Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 153 of 186
Found at i:50778034 original size:68 final size:66
Alignment explanation
Indices: 50777961--50778132 Score: 170
Period size: 67 Copynumber: 2.6 Consensus size: 66
50777951 CATCATGTGT
* * * *
50777961 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATGCTA-TG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGAGTGATGCCAGTGAAGGACACCA
50778024 TGTAG
62 TGTAG
** * *
50778029 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGAGTGGTTCCAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGAGTGATGCCA-GTGAAGGACACCATGT
50778094 AG
65 AG
* * * *
50778096 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATG
50778133 GGTGGTACTG
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
64 24 0.27
65 3 0.03
66 17 0.19
67 32 0.36
68 13 0.15
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.22
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGAGTGATGCCAGTGAAGGACACCATGTA
G
Found at i:50778066 original size:64 final size:64
Alignment explanation
Indices: 50777985--50778169 Score: 196
Period size: 67 Copynumber: 2.9 Consensus size: 64
50777975 AGACATTATG
* * * *
50777985 ATGTAGCTAGGTCGCATGGGTGATGCTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * *
50778049 ATGTAGCTAGGTCGCATGAGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
50778114 AA
63 AA
* * *
50778116 AT-TGGCTAGGTCACATGGGTGGTACTGA-GTGTTCACCATGT-GTACAAGAGAGCT
1 ATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGTACACCATGTAG-ACAAGAGAGCT
50778170 GAACTATATG
Statistics
Matches: 100, Mismatches: 16, Indels: 11
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 20 0.20
64 25 0.25
66 21 0.21
67 33 0.33
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:50780285 original size:40 final size:39
Alignment explanation
Indices: 50780233--50780432 Score: 251
Period size: 40 Copynumber: 5.0 Consensus size: 39
50780223 ATTTAACCGA
* * *
50780233 ATATAGCT-ACTCGCTCGAATGCCTTCGGTACATAGCCCGG
1 ATATAG-TAACTCGCACAAATGCCTTCGG-ACTTAGCCCGG
*
50780273 ATATAGTAACTCGCACCAATGCCTTCGAGACTTAGCCCGG
1 ATATAGTAACTCGCACAAATGCCTTCG-GACTTAGCCCGG
*
50780313 ATATAGTAACCCGCACAAATGCCTTCAGGACTTAGCCCGG
1 ATATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGG
50780353 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 ATATAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGG
* * *
50780393 A-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 ATA-TAGTAACTCGCACAAATGCCTTC-GGACTTAGCCCGG
50780433 TTATCATCCA
Statistics
Matches: 146, Mismatches: 10, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 2 0.01
40 142 0.97
41 2 0.01
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (39 bp):
ATATAGTAACTCGCACAAATGCCTTCGGACTTAGCCCGG
Found at i:50788514 original size:40 final size:40
Alignment explanation
Indices: 50788453--50788612 Score: 198
Period size: 40 Copynumber: 4.0 Consensus size: 40
50788443 ATTTAACCGA
* * *
50788453 ATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGCCCGG
1 ATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
50788493 ATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGG
1 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* *
50788533 ATATAGTAACTCGCACAAATGCCTTTGGGACTTAGCTCGG
1 ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
* * * *
50788573 A-ACTAGTCACTAGCGCAAATGCCTTTGGGACTTAGCCCGG
1 ATA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
50788613 TTATCATCCA
Statistics
Matches: 108, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 2 0.02
40 106 0.98
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
ATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
Found at i:50788642 original size:32 final size:32
Alignment explanation
Indices: 50788605--50788670 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
50788595 CTTTGGGACT
50788605 TAGCCCGGTTATCATCCAAATGTTCATGCACA
1 TAGCCCGGTTATCATCCAAATGTTCATGCACA
50788637 TAGCCCGGTTATCATCCAAATGTTCATGCACA
1 TAGCCCGGTTATCATCCAAATGTTCATGCACA
50788669 TA
1 TA
50788671 TCAATAAATC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (32 bp):
TAGCCCGGTTATCATCCAAATGTTCATGCACA
Found at i:50799740 original size:27 final size:27
Alignment explanation
Indices: 50799710--50799764 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
50799700 GACGATTTGA
* *
50799710 AGACGGACTCAATGAAGACATTCAAGT
