT
1 CCAAAACACACCAGATGCTCACACGAGCCAATCCCT
* * * * *
49584021 CC-AAACACACAAAAAGCTCATATGAGCCAATCCCT
1 CCAAAACACACCAGATGCTCACACGAGCCAATCCCT
49584056 CCAAAACACACC-GATGCTCA
1 CCAAAACACACCAGATGCTCA
49584076 TAAGAGATAG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
34 19 0.43
35 17 0.39
36 8 0.18
ACGTcount: A:0.40, C:0.37, G:0.10, T:0.13
Consensus pattern (36 bp):
CCAAAACACACCAGATGCTCACACGAGCCAATCCCT
Found at i:49584076 original size:35 final size:34
Alignment explanation
Indices: 49583986--49584077 Score: 96
Period size: 35 Copynumber: 2.6 Consensus size: 34
49583976 GTCAGTTCAA
* *
49583986 CCAAAACACACCAGATGCTCACACGAGTAATCCCT
1 CCAAAACACACC-GATGCTCATACGAGCAATCCCT
** * *
49584021 CC-AAACACACAAAAAGCTCATATGAGCCAATCCCT
1 CCAAAACACAC-CGATGCTCATACGAG-CAATCCCT
49584056 CCAAAACACACCGATGCTCATA
1 CCAAAACACACCGATGCTCATA
49584078 AGAGATAGTC
Statistics
Matches: 45, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
34 18 0.40
35 19 0.42
36 8 0.18
ACGTcount: A:0.40, C:0.36, G:0.10, T:0.14
Consensus pattern (34 bp):
CCAAAACACACCGATGCTCATACGAGCAATCCCT
Found at i:49586219 original size:35 final size:35
Alignment explanation
Indices: 49586180--49586305 Score: 180
Period size: 35 Copynumber: 3.6 Consensus size: 35
49586170 CATGGGAAAG
* *
49586180 TGTGAAACGTAGGTATCGTATCATCCATATTGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* * *
49586215 TGTGAAACGTAGGTATGGTATTAACCATACTGGGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
* *
49586250 TGTGAAACGTAGGTAAGGTATCATCCATACGGAGT
1 TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
*
49586285 TGTGAAATGTAGGTATGGTAT
1 TGTGAAACGTAGGTATGGTAT
49586306 TTCAATGAGG
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
35 79 1.00
ACGTcount: A:0.29, C:0.11, G:0.28, T:0.32
Consensus pattern (35 bp):
TGTGAAACGTAGGTATGGTATCATCCATACTGAGT
Found at i:49595779 original size:35 final size:35
Alignment explanation
Indices: 49595733--49595894 Score: 218
Period size: 35 Copynumber: 4.6 Consensus size: 35
49595723 CATGGAAAAA
* * *
49595733 TGTGAAACGTAGTTATAGTATTAACCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
* * * *
49595768 TGTGAAACGTAGGTATGGTATCATCCATATTGAGT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
49595803 TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
* * *
49595838 TGTGAAATGTAGGTATGGTA-TAATCTATTCGGAGT
1 TGTGAAATGTAGGTATGGTATTAA-CCATACTGAGT
49595873 TGTGAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
49595895 TCAATGAGGA
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
34 3 0.03
35 109 0.96
36 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
Found at i:49595807 original size:70 final size:69
Alignment explanation
Indices: 49595733--49595894 Score: 245
Period size: 70 Copynumber: 2.3 Consensus size: 69
49595723 CATGGAAAAA
* * * *
49595733 TGTGAAACGTAGTTATAGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATCATCCATAT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATAAT-C-TAT
49595798 T-GAGT
64 TCGAGT
*
49595803 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAATGTAGGTATGGTATAATCTATTC
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATAATCTATTC
49595868 GGAGT
66 -GAGT
49595873 TGTGAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
49595895 TCAATGAGGA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
68 4 0.05
69 1 0.01
70 80 0.94
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (69 bp):
TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATAATCTATTC
GAGT
Found at i:49596351 original size:27 final size:27
Alignment explanation
Indices: 49596313--49596367 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
49596303 ATGTATAAAG
*
49596313 TTTAAATGAAATGAATTAAAGATGTTA
1 TTTAAATGAAATGAAGTAAAGATGTTA
49596340 TTTAAATGAAATGAAGTAAAGATGTTA
1 TTTAAATGAAATGAAGTAAAGATGTTA
49596367 T
1 T
49596368 AAACTAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.36
Consensus pattern (27 bp):
TTTAAATGAAATGAAGTAAAGATGTTA
Found at i:49597827 original size:35 final size:35
Alignment explanation
Indices: 49597781--49597942 Score: 218
Period size: 35 Copynumber: 4.6 Consensus size: 35
49597771 CATGGAAAAA
* * *
49597781 TGTGAAACGTAGTTATAGTATTAACCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
* * * *
49597816 TGTGAAACGTAGGTATGGTATCATCCATATTGAGT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
49597851 TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
* * *
49597886 TGTGAAATGTAGGTATGGTA-TAATCTATTCGGAGT
1 TGTGAAATGTAGGTATGGTATTAA-CCATACTGAGT
49597921 TGTGAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
49597943 TCAATGAGGA
Statistics
Matches: 113, Mismatches: 12, Indels: 3
0.88 0.09 0.02
Matches are distributed among these distances:
34 3 0.03
35 109 0.96
36 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (35 bp):
TGTGAAATGTAGGTATGGTATTAACCATACTGAGT
Found at i:49597855 original size:70 final size:69
Alignment explanation
Indices: 49597781--49597942 Score: 245
Period size: 70 Copynumber: 2.3 Consensus size: 69
49597771 CATGGAAAAA
* * * *
49597781 TGTGAAACGTAGTTATAGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATCATCCATAT
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATAAT-C-TAT
49597846 T-GAGT
64 TCGAGT
*
49597851 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAATGTAGGTATGGTATAATCTATTC
1 TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATAATCTATTC
49597916 GGAGT
66 -GAGT
49597921 TGTGAAATGTAGGTATGGTATT
1 TGTGAAATGTAGGTATGGTATT
49597943 TCAATGAGGA
Statistics
Matches: 85, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
68 4 0.05
69 1 0.01
70 80 0.94
ACGTcount: A:0.30, C:0.08, G:0.26, T:0.36
Consensus pattern (69 bp):
TGTGAAATGTAGGTATGGTATTAACCATACTGAGTTGTGAAACGTAGGTATGGTATAATCTATTC
GAGT
Found at i:49598399 original size:27 final size:27
Alignment explanation
Indices: 49598361--49598415 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
49598351 ATGTATAAAG
*
49598361 TTTAAATGAAATGAATTAAAGATGTTA
1 TTTAAATGAAATGAAGTAAAGATGTTA
49598388 TTTAAATGAAATGAAGTAAAGATGTTA
1 TTTAAATGAAATGAAGTAAAGATGTTA
49598415 T
1 T
49598416 AAACTAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.47, C:0.00, G:0.16, T:0.36
Consensus pattern (27 bp):
TTTAAATGAAATGAAGTAAAGATGTTA
Found at i:49600254 original size:27 final size:27
Alignment explanation
Indices: 49600216--49600273 Score: 116
Period size: 27 Copynumber: 2.1 Consensus size: 27
49600206 TCAAATGCAG
49600216 CTTTCATGCAATCTCGAATAATCTGAA
1 CTTTCATGCAATCTCGAATAATCTGAA
49600243 CTTTCATGCAATCTCGAATAATCTGAA
1 CTTTCATGCAATCTCGAATAATCTGAA
49600270 CTTT
1 CTTT
49600274 GTCTTCAATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.31, C:0.22, G:0.10, T:0.36
Consensus pattern (27 bp):
CTTTCATGCAATCTCGAATAATCTGAA
Found at i:49605985 original size:46 final size:49
Alignment explanation
Indices: 49605918--49606018 Score: 131
Period size: 46 Copynumber: 2.1 Consensus size: 49
49605908 TGGAAGTTTA
* * *
49605918 TATATG-TGTGAAAGCCGAATGGTTAATGTGA-AATGTGTATGAGATG-G
1 TATATGTTGTGAAAGCCAAATGGCTAATGTGAGAA-ATGTATGAGATGTG
49605965 -ATATGTTGT-AAAGCCAAATGGCTAATGTGAGAAATGTATGAGATGTG
1 TATATGTTGTGAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATGTG
49606012 TATATGT
1 TATATGT
49606019 ATATTGTGGC
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
46 35 0.74
47 6 0.13
48 6 0.13
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.33
Consensus pattern (49 bp):
TATATGTTGTGAAAGCCAAATGGCTAATGTGAGAAATGTATGAGATGTG
Found at i:49612273 original size:18 final size:18
Alignment explanation
Indices: 49612252--49612289 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
49612242 CTAATATATT
49612252 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
49612270 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
49612288 AA
1 AA
49612290 TCATAAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:49612282 original size:13 final size:13
Alignment explanation
Indices: 49612266--49612290 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49612256 CAAGTACCCA
49612266 ACCCAACCCAATT
1 ACCCAACCCAATT
49612279 ACCCAACCCAAT
1 ACCCAACCCAAT
49612291 CATAAACATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:49612328 original size:5 final size:6
Alignment explanation
Indices: 49612315--49612355 Score: 55
Period size: 6 Copynumber: 6.5 Consensus size: 6
49612305 ATAATTTAAT
*
49612315 AAATAA AAATAA AAGTCTAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AA--ATAA AAATAA AAATAA AAATAA AAA
49612356 ACATATAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 26 0.84
8 5 0.16
ACGTcount: A:0.78, C:0.02, G:0.02, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:49612356 original size:20 final size:20
Alignment explanation
Indices: 49612315--49612356 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
49612305 ATAATTTAAT
* **
49612315 AAATAAAAATAAAAGTCTAA
1 AAATAAAAATAAAAATAAAA
49612335 AAATAAAAATAAAAATAAAA
1 AAATAAAAATAAAAATAAAA
49612355 AA
1 AA
49612357 CATATAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (20 bp):
AAATAAAAATAAAAATAAAA
Found at i:49616762 original size:31 final size:30
Alignment explanation
Indices: 49616714--49616777 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 30
49616704 ACTTAACAAG
49616714 CAAATGCCTCTAAAATAATAATAATAAATTAA
1 CAAATGCCTCTAAAATAATAA-AA-AAATTAA
*
49616746 CAAATGCCT-TAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAAAAAAATTAA
49616775 CAA
1 CAA
49616778 TAAAATAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
29 10 0.32
30 1 0.03
31 11 0.35
32 9 0.29
ACGTcount: A:0.58, C:0.14, G:0.03, T:0.25
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAAAAAAATTAA
Found at i:49626579 original size:19 final size:19
Alignment explanation
