Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 152 of 186
Found at i:50394122 original size:72 final size:73
Alignment explanation
Indices: 50394004--50394153 Score: 198
Period size: 72 Copynumber: 2.1 Consensus size: 73
50393994 GATGCCGTTT
* * * *
50394004 TATTTCTCTCCCCCCAATTGCTTTTTCTTTCTCGATTCCACTTTCTTTCTCAGCCATTCTCAGCC
1 TATTTCTCTCCCCCCAATTCCCTTTTCTTTCTCAATTCCACTTTCTTTCTCAGCCATTCTCAACC
50394069 TGTACTTC
66 TGTACTTC
* *
50394077 TATTTCTCT-CCCCCGATTCCCTTTTCTTTC-CTAATTCC-CTTTTCTTTCTCAGCCTTTCTCAA
1 TATTTCTCTCCCCCCAATTCCCTTTTCTTTCTC-AATTCCAC-TTTCTTTCTCAGCCATTCTCAA
*
50394139 CCTGTTCTTC
64 CCTGTACTTC
50394149 TATTT
1 TATTT
50394154 TATACCCGAA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
71 2 0.03
72 57 0.84
73 9 0.13
ACGTcount: A:0.11, C:0.35, G:0.05, T:0.48
Consensus pattern (73 bp):
TATTTCTCTCCCCCCAATTCCCTTTTCTTTCTCAATTCCACTTTCTTTCTCAGCCATTCTCAACC
TGTACTTC
Found at i:50394718 original size:3 final size:3
Alignment explanation
Indices: 50394710--50394743 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
50394700 TTAGCTTTGC
50394710 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
50394744 TTCTTTTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:50397276 original size:15 final size:16
Alignment explanation
Indices: 50397256--50397286 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
50397246 GTTTTTGTCT
50397256 TATATATGAT-TAAAA
1 TATATATGATCTAAAA
50397271 TATATATGATCTAAAA
1 TATATATGATCTAAAA
50397287 GCAAGAGAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.67
16 5 0.33
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (16 bp):
TATATATGATCTAAAA
Found at i:50400062 original size:12 final size:14
Alignment explanation
Indices: 50400039--50400099 Score: 65
Period size: 14 Copynumber: 4.6 Consensus size: 14
50400029 ACAAATAAAA
*
50400039 ATATGATATTTAAT
1 ATATAATATTTAAT
50400053 A-ATAAT-TTTAA-
1 ATATAATATTTAAT
* *
50400064 AAATAGTATTTAAT
1 ATATAATATTTAAT
*
50400078 ATATAATATATAAT
1 ATATAATATTTAAT
50400092 ATATAATA
1 ATATAATA
50400100 AAAAAAATAA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
11 1 0.03
12 9 0.23
13 9 0.23
14 20 0.51
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.44
Consensus pattern (14 bp):
ATATAATATTTAAT
Found at i:50400064 original size:27 final size:26
Alignment explanation
Indices: 50400034--50400084 Score: 77
Period size: 25 Copynumber: 1.9 Consensus size: 26
50400024 ATAATACAAA
50400034 TAAAAATATGATATTTAATA-ATAATTT
1 TAAAAATA-G-TATTTAATATATAATTT
50400061 TAAAAATAGTATTTAATATATAAT
1 TAAAAATAGTATTTAATATATAAT
50400085 ATATAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 6 0.26
27 8 0.35
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (26 bp):
TAAAAATAGTATTTAATATATAATTT
Found at i:50400086 original size:7 final size:7
Alignment explanation
Indices: 50400074--50400099 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
50400064 AAATAGTATT
50400074 TAATATA
1 TAATATA
50400081 TAATATA
1 TAATATA
50400088 TAATATA
1 TAATATA
50400095 TAATA
1 TAATA
50400100 AAAAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
TAATATA
Found at i:50400111 original size:19 final size:19
Alignment explanation
Indices: 50400087--50400158 Score: 56
Period size: 21 Copynumber: 3.6 Consensus size: 19
50400077 TATATAATAT
50400087 ATAATATATAATAAAAAAA
1 ATAATATATAATAAAAAAA
*
50400106 ATAATAATTATATATAAAAATA
1 ATAAT-A-TATA-ATAAAAAAA
** *
50400128 A-AATATATTGGTTTAAAAAA
1 ATAATATA-T-AATAAAAAAA
50400148 ATAATATATAA
1 ATAATATATAA
50400159 AATAAAAAGT
Statistics
Matches: 40, Mismatches: 7, Indels: 12
0.68 0.12 0.20
Matches are distributed among these distances:
19 7 0.17
20 11 0.28
21 13 0.32
22 9 0.22
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (19 bp):
ATAATATATAATAAAAAAA
Found at i:50400122 original size:22 final size:23
Alignment explanation
Indices: 50400082--50400135 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 23
50400072 TTTAATATAT
50400082 AATATATAATATATAATAAAAAA
1 AATATATAATATATAATAAAAAA
50400105 AATA-ATAAT-TATATATAAAAATAA
1 AATATATAATATATA-AT-AAAA-AA
50400129 AATATAT
1 AATATAT
50400136 TGGTTTAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 4 0.15
22 7 0.26
23 8 0.30
24 6 0.22
25 2 0.07
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (23 bp):
AATATATAATATATAATAAAAAA
Found at i:50400424 original size:10 final size:10
Alignment explanation
Indices: 50400389--50400450 Score: 54
Period size: 10 Copynumber: 5.8 Consensus size: 10
50400379 TACATAACAT
50400389 ATATAA-AAA
1 ATATAATAAA
* *
50400398 AAATAAGTAAT
1 ATATAA-TAAA
50400409 ATATAATAAA
1 ATATAATAAA
50400419 ATATAATAAA
1 ATATAATAAA
50400429 TGTTATATAATAAA
1 ----ATATAATAAA
50400443 ATATAATA
1 ATATAATA
50400451 TATATATAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
9 5 0.12
10 21 0.49
11 7 0.16
14 10 0.23
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (10 bp):
ATATAATAAA
Found at i:50400454 original size:19 final size:19
Alignment explanation
Indices: 50400382--50400484 Score: 68
Period size: 24 Copynumber: 5.0 Consensus size: 19
50400372 TACGATATAC
* *
50400382 ATAACATATATAA-AAAAA
1 ATAATATATATAATAAAAT
50400400 ATAAGTAATATATAATAAAAT
1 ATAA-T-ATATATAATAAAAT
50400421 ATAATAAATGTTATATAATAAAAT
1 ATAAT--A---TATATAATAAAAT
50400445 ATAATATATAT-ATAGGAAA-
1 ATAATATATATAATA--AAAT
50400464 ATAATATATGATAAATAAAAT
1 ATAATATAT-AT-AATAAAAT
50400485 TTTTATATAA
Statistics
Matches: 70, Mismatches: 2, Indels: 23
0.74 0.02 0.24
Matches are distributed among these distances:
18 7 0.10
19 14 0.20
20 17 0.24
21 10 0.14
22 4 0.06
24 18 0.26
ACGTcount: A:0.62, C:0.01, G:0.05, T:0.32
Consensus pattern (19 bp):
ATAATATATATAATAAAAT
Found at i:50400524 original size:26 final size:25
Alignment explanation
Indices: 50400463--50400551 Score: 80
Period size: 25 Copynumber: 3.6 Consensus size: 25
50400453 TATATAGGAA
**
50400463 AATAATATATGATAAATAAAATTTTT
1 AATAATATAT-ATAAATAGTATTTTT
50400489 ATATAA-ATATATAAATAGTATTTTT
1 A-ATAATATATATAAATAGTATTTTT
**
50400514 AATAATGATATATGTATAGT-TTTTT
1 AATAAT-ATATATAAATAGTATTTTT
50400539 AA-AATA-A-ATAAAT
1 AATAATATATATAAAT
50400552 GATATATATA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
21 4 0.07
22 1 0.02
23 1 0.02
24 7 0.13
25 21 0.39
26 16 0.30
27 4 0.07
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.44
Consensus pattern (25 bp):
AATAATATATATAAATAGTATTTTT
Found at i:50400557 original size:26 final size:26
Alignment explanation
Indices: 50400503--50400557 Score: 60
Period size: 25 Copynumber: 2.1 Consensus size: 26
50400493 AAATATATAA
* *
50400503 ATAGTATTTTTAATAATGATATATGT
1 ATAGTATTTTTAATAATAATAAATGT
50400529 ATAGT-TTTTTAA-AATAAATAAATGAT
1 ATAGTATTTTTAATAAT-AATAAATG-T
50400555 ATA
1 ATA
50400558 TATAAAAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 3 0.12
25 13 0.52
26 9 0.36
ACGTcount: A:0.45, C:0.00, G:0.09, T:0.45
Consensus pattern (26 bp):
ATAGTATTTTTAATAATAATAAATGT
Found at i:50402127 original size:43 final size:42
Alignment explanation
Indices: 50402065--50402205 Score: 165
Period size: 43 Copynumber: 3.3 Consensus size: 42
50402055 AATAATTTTT
* * *
50402065 TAAAAGGTCATGATTTTTAGCGGCGTTTGTGAGAAAAGTGCCGT
1 TAAAA-GTCATG-TTTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* * *
50402109 TAAAAGTCATGTTCTTTAGTGGCGTCTGTGGGAAAAGCGTCGC
1 TAAAAGTCATGTT-TTTAGCGGCGTTTGTGGGAAAAGCGCCGC
* *
50402152 TAAAGGTCATGTTTTTTAGCGGCGTTTATGGGAAAAGCGCCGC
1 TAAAAGTCATG-TTTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
*
50402195 TAAAGGTCATG
1 TAAAAGTCATG
50402206 CTCCAGTTTG
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
42 2 0.02
43 75 0.89
44 7 0.08
ACGTcount: A:0.26, C:0.14, G:0.30, T:0.30
Consensus pattern (42 bp):
TAAAAGTCATGTTTTTAGCGGCGTTTGTGGGAAAAGCGCCGC
Found at i:50402644 original size:39 final size:40
Alignment explanation
Indices: 50402540--50402655 Score: 119
Period size: 40 Copynumber: 2.9 Consensus size: 40
50402530 AACACACCAG
* * * *
50402540 ACAAAAGCTCATAAAAGCTGATCCAACCAAAATACGTCAA
1 ACAAAAGCTCATAAGAGCTGATCCACCCGAAACACGTCAA
* *
50402580 ACAAAAGCTCATAAGATCT-AGTCCACCCGAAACACG-CCA
1 ACAAAAGCTCATAAGAGCTGA-TCCACCCGAAACACGTCAA
* *
50402619 ATAGAAGCTCATAAGAGCTGATCCACCCAGAACACAC
1 ACAAAAGCTCATAAGAGCTGATCCACCC-GAA-ACAC
50402656 CAAACTGGAA
Statistics
Matches: 63, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
39 26 0.41
40 33 0.52
41 4 0.06
ACGTcount: A:0.44, C:0.29, G:0.13, T:0.14
Consensus pattern (40 bp):
ACAAAAGCTCATAAGAGCTGATCCACCCGAAACACGTCAA
Found at i:50407826 original size:3 final size:3
Alignment explanation
Indices: 50407818--50407844 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
50407808 ATTCATATGC
50407818 ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT
50407845 TTAGATTGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:50410331 original size:43 final size:41
Alignment explanation
Indices: 50410261--50410407 Score: 129
Period size: 43 Copynumber: 3.5 Consensus size: 41
50410251 TGTGTTCTCA
**
50410261 TGTAAGACCATATCTGGGATGTTGGCATCGATATGTGATTACG
1 TGTAAGACCATATCTGGGA-CATGGCATCGATAT-TGATTACG
*
50410304 TGTAAGACCATGTCTGGGACATCGGCATCG-TATTTGATT-CG
1 TGTAAGACCATATCTGGGACAT-GGCATCGATA-TTGATTACG
* * * *
50410345 TGTAAGACCCTATCTGAGACAGTGGCATCAATATTAGA-TAGCA
1 TGTAAGACCATATCTGGGACA-TGGCATCGATATT-GATTA-CG
**
50410388 TGTAAGACCACGTCTGGGAC
1 TGTAAGACCATATCTGGGAC
50410408 GTTGGCATTA
Statistics
Matches: 85, Mismatches: 12, Indels: 14
0.77 0.11 0.13
Matches are distributed among these distances:
41 29 0.34
42 13 0.15
43 43 0.51
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.29
Consensus pattern (41 bp):
TGTAAGACCATATCTGGGACATGGCATCGATATTGATTACG
Found at i:50410372 original size:41 final size:43
Alignment explanation
Indices: 50410261--50410378 Score: 136
Period size: 41 Copynumber: 2.8 Consensus size: 43
50410251 TGTGTTCTCA
*
50410261 TGTAAGACCATATCTGGGA-TGTTGGCATCGATATGTGATTACG
1 TGTAAGACCATATCTGGGACAG-TGGCATCGATATGTGATTACG
* *
50410304 TGTAAGACCATGTCTGGGACA-TCGGCATCG-TATTTGATT-CG
1 TGTAAGACCATATCTGGGACAGT-GGCATCGATATGTGATTACG
* * *
50410345 TGTAAGACCCTATCTGAGACAGTGGCATCAATAT
1 TGTAAGACCATATCTGGGACAGTGGCATCGATAT
50410379 TAGATAGCAT
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
41 26 0.41
42 13 0.20
43 25 0.39
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCATATCTGGGACAGTGGCATCGATATGTGATTACG
Found at i:50414159 original size:15 final size:15
Alignment explanation
Indices: 50414129--50414182 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 15
50414119 CAAAGATAAC
*
50414129 AAGAAAACCA-AATA
1 AAGAAACCCAGAATA
50414143 AAGAAACCCAGAATA
1 AAGAAACCCAGAATA
* * *
50414158 AAGAGATCCAGGATA