1 AGACGGAATCAATGAAGACATTAAAGT
* *
50799737 AGACGGAATCAGTGAAGTCATTAAAGT
1 AGACGGAATCAATGAAGACATTAAAGT
50799764 A
1 A
50799765 TTTCTGGGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.42, C:0.15, G:0.24, T:0.20
Consensus pattern (27 bp):
AGACGGAATCAATGAAGACATTAAAGT
Found at i:50801749 original size:40 final size:40
Alignment explanation
Indices: 50801558--50801742 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
50801548 TTGAATGATG
* * * * *
50801558 TCCGGGCTAAGTTCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
50801598 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50801638 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
50801677 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
50801718 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
50801743 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 34 0.27
40 81 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:50801764 original size:79 final size:79
Alignment explanation
Indices: 50801611--50801775 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
50801601 GGACTAAGAT
** **
50801611 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
50801676 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
50801690 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
50801753 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
50801769 CCGAAGG
1 CCGAAGG
50801776 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:50806275 original size:25 final size:25
Alignment explanation
Indices: 50806246--50806293 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
50806236 TTATGATATG
* * *
50806246 AAAATGACCGTTTTTCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
50806271 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
50806294 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:50806396 original size:20 final size:20
Alignment explanation
Indices: 50806330--50806396 Score: 107
Period size: 20 Copynumber: 3.4 Consensus size: 20
50806320 ATTTTGATAA
*
50806330 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
* *
50806350 GCATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
50806370 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
50806390 ACATGAT
1 ACATGAT
50806397 GTATACATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:50806543 original size:24 final size:24
Alignment explanation
Indices: 50806445--50806540 Score: 165
Period size: 24 Copynumber: 4.0 Consensus size: 24
50806435 GGAGGAAGTG
50806445 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
50806469 CAAAAGGGCTTATGCCCCAGCTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
50806493 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
50806517 TAAAAGGGCTTTTGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
50806541 TAACAGAGGC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 68 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:50814691 original size:24 final size:24
Alignment explanation
Indices: 50814664--50814832 Score: 232
Period size: 24 Copynumber: 7.0 Consensus size: 24
50814654 GGAGGAAGTG
50814664 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
*
50814688 CAAAAGGGCTTATGCCCCAGCTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
50814712 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
50814736 TAAAAGGGCTTACGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
50814760 CAAAAGGGCTTATGCCCCAGTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* * * *
50814784 TAAAAGGGTTTTTGCCCCACTTAT
1 CAAAAGGGCTTATGCCCCAGTTAT
* *
50814808 TAAAAGAGGC-TAGGCCTCCAGTTAT
1 CAAAAG-GGCTTATGCC-CCAGTTAT
50814833 ACGATAAAGC
Statistics
Matches: 129, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
24 120 0.93
25 9 0.07
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.26
Consensus pattern (24 bp):
CAAAAGGGCTTATGCCCCAGTTAT
Found at i:50830718 original size:35 final size:37
Alignment explanation
Indices: 50830654--50830729 Score: 138
Period size: 35 Copynumber: 2.1 Consensus size: 37
50830644 TTCATAGAGC
50830654 ACCTTTGTCGATCATTTCAGATAGAGATCTGAGGTTT
1 ACCTTTGTCGATCATTTCAGATAGAGATCTGAGGTTT
50830691 ACCTTTGTCGATCA-TT-AGATAGAGATCTGAGGTTT
1 ACCTTTGTCGATCATTTCAGATAGAGATCTGAGGTTT
50830726 ACCT
1 ACCT
50830730 CGCGGTTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
35 23 0.59
36 2 0.05
37 14 0.36