Indices: 49626555--49626592 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
49626545 TTGAGATTGC
*
49626555 CAACCTATTTGCTTGAAAT
1 CAACCTATTTGCCTGAAAT
49626574 CAACCTATTTGCCTGAAAT
1 CAACCTATTTGCCTGAAAT
49626593 TATTCATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CAACCTATTTGCCTGAAAT
Found at i:49627292 original size:31 final size:31
Alignment explanation
Indices: 49627249--49627318 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
49627239 CCTACTGAGC
*
49627249 TGGGTATCGATTTTTCGTTGGACCAAATAGT
1 TGGGCATCGATTTTTCGTTGGACCAAATAGT
49627280 TGGGCATCGATTTTTCGTTGGACCAAATAGT
1 TGGGCATCGATTTTTCGTTGGACCAAATAGT
49627311 TGGGCATC
1 TGGGCATC
49627319 CTTTTGTTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (31 bp):
TGGGCATCGATTTTTCGTTGGACCAAATAGT
Found at i:49629947 original size:21 final size:21
Alignment explanation
Indices: 49629923--49629978 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
49629913 AACAGTGGTG
* *
49629923 GTGGTGAGATTAGTTACTGTA
1 GTGGTGAGATTAGATAATGTA
*
49629944 GTGGTGAGATTGGATAATGTA
1 GTGGTGAGATTAGATAATGTA
* *
49629965 GCGATGAGATTAGA
1 GTGGTGAGATTAGA
49629979 AATAGTGGTG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.29, C:0.04, G:0.36, T:0.32
Consensus pattern (21 bp):
GTGGTGAGATTAGATAATGTA
Found at i:49630269 original size:33 final size:34
Alignment explanation
Indices: 49630202--49630269 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
49630192 AATAAAATTT
* *
49630202 AAATATTTTTAAATTATATTAATAATAAATAATA
1 AAATATATTCAAATTATATTAATAATAAATAATA
* *
49630236 AAATATATTCAAATTAT-TTTATATTAAATAATA
1 AAATATATTCAAATTATATTAATAATAAATAATA
49630269 A
1 A
49630270 TTAAACTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
33 15 0.50
34 15 0.50
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (34 bp):
AAATATATTCAAATTATATTAATAATAAATAATA
Found at i:49636474 original size:47 final size:45
Alignment explanation
Indices: 49636324--49636496 Score: 204
Period size: 46 Copynumber: 3.8 Consensus size: 45
49636314 CCGTGTCCTA
* *
49636324 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCACATCTCGAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTC-AT
* *
49636370 GCCGATGCATGTCCCAGACATTTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTC-AT
* * *
49636416 GCCGATCCATGTCCCAAACATGGTCTTATACTAGCTCTCATAAT-AT
1 GCCGATGCATGTCCCAAACAT-GTCTTACACTAGCTCTCAT-CTCAT
* * *
49636462 GGCCAATGCATGTCCCAGACACGTCTTACACTAGC
1 -GCCGATGCATGTCCCAAACATGTCTTACACTAGC
49636497 ACACAATAAC
Statistics
Matches: 109, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
46 74 0.68
47 34 0.31
48 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGCTCTCATCTCAT
Found at i:49636482 original size:93 final size:91
Alignment explanation
Indices: 49636324--49636496 Score: 231
Period size: 93 Copynumber: 1.9 Consensus size: 91
49636314 CCGTGTCCTA
* * * *
49636324 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCACATCTCGATGCCGATGCATGTCCCAGAC
1 GCCGATCCATGTCCCAAACATGTCTTACACTAGCTCACATATC-ATGCCAATGCATGTCCCAGAC
**
49636389 ATTTCTTACACTAGCTCTCATCTCAAT
65 ACGTCTTACACTAGCTCTCATCTCAAT
* *
49636416 GCCGATCCATGTCCCAAACATGGTCTTATACTAGCTCTCATAAT-ATGGCCAATGCATGTCCCAG
1 GCCGATCCATGTCCCAAACAT-GTCTTACACTAGCTCACAT-ATCAT-GCCAATGCATGTCCCAG
49636480 ACACGTCTTACACTAGC
63 ACACGTCTTACACTAGC
49636497 ACACAATAAC
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
92 22 0.31
93 47 0.67
94 1 0.01
ACGTcount: A:0.25, C:0.32, G:0.16, T:0.27
Consensus pattern (91 bp):
GCCGATCCATGTCCCAAACATGTCTTACACTAGCTCACATATCATGCCAATGCATGTCCCAGACA
CGTCTTACACTAGCTCTCATCTCAAT
Found at i:49641497 original size:46 final size:46
Alignment explanation
Indices: 49641430--49641774 Score: 406
Period size: 46 Copynumber: 7.5 Consensus size: 46
49641420 TTCTGAAATG
* *
49641430 AAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACATGATATA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
* * * *
49641476 AAATGTGTAAGACCATGGTTGAAAGACACCATGGCAACATTATATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
* * *
49641522 AAATGTGTAAGGCCATGGTTGAAAGATACCATGGCAACAGGATATA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
* * *
49641568 AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATAT-A
* **
49641615 AAA-GAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT-GG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
* * ** * * *
49641659 GAATGAATAAGACCATGGTTGAAAGATACCATGGCAATGTAACATG
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
** * * * *
49641705 AAATGAACAAGGCCATGGTTGAAAGATACCATGGCAACCTGACAGA
1 AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
*
49641751 AAATGAGTAAGACCATAGTTGAAA
1 AAATGAGTAAGACCATGGTTGAAA
49641775 TACACTATGG
Statistics
Matches: 259, Mismatches: 37, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
44 2 0.01
45 35 0.14
46 218 0.84
47 4 0.02
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (46 bp):
AAATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGATATA
Found at i:49641584 original size:92 final size:92
Alignment explanation
Indices: 49641427--49641786 Score: 452
Period size: 92 Copynumber: 3.9 Consensus size: 92
49641417 GCTTTCTGAA
** * * *
49641427 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGTAACATGATATAAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGAGTAAGACCAT
* * *
49641492 GGTTGAAAGACACCATGGCAACATTAT
66 GGTTGAAAGACACCATGGCAACGTAAC
** * * * *
49641519 ATGAAATGTGTAAGGCCATGGTTGAAAGATACCATGGCAACAGGATATAAAATGTGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGAGTAAGACCAT
* *
49641584 GGTTGAAAGATACCATGGCAACGTGAC
66 GGTTGAAAGACACCATGGCAACGTAAC
* ** *
49641611 ATGAAAAGAATAAGACCATGGTTGAAAGATACCATGGCAACATGAT-GGGAATGAATAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGAGTAAGACCAT
* *
49641675 GGTTGAAAGATACCATGGCAATGTAAC
66 GGTTGAAAGACACCATGGCAACGTAAC
* * * *
49641702 ATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGTAAGACCAT
1 ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGAGTAAGACCAT
* * *
49641767 AGTTGAAATACACTATGGCA
66 GGTTGAAAGACACCATGGCA
49641787 TCATGTCGAA
Statistics
Matches: 236, Mismatches: 31, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
91 79 0.33
92 157 0.67
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (92 bp):
ATGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGAGTAAGACCAT
GGTTGAAAGACACCATGGCAACGTAAC
Found at i:49641763 original size:183 final size:184
Alignment explanation
Indices: 49641437--49641774 Score: 489
Period size: 183 Copynumber: 1.8 Consensus size: 184
49641427 ATGAAATGTG
* * **
49641437 TAAGACCATGGTTGAAAGATACCATGGTAACATGATATAAAATGTGTAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGAATAAGACCATGGTTGAAAGA
* * *** * *
49641502 CACCATGGCAACATTATATGAAATGTGTAAGGCCATGGTTGAAAGATACCATGGCAACAGGATAT
66 CACCATGGCAACATAACATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAACAGGACAG
* *
49641567 AAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
131 AAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
**
49641621 TAAGACCATGGTTGAAAGATACCATGGCAACATGAT-GGGAATGAATAAGACCATGGTTGAAAGA
1 TAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGAATAAGACCATGGTTGAAAGA
* ** **
49641685 TACCATGGCAATGTAACATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAACCTGACAG
66 CACCATGGCAACATAACATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAACAGGACAG
49641750 AAAATGAGTAAGACCATAGTTGAAA
131 AAAATGAGTAAGACCATAGTTGAAA
49641775 TACACTATGG
Statistics
Matches: 134, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
183 99 0.74
184 35 0.26
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.21
Consensus pattern (184 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACATGATAGAAAATGAATAAGACCATGGTTGAAAGA
CACCATGGCAACATAACATGAAATGAACAAGGCCATGGTTGAAAGATACCATGGCAACAGGACAG
AAAATGAGTAAGACCATAGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
Found at i:49641805 original size:137 final size:136
Alignment explanation
Indices: 49641438--49641809 Score: 424
Period size: 137 Copynumber: 2.7 Consensus size: 136
49641428 TGAAATGTGT
* * * *
49641438 AAGACCATGGTTGAAAGATACCATGGTAACATGATATAAAATGTGTAAGACCATGGTTGAAAGAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATGGTTGAAAGAC
* * ** * * *
49641503 ACCATGGCAACATTATATGAAATGTGTAAGGCCATGGTTGAAAGATACCATGGCAACAGGATATA
66 ACCATGGCAACA-TGT-CGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACAGAACATA
***
49641568 AAATGTGT
129 AAATGAAC
* *
49641576 AAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAA-GAATAAGACCATGGTTGAAAGA
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAGACCATGGTTGAAAGA
* * * *
49641640 TACCATGGCAACATGATGGGAATGAATAAGACCATGGTTGAAAGATACCATGGCAA-TGTAACAT
65 CACCATGGCAACATG-TCGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACAG-AACAT
*
49641704 GAAATGAAC
128 AAAATGAAC
* * * *
49641713 AAGGCCATGGTTGAAAGATACCATGGCAACCTGACAGAAAATGAGTAAGACCATAGTTGAAATAC
1 AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATGGTTGAAAGAC
* * *
49641778 ACTATGGCATCATGTCGAAGATAAATAAGACC
66 ACCATGGCAACATGTCGAA-ATGAATAAGACC
49641810 GTGGATGGGA
Statistics
Matches: 198, Mismatches: 31, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
136 9 0.05
137 119 0.60
138 66 0.33
139 4 0.02
ACGTcount: A:0.41, C:0.15, G:0.23, T:0.21
Consensus pattern (136 bp):
AAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAGACCATGGTTGAAAGAC
ACCATGGCAACATGTCGAAATGAATAAGACCATGGTTGAAAGATACCATGGCAACAGAACATAAA
ATGAAC
Found at i:49645350 original size:17 final size:18
Alignment explanation
Indices: 49645314--49645360 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 18
49645304 TAAAACAAAT
* *
49645314 AAAAGAAATAGAATGAAG
1 AAAAGAAACAGAAAGAAG
49645332 AAAAGAAACA-AAAGAAG
1 AAAAGAAACAGAAAGAAG
49645349 -AAAGAAA-AGAAA
1 AAAAGAAACAGAAA