1 AAGAAACCCAGAATA
50414173 AAGAAACCCA
1 AAGAAACCCA
50414183 AGATACGATA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 9 0.27
15 24 0.73
ACGTcount: A:0.59, C:0.19, G:0.15, T:0.07
Consensus pattern (15 bp):
AAGAAACCCAGAATA
Found at i:50416485 original size:12 final size:12
Alignment explanation
Indices: 50416468--50416494 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
50416458 ATTCCGAAGT
50416468 ATATATATATAC
1 ATATATATATAC
50416480 ATATATATATAC
1 ATATATATATAC
50416492 ATA
1 ATA
50416495 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:50417031 original size:27 final size:28
Alignment explanation
Indices: 50416947--50417044 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
50416937 CATGAGATTG
* * * *
50416947 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
50416976 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
50417004 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
50417031 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
50417045 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:50417055 original size:27 final size:27
Alignment explanation
Indices: 50416975--50417057 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
50416965 TAAATTGTAC
* *
50416975 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
50417003 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
50417030 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
50417057 A
1 A
50417058 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:50429960 original size:40 final size:40
Alignment explanation
Indices: 50429923--50430014 Score: 150
Period size: 40 Copynumber: 2.3 Consensus size: 40
50429913 GCTACTCGTT
*
50429923 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
50429963 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
50430003 CAAATGCCTTCG
1 CAAATGCCTTCG
50430015 TTTTTTTTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
40 47 0.96
41 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:50431313 original size:85 final size:85
Alignment explanation
Indices: 50431167--50431594 Score: 606
Period size: 85 Copynumber: 5.0 Consensus size: 85
50431157 ATGGTTCCAA
* * * ** * * * *
50431167 TCTTACATGTAATTCAGTATCGATGCCTCTGTCATAGATAGGGTCTTATACGAATACAGATACGA
1 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACAGATACGA
*
50431232 TACCGATGTCCCAGACATGG
66 TGCCGATGTCCCAGACATGG
* ** * *
50431252 TCTTACACGTATTTCAGTATCATTGCCAGTATCCCAAACAGGGTCTTTTACGAAAATAGATACGA
1 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACAGATACGA
*
50431317 TGTCGATGTCCCAGACATGG
66 TGCCGATGTCCCAGACATGG
* * * * *
50431337 TCTTACACGTATTTTAGTATCGTTG-CTCTGTCCTAGATAGGGGCTTTTACGAAAACAGATACGA
1 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACAGATACGA
50431401 TGCCGATGTCCCAGACATGG
66 TGCCGATGTCCCAGACATGG
* * *
50431421 TCTTACACGTACTTCAGTATCGTTGCCTCTGTCCCAGACAGGGTCTTTTATGAAAACAGATACGA
1 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACAGATACGA
*
50431486 TGCCAATGTCCCAGACATGG
66 TGCCGATGTCCCAGACATGG
*
50431506 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACATATACGA
1 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACAGATACGA
*
50431571 TGCCGATGTCCCAGACAGGG
66 TGCCGATGTCCCAGACATGG
50431591 TCTT
1 TCTT
50431595 TTATGAAAAC
Statistics
Matches: 302, Mismatches: 40, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
84 73 0.24
85 229 0.76
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (85 bp):
TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACAGATACGA
TGCCGATGTCCCAGACATGG
Found at i:50431484 original size:169 final size:170
Alignment explanation
Indices: 50431167--50431594 Score: 633
Period size: 169 Copynumber: 2.5 Consensus size: 170
50431157 ATGGTTCCAA
* * * * * *
50431167 TCTTACATGTAATTCAGTATCGATGCCTCTGTCATAGATAGGGTCTTATACGAATACAGATACGA
1 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGATAGGGTCTTTTACGAAAACAGATACGA
* * *
50431232 TACCGATGTCCCAGACATGGTCTTACACGTATTTCAGTATCATTGCCAGTATCCCAAACAGGGTC
66 TGCCGATGTCCCAGACATGGTCTTACACGTACTTCAGTATCATTGCCACTATCCCAAACAGGGTC
* * *
50431297 TTTTACGAAAATAGATACGATGTCGATGTCCCAGACATGG
131 TTTTACGAAAACAGATACGATGCCAATGTCCCAGACATGG
* *
50431337 TCTTACACGTATTTTAGTATCGTTG-CTCTGTCCTAGATAGGGGCTTTTACGAAAACAGATACGA
1 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGATAGGGTCTTTTACGAAAACAGATACGA
* * * *
50431401 TGCCGATGTCCCAGACATGGTCTTACACGTACTTCAGTATCGTTGCCTCTGTCCCAGACAGGGTC
66 TGCCGATGTCCCAGACATGGTCTTACACGTACTTCAGTATCATTGCCACTATCCCAAACAGGGTC
*
50431466 TTTTATGAAAACAGATACGATGCCAATGTCCCAGACATGG
131 TTTTACGAAAACAGATACGATGCCAATGTCCCAGACATGG
* * * *
50431506 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACATATACGA
1 TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGATAGGGTCTTTTACGAAAACAGATACGA
*
50431571 TGCCGATGTCCCAGACAGGGTCTT
66 TGCCGATGTCCCAGACATGGTCTT
50431595 TTATGAAAAC
Statistics
Matches: 231, Mismatches: 26, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
169 153 0.66
170 78 0.34
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (170 bp):
TCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGATAGGGTCTTTTACGAAAACAGATACGA
TGCCGATGTCCCAGACATGGTCTTACACGTACTTCAGTATCATTGCCACTATCCCAAACAGGGTC
TTTTACGAAAACAGATACGATGCCAATGTCCCAGACATGG
Found at i:50431610 original size:127 final size:127
Alignment explanation
Indices: 50431206--50431714 Score: 472
Period size: 127 Copynumber: 4.0 Consensus size: 127
50431196 TGTCATAGAT
* * *
50431206 AGGGTCTTATACGAATACAGATACGATACCGATGTCCCAGACATGGTCTTACACGTATTTCAGTA
1 AGGGTCTTATACGAAAACAGATACGATGCCAATGTCCCAGACATGGTCTTACACGTATTTCAGTA
* ** * * * *
50431271 TCATTGCCAGTATCCCAAACAGGGTCTTTTACGAAAATAGATACGATGTCGATGTCCCAGAC
66 TCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACATATACGATGCCGATGTCCCAGAC
* * **** * * * * * ** ***
50431333 ATGGTCTTACACGTATTTTAG-TATCGTTGCTC--TGTCCTAGATAGGGGCTTTTACG-AAAACA
1 AGGGTCTTATACG-AAAACAGATA-CGATGC-CAATGTCCCAGACATGGTCTTACACGTATTTCA
* ** * * ** *** * **
50431394 G-ATACGATGCCGATGTCCCAGACATGGTCTTACACGTACTTCAGTAT-CGTTGCCTCTGTCCCA
63 GTAT-CGTTGCCTCTGTCCCAAACAGGGTCTTTTACG-AAAACA-TATACGATGCCGATGTCCCA
50431457 GAC
125 GAC
* *
50431460 AGGGTCTTTTATGAAAACAGATACGATGCCAATGTCCCAGACATGGTCTTACACGTATTTCAGTA
1 AGGGTCTTATACGAAAACAGATACGATGCCAATGTCCCAGACATGGTCTTACACGTATTTCAGTA
50431525 TCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACATATACGATGCCGATGTCCCAGAC
66 TCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACATATACGATGCCGATGTCCCAGAC
* * ***
50431587 AGGGTCTTTTATGAAAACAGATACGATGCCAGCATCCCAGACATGGTCTTACACGTATTTCAGTA
1 AGGGTCTTATACGAAAACAGATACGATGCCAATGTCCCAGACATGGTCTTACACGTATTTCAGTA
* * * *
50431652 TCGTTGCCTCTGTCCCAGATAGGGTCTTTTACAAAAACATATACGATGCCAATGTCCCAGAC
66 TCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACATATACGATGCCGATGTCCCAGAC
50431714 A
1 A
50431715 TGATCTTACA
Statistics
Matches: 298, Mismatches: 72, Indels: 24
0.76 0.18 0.06
Matches are distributed among these distances:
125 3 0.01
126 38 0.13
127 215 0.72
128 39 0.13
129 3 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (127 bp):
AGGGTCTTATACGAAAACAGATACGATGCCAATGTCCCAGACATGGTCTTACACGTATTTCAGTA
TCGTTGCCTCTGTCCCAAACAGGGTCTTTTACGAAAACATATACGATGCCGATGTCCCAGAC
Found at i:50431666 original size:85 final size:85
Alignment explanation
Indices: 50431577--50431734 Score: 235
Period size: 85 Copynumber: 1.9 Consensus size: 85
50431567 ACGATGCCGA
** * *
50431577 TGTCCCAGACAGGGTCTTTTATGAAAACAGATACGATGCCAGCATCCCAGACATGGTCTTACACG
1 TGTCCCAGACAGGGTCTTTTACAAAAACAGATACGATGCCAACATCCCAGACATGATCTTACACG
*
50431642 TATTTCAGTATCGTTGCCTC
66 TAATTCAGTATCGTTGCCTC
* * **
50431662 TGTCCCAGATAGGGTCTTTTACAAAAACATATACGATGCCAATGTCCCAGACATGATCTTACACG
1 TGTCCCAGACAGGGTCTTTTACAAAAACAGATACGATGCCAACATCCCAGACATGATCTTACACG
50431727 TAATTCAG
66 TAATTCAG
50431735 ATCAATACCA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
85 64 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (85 bp):
TGTCCCAGACAGGGTCTTTTACAAAAACAGATACGATGCCAACATCCCAGACATGATCTTACACG
TAATTCAGTATCGTTGCCTC
Found at i:50434484 original size:17 final size:17
Alignment explanation
Indices: 50434462--50434495 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
50434452 TAGTCTTTTA
*
50434462 ACAGTTCTGACCATCTT
1 ACAGTTCTAACCATCTT
50434479 ACAGTTCTAACCATCTT
1 ACAGTTCTAACCATCTT
50434496 CTCTGTCGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.09, T:0.35
Consensus pattern (17 bp):
ACAGTTCTAACCATCTT
Found at i:50437758 original size:12 final size:13
Alignment explanation
Indices: 50437743--50437774 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
50437733 ATAACACATT
50437743 TCAAAAC-ATGCA
1 TCAAAACTATGCA
50437755 TCAAAACTATGCA
1 TCAAAACTATGCA
50437768 -CAAAACT
1 TCAAAACT
50437775 TAACATTTGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.50, C:0.25, G:0.06, T:0.19
Consensus pattern (13 bp):
TCAAAACTATGCA
Found at i:50438441 original size:85 final size:85
Alignment explanation
Indices: 50438298--50438830 Score: 834
Period size: 85 Copynumber: 6.3 Consensus size: 85
50438288 CAATGCTGAC
* * * * *
50438298 GTCCCAGACATGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCATAGACAGGGTCTTATACG
1 GTCCCAGACATGGTCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
* *
50438363 AATACAGATACGATACCGAT
66 AAAACAGATACGATGCCGAT
* * * *
50438383 GTCCCAGACATGGTCTTACACGTATTTCAGTATCATTGCCTGTATCCCAGACAGGGTCTTTTACG
1 GTCCCAGACATGGTCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
* *
50438448 AAAATAGATACGATGTCGAT
66 AAAACAGATACGATGCCGAT
* * * *
50438468 GTCCCAAACATGGTCTTACACGTATTTTAGTATCGTTG-CTCTGTCCTAGATAGGGGCTTTTACG
1 GTCCCAGACATGGTCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
*
50438532 AAAACAGATACGATGTCGAT
66 AAAACAGATACGATGCCGAT
50438552 GTCCCAGACATGGTCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
1 GTCCCAGACATGGTCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
*
50438617 AAAACAGATACGATACCGAT
66 AAAACAGATACGATGCCGAT
* * *
50438637 GTCCCAGACATGGTCTTACACATATTTCAGTATCGTTGCCTCTGTCCCAGACAGGGTCTTTTATG
1 GTCCCAGACATGGTCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
*
50438702 AAAATAGATACGATGCCGAT
66 AAAACAGATACGATGCCGAT
*
50438722 GTCCCAGACATGGTCTTACACATATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
1 GTCCCAGACATGGTCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
*
50438787 AAAATAGATACGATGCCGAT
66 AAAACAGATACGATGCCGAT
50438807 GTCCCAGACATGGTCTTACACGTA
1 GTCCCAGACATGGTCTTACACGTA
50438831 ATTTAGATCA
Statistics
Matches: 411, Mismatches: 36, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
84 76 0.18
85 335 0.82
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
AAAACAGATACGATGCCGAT