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (37 bp):
ACCTTTGTCGATCATTTCAGATAGAGATCTGAGGTTT
Found at i:50833572 original size:28 final size:28
Alignment explanation
Indices: 50833537--50833595 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
50833527 GTATAGCATT
50833537 ATACTCATTTTGTGTATATAATCTTATG
1 ATACTCATTTTGTGTATATAATCTTATG
50833565 ATACTCATTTTGTGTATATAATCTTATG
1 ATACTCATTTTGTGTATATAATCTTATG
50833593 ATA
1 ATA
50833596 TGGTTCATGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (28 bp):
ATACTCATTTTGTGTATATAATCTTATG
Found at i:50841231 original size:19 final size:18
Alignment explanation
Indices: 50841197--50841235 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 18
50841187 CCTTTCATTT
50841197 TTCTCACCTCTCTCTCCC
1 TTCTCACCTCTCTCTCCC
*
50841215 TTCTCCCCTCTTCTCTCCC
1 TTCTCACCTC-TCTCTCCC
50841234 TT
1 TT
50841236 GCGCACCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.03, C:0.54, G:0.00, T:0.44
Consensus pattern (18 bp):
TTCTCACCTCTCTCTCCC
Found at i:50842905 original size:14 final size:14
Alignment explanation
Indices: 50842888--50842917 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
50842878 TTTTATTTAG
*
50842888 TATTTTTATGTTTT
1 TATTTTTATCTTTT
50842902 TATTTTTATCTTTT
1 TATTTTTATCTTTT
50842916 TA
1 TA
50842918 AAACTACTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.03, G:0.03, T:0.77
Consensus pattern (14 bp):
TATTTTTATCTTTT
Found at i:50846901 original size:43 final size:43
Alignment explanation
Indices: 50846831--50847043 Score: 265
Period size: 43 Copynumber: 5.0 Consensus size: 43
50846821 ATAAGCTCGA
*
50846831 ACAATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATAT
1 ACAATGCCAATATCCCAGACATGGTCTTACATG-TATCACATAT
* * * * * *
50846874 -CGACGCCACTATCCCAGACATGGTCTTACACGAAATCAAATA-
1 ACAATGCCAATATCCCAGACATGGTCTTACATG-TATCACATAT
*
50846916 ACAATGCCAATGTCCCAGACATGGTCTTACATGTATCCACA-AT
1 ACAATGCCAATATCCCAGACATGGTCTTACATGTAT-CACATAT
*
50846959 ACAATGCCAATATCCCAGACATGATCTTACATGTATTCACA-AT
1 ACAATGCCAATATCCCAGACATGGTCTTACATGTA-TCACATAT
50847002 ACAATGCCAATATCCCAGACATGGTCTTACATGTAATCACAT
1 ACAATGCCAATATCCCAGACATGGTCTTACATGT-ATCACAT
50847044 TTCGGTAACC
Statistics
Matches: 145, Mismatches: 18, Indels: 13
0.82 0.10 0.07
Matches are distributed among these distances:
42 8 0.06
43 135 0.93
44 2 0.01
ACGTcount: A:0.35, C:0.27, G:0.12, T:0.26
Consensus pattern (43 bp):
ACAATGCCAATATCCCAGACATGGTCTTACATGTATCACATAT
Found at i:50848340 original size:22 final size:20
Alignment explanation
Indices: 50848302--50848346 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 20
50848292 TTACCGATCA
*
50848302 ATTTACAACATATAGCATTC
1 ATTTACAACATAAAGCATTC
50848322 ATTTATCAAGCATAAAGCATTC
1 ATTTA-CAA-CATAAAGCATTC
50848344 ATT
1 ATT
50848347 CTCATAAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.23
21 3 0.14
22 14 0.64
ACGTcount: A:0.40, C:0.18, G:0.07, T:0.36
Consensus pattern (20 bp):
ATTTACAACATAAAGCATTC
Found at i:50852749 original size:40 final size:40
Alignment explanation
Indices: 50852699--50852875 Score: 205
Period size: 40 Copynumber: 4.4 Consensus size: 40
50852689 TCAATGTCTC
* * * *
50852699 GCACATTAAGTGCCATACATAGCTGAAGCTATCTCAAATT
1 GCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAATT
*
50852739 GCACACTAAGTGCCATATATA-ATCGAAGCTATGTCGAATCT
1 GCACACTAAGTGCCATATATAGCT-GAAGCTATGTCGAAT-T
* *
50852780 -CACACTAAGTGCCATATATAGCCGAAGCTATGTCGTATT
1 GCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAATT
* * ** * *
50852819 GCACACTAAGTGCCATATACAACCAAAGCTATGTCGTATC
1 GCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAATT
50852859 GCACACTAAGTGCCATA
1 GCACACTAAGTGCCATA
50852876 AATAATTGAT
Statistics
Matches: 121, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
39 2 0.02
40 118 0.98
41 1 0.01
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.25
Consensus pattern (40 bp):
GCACACTAAGTGCCATATATAGCTGAAGCTATGTCGAATT
Found at i:50852848 original size:80 final size:80
Alignment explanation
Indices: 50852697--50852875 Score: 259
Period size: 80 Copynumber: 2.2 Consensus size: 80
50852687 ACTCAATGTC
* * * *
50852697 TCGCACATTAAGTGCCATACATAGCTGAAGCTATCTCAAATTGCACACTAAGTGCCATATATAAT
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATTGCACACTAAGTGCCATATACAAC
*
50852762 CGAAGCTATGTCGAA
66 CAAAGCTATGTCGAA
* * * **
50852777 TCTCACACTAAGTGCCATATATAGCCGAAGCTATGTCGTATTGCACACTAAGTGCCATATACAAC