49645361 ACAGAAAGCA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 1 0.04
16 10 0.38
17 6 0.23
18 9 0.35
ACGTcount: A:0.74, C:0.02, G:0.19, T:0.04
Consensus pattern (18 bp):
AAAAGAAACAGAAAGAAG
Found at i:49645639 original size:31 final size:31
Alignment explanation
Indices: 49645595--49645668 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
49645585 TTTAATTGAA
*
49645595 TGAAAT-TTAAGTTAGAATAGATAAAGGGAT
1 TGAAATGTAAAGTTAGAATAGATAAAGGGAT
*
49645625 TGAAATGTAAAGTTAGAGTAGATAAAGGGAT
1 TGAAATGTAAAGTTAGAATAGATAAAGGGAT
49645656 TGAAATGTAAAGT
1 TGAAATGTAAAGT
49645669 AAGCTATAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
30 6 0.15
31 35 0.85
ACGTcount: A:0.46, C:0.00, G:0.26, T:0.28
Consensus pattern (31 bp):
TGAAATGTAAAGTTAGAATAGATAAAGGGAT
Found at i:49646960 original size:21 final size:21
Alignment explanation
Indices: 49646899--49646970 Score: 54
Period size: 21 Copynumber: 3.3 Consensus size: 21
49646889 CAAGCACTTT
49646899 ATGTGTCGTATTTCAGGCACCTC
1 ATGTGTCGT-TTT-AGGCACCTC
** * * * *
49646922 GCGTGCCGTATCAAGCACCTC
1 ATGTGTCGTTTTAGGCACCTC
* *
49646943 ATGTGTCGTTTTAGGCACTTT
1 ATGTGTCGTTTTAGGCACCTC
49646964 ATGTGTC
1 ATGTGTC
49646971 TTATACTGAT
Statistics
Matches: 35, Mismatches: 14, Indels: 2
0.69 0.27 0.04
Matches are distributed among these distances:
21 28 0.80
22 1 0.03
23 6 0.17
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.35
Consensus pattern (21 bp):
ATGTGTCGTTTTAGGCACCTC
Found at i:49653889 original size:49 final size:50
Alignment explanation
Indices: 49653824--49653951 Score: 156
Period size: 50 Copynumber: 2.6 Consensus size: 50
49653814 CATCAAGTCA
* * *
49653824 ATGCCATGTCCTAGACATGGTCTTACA-TTGAC-CATTA-AAAT-CGAGGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAG-CTC-TCACAAATCCG-GGCCG
* *
49653873 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATATCCGTGCCG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAAATCCGGGCCG
49653923 ATGCCATGTCCCAGACATGGTCTTACACT
1 ATGCCATGTCCCAGACATGGTCTTACACT
49653952 TACACATCTT
Statistics
Matches: 70, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
49 29 0.41
50 39 0.56
51 2 0.03
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.27
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACAAATCCGGGCCG
Found at i:49654045 original size:46 final size:47
Alignment explanation
Indices: 49653864--49654089 Score: 196
Period size: 46 Copynumber: 4.8 Consensus size: 47
49653854 ACCATTAAAA
*
49653864 TCGAGGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCACATA
1 TCGAGGCCGATGCCATGTCCCAGACAT-GTCTTACACTAG--CTCACATC
*
49653914 TCCG-TGCCGATGCCATGTCCCAGACATGGTCTTACACT---TACACATC
1 T-CGAGGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCT-CACATC
* * * * * *
49653960 T-TATAGCTGATG-CATGTCCTAGACATGTCTCACAGTAGCTCACATC
1 TCGA-GGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATC
* * * *
49654006 TCGAGGGCGATG-CATGTCCCAGACATGTCTTATACTAGCTCTCGTC
1 TCGAGGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATC
* * *
49654052 TCAACGCCGATGCCATGTCCCAGATATGATCTTACACT
1 TCGAGGCCGATGCCATGTCCCAGACATG-TCTTACACT
49654090 GGCTTTCATT
Statistics
Matches: 143, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 8 0.06
45 14 0.10
46 61 0.43
47 16 0.11
48 8 0.06
50 34 0.24
51 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (47 bp):
TCGAGGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTCACATC
Found at i:49659889 original size:3 final size:3
Alignment explanation
Indices: 49659881--49659918 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
49659871 AGTAAAAAGA
49659881 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
49659919 AGCTATAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:49659945 original size:15 final size:16
Alignment explanation
Indices: 49659881--49659950 Score: 76
Period size: 15 Copynumber: 4.5 Consensus size: 16
49659871 AGTAAAAAGA
49659881 TATTATT-ATTATTAT
1 TATTATTAATTATTAT
49659896 TATTATT-ATTATTAT
1 TATTATTAATTATTAT
* *
49659911 TATTATTAAGCTATAGAT
1 TATTATTAA-TTAT-TAT
49659929 TA-TATTAATTATTAT
1 TATTATTAATTATTAT
49659944 TA-TATTA
1 TATTATTA
49659951 TGAAATAAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
15 31 0.65
16 4 0.08
17 9 0.19
18 4 0.08
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.59
Consensus pattern (16 bp):
TATTATTAATTATTAT
Found at i:49660085 original size:31 final size:32
Alignment explanation
Indices: 49660028--49660088 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 32
49660018 ACATTTGTAT
49660028 TATTTATGTATAATTAGTGAAAATATATTTTA
1 TATTTATGTATAATTAGTGAAAATATATTTTA
49660060 TATTTAT-TATTAATTAGT-AAAATATATTT
1 TATTTATGTA-TAATTAGTGAAAATATATTT
49660089 ATTAGATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
31 13 0.46
32 15 0.54
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (32 bp):
TATTTATGTATAATTAGTGAAAATATATTTTA
Found at i:49660102 original size:32 final size:33
Alignment explanation
Indices: 49660038--49660122 Score: 90
Period size: 31 Copynumber: 2.7 Consensus size: 33
49660028 TATTTATGTA
* *
49660038 TAATTAGTGAAAATATA-TT-TTATATTTATTAT
1 TAATTAGT-AAAATATATTTATTAGATGTATTAT
49660070 TAATTAGTAAAATATATTTATTAGATGT-TTAT
1 TAATTAGTAAAATATATTTATTAGATGTATTAT
* *
49660102 T-ATTATTAAAAT-TATTCATTA
1 TAATTAGTAAAATATATTTATTA
49660123 TATTATATTA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
30 8 0.17
31 18 0.38
32 15 0.32
33 6 0.13
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.52
Consensus pattern (33 bp):
TAATTAGTAAAATATATTTATTAGATGTATTAT
Found at i:49664769 original size:24 final size:24
Alignment explanation
Indices: 49664736--49664809 Score: 121
Period size: 24 Copynumber: 3.1 Consensus size: 24
49664726 AAGTCTGTCT
*
49664736 GGAGAAGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
49664760 GGAGAGGATTTAGGAGCTGATCAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
49664784 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
49664808 GG
1 GG
49664810 TGAACTGTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.31, C:0.05, G:0.42, T:0.22
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:49665904 original size:27 final size:27
Alignment explanation
Indices: 49665855--49665960 Score: 101
Period size: 27 Copynumber: 3.9 Consensus size: 27
49665845 NNGAAGCGTC
* *
49665855 CTGGT-GCTATGCCACAAATTATCTGAT
1 CTGGTGGCTCTGCCAC-CATTATCTGAT
*
49665882 CTGGTGGCTCTGCC-CCATATATCTGTT
1 CTGGTGGCTCTGCCACCAT-TATCTGAT
* *
49665909 CTGGTGGCTCTGCCACGATTATCTATAT
1 CTGGTGGCTCTGCCACCATTATCT-GAT
* *
49665937 CTGGTGACTCTGTCA-CATTATCTG
1 CTGGTGGCTCTGCCACCATTATCTG
49665961 TTCAGGCATC
Statistics
Matches: 65, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
26 2 0.03
27 39 0.60
28 24 0.37
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACCATTATCTGAT
Found at i:49665959 original size:54 final size:54
Alignment explanation
Indices: 49665855--49665963 Score: 132
Period size: 55 Copynumber: 2.0 Consensus size: 54
49665845 NNGAAGCGTC
* *
49665855 CTGGTGCTATGCCACAAATTATCTGATCTGGTGGCTCTGCCCCATATATCTGTT
1 CTGGTGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
49665909 CTGGTGGCTCTGCCAC-GATTATCTATATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGT-GCTATGCCACAAATTATCT-GATCTGGTGACTCTGCCACATATATCTGTT
49665963 C
1 C
49665964 AGGCATCCAT
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
54 21 0.45
55 26 0.55
ACGTcount: A:0.17, C:0.26, G:0.20, T:0.37
Consensus pattern (54 bp):
CTGGTGCTATGCCACAAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:49670341 original size:3 final size:3
Alignment explanation
Indices: 49670333--49670361 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
49670323 AGTAAAAAGA
49670333 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
49670362 AGATATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:49670388 original size:15 final size:16
Alignment explanation
Indices: 49670333--49670393 Score: 65
Period size: 15 Copynumber: 3.9 Consensus size: 16
49670323 AGTAAAAAGA
49670333 TATTATTATTATT-AT
1 TATTATTATTATTAAT
*
49670348 TATTATTATTATTAAGA
1 TATTATTATTATTAA-T
*
49670365 TATAAATTA-TATTAAT
1 TAT-TATTATTATTAAT
49670381 TATTATTA-TATTA
1 TATTATTATTATTA
49670394 TGAAATAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
15 22 0.56
16 4 0.10
17 9 0.23
18 4 0.10
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (16 bp):
TATTATTATTATTAAT
Found at i:49670507 original size:32 final size:31
Alignment explanation
Indices: 49670471--49670531 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 31
49670461 ACATTTGTAT
*
49670471 TATTTATGTA-TAATTAGTGAAAATATATTTTA
1 TATTTAT-TATTAATTAGT-AAAAGATATTTTA
49670503 TATTTATTATTAATTAGTAAAAGATATTT
1 TATTTATTATTAATTAGTAAAAGATATTT
49670532 ATTAGATCAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 12 0.44
32 15 0.56
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (31 bp):
TATTTATTATTAATTAGTAAAAGATATTTTA
Found at i:49671145 original size:41 final size:41
Alignment explanation
Indices: 49671098--49671202 Score: 165
Period size: 41 Copynumber: 2.6 Consensus size: 41
49671088 CAACCTCGAG
** **
49671098 TCGATGAGACACTGGGTGTCACTATTTTACTTCAGATAGAT
1 TCGATGAGGTACTGGGTACCACTATTTTACTTCAGATAGAT
*
49671139 TCGATGAGGTACTGGGTACCACTATTTTACTTCGGATAGAT
1 TCGATGAGGTACTGGGTACCACTATTTTACTTCAGATAGAT
49671180 TCGATGAGGTACTGGGTACCACT
1 TCGATGAGGTACTGGGTACCACT
49671203 TTACTTAGGC
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (41 bp):
TCGATGAGGTACTGGGTACCACTATTTTACTTCAGATAGAT
Found at i:49679773 original size:17 final size:17
Alignment explanation
Indices: 49679738--49679775 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
49679728 AATTGAATAT
* *
49679738 AAAAATTAATTAAATCG
1 AAAAATTAAATAAAACG
49679755 AAAAATTAAATAAAACG
1 AAAAATTAAATAAAACG