Found at i:50438756 original size:254 final size:255
Alignment explanation
Indices: 50438298--50438833 Score: 894
Period size: 254 Copynumber: 2.1 Consensus size: 255
50438288 CAATGCTGAC
*
50438298 GTCCCAGACATGGTCTTACATGTAATTCAGTATCGATGCCTCTGTCATAGACAGGGTCTTATACG
1 GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCTCTGTCATAGACAGGGTCTTATACG
* * *
50438363 AATACAGATACGATACCGATGTCCCAGACATGGTCTTACACGTATTTCAGTATCATTGCCTGTAT
66 AAAACAGATACGATACCGATGTCCCAGACATGGTCTTACACATATTTCAGTATCATTGCCTCTAT
* *
50438428 CCCAGACAGGGTCTTTTACGAAAATAGATACGATGTCGATGTCCCAAACATGGTCTTACACGTAT
131 CCCAGACAGGGTCTTTTACGAAAATAGATACGATGCCGATGTCCCAAACATGGTCTTACACATAT
* * *
50438493 TTTAGTATCGTTG-CTCTGTCCTAGATAGGGGCTTTTACGAAAACAGATACGATGTCGAT
196 TTCAGTATCGTTGCCTCTGTCCTAGACAGGGGCTTTTACGAAAACAGATACGATGCCGAT
* * * *
50438552 GTCCCAGACATGGTCTTACACGTATTTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACG
1 GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCTCTGTCATAGACAGGGTCTTATACG
* *
50438617 AAAACAGATACGATACCGATGTCCCAGACATGGTCTTACACATATTTCAGTATCGTTGCCTCTGT
66 AAAACAGATACGATACCGATGTCCCAGACATGGTCTTACACATATTTCAGTATCATTGCCTCTAT
* *
50438682 CCCAGACAGGGTCTTTTATGAAAATAGATACGATGCCGATGTCCCAGACATGGTCTTACACATAT
131 CCCAGACAGGGTCTTTTACGAAAATAGATACGATGCCGATGTCCCAAACATGGTCTTACACATAT
* *
50438747 TTCAGTATCGTTGCCTCTGTCCTAGACAGGGTCTTTTACGAAAATAGATACGATGCCGAT
196 TTCAGTATCGTTGCCTCTGTCCTAGACAGGGGCTTTTACGAAAACAGATACGATGCCGAT
50438807 GTCCCAGACATGGTCTTACACGTAATT
1 GTCCCAGACATGGTCTTACACGTAATT
50438834 TAGATCAATG
Statistics
Matches: 261, Mismatches: 20, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
254 193 0.74
255 68 0.26
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (255 bp):
GTCCCAGACATGGTCTTACACGTAATTCAGTATCGATGCCTCTGTCATAGACAGGGTCTTATACG
AAAACAGATACGATACCGATGTCCCAGACATGGTCTTACACATATTTCAGTATCATTGCCTCTAT
CCCAGACAGGGTCTTTTACGAAAATAGATACGATGCCGATGTCCCAAACATGGTCTTACACATAT
TTCAGTATCGTTGCCTCTGTCCTAGACAGGGGCTTTTACGAAAACAGATACGATGCCGAT
Found at i:50457263 original size:27 final size:27
Alignment explanation
Indices: 50457233--50457301 Score: 93
Period size: 27 Copynumber: 2.6 Consensus size: 27
50457223 AATATGACAG
*
50457233 GAAAGAATAGCCTTTGTGACGAATTAT
1 GAAAGAATAGCCTTTGTGACAAATTAT
**
50457260 GAAAGAATAGCCTTTGTGGTAAATTAT
1 GAAAGAATAGCCTTTGTGACAAATTAT
* *
50457287 GAAAGGATAACCTTT
1 GAAAGAATAGCCTTT
50457302 TTGGCTATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.30
Consensus pattern (27 bp):
GAAAGAATAGCCTTTGTGACAAATTAT
Found at i:50458269 original size:18 final size:18
Alignment explanation
Indices: 50458246--50458282 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
50458236 ACCTTTAGAG
50458246 CTCTAATTCATGCATTTT
1 CTCTAATTCATGCATTTT
50458264 CTCTAATTCATGCATTTT
1 CTCTAATTCATGCATTTT
50458282 C
1 C
50458283 ATAGTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.24, G:0.05, T:0.49
Consensus pattern (18 bp):
CTCTAATTCATGCATTTT
Found at i:50463613 original size:13 final size:13
Alignment explanation
Indices: 50463595--50463621 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50463585 GAAGTAATCG
50463595 CACACGGGCGTGT
1 CACACGGGCGTGT
50463608 CACACGGGCGTGT
1 CACACGGGCGTGT
50463621 C
1 C
50463622 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:50463997 original size:12 final size:12
Alignment explanation
Indices: 50463980--50464004 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
50463970 ATATTTGACT
50463980 TGTTCTTAATTA
1 TGTTCTTAATTA
50463992 TGTTCTTAATTA
1 TGTTCTTAATTA
50464004 T
1 T
50464005 TGTTTTGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.08, G:0.08, T:0.60
Consensus pattern (12 bp):
TGTTCTTAATTA
Found at i:50472385 original size:36 final size:36
Alignment explanation
Indices: 50472342--50472413 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
50472332 TGATGCATGA
*
50472342 TTGTGTTATTTGGTATGATATTGGTTGTATGTATGG
1 TTGTGTTATTTGGTATGAGATTGGTTGTATGTATGG
*
50472378 TTGTGTTATTTGGTTTGAGATTGGTTGTATGTATGG
1 TTGTGTTATTTGGTATGAGATTGGTTGTATGTATGG
50472414 CATGATTTGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.15, C:0.00, G:0.32, T:0.53
Consensus pattern (36 bp):
TTGTGTTATTTGGTATGAGATTGGTTGTATGTATGG
Found at i:50474373 original size:24 final size:24
Alignment explanation
Indices: 50474319--50474387 Score: 86
Period size: 24 Copynumber: 2.9 Consensus size: 24
50474309 GAGCTGATGG
**
50474319 ACAGTAAGCTCTATTGAGCTG-AA
1 ACAGTAAGCTCTAACGAGCTGAAA
* *
50474342 ACAATAAGATCTAACGAGCTGAAA
1 ACAGTAAGCTCTAACGAGCTGAAA
*
50474366 ACAGTAAGCTCTTACGAGCTGA
1 ACAGTAAGCTCTAACGAGCTGA
50474388 TATATCGGTA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
23 17 0.45
24 21 0.55
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (24 bp):
ACAGTAAGCTCTAACGAGCTGAAA
Found at i:50476989 original size:21 final size:20
Alignment explanation
Indices: 50476951--50476990 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
50476941 AGAACCCTGG
*
50476951 AAATTTTTACAAATCATAGA
1 AAATTTTTACAAAACATAGA
*
50476971 AAATTTTTGCATAAACATAG
1 AAATTTTTACA-AAACATAG
50476991 GTCACACACC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.47, C:0.10, G:0.07, T:0.35
Consensus pattern (20 bp):
AAATTTTTACAAAACATAGA
Found at i:50480358 original size:55 final size:55
Alignment explanation
Indices: 50480254--50480359 Score: 137
Period size: 55 Copynumber: 1.9 Consensus size: 55
50480244 CAAAGTTGTA
*
50480254 CACGGGTAGGCCACACGGGCGTGTGCCATGGCCGTGTTCAAATGACAGTGTCATC
1 CACGGGTAGGCCACACGGGCGTGTGCCATGGCCGTGTTCAAAAGACAGTGTCATC
* *
50480309 CACGGGTAGG-CAGCACGGGTGTGTGTCC-TGGCCGTGTT-AATAAGTCAGTGT
1 CACGGGTAGGCCA-CACGGGCGTGTG-CCATGGCCGTGTTCAA-AAGACAGTGT
50480360 TGCCCATGGT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
54 4 0.09
55 39 0.87
56 2 0.04
ACGTcount: A:0.19, C:0.24, G:0.35, T:0.23
Consensus pattern (55 bp):
CACGGGTAGGCCACACGGGCGTGTGCCATGGCCGTGTTCAAAAGACAGTGTCATC
Found at i:50484942 original size:16 final size:16
Alignment explanation
Indices: 50484921--50484962 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
50484911 AAATCCCTAA
50484921 CATTTTCCCCAAATCT
1 CATTTTCCCCAAATCT
*
50484937 CATTTTTTCCCTAAATCT
1 CA--TTTTCCCCAAATCT
50484955 -ATTTTCCC
1 CATTTTCCC
50484963 ATCCCCGAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 7 0.30
16 2 0.09
17 1 0.04
18 13 0.57
ACGTcount: A:0.21, C:0.33, G:0.00, T:0.45
Consensus pattern (16 bp):
CATTTTCCCCAAATCT
Found at i:50484958 original size:17 final size:18
Alignment explanation
Indices: 50484923--50484959 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
50484913 ATCCCTAACA
50484923 TTTTCCCCAAATCTCATT
1 TTTTCCCCAAATCTCATT
*
50484941 TTTTCCCTAAATCT-ATT
1 TTTTCCCCAAATCTCATT
50484958 TT
1 TT
50484960 CCCATCCCCG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTCCCCAAATCTCATT
Found at i:50502375 original size:55 final size:56
Alignment explanation
Indices: 50502310--50502424 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
50502300 AGCATGGCTG
* *
50502310 CCAGATACAGA-AAATGTGACAGAGTCACCAGATACAGATATTTTGTGGCAGT-GCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGA-ACAGATAATTTGTGGCA-TAGCCA
* * *
50502366 CCAGA-ACAGATATATGTGGCAGGGCCACCAGAACAGATAATTTGTGGCATAGCCA
1 CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
50502421 CCAG
1 CCAG
50502425 GACGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 29 0.56
56 22 0.42
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (56 bp):
CCAGATACAGATAAATGTGACAGAGCCACCAGAACAGATAATTTGTGGCATAGCCA
Found at i:50502387 original size:27 final size:27
Alignment explanation
Indices: 50502335--50502424 Score: 119
Period size: 27 Copynumber: 3.2 Consensus size: 27
50502325 GTGACAGAGT
50502335 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATA-TTTGTGGCAGTGC
* *
50502364 CACCAGAACAGATATATGTGGCAGGGC
1 CACCAGAACAGATATTTGTGGCAGTGC
50502391 CACCAGAACAGATAATTTGTGGCA-TAGC
1 CACCAGAACAGAT-ATTTGTGGCAGT-GC
50502419 CACCAG
1 CACCAG
50502425 GACGCTTCCT
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 24 0.44
28 24 0.44
29 7 0.13
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.20
Consensus pattern (27 bp):
CACCAGAACAGATATTTGTGGCAGTGC
Found at i:50502577 original size:28 final size:28
Alignment explanation
Indices: 50502530--50502597 Score: 111
Period size: 28 Copynumber: 2.4 Consensus size: 28
50502520 AAATTAACCC
*
50502530 TAGGGGTATAGA-GGTCATTTTGCATACA
1 TAGGGGTATA-ATGGTAATTTTGCATACA
50502558 TAGGGGTATAATGGTAATTTTGCATACA
1 TAGGGGTATAATGGTAATTTTGCATACA
50502586 TAGGGGTATAAT
1 TAGGGGTATAAT
50502598 AGTACATCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 1 0.03
28 37 0.97
ACGTcount: A:0.31, C:0.07, G:0.28, T:0.34
Consensus pattern (28 bp):
TAGGGGTATAATGGTAATTTTGCATACA
Found at i:50509575 original size:19 final size:19
Alignment explanation
Indices: 50509551--50509589 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
50509541 CACTGAAGAT
*
50509551 TGTTTATGAAGGTGAGCGA
1 TGTTTATGAAGATGAGCGA
*
50509570 TGTTTATGAATATGAGCGA
1 TGTTTATGAAGATGAGCGA
50509589 T
1 T
50509590 TCTTTCAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.05, G:0.31, T:0.36
Consensus pattern (19 bp):
TGTTTATGAAGATGAGCGA
Found at i:50525480 original size:45 final size:45
Alignment explanation
Indices: 50525429--50525543 Score: 144
Period size: 46 Copynumber: 2.5 Consensus size: 45
50525419 ATGCCAATGC
* *
50525429 CATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-ACTGATG
1 CATGTCCCAAACAT-GTCTTACACTGACTACATCTCG-AGACCGATG
* *
50525474 CATGTCCCAAACATGTCTTACACTGGCTTACATCTCGAGGCCGATG
1 CATGTCCCAAACATGTCTTACACTGAC-TACATCTCGAGACCGATG
*
50525520 CATGTCCTAAACATGTCTTACACT
1 CATGTCCCAAACATGTCTTACACT
50525544 AGCTCTTGTC
Statistics
Matches: 62, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
44 12 0.19
45 14 0.23
46 36 0.58
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.28
Consensus pattern (45 bp):
CATGTCCCAAACATGTCTTACACTGACTACATCTCGAGACCGATG
Found at i:50527983 original size:20 final size:20
Alignment explanation
Indices: 50527958--50528068 Score: 66
Period size: 20 Copynumber: 5.5 Consensus size: 20
50527948 AGCGCCACAT
* * *
50527958 CTAGGGAATGTTGTTGACTC
1 CTAGGGAAAGTTGCTAACTC
50527978 CTAGGGAAAGTTGCTAACTC
1 CTAGGGAAAGTTGCTAACTC
* * *
50527998 CTA-TGAAAGATTACTAAACTT
1 CTAGGGAAAG-TTGCT-AACTC
**
50528019 CTAGGGAAAACT-CGTAACTC
1 CTAGGGAAAGTTGC-TAACTC
*
50528039 CTAGGG-AAGATTGATTAACTC
1 CTAGGGAAAG-TTG-CTAACTC
*
50528060 CTAGAGAAA
1 CTAGGGAAA
50528069 ACTATTAATC
Statistics
Matches: 69, Mismatches: 14, Indels: 14
0.71 0.14 0.14
Matches are distributed among these distances:
19 7 0.10
20 36 0.52
21 20 0.29
22 6 0.09
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (20 bp):