1 TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATTGCACACTAAGTGCCATATACAAC
*
50852842 CAAAGCTATGTCGTA
66 CAAAGCTATGTCGAA
50852857 TCGCACACTAAGTGCCATA
1 TCGCACACTAAGTGCCATA
50852876 AATAATTGAT
Statistics
Matches: 87, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
80 87 1.00
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.26
Consensus pattern (80 bp):
TCGCACACTAAGTGCCATACATAGCCGAAGCTATCTCAAATTGCACACTAAGTGCCATATACAAC
CAAAGCTATGTCGAA
Found at i:50860817 original size:34 final size:34
Alignment explanation
Indices: 50860769--50860836 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
50860759 AAGAAAAAAG
50860769 AAAAAGAAAAAAGTTATCATGTTTCAACTTGGCC
1 AAAAAGAAAAAAGTTATCATGTTTCAACTTGGCC
* *
50860803 AAAAAGAAATAAGTTCTCATGTTTCAACTTGGCC
1 AAAAAGAAAAAAGTTATCATGTTTCAACTTGGCC
50860837 GAATAGAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (34 bp):
AAAAAGAAAAAAGTTATCATGTTTCAACTTGGCC
Found at i:50862213 original size:40 final size:40
Alignment explanation
Indices: 50862105--50862285 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 40
50862095 TATTCGGATG
* * * *
50862105 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* *
50862145 A-ATTCCGGGCTAAG-CCCAAAGGCAATTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
*
50862184 ATAACCGGGGTAAGTCCCGAAGGCAATTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
* * *
50862224 ATAACCGGGCTAAGTCCTGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTA-CT
* **
50862264 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
50862286 TACTTGGTTT
Statistics
Matches: 120, Mismatches: 17, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 47 0.39
40 73 0.61
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCAATTGTGCGAGTTACT
Found at i:50862282 original size:79 final size:79
Alignment explanation
Indices: 50862105--50862285 Score: 179
Period size: 79 Copynumber: 2.3 Consensus size: 79
50862095 TATTCGGATG
* ** * * *
50862105 ATAACCGAGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCCGGGCTAAGCCCAAAGGCAA
1 ATAACCGGGCTAAACCCCGAAGGCAATTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCAA
*
50862170 TTGTGCGAGTTACT
66 TTGAGCGAGTTACT
* ** * **
50862184 ATAACCGGGGTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTAAGTCCTGAAGGC
1 ATAACCGGGCTAAACCCCGAAGGCAATTGTGCGAGTGACTAAT-ACCGGGCTAAG-CCCAAAGGC
*
50862248 ATTTGAGCGAG-TAGCT
64 AATTGAGCGAGTTA-CT
*
50862264 ATATCC-GGCTAAACCCCGAAGG
1 ATAACCGGGCTAAACCCCGAAGG
50862286 TACTTGGTTT
Statistics
Matches: 85, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
78 2 0.02
79 60 0.71
80 23 0.27
ACGTcount: A:0.28, C:0.23, G:0.27, T:0.22
Consensus pattern (79 bp):
ATAACCGGGCTAAACCCCGAAGGCAATTGTGCGAGTGACTAATACCGGGCTAAGCCCAAAGGCAA
TTGAGCGAGTTACT
Found at i:50870995 original size:40 final size:40
Alignment explanation
Indices: 50870951--50871174 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
50870941 AAGTGAATAT
* * * * **
50870951 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
50870991 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
50871031 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
50871071 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
50871111 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
50871150 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
50871175 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:50871049 original size:80 final size:80
Alignment explanation
Indices: 50870912--50871174 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
50870902 TTGAATGCTG
* * * * *
50870912 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
50870974 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
50870992 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
50871057 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
50871072 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
50871136 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
50871151 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
50871175 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:50871126 original size:120 final size:120
Alignment explanation
Indices: 50870912--50871174 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
50870902 TTGAATGCTG
* * *
50870912 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