49679772 AAAA
1 AAAA
49679776 GATTCAGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.68, C:0.05, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAAATTAAATAAAACG
Found at i:49680135 original size:31 final size:31
Alignment explanation
Indices: 49680098--49680159 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
49680088 ACAAAAAAGG
49680098 AAACAAAGCTTATGTGGCATAGTTTATACCC
1 AAACAAAGCTTATGTGGCATAGTTTATACCC
49680129 AAACAAAGCTTATGTGGCATAGTTTATACCC
1 AAACAAAGCTTATGTGGCATAGTTTATACCC
49680160 TATCATTTGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (31 bp):
AAACAAAGCTTATGTGGCATAGTTTATACCC
Found at i:49683852 original size:39 final size:39
Alignment explanation
Indices: 49683789--49683865 Score: 102
Period size: 39 Copynumber: 2.0 Consensus size: 39
49683779 CTACACTGAT
* *
49683789 ACTGATACTGTAATGGGCTAAGGCCCTA-ACTGAAATTGA
1 ACTGATACTGAAATAGGCTAAGGCCC-AGACTGAAATTGA
* *
49683828 ACTGTTACTGAAATAGGCTTAGGCCCAGACTGAAATTG
1 ACTGATACTGAAATAGGCTAAGGCCCAGACTGAAATTG
49683866 TCTAGTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (39 bp):
ACTGATACTGAAATAGGCTAAGGCCCAGACTGAAATTGA
Found at i:49685565 original size:27 final size:27
Alignment explanation
Indices: 49685535--49685712 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49685525 ATATTGAGTC
* * * *
49685535 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
49685562 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49685589 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
49685617 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
49685644 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
49685671 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
49685698 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
49685713 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:49685674 original size:82 final size:81
Alignment explanation
Indices: 49685556--49685711 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49685546 TGCTATATAA
* *
49685556 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
49685621 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
49685638 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
49685702 CACTTAGTGC
65 CACTTAGTGC
49685712 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:49690295 original size:56 final size:56
Alignment explanation
Indices: 49690209--49690440 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
49690199 ACAAGGGATG
49690209 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49690265 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49690321 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
* *
49690377 ATGGGCAAAACATGTCATCAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
49690433 ATGGGCAA
1 ATGGGCAA
49690441 TAAACTAATA
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.46, C:0.09, G:0.22, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:49697348 original size:13 final size:13
Alignment explanation
Indices: 49697330--49697354 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49697320 AATGAAGACA
49697330 GACACGGCCGTGC
1 GACACGGCCGTGC
49697343 GACACGGCCGTG
1 GACACGGCCGTG
49697355 TGCACCCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.08
Consensus pattern (13 bp):
GACACGGCCGTGC
Found at i:49697559 original size:23 final size:23
Alignment explanation
Indices: 49697529--49697576 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
49697519 CAAAATCCCT
49697529 AACCCTAGCCGTTGCAAGTCCAC
1 AACCCTAGCCGTTGCAAGTCCAC
49697552 AACCCTAGCCGTTGCAAGTCCAC
1 AACCCTAGCCGTTGCAAGTCCAC
49697575 AA
1 AA
49697577 GGCCTCCCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.38, G:0.17, T:0.17
Consensus pattern (23 bp):
AACCCTAGCCGTTGCAAGTCCAC
Found at i:49704942 original size:37 final size:37
Alignment explanation
Indices: 49704892--49704970 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
49704882 TTATTACGAA
* * *
49704892 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
49704929 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
49704966 GTCTT
1 GTCTT
49704971 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:49705215 original size:47 final size:47
Alignment explanation
Indices: 49705089--49705550 Score: 773
Period size: 47 Copynumber: 9.7 Consensus size: 47
49705079 CCCTTCGGGA
* * * * * *
49705089 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCAGCC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCA-TTAGGC
* * **
49705137 CTGTCA-CATATATATACACTTCCACATTCATCACATCGGCCATTCCGC
1 CT-T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49705185 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49705232 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49705279 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49705326 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49705375 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49705422 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49705469 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49705516 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
49705551 AGAATCCTAA
Statistics
Matches: 393, Mismatches: 16, Indels: 11
0.94 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 308 0.78
48 6 0.02
49 77 0.20
50 1 0.00
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49705412 original size:190 final size:190
Alignment explanation
Indices: 49705089--49705550 Score: 802
Period size: 190 Copynumber: 2.4 Consensus size: 190
49705079 CCCTTCGGGA
* * * * * * * *
49705089 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCAGCCCTGTCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
* *
49705154 ACTTCCACATTCATCACATCGGCCATTCCGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
49705219 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
49705279 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
*
49705344 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
66 ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
49705409 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
49705469 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
49705532 ACTTTCACATTCATCACAT
66 ACTTTCACATTCATCACAT
49705551 AGAATCCTAA
Statistics
Matches: 260, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
188 27 0.10
190 233 0.90
ACGTcount: A:0.30, C:0.31, G:0.08, T:0.32
Consensus pattern (190 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTACGCCTTATCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:49707719 original size:40 final size:40
Alignment explanation
Indices: 49707605--49707721 Score: 171
Period size: 40 Copynumber: 2.9 Consensus size: 40
49707595 TTTCTTCCTG
* * *
49707605 TAGCACAAATGCTCTTCGAGACTTAGCCCGGACATAACAC
1 TAGCACGAATGCTCTTCGAGACTTAGCCCGGATATATCAC
*
49707645 CAGCACGAATGCTCTTCGAGACTTAGCCCGGATATATCAC
1 TAGCACGAATGCTCTTCGAGACTTAGCCCGGATATATCAC
* * *
49707685 TAGCACGAATGCTATTCGGGACTTAGCCCAGATATAT
1 TAGCACGAATGCTCTTCGAGACTTAGCCCGGATATAT
49707722 ATAACTCTCG
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 69 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
TAGCACGAATGCTCTTCGAGACTTAGCCCGGATATATCAC
Found at i:49723021 original size:168 final size:168
Alignment explanation
Indices: 49722743--49723081 Score: 642
Period size: 168 Copynumber: 2.0 Consensus size: 168
49722733 TAATCATGTG
49722743 CATTACTAATTCATGTGTAATCCACTATAATATCTTTAATCATTTTCGAACATCAAAGACATTTC
1 CATTACTAATTCATGTGTAATCCACTATAATATCTTTAATCATTTTCGAACATCAAAGACATTTC
*
49722808 ATAGCATACCTGATCCGAATGATCAAAAACCAATCCAAATCAATATGCCTAGCCATTTTAACCCA
66 ATAGCATACCTAATCCGAATGATCAAAAACCAATCCAAATCAATATGCCTAGCCATTTTAACCCA
*
49722873 TCTCAAGACTATGTGCATAAGACCATATTAATTTAAAC
131 TCTCAAGACTATATGCATAAGACCATATTAATTTAAAC
*
49722911 CATTACTAATTCATGTGTAATCCACTATAATATCTTTAATCATTTTTGAACATCAAAGACATTTC
1 CATTACTAATTCATGTGTAATCCACTATAATATCTTTAATCATTTTCGAACATCAAAGACATTTC
*
49722976 ATAGCATACCTAATCTGAATGATCAAAAACCAATCCAAATCAATATGCCTAGCCATTTTAACCCA
66 ATAGCATACCTAATCCGAATGATCAAAAACCAATCCAAATCAATATGCCTAGCCATTTTAACCCA
49723041 TCTCAAGACTATATGCATAAGACCATATTAATTTAAAC
131 TCTCAAGACTATATGCATAAGACCATATTAATTTAAAC
49723079 CAT
1 CAT
49723082 ATAGTTCTCA
Statistics
Matches: 167, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
168 167 1.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.32
Consensus pattern (168 bp):
CATTACTAATTCATGTGTAATCCACTATAATATCTTTAATCATTTTCGAACATCAAAGACATTTC
ATAGCATACCTAATCCGAATGATCAAAAACCAATCCAAATCAATATGCCTAGCCATTTTAACCCA
TCTCAAGACTATATGCATAAGACCATATTAATTTAAAC
Found at i:49724432 original size:56 final size:57
Alignment explanation
Indices: 49724293--49724459 Score: 237
Period size: 56 Copynumber: 2.9 Consensus size: 57
49724283 TTACATGTAA
** * * * *
49724293 TCACATATCGATGCCAACGTGCTAGACATGGTCTTACTCTCACACATATATCGAAAT
1 TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGAAAG
* * * *
49724350 TTAGATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACTTATATCG-GAG
1 TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGAAAG
49724406 TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
1 TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGA
49724460 TGCCATGGTC
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
56 51 0.53
57 45 0.47
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.29
Consensus pattern (57 bp):
TCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACATATATCGAAAG
Found at i:49731932 original size:10 final size:10
Alignment explanation
Indices: 49731917--49731944 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
49731907 ACTCAAAACT
49731917 CTTGAAGGAA
1 CTTGAAGGAA
49731927 CTTGAAGGAA
1 CTTGAAGGAA
49731937 CTTGAAGG
1 CTTGAAGG
49731945 GAGATCTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21