CTAGGGAAAGTTGCTAACTC
Found at i:50528069 original size:41 final size:41
Alignment explanation
Indices: 50527992--50528071 Score: 99
Period size: 41 Copynumber: 2.0 Consensus size: 41
50527982 GGAAAGTTGC
* * *
50527992 TAACTCCTATGAAAGATTACTAAACTTCTAGGGAAAACTCG
1 TAACTCCTAGGAAAGATTACTAAACTCCTAGAGAAAACTCG
* *
50528033 TAACTCCTAGGGAAGATTGA-TTAACTCCTAGAGAAAACT
1 TAACTCCTAGGAAAGATT-ACTAAACTCCTAGAGAAAACT
50528072 ATTAATCTCC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 32 0.97
42 1 0.03
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (41 bp):
TAACTCCTAGGAAAGATTACTAAACTCCTAGAGAAAACTCG
Found at i:50529382 original size:93 final size:93
Alignment explanation
Indices: 50529124--50529545 Score: 313
Period size: 95 Copynumber: 4.5 Consensus size: 93
50529114 TTTAGGCTCG
* * * * *
50529124 CTAAATCTAATAGTAGATATACTGCTAAGCCTTTTAAGGCACTTAGCCAAAAATCAATATCTATA
1 CTAAGTCTAATAATAGATATACTGCTAAGCCTATTAAGGCACTTAG-CAAAATTCAATATTTATA
* * * * * **
50529189 GAGCAGACAAT-TCGAGAGGAAATTGTTCA
65 AAGTAGATACTCT-GAGAGGAAACTAATCA
* * * * * * *
50529218 TTAAGTCTAAT-ATCAAATATATTGCTAAGCCTCTTAAGGCA-TGTAGCTAAATTCAACAAAGTT
1 CTAAGTCTAATAAT-AGATATACTGCTAAGCCTATTAAGGCACT-TAGCAAAATTC-A-ATATTT
50529281 ATAAAGTAGATA-TC-GAGAGAAGAAACTAATCA
62 ATAAAGTAGATACTCTGAGAG--GAAACTAATCA
* * *
50529313 CTAAGTGTAATAGA-AGA-ATTACTTCT-AGCCTTTTAAGGCACTTAGCCAAAATTCAATATTTA
1 CTAAGTCTAATA-ATAGATA-TACTGCTAAGCCTATTAAGGCACTTAG-CAAAATTCAATATTTA
* *
50529375 TAAAGTAGATACTCTTAGAGGAAACTACTCA
63 TAAAGTAGATACTCTGAGAGGAAACTAATCA
* * * *
50529406 CTAATTCTAATAATAGATATACTGCTAAGCCTATTAGGGCACTTAGCTAAATTCAATGAAGTTAT
1 CTAAGTCTAATAATAGATATACTGCTAAGCCTATTAAGGCACTTAGCAAAATTCAAT--ATTTAT
* * * * **
50529471 AAAGCAGACACCCTGAGAGGAAATTGCTCA
64 AAAGTAGATACTCTGAGAGGAAACTAATCA
* * * *
50529501 CTAAGTCTAATACTAGATACAATGTTAAGCC-ATTTAAGGCACTTA
1 CTAAGTCTAATAATAGATATACTGCTAAGCCTA-TTAAGGCACTTA
50529546 TCTAAGTTTT
Statistics
Matches: 261, Mismatches: 47, Indels: 39
0.75 0.14 0.11
Matches are distributed among these distances:
92 1 0.00
93 68 0.26
94 77 0.30
95 114 0.44
97 1 0.00
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (93 bp):
CTAAGTCTAATAATAGATATACTGCTAAGCCTATTAAGGCACTTAGCAAAATTCAATATTTATAA
AGTAGATACTCTGAGAGGAAACTAATCA
Found at i:50529504 original size:188 final size:188
Alignment explanation
Indices: 50529124--50529512 Score: 426
Period size: 188 Copynumber: 2.1 Consensus size: 188
50529114 TTTAGGCTCG
* * *
50529124 CTAAATCTAATAGTAG-ATATACTGCTAAGCCTTTTAAGGCACTTAGCCAAAAATCAATATCTAT
1 CTAAGTCTAATAGAAGAAT-TACTTCT-AGCCTTTTAAGGCACTTAGCCAAAAATCAATATCTAT
* * ** * * *
50529188 AGAGCAGACAATTCGAGAGGAAATTGTTCATTAAGTCTAATATCAAATATATTGCTAAGCCTCTT
64 AAAGCAGACAATTCGAGAGGAAACTACTCACTAAGTCTAATATCAAATATACTGCTAAGCCTATT
* * * *
50529253 AAGGCATGTAGCTAAATTCAACAAAGTTATAAAGTAGATATCGAGAGAAGAAACTAATCA
129 AAGGCATGTAGCTAAATTCAACAAAGTTATAAAGCAGACACCCAGAGAAGAAACTAATCA
* * *
50529313 CTAAGTGTAATAGAAGAATTACTTCTAGCCTTTTAAGGCACTTAGCCAAAATTCAATATTTATAA
1 CTAAGTCTAATAGAAGAATTACTTCTAGCCTTTTAAGGCACTTAGCCAAAAATCAATATCTATAA
* * * * * *
50529378 AGTAGA-TACTCTTAGAGGAAACTACTCACTAATTCTAATAAT-AGATATACTGCTAAGCCTATT
66 AGCAGACAATTC-GAGAGGAAACTACTCACTAAGTCTAAT-ATCAAATATACTGCTAAGCCTATT
* ** * * * **
50529441 AGGGCACT-TAGCTAAATTCAATGAAGTTATAAAGCAGACACCCTGAGAGGAAATTGCTCA
129 AAGGCA-TGTAGCTAAATTCAACAAAGTTATAAAGCAGACACCCAGAGAAGAAACTAATCA
50529501 CTAAGTCTAATA
1 CTAAGTCTAATA
50529513 CTAGATACAA
Statistics
Matches: 164, Mismatches: 32, Indels: 9
0.80 0.16 0.04
Matches are distributed among these distances:
187 3 0.02
188 137 0.84
189 22 0.13
190 2 0.01
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (188 bp):
CTAAGTCTAATAGAAGAATTACTTCTAGCCTTTTAAGGCACTTAGCCAAAAATCAATATCTATAA
AGCAGACAATTCGAGAGGAAACTACTCACTAAGTCTAATATCAAATATACTGCTAAGCCTATTAA
GGCATGTAGCTAAATTCAACAAAGTTATAAAGCAGACACCCAGAGAAGAAACTAATCA
Found at i:50541195 original size:90 final size:91
Alignment explanation
Indices: 50541028--50541196 Score: 205
Period size: 90 Copynumber: 1.9 Consensus size: 91
50541018 TGGCGTTGAT
* * * * * *
50541028 ATGAGATTTGCGTGTAAGACCATGTCTGGGACATGGCATCGATGTGAGGCCCCGTATAAGACCAT
1 ATGAGACTTGCGTATAAGACCATATCTGGGACATGGCATCGATATGAGGACCCATATAAGACCAT
50541093 CTCAGGGACATGGCATCGGTACCGAC
66 CTCAGGGACATGGCATCGGTACCGAC
* * * * * *
50541119 ATGAGACTT-CGTATAAGACCATATCTGGGATATGGCATCGGTATGTGTACCCATGTAATACCAT
1 ATGAGACTTGCGTATAAGACCATATCTGGGACATGGCATCGATATGAGGACCCATATAAGACCAT
* *
50541183 GTCGGGGACATGGC
66 CTCAGGGACATGGC
50541197 TTTGACATTT
Statistics
Matches: 64, Mismatches: 14, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
90 56 0.88
91 8 0.12
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.24
Consensus pattern (91 bp):
ATGAGACTTGCGTATAAGACCATATCTGGGACATGGCATCGATATGAGGACCCATATAAGACCAT
CTCAGGGACATGGCATCGGTACCGAC
Found at i:50546379 original size:17 final size:17
Alignment explanation
Indices: 50546357--50546392 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
50546347 ATTCGAATTT
50546357 TACAAGTTCGACAACTC
1 TACAAGTTCGACAACTC
50546374 TACAAGTTCGACAACTC
1 TACAAGTTCGACAACTC
50546391 TA
1 TA
50546393 TGTACTTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.25
Consensus pattern (17 bp):
TACAAGTTCGACAACTC
Found at i:50549432 original size:55 final size:53
Alignment explanation
Indices: 50549307--50549441 Score: 144
Period size: 53 Copynumber: 2.5 Consensus size: 53
50549297 AACTTACCAT
* * * *
50549307 TGCCATGTCTTGACATGGTCTTACGTGGTATCATTGCCTTATGAACTCATTAT
1 TGCCATGTCTTGACATGGTCTTACATGGGATCATTGCCTTATGAACTCATCAA
* * * * * ** *
50549360 TGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGTCTTTTCGTAGTTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGGATCATTGCCTTAT-G-AACTCATCAA
50549415 TGCCATGTCTTGACATGGTCTTACATG
1 TGCCATGTCTTGACATGGTCTTACATG
50549442 ATTTCCTTGC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
53 35 0.53
54 1 0.02
55 30 0.45
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (53 bp):
TGCCATGTCTTGACATGGTCTTACATGGGATCATTGCCTTATGAACTCATCAA
Found at i:50559284 original size:11 final size:11
Alignment explanation
Indices: 50559248--50559303 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
50559238 CATGGTATGT
50559248 ATGATATGCAC
1 ATGATATGCAC
* *
50559259 ATGACATG--T
1 ATGATATGCAC
50559268 ATGATATGCAC
1 ATGATATGCAC
*
50559279 ATGATATG--T
1 ATGATATGCAC
50559288 ATGATATGCAC
1 ATGATATGCAC
50559299 ATGAT
1 ATGAT
50559304 GTAATCACAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50559303 original size:20 final size:20
Alignment explanation
Indices: 50559237--50559303 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
50559227 ATTTTGATAA
*
50559237 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
50559257 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
50559277 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50559297 ACATGAT
1 ACATGAT
50559304 GTAATCACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50559379 original size:24 final size:24
Alignment explanation
Indices: 50559352--50559452 Score: 163
Period size: 24 Copynumber: 4.3 Consensus size: 24
50559342 GGAGGAAGTG
50559352 TAAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
50559376 TAAAAGGGCTTATGCCCTAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
*
50559400 T-ATAGGGCTTATG-CCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
50559422 T-AAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTAT
50559445 TAAAAGGG
1 TAAAAGGG
50559453 GCTAGGCTTC
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
22 20 0.28
23 21 0.30
24 30 0.42
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (24 bp):
TAAAAGGGCTTATGCCCCAGTTAT
Found at i:50559410 original size:23 final size:23
Alignment explanation
Indices: 50559354--50559448 Score: 156
Period size: 23 Copynumber: 4.1 Consensus size: 23
50559344 AGGAAGTGTA
50559354 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
50559377 AAAAGGGCTTATGCCCTAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
*
50559401 ATAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50559423 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50559446 AAA
1 AAA
50559449 AGGGGCTAGG
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
22 20 0.30
23 24 0.36
24 22 0.33
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:50559435 original size:45 final size:47
Alignment explanation
Indices: 50559356--50559446 Score: 159
Period size: 45 Copynumber: 2.0 Consensus size: 47
50559346 GAAGTGTAAA
*
50559356 AGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCTAGTTATTAT
1 AGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAT
50559403 AGGGCTTATG-CCCAGTTATT-AAAGGGCTTATGCCCCAGTTATTA
1 AGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTA
50559447 AAAGGGGCTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
45 23 0.53
46 10 0.23
47 10 0.23
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.33
Consensus pattern (47 bp):
AGGGCTTATGCCCCAGTTATTAAAAGGGCTTATGCCCCAGTTATTAT
Found at i:50559717 original size:31 final size:31
Alignment explanation
Indices: 50559663--50559723 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
50559653 CGTTTACAGT
*
50559663 AAAGGCTTCGGCCCAGTAATATGAGATATGG
1 AAAGGCTTCGGCCCAGTAATATGAAATATGG
**
50559694 AAAGGCTTCGGCCCAGTGTTATGAAATATG
1 AAAGGCTTCGGCCCAGTAATATGAAATATG
50559724 AAGTGTGAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAATATGG
Found at i:50569625 original size:20 final size:20
Alignment explanation
Indices: 50569559--50569625 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
50569549 ATTTTGATAA
*
50569559 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
50569579 ACATGACATGTATTATATGC
1 ACATGATATGTATGATATGC
50569599 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50569619 ACATGAT
1 ACATGAT
50569626 GTAATCACAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50569741 original size:45 final size:47
Alignment explanation
Indices: 50569677--50569771 Score: 158
Period size: 45 Copynumber: 2.1 Consensus size: 47
50569667 GTAAGTGTAA
*
50569677 AAAGGGCTTATGCCCCAGTTA-TTAAAGGGCTT-ATGCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTTAAAGGGCTTGATCCCCAGTTATT
*
50569722 AAAGGGCTTATGCCCCAGTTATTTAAAGGGCTTGTTCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTTAAAGGGCTTGATCCCCAGTTATT
50569769 AAA
1 AAA
50569772 AGAGGCTAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
45 21 0.46
46 11 0.24
47 14 0.30
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTTAAAGGGCTTGATCCCCAGTTATT
Found at i:50569773 original size:24 final size:23
Alignment explanation
Indices: 50569677--50569771 Score: 156
Period size: 23 Copynumber: 4.1 Consensus size: 23
50569667 GTAAGTGTAA
50569677 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50569700 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50569722 AAAGGGCTTATGCCCCAGTTATTT
1 AAAGGGCTTATGCCCCAGTTA-TT
* *
50569746 AAAGGGCTTGTTCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50569769 AAA
1 AAA
50569772 AGAGGCTAGG
Statistics
Matches: 68, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
22 22 0.32
23 25 0.37
24 21 0.31
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:50575410 original size:119 final size:119
Alignment explanation
Indices: 50575193--50575429 Score: 420
Period size: 119 Copynumber: 2.0 Consensus size: 119
50575183 GGAATCGGTT
*
50575193 AAAAGAGGCGACGGATCGACAAAAGTCTTATGCCGATGTGAAGCGTAAGGATATTGAATATGCAG
1 AAAAGAGGCGACGGATCGACAAAAGTCTTATGCCGATCTGAAGCGTAAGGATATTGAATATGCAG
50575258 TAGGGGACATGGTCTTTTTGAAAGTTTCACCTTGGAAGAAGATTTTGAGATTTG
66 TAGGGGACATGGTCTTTTTGAAAGTTTCACCTTGGAAGAAGATTTTGAGATTTG
*
50575312 AAAAGAGGCGACGGATCGACAAAAGTCTTATGCCGATCTGAAGCGTAAGGATATTGAATATGCGG
1 AAAAGAGGCGACGGATCGACAAAAGTCTTATGCCGATCTGAAGCGTAAGGATATTGAATATGCAG
** * *
50575377 TAGGGGACATGGTCTTTTTGAAAGTTTTGCCTTGGAATAAGATTTTGTGATTT
66 TAGGGGACATGGTCTTTTTGAAAGTTTCACCTTGGAAGAAGATTTTGAGATTT
50575430 AGTAAGAAGG
Statistics
Matches: 112, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
119 112 1.00
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (119 bp):
AAAAGAGGCGACGGATCGACAAAAGTCTTATGCCGATCTGAAGCGTAAGGATATTGAATATGCAG
TAGGGGACATGGTCTTTTTGAAAGTTTCACCTTGGAAGAAGATTTTGAGATTTG
Found at i:50576317 original size:174 final size:174
Alignment explanation
Indices: 50576024--50576370 Score: 649
Period size: 174 Copynumber: 2.0 Consensus size: 174
50576014 GGCTAGGTGC
50576024 CCTTATATAAAGTTGTGGGTAACATCCATCACAAAAAGAGCTGTAGTAAAGTGGCAAGGGTGACG
1 CCTTATATAAAGTTGTGGGTAACATCCATCACAAAAAGAGCTGTAGTAAAGTGGCAAGGGTGACG
*
50576089 CCACTAAGTTCCTAAAAAGGTGGCGTGTGGAGCATAAGGGAAGACCTGGGATCGATTCCCTGTGT
66 CCACTAAGTTCCTAAAAAGGTGGCGTGTGGAGCATAAGGGAAGACCTAGGATCGATTCCCTGTGT
* * *
50576154 TTGCAAATAAGAGTATTTATTTTTATGTGCTGGAAGGGTAAGTA
131 TGGCAAATAAGAGTATATATTTTTATGTGCAGGAAGGGTAAGTA
50576198 CCTTATATAAAGTTGTGGGTAACATCCATCACAAAAAGAGCTGTAGTAAAGTGGCAAGGGTGACG
1 CCTTATATAAAGTTGTGGGTAACATCCATCACAAAAAGAGCTGTAGTAAAGTGGCAAGGGTGACG
50576263 CCACTAAGTTCCTAAAAAGGTGGCGTGTGGAGCATAAGGGAAGACCTAGGATCGATTCCCTGTGT
66 CCACTAAGTTCCTAAAAAGGTGGCGTGTGGAGCATAAGGGAAGACCTAGGATCGATTCCCTGTGT
*
50576328 TGGCAAATAAGTGTATATATTTTTATGTGCAGGAAGGGTAAGT
131 TGGCAAATAAGAGTATATATTTTTATGTGCAGGAAGGGTAAGT
50576371 GTTGGAACCT
Statistics
Matches: 168, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
174 168 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (174 bp):
CCTTATATAAAGTTGTGGGTAACATCCATCACAAAAAGAGCTGTAGTAAAGTGGCAAGGGTGACG
CCACTAAGTTCCTAAAAAGGTGGCGTGTGGAGCATAAGGGAAGACCTAGGATCGATTCCCTGTGT
TGGCAAATAAGAGTATATATTTTTATGTGCAGGAAGGGTAAGTA
Found at i:50579785 original size:25 final size:25
Alignment explanation
Indices: 50579756--50579803 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
50579746 TTTTAACATG
* *
50579756 AAAATGACCATTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50579781 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50579804 GTTTATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50579813 original size:18 final size:18
Alignment explanation
Indices: 50579790--50579827 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
50579780 AAAAATGACC
50579790 ATTATACCCCTAGGGTTT
1 ATTATACCCCTAGGGTTT
50579808 ATTATACCCCTAGGGTTT
1 ATTATACCCCTAGGGTTT
50579826 AT
1 AT
50579828 GTATGAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (18 bp):
ATTATACCCCTAGGGTTT
Found at i:50579905 original size:11 final size:11
Alignment explanation
Indices: 50579869--50579924 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
50579859 CATGGTATGT
50579869 ATGATATGCAC
1 ATGATATGCAC
* *
50579880 ATGACATG--T
1 ATGATATGCAC
50579889 ATGATATGCAC
1 ATGATATGCAC
*
50579900 ATGATATG--T
1 ATGATATGCAC
50579909 ATGATATGCAC
1 ATGATATGCAC
50579920 ATGAT
1 ATGAT
50579925 GTAAATCACA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:50579924 original size:20 final size:20
Alignment explanation
Indices: 50579858--50579924 Score: 116
Period size: 20 Copynumber: 3.4 Consensus size: 20
50579848 ATTTTGATAA
*
50579858 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
*
50579878 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
50579898 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50579918 ACATGAT
1 ACATGAT
50579925 GTAAATCACA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50580048 original size:45 final size:47
Alignment explanation
Indices: 50579974--50580093 Score: 217
Period size: 45 Copynumber: 2.6 Consensus size: 47
50579964 GGAGGAAGTG
50579974 TAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
50580021 T-AAAGGGCTTATG-CCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
1 TAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
*
50580066 TAAAAGGGCTTTTGCCCCAGTTATTAAA
1 TAAAAGGGCTTATGCCCCAGTTATTAAA
50580094 AGAGGCTAGG
Statistics
Matches: 70, Mismatches: 1, Indels: 4
0.93 0.01 0.05
Matches are distributed among these distances:
45 33 0.47
46 23 0.33
47 14 0.20
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (47 bp):
TAAAAGGGCTTATGCCCCAGTTATTAAAGGGCTTATGCCCCAGTTAT
Found at i:50580095 original size:24 final size:23
Alignment explanation
Indices: 50579976--50580093 Score: 211
Period size: 23 Copynumber: 5.1 Consensus size: 23
50579966 AGGAAGTGTA
50579976 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50579999 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50580022 AAAGGGCTTATG-CCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
50580044 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
50580067 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
50580091 AAA
1 AAA
50580094 AGAGGCTAGG
Statistics
Matches: 92, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
22 22 0.24
23 48 0.52
24 22 0.24
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:50580346 original size:31 final size:31
Alignment explanation
Indices: 50580311--50580371 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
50580301 TTACAGTAAA
50580311 GGCTTCGGCCCAGTAATATGAAATATGAAAG
1 GGCTTCGGCCCAGTAATATGAAATATGAAAG
**
50580342 GGCTTCGGCCCAGTGTTATGAAATATGAAA
1 GGCTTCGGCCCAGTAATATGAAATATGAAA
50580372 TATGAAAAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.25
Consensus pattern (31 bp):
GGCTTCGGCCCAGTAATATGAAATATGAAAG
Found at i:50591039 original size:14 final size:15
Alignment explanation
Indices: 50591010--50591044 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
50591000 TTTAAATAAT
*
50591010 AATAAAAATACTAAA
1 AATAAAAATACAAAA
50591025 AATAAAAATA-AAAA
1 AATAAAAATACAAAA
50591039 AATAAA
1 AATAAA
50591045 GGAAACAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (15 bp):
AATAAAAATACAAAA
Found at i:50594264 original size:46 final size:46
Alignment explanation
Indices: 50594100--50594272 Score: 181
Period size: 46 Copynumber: 3.7 Consensus size: 46
50594090 AACCTGCCCC
* * * * *
50594100 TAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * * *
50594146 TAAATGAAATCGGACTCAACTCAACAAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
50594194 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
50594239 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
50594273 TACTCAACCA
Statistics
Matches: 102, Mismatches: 18, Indels: 14
0.76 0.13 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 57 0.56
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:50594269 original size:93 final size:93
Alignment explanation
Indices: 50594105--50594273 Score: 266
Period size: 93 Copynumber: 1.8 Consensus size: 93
50594095 GCCCCTAAGT
* * *
50594105 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAATGAAATCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAAATCGGACTCAACTCAA
50594170 CAAGTTCGGATGCCTAGTTACATCTCAC
66 CAAGTTCGGATGCCTAGTTACATCTCAC
* * * *
50594198 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAAATCGGACTCAACTCAA
*
50594263 CGAGTTCGGAT
66 CAAGTTCGGAT
50594274 ACTCAACCAT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 68 1.00
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAAATCGGACTCAACTCAA
CAAGTTCGGATGCCTAGTTACATCTCAC
Found at i:50602292 original size:43 final size:43
Alignment explanation
Indices: 50602231--50602318 Score: 176
Period size: 43 Copynumber: 2.0 Consensus size: 43
50602221 ACCCCCTCCT
50602231 TATCCCCAACCGATTCCCATAGCTCCTCAAGGTGTGGAATTGG
1 TATCCCCAACCGATTCCCATAGCTCCTCAAGGTGTGGAATTGG
50602274 TATCCCCAACCGATTCCCATAGCTCCTCAAGGTGTGGAATTGG
1 TATCCCCAACCGATTCCCATAGCTCCTCAAGGTGTGGAATTGG
50602317 TA
1 TA
50602319 AGATTGAATA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (43 bp):
TATCCCCAACCGATTCCCATAGCTCCTCAAGGTGTGGAATTGG
Found at i:50609580 original size:14 final size:14
Alignment explanation
Indices: 50609563--50609603 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
50609553 AAAGTAGTCT
50609563 TAAAAAAATAAAAG
1 TAAAAAAATAAAAG
*
50609577 TAAAAACATAAAA-
1 TAAAAAAATAAAAG
*
50609590 T-AATAAATAAAAG
1 TAAAAAAATAAAAG
50609603 T
1 T
50609604 TTTTAAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
12 9 0.39
13 2 0.09
14 12 0.52
ACGTcount: A:0.73, C:0.02, G:0.05, T:0.20
Consensus pattern (14 bp):
TAAAAAAATAAAAG
Found at i:50629641 original size:27 final size:27
Alignment explanation
Indices: 50629611--50629788 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50629601 ATATTGAGTC
* * * *
50629611 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
50629638 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50629665 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
50629693 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
50629720 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
50629747 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
50629774 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50629789 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:50629750 original size:82 final size:81
Alignment explanation
Indices: 50629632--50629787 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50629622 TGCTATATAA
* *
50629632 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
50629697 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
50629714 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
50629778 CACTTAGTGC
65 CACTTAGTGC
50629788 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:50634240 original size:19 final size:19
Alignment explanation