Consensus pattern (10 bp):
CTTGAAGGAA
Found at i:49741186 original size:13 final size:13
Alignment explanation
Indices: 49741168--49741193 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
49741158 GAAGTAATCG
49741168 TACACGGGCGTGT
1 TACACGGGCGTGT
49741181 TACACGGGCGTGT
1 TACACGGGCGTGT
49741194 CCCTGTCGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.38, T:0.23
Consensus pattern (13 bp):
TACACGGGCGTGT
Found at i:49747549 original size:30 final size:28
Alignment explanation
Indices: 49747496--49747551 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
49747486 TTCTTCCACG
* *
49747496 CTTTCTTTTTGCTCACTCTCTTTTTCAA
1 CTTTCTTTTTGCACACACTCTTTTTCAA
49747524 CTTTACTTTCTTGCACACACTCTTTTTC
1 CTTT-CTTT-TTGCACACACTCTTTTTC
49747552 TTTTTCGCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 16 0.67
ACGTcount: A:0.12, C:0.30, G:0.04, T:0.54
Consensus pattern (28 bp):
CTTTCTTTTTGCACACACTCTTTTTCAA
Found at i:49752413 original size:68 final size:68
Alignment explanation
Indices: 49752304--49752443 Score: 244
Period size: 68 Copynumber: 2.1 Consensus size: 68
49752294 TTCGCCTTAT
*
49752304 TTCTCTTAGATTTCTGCGAACTGTGCGATCAATCTCACTATCAAACAGTAATGGTCCTGACAGGT
1 TTCTCTTAGATTTCTGCGAACTGTGCGATCAATCTCACTATCAAACAGTAATAGTCCTGACAGGT
49752369 TTC
66 TTC
* * *
49752372 TTCTCTTCGGTTTCTGCGAACTGTGCGATCAATCTCACTATCAAACAGTAATAGTCCTGACGGGT
1 TTCTCTTAGATTTCTGCGAACTGTGCGATCAATCTCACTATCAAACAGTAATAGTCCTGACAGGT
49752437 TTC
66 TTC
49752440 TTCT
1 TTCT
49752444 GGTCATAAAC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (68 bp):
TTCTCTTAGATTTCTGCGAACTGTGCGATCAATCTCACTATCAAACAGTAATAGTCCTGACAGGT
TTC
Found at i:49754733 original size:289 final size:290
Alignment explanation
Indices: 49754204--49754783 Score: 1090
Period size: 289 Copynumber: 2.0 Consensus size: 290
49754194 TGTATAGATA
* *
49754204 TACTTCTGAGAGATATCTTTGCTGTACTATGAAAGAATAAGATGTGTATTGTCTAGTAAGATCTA
1 TACTTCTGAGAGATATCTTTGCTGTACTATGAAAGAATAAGATATGTATTCTCTAGTAAGATCTA
*
49754269 GAGTTAGTCAAAAAGTGAAGTGAGAATTGGTACGTTAAGTATGGTAGCTGGCACATAGGTATATA
66 GAGTTAGTCAAAAAGTGAAGTGAGAATTGGTACGTGAAGTATGGTAGCTGGCACATAGG-ATATA
49754334 TATCAGGTATTATGAAAGTACTGCCAAAGATAGAGATGTGATCCATAATTTGCAAGATGAGGAAT
130 TATCAGGTATTATGAAAGTACTGCCAAAGATAGAGATGTGATCCATAATTTGCAAGATGAGGAAT
49754399 TCAACTAAAAAGGTTCTAAGGTATTCTGTGCTAACAACTCACTCACTAAGTTCGCGTGAACTTAC
195 TCAACTAAAAAGGTTCTAAGGTATTCTGTGCTAACAACTCACTCACTAAGTTCGCGTGAACTTAC
49754464 AAAGTGTTTGTTCTTGTTTCAGGTTTTGCTG
260 AAAGTGTTTGTTCTTGTTTCAGGTTTTGCTG
* *
49754495 TACTTCTGAGAGATATCTTTGTTGTATTATGAAAGAATAAGATATGTATTCTCTAGTAAGATCTA
1 TACTTCTGAGAGATATCTTTGCTGTACTATGAAAGAATAAGATATGTATTCTCTAGTAAGATCTA
*
49754560 GAGTTAGTCAAAAAGTGAAGTGAGAGTTGGTACGTGAAGTATGGTAGCTGGCACATAGG-TATAT
66 GAGTTAGTCAAAAAGTGAAGTGAGAATTGGTACGTGAAGTATGGTAGCTGGCACATAGGATATAT
49754624 ATCAGGTATTATGAAAGTACTGCCAAAGATAGAGATGTGATCCATAATTTGCAAGATGAGGAATT
131 ATCAGGTATTATGAAAGTACTGCCAAAGATAGAGATGTGATCCATAATTTGCAAGATGAGGAATT
49754689 CAACTAAAAAGGTTCTAAGGTATTCTGTGCTAACAACTCACTCACTAAGTTCGCGTGAACTTACA
196 CAACTAAAAAGGTTCTAAGGTATTCTGTGCTAACAACTCACTCACTAAGTTCGCGTGAACTTACA
49754754 AAGTGTTTGTTCTTGTTTCAGGTTTTGCTG
261 AAGTGTTTGTTCTTGTTTCAGGTTTTGCTG
49754784 CTAGAGTAAG
Statistics
Matches: 283, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
289 165 0.58
291 118 0.42
ACGTcount: A:0.32, C:0.13, G:0.22, T:0.33
Consensus pattern (290 bp):
TACTTCTGAGAGATATCTTTGCTGTACTATGAAAGAATAAGATATGTATTCTCTAGTAAGATCTA
GAGTTAGTCAAAAAGTGAAGTGAGAATTGGTACGTGAAGTATGGTAGCTGGCACATAGGATATAT
ATCAGGTATTATGAAAGTACTGCCAAAGATAGAGATGTGATCCATAATTTGCAAGATGAGGAATT
CAACTAAAAAGGTTCTAAGGTATTCTGTGCTAACAACTCACTCACTAAGTTCGCGTGAACTTACA
AAGTGTTTGTTCTTGTTTCAGGTTTTGCTG
Found at i:49760785 original size:4 final size:4
Alignment explanation
Indices: 49760776--49760800 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
49760766 TTCTTAAAAT
49760776 ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA ATTA ATTA ATTA ATTA ATTA A
49760801 ATAACTAGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (4 bp):
ATTA
Found at i:49762382 original size:47 final size:47
Alignment explanation
Indices: 49762247--49762420 Score: 162
Period size: 45 Copynumber: 3.8 Consensus size: 47
49762237 CTATACCCCT
* * *
49762247 AAAAATGAGTAAGACCATAGTTGAAAGATGTTTTGGCGTGATGAT--
1 AAAAATGAGTAAGACCATAGTTGAAAGATGCTATGGCGTCATGATAA
* * * * * *
49762292 AAAAATGAGTAAGATCATAGCTAAAAGATGAC-ATTGAGCCATGATAA
1 AAAAATGAGTAAGACCATAGTTGAAAGATG-CTATGGCGTCATGATAA
*
49762339 AAAAATAAGTAAGACCATCA-TTGAAAGATGCTATGGCGTCATGAT-A
1 AAAAATGAGTAAGACCAT-AGTTGAAAGATGCTATGGCGTCATGATAA
* * * *
49762385 AAAAA-GAGTAAAACCATAGCTGAAAGACGTTATGGC
1 AAAAATGAGTAAGACCATAGTTGAAAGATGCTATGGC
49762421 ATCAAATTAA
Statistics
Matches: 102, Mismatches: 21, Indels: 12
0.76 0.16 0.09
Matches are distributed among these distances:
44 1 0.01
45 59 0.58
46 7 0.07
47 34 0.33
48 1 0.01
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (47 bp):
AAAAATGAGTAAGACCATAGTTGAAAGATGCTATGGCGTCATGATAA
Found at i:49764379 original size:46 final size:46
Alignment explanation
Indices: 49764319--49764730 Score: 736
Period size: 46 Copynumber: 9.0 Consensus size: 46
49764309 TTTGACATGA
* * * * * *
49764319 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *
49764365 TGCCATGGTATCTTTCAACCATGGTCTTATACATTTCATATCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
49764411 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
49764457 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
49764503 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
49764549 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
49764595 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
49764641 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
49764687 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
49764731 AGAGCACACT
Statistics
Matches: 357, Mismatches: 8, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
45 4 0.01
46 353 0.99
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:49770987 original size:45 final size:45
Alignment explanation
Indices: 49770925--49771110 Score: 246
Period size: 45 Copynumber: 4.1 Consensus size: 45
49770915 CTATATGCCT
* ** *
49770925 AAAATGAGTATGACCATAGGTGAAAGATGCTATGGCATCATAATA
1 AAAATGAGTAAGACCATAACTGAAAGATGCTATGGCATCATGATA
* *
49770970 AAAATAAGTAAGACCATAGCTGAAAGATGCTATGGCATCATGATA
1 AAAATGAGTAAGACCATAACTGAAAGATGCTATGGCATCATGATA
* ** *
49771015 AAAATGAGTAAGACTATAACTGAAAGATGCTATGGTGTCATGATC
1 AAAATGAGTAAGACCATAACTGAAAGATGCTATGGCATCATGATA
* ** *
49771060 AAAATGAGTAAGACCATAACTGAAAGGTGCTATGGTGTCATGATC
1 AAAATGAGTAAGACCATAACTGAAAGATGCTATGGCATCATGATA
49771105 AAAATG
1 AAAATG
49771111 CCTTAGTACC
Statistics
Matches: 129, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 129 1.00
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.24
Consensus pattern (45 bp):
AAAATGAGTAAGACCATAACTGAAAGATGCTATGGCATCATGATA
Found at i:49778502 original size:27 final size:27
Alignment explanation
Indices: 49778471--49778648 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49778461 TAAATTGTAC
49778471 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49778498 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49778524 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49778552 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49778580 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49778607 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49778634 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49778649 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49778585 original size:82 final size:81
Alignment explanation
Indices: 49778472--49778627 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49778462 AAATTGTACA
* *
49778472 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
49778536 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49778553 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
49778618 TGCGAGTTGA
65 TGCGAATTGA
49778628 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49778639 original size:82 final size:81
Alignment explanation
Indices: 49778468--49778648 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
49778458 GATTAAATTG
* *
49778468 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49778533 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49778549 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
49778613 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49778631 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49778649 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49782434 original size:27 final size:27
Alignment explanation
Indices: 49782403--49782580 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
49782393 TAAATTGTAC
49782403 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49782430 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49782456 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49782484 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49782512 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
49782539 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49782566 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49782581 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49782464 original size:54 final size:55
Alignment explanation
Indices: 49782403--49782580 Score: 218
Period size: 54 Copynumber: 3.3 Consensus size: 55
49782393 TAAATTGTAC
* *
49782403 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAATTGAATATGAT
* * * * *
49782458 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGA-ATTGAATATGAT
* * * *
49782512 AGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAATTGAATATGAT
*
49782566 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49782581 GGCTCAATAT
Statistics
Matches: 105, Mismatches: 15, Indels: 7
0.83 0.12 0.06
Matches are distributed among these distances:
54 61 0.58
55 44 0.42
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAATTGAATATGAT
Found at i:49782517 original size:82 final size:81
Alignment explanation
Indices: 49782404--49782559 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49782394 AAATTGTACA
* *
49782404 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
49782468 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49782485 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
49782550 TGCGAGTTGA
65 TGCGAATTGA
49782560 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49782571 original size:82 final size:81
Alignment explanation
Indices: 49782400--49782580 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
49782390 GATTAAATTG
* *
49782400 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49782465 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49782481 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
49782545 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49782563 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49782581 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49790498 original size:27 final size:27
Alignment explanation
Indices: 49790467--49790644 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
49790457 TAAATTGTAC
49790467 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
49790494 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49790520 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
49790548 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
49790576 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
49790603 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
49790630 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
49790645 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:49790581 original size:82 final size:81
Alignment explanation
Indices: 49790468--49790623 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
49790458 AAATTGTACA
* *
49790468 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
49790532 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
49790549 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
49790614 TGCGAGTTGA
65 TGCGAATTGA
49790624 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:49790635 original size:82 final size:81
Alignment explanation
Indices: 49790464--49790644 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
49790454 GATTAAATTG
* *
49790464 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
49790529 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
49790545 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
49790609 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
49790627 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
49790645 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:49798829 original size:18 final size:18
Alignment explanation
Indices: 49798806--49798860 Score: 74
Period size: 18 Copynumber: 3.1 Consensus size: 18
49798796 CTTGGCCTAT
49798806 TGCAGTAATAGTAAACAG
1 TGCAGTAATAGTAAACAG
*
49798824 TGCAGTAATAGTAATCAG
1 TGCAGTAATAGTAAACAG
* * *
49798842 TGTAGTAACAGTAAGCAG
1 TGCAGTAATAGTAAACAG
49798860 T
1 T
49798861 ATGCAAGTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (18 bp):
TGCAGTAATAGTAAACAG
Found at i:49799266 original size:27 final size:27
Alignment explanation
Indices: 49799196--49799302 Score: 110
Period size: 27 Copynumber: 4.0 Consensus size: 27
49799186 CATCACCTAG
* ** *
49799196 GGGCAAAACAGTCATCCTACCATATAA
1 GGGCAAAATAGTCATTTTACCTTATAA
49799223 GGGCAAAATAGTCATTTTACCTTATAA
1 GGGCAAAATAGTCATTTTACCTTATAA
* * * *
49799250 GGGAAAAACT-GTTATTTTA-ATATGTAA
1 GGGCAAAA-TAGTCATTTTACCT-TATAA
49799277 GGGCAAAATAGTCATTTTACCTTATA
1 GGGCAAAATAGTCATTTTACCTTATA
49799303 GAGGTATTAC
Statistics
Matches: 64, Mismatches: 12, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 2 0.03
27 60 0.94
28 2 0.03
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCTTATAA
Found at i:49799316 original size:27 final size:26
Alignment explanation
Indices: 49799286--49799378 Score: 114
Period size: 27 Copynumber: 3.5 Consensus size: 26
49799276 AGGGCAAAAT
* *
49799286 AGTCATTTTACCTTATAGAGGTATTAC
1 AGTCATTTTACCCTATAG-GGTATTTC
*
49799313 AGTCATTTTACCCTACAGGGATATTTC
1 AGTCATTTTACCCTATAGGG-TATTTC
* *
49799340 AGTCATTTTACCCTATGGGGGTATTTT
1 AGTCATTTTACCCTAT-AGGGTATTTC
49799367 AGTCATTTTACC
1 AGTCATTTTACC
49799379 ATATTTCGGT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
26 2 0.03
27 53 0.91
28 3 0.05
ACGTcount: A:0.25, C:0.18, G:0.16, T:0.41
Consensus pattern (26 bp):
AGTCATTTTACCCTATAGGGTATTTC
Found at i:49805091 original size:21 final size:21
Alignment explanation
Indices: 49805053--49805097 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
49805043 AGGACTAAAT
*
49805053 TGTAAAAATATAAAAGTGTTA
1 TGTAAAAATATAAAAGTGATA
* * *
49805074 TGTAAAAGTGTAAGAGTGATA
1 TGTAAAAATATAAAAGTGATA
49805095 TGT
1 TGT
49805098 GTGCATGATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (21 bp):
TGTAAAAATATAAAAGTGATA
Found at i:49805259 original size:22 final size:22
Alignment explanation
Indices: 49805234--49805297 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
49805224 TTATCGTTCC
49805234 GCACTTCTG-TGCCTACTGTTTT
1 GCACTTC-GATGCCTACTGTTTT
* ** *
49805256 GCACTTCGATGCTTTGTGATTT
1 GCACTTCGATGCCTACTGTTTT
49805278 GCACTTCGATGCCTACTGTT
1 GCACTTCGATGCCTACTGTT
49805298 ATATTAGTGC
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
21 1 0.03
22 32 0.97
ACGTcount: A:0.12, C:0.25, G:0.20, T:0.42
Consensus pattern (22 bp):
GCACTTCGATGCCTACTGTTTT
Found at i:49805758 original size:16 final size:16
Alignment explanation
Indices: 49805737--49805772 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
49805727 AAGAATTAAG
49805737 GAATTTAATAGATTTT
1 GAATTTAATAGATTTT
49805753 GAATTTAATAGATTTT
1 GAATTTAATAGATTTT
49805769 GAAT
1 GAAT
49805773 ATCAAGGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.00, G:0.14, T:0.47
Consensus pattern (16 bp):
GAATTTAATAGATTTT
Found at i:49805985 original size:20 final size:20
Alignment explanation
Indices: 49805962--49806002 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
49805952 AGGGACTAAA
49805962 ATATAAGTTATGAAAACTTT
1 ATATAAGTTATGAAAACTTT
49805982 ATATAAGTTATGAAAACTTT
1 ATATAAGTTATGAAAACTTT
49806002 A
1 A
49806003 CTTATTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.39
Consensus pattern (20 bp):
ATATAAGTTATGAAAACTTT
Found at i:49806142 original size:18 final size:18
Alignment explanation
Indices: 49806119--49806154 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
49806109 TTAAGATTGT
* *
49806119 TTTGAATTGGTTTTAAAC
1 TTTGAAATGGATTTAAAC
49806137 TTTGAAATGGATTTAAAC
1 TTTGAAATGGATTTAAAC
49806155 CAATGCAGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.44
Consensus pattern (18 bp):
TTTGAAATGGATTTAAAC
Found at i:49808647 original size:11 final size:11
Alignment explanation
Indices: 49808624--49808656 Score: 57
Period size: 11 Copynumber: 2.9 Consensus size: 11
49808614 AAAATGAGAA
49808624 AGAAAAGCTAAG
1 AGAAAA-CTAAG
49808636 AGAAAACTAAG
1 AGAAAACTAAG
49808647 AGAAAACTAA
1 AGAAAACTAA
49808657 ACCTAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.71
12 6 0.29
ACGTcount: A:0.64, C:0.09, G:0.18, T:0.09
Consensus pattern (11 bp):
AGAAAACTAAG
Found at i:49811256 original size:26 final size:26
Alignment explanation
Indices: 49811213--49811284 Score: 81
Period size: 26 Copynumber: 2.8 Consensus size: 26
49811203 TTCAATCCCT
** *
49811213 ATTTTACCCCTAACAAAATTTTGACG
1 ATTTTACCCCTAGTAAAATTTTAACG
* * *
49811239 ATTTTACCCTTGGTAAAATTTTAACT
1 ATTTTACCCCTAGTAAAATTTTAACG
*
49811265 ATTTTGCCCCTAGTAAAATT
1 ATTTTACCCCTAGTAAAATT
49811285 CTGAGAAAAT
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.40
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTAACG
Found at i:49813679 original size:5 final size:5
Alignment explanation
Indices: 49813662--49813704 Score: 79
Period size: 5 Copynumber: 8.8 Consensus size: 5
49813652 TTAAGAAAAA
49813662 TATAT TA-AT TATAT TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATA
49813705 GCATTTAAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.11
5 33 0.89
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
TATAT
Found at i:49820447 original size:27 final size:28
Alignment explanation
Indices: 49820416--49820480 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 28
49820406 CCCTAAAATA
49820416 GGTAAAATGACT-GTAATACCCCTATAG
1 GGTAAAATGACTCGTAATACCCCTATAG
* *
49820443 GGTAAAAT-AATCGTAATACCCCTATAT
1 GGTAAAATGACTCGTAATACCCCTATAG
*
49820470 GATAAAATGAC
1 GGTAAAATGAC
49820481 GATTATGCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
26 2 0.06
27 29 0.91
28 1 0.03
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (28 bp):
GGTAAAATGACTCGTAATACCCCTATAG
Found at i:49820707 original size:27 final size:27
Alignment explanation
Indices: 49820616--49820707 Score: 105
Period size: 27 Copynumber: 3.4 Consensus size: 27
49820606 ATGGAGGAAG
* *
49820616 TACTA-TACTGGTGACTATGTCACATT
1 TACTATTACTGGTGGCTATGCCACATT
* * *
49820642 CACTGTTACTGGTGGCTATGCCACAAT
1 TACTATTACTGGTGGCTATGCCACATT
* *
49820669 TACTAATACTGGTGGCTTTGCCACATT
1 TACTATTACTGGTGGCTATGCCACATT
*
49820696 TACTATTTCTGG
1 TACTATTACTGG
49820708 CAGCTATGTT
Statistics
Matches: 53, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 3 0.06
27 50 0.94
ACGTcount: A:0.23, C:0.22, G:0.18, T:0.37
Consensus pattern (27 bp):
TACTATTACTGGTGGCTATGCCACATT
Found at i:49827139 original size:46 final size:46