Indices: 50634213--50634251 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
50634203 AATAAATTAC
*
50634213 TCATATTAGTTAATTGAGT
1 TCATATTAGTTAATTAAGT
*
50634232 TCATCTTAGTTAATTAAGT
1 TCATATTAGTTAATTAAGT
50634251 T
1 T
50634252 GCTAGAATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.49
Consensus pattern (19 bp):
TCATATTAGTTAATTAAGT
Found at i:50634260 original size:54 final size:54
Alignment explanation
Indices: 50634187--50634315 Score: 170
Period size: 54 Copynumber: 2.4 Consensus size: 54
50634177 CTTAGTTTAA
* * *
50634187 TTAAGTAAGTTGCTGGAATAAATTACTCAT-ATTAGTTAATTGAGTTCATCTTAG
1 TTAATTAAGTTGCTGGAATAAATTACTCATGA-TAGTTAATTAAGTTCATCATAG
* * * *
50634241 TTAATTAAGTTGCTAGAATAAATTATTCATGATGGTTAATTAAGTTTATCATAG
1 TTAATTAAGTTGCTGGAATAAATTACTCATGATAGTTAATTAAGTTCATCATAG
*
50634295 TTAATTTAGTTGCTGGAATAA
1 TTAATTAAGTTGCTGGAATAA
50634316 TTTAATGATG
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
54 64 0.98
55 1 0.02
ACGTcount: A:0.35, C:0.07, G:0.16, T:0.42
Consensus pattern (54 bp):
TTAATTAAGTTGCTGGAATAAATTACTCATGATAGTTAATTAAGTTCATCATAG
Found at i:50634542 original size:20 final size:20
Alignment explanation
Indices: 50634519--50634572 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
50634509 AGTTTTTCCC
*
50634519 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTCACATG
* ***
50634539 AGCTTAATTTAGCTCGTTTG
1 AGCTCAATTTAGCTCACATG
50634559 AGCTCAATTTAGCT
1 AGCTCAATTTAGCT
50634573 TACTTTAGCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.37
Consensus pattern (20 bp):
AGCTCAATTTAGCTCACATG
Found at i:50634554 original size:30 final size:30
Alignment explanation
Indices: 50634519--50634588 Score: 90
Period size: 30 Copynumber: 2.3 Consensus size: 30
50634509 AGTTTTTCCC
50634519 AGCTCGATTT-AGCTCACA-TGAGCTTAATTT
1 AGCTCG-TTTGAGCTCA-ATTGAGCTTAATTT
* *
50634549 AGCTCGTTTGAGCTCAATTTAGCTTACTTT
1 AGCTCGTTTGAGCTCAATTGAGCTTAATTT
50634579 AGCTCGTTTG
1 AGCTCGTTTG
50634589 GCTTGGCTTG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 4 0.11
30 32 0.89
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.40
Consensus pattern (30 bp):
AGCTCGTTTGAGCTCAATTGAGCTTAATTT
Found at i:50634582 original size:20 final size:20
Alignment explanation
Indices: 50634519--50634583 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
50634509 AGTTTTTCCC
* * * *
50634519 AGCTCGATTTAGCTCACATG
1 AGCTCAATTTAGCTTACTTT
*
50634539 AGCTTAATTTAGC-T-CGTTT
1 AGCTCAATTTAGCTTAC-TTT
50634558 GAGCTCAATTTAGCTTACTTT
1 -AGCTCAATTTAGCTTACTTT
50634579 AGCTC
1 AGCTC
50634584 GTTTGGCTTG
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
18 1 0.03
19 1 0.03
20 28 0.80
21 4 0.11
22 1 0.03
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (20 bp):
AGCTCAATTTAGCTTACTTT
Found at i:50637151 original size:17 final size:15
Alignment explanation
Indices: 50637131--50637169 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 15
50637121 GCGAGCGAGA
50637131 AAATGAACATGAAAAAG
1 AAATGAA-A-GAAAAAG
50637148 AAATGAAAGAAAAAG
1 AAATGAAAGAAAAAG
50637163 AAGATGA
1 AA-ATGA
50637170 GTGGGAGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 9 0.43
16 5 0.24
17 7 0.33
ACGTcount: A:0.67, C:0.03, G:0.21, T:0.10
Consensus pattern (15 bp):
AAATGAAAGAAAAAG
Found at i:50643753 original size:251 final size:251
Alignment explanation
Indices: 50643310--50643807 Score: 978
Period size: 251 Copynumber: 2.0 Consensus size: 251
50643300 GGCAAGAACC
50643310 CTATATTTTGGGGAATTTTGAGTCGATTATATGTGGCCAATAAAAGAACCGATTAAATGAAGAGT
1 CTATATTTTGGGGAATTTTGAGTCGATTATATGTGGCCAATAAAAGAACCGATTAAATGAAGAGT
50643375 TCTTGGAGTTTGAATCAAGGCTGAAACACAAACAAGAACAGCAAAATATTAGATGATGAATCGGC
66 TCTTGGAGTTTGAATCAAGGCTGAAACACAAACAAGAACAGCAAAATATTAGATGATGAATCGGC
50643440 ACAAGTAGGAATAAAGAAACAAATCGAAACAGCAAGAAATAAAGAAAAGTCCTAAGAACCCTTGA
131 ACAAGTAGGAATAAAGAAACAAATCGAAACAGCAAGAAATAAAGAAAAGTCCTAAGAACCCTTGA
50643505 ATTCCCGAAAGAATTCACAAATTCCTTCAAACGGCTCTAATCTCCCCTCCAAAGAA
196 ATTCCCGAAAGAATTCACAAATTCCTTCAAACGGCTCTAATCTCCCCTCCAAAGAA
50643561 CTATATTTTGGGGAATTTTGAGTCGATTATATGTGGCCAATAAAAGAACCGATTAAATGAAGAGT
1 CTATATTTTGGGGAATTTTGAGTCGATTATATGTGGCCAATAAAAGAACCGATTAAATGAAGAGT
*
50643626 TCTTGGAGTTTGAATCAAGGCTGAAACACAAACAAGAACAGCAAATTATTAGATGATGAATCGGC
66 TCTTGGAGTTTGAATCAAGGCTGAAACACAAACAAGAACAGCAAAATATTAGATGATGAATCGGC
50643691 ACAAGTAGGAATAAAGAAACAAATCGAAACAGCAAGAAATAAAGAAAAGTCCTAAGAACCCTTGA
131 ACAAGTAGGAATAAAGAAACAAATCGAAACAGCAAGAAATAAAGAAAAGTCCTAAGAACCCTTGA
*
50643756 ATTCTCGAAAGAATTCACAAATTCCTTCAAACGGCTCTAATCTCCCCTCCAA
196 ATTCCCGAAAGAATTCACAAATTCCTTCAAACGGCTCTAATCTCCCCTCCAA
50643808 GGAATATCGA
Statistics
Matches: 245, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
251 245 1.00
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.23
Consensus pattern (251 bp):
CTATATTTTGGGGAATTTTGAGTCGATTATATGTGGCCAATAAAAGAACCGATTAAATGAAGAGT
TCTTGGAGTTTGAATCAAGGCTGAAACACAAACAAGAACAGCAAAATATTAGATGATGAATCGGC
ACAAGTAGGAATAAAGAAACAAATCGAAACAGCAAGAAATAAAGAAAAGTCCTAAGAACCCTTGA
ATTCCCGAAAGAATTCACAAATTCCTTCAAACGGCTCTAATCTCCCCTCCAAAGAA
Found at i:50644197 original size:55 final size:55
Alignment explanation
Indices: 50644119--50644227 Score: 209
Period size: 55 Copynumber: 2.0 Consensus size: 55
50644109 GCCGAATTTT
*
50644119 ACATGTAATGCTCCTAAAGATTAAAAAATTAAATTAAACAAGTAGGATGTTTACG
1 ACATGTAATGCTCCTAAAGATTAAAAAATTAAATTAAACAAGTAAGATGTTTACG
50644174 ACATGTAATGCTCCTAAAGATTAAAAAATTAAATTAAACAAGTAAGATGTTTAC
1 ACATGTAATGCTCCTAAAGATTAAAAAATTAAATTAAACAAGTAAGATGTTTAC
50644228 AAATTGGGCC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.47, C:0.11, G:0.13, T:0.29
Consensus pattern (55 bp):
ACATGTAATGCTCCTAAAGATTAAAAAATTAAATTAAACAAGTAAGATGTTTACG
Found at i:50644777 original size:35 final size:32
Alignment explanation
Indices: 50644717--50644799 Score: 87
Period size: 35 Copynumber: 2.5 Consensus size: 32
50644707 ATAAATTGAG
* *
50644717 AGAAGAAA-AAAAAGAAATGATAGAAAATGAAA
1 AGAA-AAAGAAAAAGAAATGAAAGAAAAAGAAA
50644749 TAGAAAAAGAAAAAGACACATGAAAGAAAAAGAAA
1 -AGAAAAAGAAAAAGA-A-ATGAAAGAAAAAGAAA
*
50644784 ATGAAAAAGAGAAAGA
1 A-GAAAAAGAAAAAGA
50644800 TTGTAAGATT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
32 3 0.07
33 11 0.26
34 2 0.05
35 27 0.63
ACGTcount: A:0.71, C:0.02, G:0.19, T:0.07
Consensus pattern (32 bp):
AGAAAAAGAAAAAGAAATGAAAGAAAAAGAAA
Found at i:50647437 original size:15 final size:15
Alignment explanation
Indices: 50647417--50647464 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
50647407 TCAAAGATGG
50647417 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
50647432 GTTTATGTAGATGGA
1 GTTTATGGATATGAA
*
50647447 -TTTATGGATATAAA
1 GTTTATGGATATGAA
50647461 GTTT
1 GTTT
50647465 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:50647444 original size:29 final size:29
Alignment explanation
Indices: 50647411--50647470 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
50647401 AAGGATTCAA
* *
50647411 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGATTTATGGATATAAAGTTTATGT
*
50647440 AGATGGATTTATGGATATAAAGTTTTTGT
1 AGATGGATTTATGGATATAAAGTTTATGT
50647469 AG
1 AG
50647471 GTTTGGTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.30, C:0.00, G:0.28, T:0.42
Consensus pattern (29 bp):
AGATGGATTTATGGATATAAAGTTTATGT
Found at i:50648489 original size:14 final size:14
Alignment explanation
Indices: 50648447--50648491 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
50648437 TTAAAGAAGC
50648447 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
50648461 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
50648474 AACTCATTTAATTA
1 AACTCATTAAATTA
50648488 AACT
1 AACT
50648492 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:50649299 original size:8 final size:8
Alignment explanation
Indices: 50649286--50649311 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
50649276 TAAGGTGAAA
50649286 AGATGGAT
1 AGATGGAT
50649294 AGATGGAT
1 AGATGGAT
50649302 AGATGGAT
1 AGATGGAT
50649310 AG
1 AG
50649312 GTGAACGCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.23
Consensus pattern (8 bp):
AGATGGAT
Found at i:50651516 original size:13 final size:13
Alignment explanation
Indices: 50651498--50651526 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
50651488 CGGCTAACCT
50651498 ACATAATTAAATA
1 ACATAATTAAATA
50651511 ACATAATTAAATA
1 ACATAATTAAATA
50651524 ACA
1 ACA
50651527 CACAACTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:50655710 original size:27 final size:26
Alignment explanation
Indices: 50655679--50655856 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
50655669 TAAATTGTAC
50655679 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
50655706 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
50655732 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
50655760 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
50655788 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
50655815 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
50655842 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50655857 GACTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:50655795 original size:82 final size:81
Alignment explanation
Indices: 50655680--50655835 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
50655670 AAATTGTACA
* *
50655680 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50655744 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
50655761 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50655826 TGCGAGTTGA
65 TGCGAATTGA
50655836 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50655847 original size:82 final size:81
Alignment explanation
Indices: 50655676--50655856 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
50655666 GATTAAATTG
* *
50655676 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50655741 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
50655757 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50655821 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50655839 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50655857 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50662623 original size:47 final size:47
Alignment explanation
Indices: 50662554--50662692 Score: 251
Period size: 47 Copynumber: 3.0 Consensus size: 47
50662544 TGAAATGATA
**
50662554 GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAGGGTGTATATAT
1 GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATAT
50662601 GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATAT
1 GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATAT
*
50662648 GTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATAT
1 GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATAT
50662693 GGATTCTTAG
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.31, C:0.11, G:0.31, T:0.27
Consensus pattern (47 bp):
GTGATAAGGCCTAATGGCCGACGTGATGAATGTGAAAGTGTATATAT
Found at i:50663107 original size:47 final size:47
Alignment explanation
Indices: 50663041--50664081 Score: 1814
Period size: 47 Copynumber: 22.1 Consensus size: 47
50663031 GAAATGATAG
* * *
50663041 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATAGGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
* * *
50663088 TAAGGCCTAATAGCGGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
* * *
50663135 TAAGGCCTAATGGCGGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
* ** *
50663182 TAAGGCCAAATGATCGATGTGATGAATGTGAAAGTGTATATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTG----TATATATGTGA
50663233 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663280 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663327 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663374 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663421 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663468 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663515 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663562 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663609 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663656 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663703 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663750 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663797 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663844 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50663891 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
*
50663938 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
*
50663985 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
* * * * * * * * * *
50664031 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
50664078 TAAG
1 TAAG
50664082 TCCCGAAGGG
Statistics
Matches: 964, Mismatches: 25, Indels: 10
0.96 0.03 0.01
Matches are distributed among these distances:
46 40 0.04
47 882 0.91
51 42 0.04
ACGTcount: A:0.31, C:0.08, G:0.32, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAGAGTGTATATATGTGA
Found at i:50666962 original size:21 final size:21
Alignment explanation
Indices: 50666937--50666987 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
50666927 ATATTTGAGA
50666937 AGGAAGCTGTTGCT-ATAGAAG
1 AGGAAGCTGTTGCTGA-AGAAG
*
50666958 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGCTGTTGCTGAAGAAG
*
50666979 AAGAAGCTG
1 AGGAAGCTG
50666988 CTGAAAATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 25 0.96
22 1 0.04
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.22
Consensus pattern (21 bp):
AGGAAGCTGTTGCTGAAGAAG
Found at i:50668694 original size:37 final size:37
Alignment explanation
Indices: 50668633--50668711 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
50668623 TTATTACGAA
* * *
50668633 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGAACAAAATCTCCACACGAAGTCATCGG
*
50668670 GTCTTACCCGAACAAAAT-TCCCACACGTAGTCATCGG
1 GTCTTACCCGAACAAAATCT-CCACACGAAGTCATCGG
50668707 GTCTT
1 GTCTT
50668712 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
36 1 0.03
37 36 0.97
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGAACAAAATCTCCACACGAAGTCATCGG
Found at i:50668908 original size:47 final size:47
Alignment explanation
Indices: 50668830--50668997 Score: 246
Period size: 47 Copynumber: 3.6 Consensus size: 47
50668820 CCCTTCGGGA
* * * * *
50668830 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
* * *
50668877 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
**
50668924 CTTATCACATATATACACCCTCACATTCATCACGTCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
50668971 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
50668998 TATTCAAATA
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 106 1.00
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACGTCGGCCATTAGGC
Found at i:50671565 original size:14 final size:15
Alignment explanation
Indices: 50671546--50671577 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
50671536 ATAAAAAAAT
50671546 AAAAGGAGGAG-AAG
1 AAAAGGAGGAGAAAG
50671560 AAAAGGAGGAGAAAG
1 AAAAGGAGGAGAAAG
50671575 AAA
1 AAA
50671578 TATCATGCAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (15 bp):
AAAAGGAGGAGAAAG
Found at i:50675166 original size:7 final size:7
Alignment explanation
Indices: 50675154--50675181 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
50675144 GTTGATGGGA
50675154 TGGTGAG
1 TGGTGAG
50675161 TGGTGAG
1 TGGTGAG
50675168 TGGTGAG
1 TGGTGAG
50675175 TGGTGAG
1 TGGTGAG
50675182 GGATGATTGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.00, G:0.57, T:0.29
Consensus pattern (7 bp):
TGGTGAG
Found at i:50677217 original size:50 final size:49
Alignment explanation
Indices: 50677104--50677279 Score: 199
Period size: 50 Copynumber: 3.5 Consensus size: 49
50677094 CTAGTACGCA
* **
50677104 TAGTAGCCTGCACTTAGTACTACACATGAAACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
* ** * *
50677153 TAGTATCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCCGGTACACG
* * * * *
50677203 TAGTAGCCTGCACTTAATACTACACACGTGATCGAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTACACG
*
50677254 TGGTAGCCTGCACTTAGTACTACACA
1 TAGTAGCCTGCACTTAGTACTACACA
50677280 TGCGACCTCA
Statistics
Matches: 105, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 29 0.28
50 43 0.41
51 33 0.31
ACGTcount: A:0.30, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCCGGTACACG
Found at i:50677287 original size:101 final size:99
Alignment explanation
Indices: 50677104--50677287 Score: 244
Period size: 101 Copynumber: 1.8 Consensus size: 99
50677094 CTAGTACGCA
* * *
50677104 TAGTAGCCTGCACTTAGTACTACACATGAAACCAATTATCCGGTACACGTAGTATCCTGCACTTA
1 TAGTAGCCTGCACTTAATACTACACATGAAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
*
50677169 GTACTACACACGTGACCTAACCATCTGATACACG
66 GTACTACACACGCGACCTAACCATCTGATACACG
* * * * *
50677203 TAGTAGCCTGCACTTAATACTACACACGTG-ATCGAAGTTATCGGGTACGCATGGTAGCCTGCAC
1 TAGTAGCCTGCACTTAATACTACACA--TGAAACCAA-TTATCCGGTACACATAGTAGCCTGCAC
*
50677267 TTAGTACTACACATGCGACCT
63 TTAGTACTACACACGCGACCT
50677288 CACAATAGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
99 25 0.35
100 4 0.06
101 43 0.60
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (99 bp):
TAGTAGCCTGCACTTAATACTACACATGAAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCTAACCATCTGATACACG
Found at i:50684286 original size:40 final size:40
Alignment explanation
Indices: 50684231--50684459 Score: 256
Period size: 40 Copynumber: 5.8 Consensus size: 40
50684221 TGGATGATAA
*
50684231 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAG-TAGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCTAGCTA-CTAATT
50684271 CCGGGCTAAGTCCCGAAGGCATTTGTG-TGAGCTACTAATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGCTACTAATT
* *
50684311 CCTGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTACTAAT-T
* * * * *
50684351 CCGGGCTAAGTCCCAAAGGCA-TTGTGCGAGTTA-TTATA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTACTAATT
* * *
50684389 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT-ATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTACTAAT-T
*
50684429 CCGGGCTAAGTCCCGAAGGCATTTGAGCTAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAG
50684460 TGGCTATATC
Statistics
Matches: 169, Mismatches: 11, Indels: 18
0.85 0.06 0.09
Matches are distributed among these distances:
38 21 0.12
39 29 0.17
40 115 0.68
41 4 0.02
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCTACTAATT
Found at i:50684415 original size:78 final size:78
Alignment explanation
Indices: 50684230--50684451 Score: 279
Period size: 78 Copynumber: 2.8 Consensus size: 78
50684220 TTGGATGATA
* *
50684230 ACCGGGCTAAGTCCCG-AGAGCATTTGAGCTAGTAGCTA-ATTCCGGGCTAAGTCCCGAAGGCAT
1 ACCGGGCTAAGTCCCGAAG-GCATTTGTGCAAGTA-CTATA-TCCGGGCTAAGTCCCGAAGGCA-
*
50684293 TTGTGTGAGCTACTAAT
62 TTGTGCGAGCTACTAAT
* * * *
50684310 TCCTGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTATATCCGGGCTAAGTCCCAAAGGCATTG
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCCGGGCTAAGTCCCGAAGGCATTG
* *
50684375 TGCGAGTTA-TTAT
65 TGCGAGCTACTAAT
*
50684388 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCCGAAGGCATT
1 ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TACTATATCCGGGCTAAGTCCCGAAGGCATT
50684452 TGAGCTAGTG
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
78 61 0.49
79 10 0.08
80 49 0.39
81 5 0.04
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (78 bp):
ACCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTACTATATCCGGGCTAAGTCCCGAAGGCATTGT
GCGAGCTACTAAT
Found at i:50687845 original size:262 final size:262
Alignment explanation
Indices: 50687380--50687902 Score: 1010
Period size: 262 Copynumber: 2.0 Consensus size: 262
50687370 TGCTTTTCAG
* *
50687380 AAAAAAATGACCCTAGGGGTGAAATCGTAATTTTACATGCATAAGGGTATTTCAGTAATTATTAC
1 AAAAAAATAACCCTAGGGGTAAAATCGTAATTTTACATGCATAAGGGTATTTCAGTAATTATTAC
50687445 CTATTGCTAAGGTTTCATGATCATTCTAATGTTTACCAAGCAATCAGGAGTACTTACCTCGTCTT
66 CTATTGCTAAGGTTTCATGATCATTCTAATGTTTACCAAGCAATCAGGAGTACTTACCTCGTCTT
50687510 TTTACCAAAGTGGGCCCGTTGGCCCATTGGCCCATTAAGCCCAAAAATATCGTTGTGCACGAAAT
131 TTTACCAAAGTGGGCCCGTTGGCCCATTGGCCCATTAAGCCCAAAAATATCGTTGTGCACGAAAT
*
50687575 TGGACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGTCTCATGAGCGCTC
196 TGGACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGTCTCACGAGCGCTC
50687640 GC
261 GC
*
50687642 AAAAAAATAACCCTAGGGGTAAAATCGTAATTTTGCATGCATAAGGGTATTTCAGTAATTATTAC
1 AAAAAAATAACCCTAGGGGTAAAATCGTAATTTTACATGCATAAGGGTATTTCAGTAATTATTAC
50687707 CTATTGCTAAGGTTTCATGATCATTCTAATGTTTACCAAGCAATCAGGAGTACTTACCTCGTCTT
66 CTATTGCTAAGGTTTCATGATCATTCTAATGTTTACCAAGCAATCAGGAGTACTTACCTCGTCTT
50687772 TTTACCAAAGTGGGCCCGTTGGCCCATTGGCCCATTAAGCCCAAAAATATCGTTGTGCACGAAAT
131 TTTACCAAAGTGGGCCCGTTGGCCCATTGGCCCATTAAGCCCAAAAATATCGTTGTGCACGAAAT
50687837 TGGACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGTCTCACGAGCGCTC
196 TGGACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGTCTCACGAGCGCTC
50687902 G
261 G
50687903 TACGCTCGCG
Statistics
Matches: 257, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
262 257 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (262 bp):
AAAAAAATAACCCTAGGGGTAAAATCGTAATTTTACATGCATAAGGGTATTTCAGTAATTATTAC
CTATTGCTAAGGTTTCATGATCATTCTAATGTTTACCAAGCAATCAGGAGTACTTACCTCGTCTT
TTTACCAAAGTGGGCCCGTTGGCCCATTGGCCCATTAAGCCCAAAAATATCGTTGTGCACGAAAT
TGGACACTCTGCACTCTAATCATCCAAATGCACCATATTCATTAACAACTGTCTCACGAGCGCTC
GC
Found at i:50696406 original size:28 final size:28
Alignment explanation
Indices: 50696343--50696440 Score: 162
Period size: 28 Copynumber: 3.5 Consensus size: 28
50696333 ATATTAAGTC
*
50696343 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
50696370 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
50696398 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
50696426 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
50696441 GTGCAATTTA
Statistics
Matches: 67, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
27 22 0.33
28 45 0.67
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:50700690 original size:37 final size:37
Alignment explanation
Indices: 50700647--50700754 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
50700637 GCTCGGACGT
* *
50700647 AATCTCCACACGAAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
50700684 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
50700721 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
50700755 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.26, C:0.32, G:0.19, T:0.22
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:50700969 original size:47 final size:47
Alignment explanation
Indices: 50700917--50701149 Score: 340
Period size: 47 Copynumber: 5.0 Consensus size: 47
50700907 TTTCACACTA
* * * * * *
50700917 GCCATTCGGCTTTACCGCATATATGCATTTTCATATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
50700964 GCCATTCGGCCTTATCACACATATGCATGCTCACATTCATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* *
50701011 GCCATTCGGCCTTATCACATATATGCATGCTCACATTTATCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
* * *
50701058 GCCATTCGGCGTCATCACATATATGCATGTTCACATTCACCACATTG
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
*
50701105 GCCATTCGGCCTCATCACATATATGCATGTTCACATTCATCACAT
1 GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACAT
50701150 AAAATCCTAA
Statistics
Matches: 169, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 169 1.00
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (47 bp):
GCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCACATTG
Found at i:50701144 original size:25 final size:25
Alignment explanation
Indices: 50701069--50701150 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
50701059 CCATTCGGCG
50701069 TCATCACATATATGCATGTTCACAT
1 TCATCACATATATGCATGTTCACAT
* * * *
50701094 TCACCACAT-T-GGCCA--TTCGGC-C
1 TCATCACATATATG-CATGTTC-ACAT
50701116 TCATCACATATATGCATGTTCACAT
1 TCATCACATATATGCATGTTCACAT
50701141 TCATCACATA
1 TCATCACATA
50701151 AAATCCTAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 14
0.66 0.12 0.22
Matches are distributed among these distances:
22 11 0.26
23 5 0.12
24 5 0.12
25 21 0.50
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.32
Consensus pattern (25 bp):
TCATCACATATATGCATGTTCACAT
Found at i:50733168 original size:12 final size:13
Alignment explanation
Indices: 50733151--50733188 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
50733141 ATCCTGGAGT
50733151 ATTAAG-ACAAGA
1 ATTAAGAACAAGA
*
50733163 ATTAAGAACACATA
1 ATTAAGAACA-AGA
50733177 ATTAAGAACAAG
1 ATTAAGAACAAG
50733189 TCAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
12 6 0.27
13 4 0.18
14 12 0.55
ACGTcount: A:0.58, C:0.11, G:0.13, T:0.18
Consensus pattern (13 bp):
ATTAAGAACAAGA
Found at i:50733564 original size:13 final size:13
Alignment explanation
Indices: 50733546--50733572 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
50733536 GCTCGATAGG
50733546 GACACGCCCGTGT
1 GACACGCCCGTGT
50733559 GACACGCCCGTGT
1 GACACGCCCGTGT
50733572 G
1 G
50733573 CGATTGGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:50746865 original size:64 final size:64
Alignment explanation
Indices: 50746706--50746967 Score: 219
Period size: 68 Copynumber: 4.0 Consensus size: 64
50746696 GATTGGATGA
* ** * ** * *
50746706 TACA-GATAGTATGTAGCTAGGTCACATGTATGGTGCTGGGTGCACATCATGT-GTACAAGAGAG
1 TACAGGATA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAG-ACAAGAGAG
50746769 C
64 C
* *
50746770 TACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAG
1 TAC-AG-GA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAG
50746835 AGC
62 AGC
* * * *
50746838 TACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGA
1 TACAGGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGA
50746903 GC
63 GC
* * * * *
50746905 TACAAGATAAAT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAG
1 TACAGGATATATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAG
50746967 C
64 C
50746968 CGAACTATAT
Statistics
Matches: 162, Mismatches: 26, Indels: 21
0.78 0.12 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 30 0.19
65 3 0.02
66 23 0.14
67 36 0.22
68 49 0.30
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (64 bp):
TACAGGATATATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGC
Found at i:50746902 original size:67 final size:64
Alignment explanation
Indices: 50746760--50746940 Score: 202
Period size: 67 Copynumber: 2.7 Consensus size: 64
50746750 CATCATGTGT
* * * *
50746760 ACAAGAGAGCTACAAGACATTATTATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATG
1 ACAAGAGAGCTAC-AG-GA-TA-TATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATG
50746825 TAG
62 TAG
* *
50746828 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGCGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGGGTGGTACTA--TG-AGGACACCATGT
50746893 AG
63 AG
* * * *
50746895 ACAAGAGAGCTACAAGATAAAT-TGGCTAGGTCACATGGGTGGTACT
1 ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGGGTGGTACT
50746941 GAGTGTTCAC
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
64 26 0.27
65 2 0.02
66 23 0.23
67 34 0.35
68 13 0.13
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (64 bp):
ACAAGAGAGCTACAGGATATATGTAGCTAGGTCGCATGGGTGGTACTATGAGGACACCATGTAG
Found at i:50752610 original size:30 final size:31
Alignment explanation
Indices: 50752576--50752634 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
50752566 ATTTACAAGC
*
50752576 CTAGGGGTAAAATAGTAATTTTGT-AAAAGT
1 CTAGGGGCAAAATAGTAATTTTGTCAAAAGT
* *
50752606 CTAGGGGCAAAATGGTCATTTTGTCAAAA
1 CTAGGGGCAAAATAGTAATTTTGTCAAAA
50752635 TATGAATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.37, C:0.08, G:0.24, T:0.31
Consensus pattern (31 bp):
CTAGGGGCAAAATAGTAATTTTGTCAAAAGT
Found at i:50753023 original size:48 final size:48
Alignment explanation
Indices: 50752965--50753090 Score: 180
Period size: 48 Copynumber: 2.6 Consensus size: 48
50752955 TATGTGTGCT
*
50752965 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCA
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCA
* * ** * *
50753013 AGTGTAAGACCATGTTTGGGACATAGCACCGGCGTTGATATGTGAGCT
1 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCA
*
50753061 AGTGTAAGACCATGTTTGGAACATGGCATC
1 AGTGTAAGACCATGTTTGGGACATGGCATC
50753091 AGCAATTCAC
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 68 1.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCATGTTTGGGACATGGCATCGGCCATGATATGAGAGCA
Found at i:50756216 original size:11 final size:11
Alignment explanation
Indices: 50756200--50756248 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
50756190 TATATGAATT
50756200 TATCATGTGCA
1 TATCATGTGCA
*
50756211 TATCA--TACA
1 TATCATGTGCA
50756220 TATCATGTGCA
1 TATCATGTGCA
50756231 TATCATGT-CA
1 TATCATGTGCA
*
50756241 AATCATGT
1 TATCATGT
50756249 ATATCAAAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 9 0.27
11 16 0.48
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (11 bp):
TATCATGTGCA
Found at i:50772616 original size:40 final size:41
Alignment explanation
Indices: 50772565--50772797 Score: 305
Period size: 40 Copynumber: 5.8 Consensus size: 41
50772555 ATTTGAATTT
* * *
50772565 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
*
50772605 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
* *
50772645 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT-TA
*
50772687 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
*
50772727 TATCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATTA
** * *
50772767 TGCCCAGGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGC
50772798 TTGTGGTAAT
Statistics
Matches: 174, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
39 3 0.02
40 128 0.74
41 6 0.03
42 37 0.21
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (41 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTA
Found at i:50772710 original size:82 final size:81
Alignment explanation
Indices: 50772565--50772797 Score: 326
Period size: 82 Copynumber: 2.9 Consensus size: 81
50772555 ATTTGAATTT
* * * *
50772565 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTATATCCGGGCTAAGACCCGAAGGCA
* *
50772629 TTTGTGCGAGTTGATA
66 ATTGTGCAAGTTGATA
*
50772645 TATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT-TATATCCGGGCTAAGACCCGAAGGC
50772710 AATTGTGCAAGTTGATA
65 AATTGTGCAAGTTGATA
* * ** * *
50772727 TATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTG-CTATGCCCAGGTTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTATATCCGGGCTAAGACCCGAAGGCA
50772791 ATTGTGC
66 ATTGTGC
50772798 TTGTGGTAAT
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
80 59 0.43
81 4 0.03
82 74 0.54
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (81 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATTATATCCGGGCTAAGACCCGAAGGCA
ATTGTGCAAGTTGATA
Found at i:50772782 original size:122 final size:122
Alignment explanation
Indices: 50772565--50772797 Score: 351
Period size: 122 Copynumber: 1.9 Consensus size: 122
50772555 ATTTGAATTT
* * *
50772565 TATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCAT
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
* * * * *
50772630 TTGTGCGAGTTGATATATCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATA
66 TCGTGCGAGTTGATATACCCAGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATA
50772687 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TATATCCGGGCTAAGACCCGAAGGCA
1 TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAG-TGATTATATCCGGGCTAAGACCCGAAGGCA
* * *
50772751 TTCGTGCGAGTTGCTATGCCCAGGTTAAGACCCGAAGGCAATTGTGC
65 TTCGTGCGAGTTGATATACCCAGGCTAAGACCCGAAGGCAATTGTGC
50772798 TTGTGGTAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
122 96 0.97
123 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (122 bp):
TATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTGATTATATCCGGGCTAAGACCCGAAGGCAT
TCGTGCGAGTTGATATACCCAGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATATA
Done.