Alignment explanation
Indices: 49827087--49827178 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
49827077 AGTGTGCTCT
49827087 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
49827133 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
1 CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
49827179 ATGACAGAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.37, C:0.15, G:0.24, T:0.24
Consensus pattern (46 bp):
CTGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAAC
Found at i:49827191 original size:46 final size:46
Alignment explanation
Indices: 49827092--49827231 Score: 174
Period size: 46 Copynumber: 3.0 Consensus size: 46
49827082 GCTCTCTGAT
* *
49827092 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGAT
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
49827138 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
1 ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
* * * *
49827184 A-GAAAATGAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCATG
1 ATG-AAATG--T--GTAAGACCATGGTTGAAAGATACCATGGCAACATG
49827232 TCAAAGATAA
Statistics
Matches: 83, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
45 1 0.01
46 50 0.60
48 1 0.01
50 31 0.37
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (46 bp):
ATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC
Found at i:49829830 original size:49 final size:51
Alignment explanation
Indices: 49829772--49829906 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 51
49829762 ATCTGGTATG
* * *
49829772 CATAGTAGCCTACACATAGTACTACACATGTGATCA-A-TTATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCACAGTTATCCGGTACA
* * * * *
49829821 CGTAGTAGCCTGCACTTAGTACTACACACGTGACCACAGTTTTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACCACAGTTATCCGGTACA
*
49829872 CATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 CATAGTAGCCTGCACTTAGTACTACACATGTGACC
49829907 TCACAATAGA
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 31 0.42
50 1 0.01
51 41 0.56
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (51 bp):
CATAGTAGCCTGCACTTAGTACTACACATGTGACCACAGTTATCCGGTACA
Found at i:49829880 original size:51 final size:49
Alignment explanation
Indices: 49829761--49829899 Score: 170
Period size: 49 Copynumber: 2.8 Consensus size: 49
49829751 TAGCCAAAGC
* * * * * *
49829761 TATCTGGTATGCATAGTAGCCTACACATAGTACTACACATGTGATCAAT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
49829810 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCACAGT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCA-A-T
* *
49829861 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACA
49829900 TGCGACCTCA
Statistics
Matches: 76, Mismatches: 12, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
49 39 0.51
50 1 0.01
51 36 0.47
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:49831503 original size:27 final size:27
Alignment explanation
Indices: 49831473--49831525 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
49831463 CATTCACTGT
49831473 TACTAGTGGCTATGCCACAATTACTAA
1 TACTAGTGGCTATGCCACAATTACTAA
* * *
49831500 TACTGGTGGCTTTGCCACATTTACTA
1 TACTAGTGGCTATGCCACAATTACTA
49831526 TTTCAGGCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (27 bp):
TACTAGTGGCTATGCCACAATTACTAA
Found at i:49831719 original size:28 final size:28
Alignment explanation
Indices: 49831683--49831743 Score: 77
Period size: 28 Copynumber: 2.2 Consensus size: 28
49831673 ATTACACTGT
* * * *
49831683 ACTGATACTGTATTGAGCTTAGGCCCAC
1 ACTGTTACTGTATAGAGCTAAGGCCCAA
*
49831711 ACTGTTACTGTATAGCGCTAAGGCCCAA
1 ACTGTTACTGTATAGAGCTAAGGCCCAA
49831739 ACTGT
1 ACTGT
49831744 ATTGATACTG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (28 bp):
ACTGTTACTGTATAGAGCTAAGGCCCAA
Found at i:49837987 original size:47 final size:45
Alignment explanation
Indices: 49837836--49838053 Score: 176
Period size: 47 Copynumber: 4.7 Consensus size: 45
49837826 TCATATACGC
* * * * *
49837836 GTGCTGATGCATGTCCCAGACATGTCTTACAATAGCA-CAACTCT
1 GTGCCGATGCATGTCCCAGACATGTCTTACACTACCATCATCTAT
* * * *
49837880 -TAGCCGATGCATGTCCTAGACACGTCTTACACTGTCTATC-TCTAT
1 GT-GCCGATGCATGTCCCAGACATGTCTTACACT-ACCATCATCTAT
* * *
49837925 CGAGGTCGATGCATGTCCCAGACATGTCTTACACTACCACTCATCTCT
1 -G-TGCCGATGCATGTCCCAGACATGTCTTACACTACCA-TCATCTAT
* *
49837973 GTGCCGATGCCATGTCCCAGACATAGTCTTACACTGGCTC-TCAT-AAT
1 GTGCCGATG-CATGTCCCAGACAT-GTCTTACACT-AC-CATCATCTAT
*
49838020 GTGGCCGAAGCATGTCCCAGACATGTCTTACACT
1 GT-GCCGATGCATGTCCCAGACATGTCTTACACT
49838054 GGCGCACAAA
Statistics
Matches: 139, Mismatches: 22, Indels: 24
0.75 0.12 0.13
Matches are distributed among these distances:
43 1 0.01
44 27 0.19
45 4 0.03
46 19 0.14
47 62 0.45
48 24 0.17
49 1 0.01
50 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (45 bp):
GTGCCGATGCATGTCCCAGACATGTCTTACACTACCATCATCTAT
Found at i:49838042 original size:94 final size:92
Alignment explanation
Indices: 49837790--49838053 Score: 286
Period size: 94 Copynumber: 2.8 Consensus size: 92
49837780 GATATATTGT
* * * * * *
49837790 CGATGCCATGTCCTAAACATGGTCATACACTGGCTCTCATATACGCGTGCTGATGCATGTCCCAG
1 CGATGCCATGTCCTAGACATAGTCTTACACTGGCTCTCATA-ATGAG-GCCGATGCATGTCCCAG
* *
49837855 ACATGTCTTACAATAGCACAACTCTTAGC
64 ACATGTCTTACACTACCACAACTCTTAGC
* * *
49837884 CGATG-CATGTCCTAGACA-CGTCTTACACTGTCTATCTC-T-ATCGAGGTCGATGCATGTCCCA
1 CGATGCCATGTCCTAGACATAGTCTTACACTGGC--TCTCATAAT-GAGGCCGATGCATGTCCCA
*
49837945 GACATGTCTTACACTACCACTCATCTCTGT-GC
63 GACATGTCTTACACTACCA--CAACTCT-TAGC
* * *
49837977 CGATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCCAGAC
1 CGATGCCATGTCCTAGACATAGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGAC
49838042 ATGTCTTACACT
66 ATGTCTTACACT
49838054 GGCGCACAAA
Statistics
Matches: 143, Mismatches: 17, Indels: 20
0.79 0.09 0.11
Matches are distributed among these distances:
91 32 0.22
92 13 0.09
93 30 0.21
94 54 0.38
95 14 0.10
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (92 bp):
CGATGCCATGTCCTAGACATAGTCTTACACTGGCTCTCATAATGAGGCCGATGCATGTCCCAGAC
ATGTCTTACACTACCACAACTCTTAGC
Found at i:49838437 original size:30 final size:30
Alignment explanation
Indices: 49838397--49838454 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
49838387 GAATTTACAT
*
49838397 CTTTAGTAAAATGACCATTTCGCCCCTAAA
1 CTTTAATAAAATGACCATTTCGCCCCTAAA
*
49838427 CTTTAATAAAATGACCATTTTGCCCCTA
1 CTTTAATAAAATGACCATTTCGCCCCTA
49838455 TGCTCAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.33
Consensus pattern (30 bp):
CTTTAATAAAATGACCATTTCGCCCCTAAA
Found at i:49844366 original size:19 final size:21
Alignment explanation
Indices: 49844314--49844368 Score: 60
Period size: 23 Copynumber: 2.6 Consensus size: 21
49844304 AACTAAGCTC
49844314 CACACGCCCGTGTGCGTATAGAG
1 CACACGCCCGTGTGC--ATAGAG
*
49844337 CACACGACCGTGTGC-TAG-G
1 CACACGCCCGTGTGCATAGAG
*
49844356 GACACGCCCGTGT
1 CACACGCCCGTGT
49844369 CCAAAACCTG
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 12 0.41
20 3 0.10
23 14 0.48
ACGTcount: A:0.20, C:0.33, G:0.31, T:0.16
Consensus pattern (21 bp):
CACACGCCCGTGTGCATAGAG
Found at i:49845432 original size:27 final size:26
Alignment explanation
Indices: 49845384--49845435 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
49845374 GCGAGGCTGC
*
49845384 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
49845410 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
49845436 TTGCAGCGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:49847407 original size:44 final size:45
Alignment explanation
Indices: 49847353--49847562 Score: 187
Period size: 47 Copynumber: 4.6 Consensus size: 45
49847343 TACGCGTGCT
*
49847353 GATGCATGTCCCAAACATGTCTTACACTAGCACAACTCT-TAGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACATCTCTGTAGCC
* * * * *
49847397 GATGCGTGTCCCAGACACGTCTTACACTGGC-TATCTCTGTCAAGGCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACATCTCTGT--A-GCC
49847444 GATGCATGTCCCAAACATGTCTTACACTAGCACTCATCTCTGT-GCC
1 GATGCATGTCCCAAACATGTCTTACACTAGCA--CATCTCTGTAGCC
* * * *
49847490 GATGCCATGTCCCAGACATGATCTTACACTGGCTC-TCATAATGT-GCC
1 GATG-CATGTCCCAAACATG-TCTTACACTAGCACATC-T-CTGTAGCC
* * *
49847537 GAAGCATATCCCAGACATGTCTTACA
1 GATGCATGTCCCAAACATGTCTTACA
49847563 TTGGCGCACA
Statistics
Matches: 138, Mismatches: 17, Indels: 21
0.78 0.10 0.12
Matches are distributed among these distances:
43 5 0.04
44 28 0.20
45 9 0.07
46 24 0.17
47 53 0.38
48 11 0.08
50 8 0.06
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.26
Consensus pattern (45 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCACATCTCTGTAGCC
Found at i:49847460 original size:91 final size:94
Alignment explanation
Indices: 49847353--49847523 Score: 269
Period size: 91 Copynumber: 1.8 Consensus size: 94
49847343 TACGCGTGCT
*
49847353 GATGCATGTCCCAAACATGTCTTACACTAGCA-CAACTCT-TAGCCGATG-CGTGTCCCAGACAC
1 GATGCATGTCCCAAACATGTCTTACACTAGCACCAACTCTGT-GCCGATGCCATGTCCCAGACAC
49847415 G-TCTTACACTGGCTATCTCTGTCAAGGCC
65 GATCTTACACTGGCTATCTCTGTCAAGGCC
* *
49847444 GATGCATGTCCCAAACATGTCTTACACTAGCACTCATCTCTGTGCCGATGCCATGTCCCAGACAT
1 GATGCATGTCCCAAACATGTCTTACACTAGCAC-CAACTCTGTGCCGATGCCATGTCCCAGACAC
49847509 GATCTTACACTGGCT
65 GATCTTACACTGGCT
49847524 CTCATAATGT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
91 32 0.44
93 13 0.18
94 14 0.19
95 13 0.18
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (94 bp):
GATGCATGTCCCAAACATGTCTTACACTAGCACCAACTCTGTGCCGATGCCATGTCCCAGACACG
ATCTTACACTGGCTATCTCTGTCAAGGCC
Found at i:49850749 original size:27 final size:27
Alignment explanation
Indices: 49850662--49850750 Score: 81
Period size: 27 Copynumber: 3.1 Consensus size: 27
49850652 AAAATATATC
*
49850662 AATCAATTTCTAACGCTAA-ACCCTATT
1 AATCAATTTCTAAC-CCAACACCCTATT
* *
49850689 AATCAAATTTCTAACCCTATATCAACCTTGTT
1 AATC-AATTTCTAACCC-A-A-C-ACCCTATT
*
49850721 AATCGATTTCTAACCCAACACCCTATT
1 AATCAATTTCTAACCCAACACCCTATT
49850748 AAT
1 AAT
49850751 TTTTTCCCAA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
27 14 0.28
28 12 0.24
29 2 0.04
30 1 0.02
31 11 0.22
32 10 0.20
ACGTcount: A:0.36, C:0.27, G:0.03, T:0.34
Consensus pattern (27 bp):
AATCAATTTCTAACCCAACACCCTATT
Found at i:49854334 original size:13 final size:13
Alignment explanation
Indices: 49854318--49854347 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
49854308 ATTGTCATGT
49854318 AATTGTTTTTCTG
1 AATTGTTTTTCTG
49854331 AATTGTTTTTCTG
1 AATTGTTTTTCTG
49854344 AATT
1 AATT
49854348 TAGCTGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.07, G:0.13, T:0.60
Consensus pattern (13 bp):
AATTGTTTTTCTG
Found at i:49855315 original size:82 final size:81
Alignment explanation
Indices: 49855224--49855473 Score: 186
Period size: 82 Copynumber: 3.1 Consensus size: 81
49855214 CATATAAGAA
*
49855224 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATG
1 TATTTATTATTAAGAATTTTATTAAATTATATATTTTAA-TATAATATATTTAATAATAATTATG
49855289 TTTAAATATGATTAAAT
65 TTTAAATATGATTAAAT
* * * * * * * *
49855306 TATTTATTATT---CATATTAATAATCTTATCAAAATTTAA-ATAACA-A--TAACAATAA-TA-
1 TATTTATTATTAAGAATTTTATTAA-ATTAT-ATATTTTAATATAATATATTTAATAATAATTAT
* *
49855362 ATTTACCAA-A--A-CAAAT
64 GTTTA--AATATGATTAAAT
* *
49855378 T-TCTGGTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATGTTTAATAATAAT
1 TAT-T--T-ATTATTAAGAATTTTATTAAATTATATATTTTAA-TATAATATATTTAATAATAAT
*
49855442 TATGTTTAAATATGATTAAAA
61 TATGTTTAAATATGATTAAAT
49855463 TATTTATTATT
1 TATTTATTATT
49855474 GATAATAATA
Statistics
Matches: 121, Mismatches: 24, Indels: 46
0.63 0.13 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 5 0.04
75 9 0.07
76 17 0.14
77 4 0.03
78 13 0.11
79 13 0.11
80 4 0.03
81 17 0.14
82 19 0.16
83 5 0.04
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.47
Consensus pattern (81 bp):
TATTTATTATTAAGAATTTTATTAAATTATATATTTTAATATAATATATTTAATAATAATTATGT
TTAAATATGATTAAAT
Found at i:49855393 original size:157 final size:157
Alignment explanation
Indices: 49855227--49855536 Score: 548
Period size: 157 Copynumber: 2.0 Consensus size: 157
49855217 ATAAGAATAT
*
49855227 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* *
49855292 AAATATGATTAAATTATTTATTATTCATATTAATAATCTTATCAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
49855357 TAATAATTTACCAAAACAAATTTCTGG
131 TAATAATTTACCAAAACAAATTTCTGG
* *
49855384 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATGTTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* *
49855449 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
*
49855514 TAATCATTTACCAAAACAAATTT
131 TAATAATTTACCAAAACAAATTT
49855537 ATGCTAAGGG
Statistics
Matches: 145, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
157 145 1.00
ACGTcount: A:0.47, C:0.05, G:0.04, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAATAACAATAACAA
TAATAATTTACCAAAACAAATTTCTGG
Found at i:49855687 original size:16 final size:16
Alignment explanation
Indices: 49855666--49855717 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
49855656 GATTTGCTAT
*
49855666 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
49855682 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
49855698 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
49855714 TACA
1 TACA
49855718 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.38, C:0.35, G:0.00, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:49869235 original size:46 final size:46
Alignment explanation
Indices: 49869092--49869212 Score: 158
Period size: 46 Copynumber: 2.6 Consensus size: 46
49869082 ATATCTGTGT
* *
49869092 CGATGCCATGTCCCGGACATGGTCTTACACCGAC--ACATCTCATA-GC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTGACTTACATCTCA-AGGC
*
49869138 CGATGCATGTCCCAGACATGTCTTACACTGACTTACATCTCGAGGC
1 CGATGCATGTCCCAGACATGTCTTACACTGACTTACATCTCAAGGC
*
49869184 CGATGCATGTCCTAGACATGTCTTACACT
1 CGATGCATGTCCCAGACATGTCTTACACT
49869213 AGCACTAGTC
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
44 12 0.18
45 14 0.21
46 42 0.62
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTGACTTACATCTCAAGGC
Found at i:49871886 original size:16 final size:16
Alignment explanation
Indices: 49871862--49871892 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
49871852 CGTCTTCACT
49871862 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
49871878 TACTTACTTACTTAA
1 TACTCACTTACTTAA
49871893 TCAAATTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:49871898 original size:20 final size:20
Alignment explanation
Indices: 49871859--49871898 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
49871849 AAACGTCTTC
* *
49871859 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
49871879 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
49871899 TTGTTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:49871961 original size:18 final size:18
Alignment explanation
Indices: 49871938--49871974 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
49871928 TTATCAAGCA
49871938 TACATGAACATTATATAC
1 TACATGAACATTATATAC
49871956 TACATGAACATTATATAC
1 TACATGAACATTATATAC
49871974 T
1 T
49871975 TACCTTTTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.35
Consensus pattern (18 bp):
TACATGAACATTATATAC
Found at i:49872232 original size:53 final size:55
Alignment explanation
Indices: 49872173--49872290 Score: 134
Period size: 53 Copynumber: 2.2 Consensus size: 55
49872163 CATGTCTCAA
* ** *
49872173 CATGGTCTTACATGATATCC-TTGCCTTATTAA-CTCACCAA-TGCCATGCCTTGG
1 CATGGTCTTACATGAGA-CCTTTGCCTTAGAAACCTCACCAATTACCATGCCTTGG
* * * *
49872226 CATGGTCTTTCATGGGACCTTTGCCTTAGAAACCTTACCAATTATCATGCCTTGG
1 CATGGTCTTACATGAGACCTTTGCCTTAGAAACCTCACCAATTACCATGCCTTGG
49872281 CATGGTCTTA
1 CATGGTCTTA
49872291 TATGGTGTCC
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.04
53 24 0.45
54 7 0.13
55 20 0.38
ACGTcount: A:0.22, C:0.26, G:0.17, T:0.35
Consensus pattern (55 bp):
CATGGTCTTACATGAGACCTTTGCCTTAGAAACCTCACCAATTACCATGCCTTGG
Found at i:49882478 original size:28 final size:29
Alignment explanation
Indices: 49882429--49882498 Score: 81
Period size: 28 Copynumber: 2.5 Consensus size: 29
49882419 AATGTCTCGT
49882429 ACACTAAGTGCCA-TACTCAATATCCCGC
1 ACACTAAGTGCCATTACTCAATATCCCGC
* * ***
49882457 ACACCAAGTGCCATTA-TTAATATTTTGC
1 ACACTAAGTGCCATTACTCAATATCCCGC
49882485 ACACTAAGTGCCAT
1 ACACTAAGTGCCAT
49882499 ATACATATAT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.33, C:0.29, G:0.11, T:0.27
Consensus pattern (29 bp):
ACACTAAGTGCCATTACTCAATATCCCGC
Found at i:49888165 original size:202 final size:202
Alignment explanation
Indices: 49887819--49888218 Score: 773
Period size: 202 Copynumber: 2.0 Consensus size: 202
49887809 TATAGTGATG
49887819 CATCGTTGAATGGTCTGGGCTGTGTTTTGATGCAAGAAAGCAAATTCATAACTTATGCCTCGAGA
1 CATCGTTGAATGGTCTGGGCTGTGTTTTGATGCAAGAAAGCAAATTCATAACTTATGCCTCGAGA
*
49887884 GAGTTGAAGCCGCATAAAAATAATTACCCAACACACGATTTAGATTAAGCAGCGATTGTGTTCGC
66 GAGTTGAAGCCGCATAAAAATAATTACCCAACACACGATTTAGATTAAGCAGCCATTGTGTTCGC
49887949 ATTAAAGATTTGGCGCCATTATTTTTTTTGTGAGAAATGCCATGTTTATTCAGATCATAAAAGTT
131 ATTAAAGATTTGGCGCCATTATTTTTTTTGTGAGAAATGCCATGTTTATTCAGATCATAAAAGTT
49888014 TGAGATT
196 TGAGATT
49888021 CATCGTTGAATGGTCTGGGCTGTGTTTTGATGCAAGAAAGCAAATTCATAACTTATGCCTCGAGA
1 CATCGTTGAATGGTCTGGGCTGTGTTTTGATGCAAGAAAGCAAATTCATAACTTATGCCTCGAGA
* *
49888086 GAGTTGAAGCCGCATAAAAATAATTACCCAACACACGATTTAGATTTAGCAGCCATTGTGTTTGC
66 GAGTTGAAGCCGCATAAAAATAATTACCCAACACACGATTTAGATTAAGCAGCCATTGTGTTCGC
49888151 ATTAAAGATTTGGCGCCATTATTTTTTTTGTGAGAAATGCCATGTTTATTCAGATCATAAAAGTT
131 ATTAAAGATTTGGCGCCATTATTTTTTTTGTGAGAAATGCCATGTTTATTCAGATCATAAAAGTT
49888216 TGA
196 TGA
49888219 AATATCTGAT
Statistics
Matches: 195, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
202 195 1.00
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.33
Consensus pattern (202 bp):
CATCGTTGAATGGTCTGGGCTGTGTTTTGATGCAAGAAAGCAAATTCATAACTTATGCCTCGAGA
GAGTTGAAGCCGCATAAAAATAATTACCCAACACACGATTTAGATTAAGCAGCCATTGTGTTCGC
ATTAAAGATTTGGCGCCATTATTTTTTTTGTGAGAAATGCCATGTTTATTCAGATCATAAAAGTT
TGAGATT
Found at i:49891217 original size:43 final size:43
Alignment explanation
Indices: 49891129--49891244 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
49891119 TGTGTTTACA
* * * *
49891129 TGTAAGACCATGTCTGGTACATTGGCATTGTATTGTGATTATG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTAATGCGATTATG
* *
49891172 TGTAAGATCATGTCTGGGACATTGGCATCGTTAAT-CGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCATCG-TAATGCGATTATG
* * *
49891215 TGTAAGACCCTGTCCGGGACAGTGGCATCG
1 TGTAAGACCATGTCTGGGACATTGGCATCG
49891245 AGATGTGATA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
43 59 0.95
44 3 0.05
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTAATGCGATTATG
Found at i:49905506 original size:22 final size:19
Alignment explanation
Indices: 49905481--49905520 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 19
49905471 ATGATAACTG
49905481 ATATATAATTATATTTATTATA
1 ATATAT-ATTA-A-TTATTATA
49905503 ATATATATTAATTATTAT
1 ATATATATTAATTATTAT
49905521 CAACTTTGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 1 0.06
21 4 0.22
22 6 0.33
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
ATATATATTAATTATTATA
Found at i:49905511 original size:16 final size:15
Alignment explanation
Indices: 49905484--49905517 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
49905474 ATAACTGATA
*
49905484 TATAATTATATTTAT
1 TATAATTATATTAAT
49905499 TATAATATATATTAAT
1 TATAAT-TATATTAAT
49905515 TAT
1 TAT
49905518 TATCAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (15 bp):
TATAATTATATTAAT
Done.