50870976 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
50871032 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
50871094 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
50871151 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
50871175 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:50872720 original size:50 final size:50
Alignment explanation
Indices: 50872665--50872764 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
50872655 TGGTGATTTC
50872665 TGACAATTGTAAATGTTTTTATTTATAGTAATGGATCCCGATCGTGACCG
1 TGACAATTGTAAATGTTTTTATTTATAGTAATGGATCCCGATCGTGACCG
50872715 TGACAATTGTAAATGTTTTTATTTATAGTAATGGATCCCGATCGTGACCG
1 TGACAATTGTAAATGTTTTTATTTATAGTAATGGATCCCGATCGTGACCG
50872765 AGAGGTAGCT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.38
Consensus pattern (50 bp):
TGACAATTGTAAATGTTTTTATTTATAGTAATGGATCCCGATCGTGACCG
Found at i:50879119 original size:40 final size:40
Alignment explanation
Indices: 50879047--50879225 Score: 188
Period size: 40 Copynumber: 4.5 Consensus size: 40
50879037 GAATGCTGTT
*
50879047 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTTACT-ATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT-TC
* *
50879087 CGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAATTC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAATTC
* * *
50879127 CGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
* ** *
50879167 CGGGTTAAGTCCCGAAGGCA-TTGTATGAGTTACT-ATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT-TC
*
50879206 CGGGCTATGTCCCGAAGGCA
1 CGGGCTAAGTCCCGAAGGCA
50879226 CTTGAACAAG
Statistics
Matches: 119, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 31 0.26
40 76 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTC
Found at i:50883515 original size:36 final size:36
Alignment explanation
Indices: 50883468--50883540 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
50883458 TACTAAGTCT
*
50883468 AACAAAATTTCGCTCGTAATCAGTAACTGACATGGA
1 AACAAAATTTCGCTCGTAATCAGTAACCGACATGGA
*
50883504 AACAAATTTTCGCTCGTAATCAGTAACCGACATGGA
1 AACAAAATTTCGCTCGTAATCAGTAACCGACATGGA
50883540 A
1 A
50883541 CCTTGCTTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (36 bp):
AACAAAATTTCGCTCGTAATCAGTAACCGACATGGA
Found at i:50890938 original size:56 final size:56
Alignment explanation
Indices: 50890878--50891012 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 56
50890868 CCAAACAGGG
* *
50890878 TCTTACTCGCACACATATATCAAAATCACATATCGATGCCAGCGTATTAAATGTGA
1 TCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACGTATTAAACGTGA
** * * * *
50890934 TCTTACTCGCACACATATATCGGAATCACATATTGATGCTAATGTATTAAACGTGG
1 TCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACGTATTAAACGTGA
* * *
50890990 TATTACTCCCATACATATATCAA
1 TCTTACTCGCACACATATATCAA
50891013 TGCCATGGCC
Statistics
Matches: 66, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
56 66 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (56 bp):
TCTTACTCGCACACATATATCAAAATCACATATCGATGCCAACGTATTAAACGTGA
Found at i:50896525 original size:40 final size:40
Alignment explanation
Indices: 50896469--50896613 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
50896459 CATTTGAATG
*
50896469 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGA-T
* *
50896509 TTATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGAT
* * * *
50896549 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGAT
* * * *
50896589 ATACCCGGGTTAAGACCCAAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCA
50896614 ATTGTGCTTG
Statistics
Matches: 94, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
40 91 0.97
41 3 0.03
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGTTGAT
Found at i:50896632 original size:80 final size:80
Alignment explanation
Indices: 50896469--50896640 Score: 186
Period size: 80 Copynumber: 2.2 Consensus size: 80
50896459 CATTTGAATG
* * * * * * * *
50896469 ATATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCATTTATACGAGTGACTATACCCGGGCTAAGACCCAAAGGCA
* *
50896534 TTTGTGCGAGTTGAT
66 ATTGTGCGAGTGGAT
* *
50896549 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CTATACCCGGGTTAAGACCCAAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTATACGAG-TGACTATACCCGGGCTAAGACCCAAAGGC
** *
50896613 AATTGTGCTTGTGGTT
65 AATTGTGCGAGTGGAT
50896629 ATATCC-GGCTAA
1 ATATCCGGGCTAA
50896641 ATTCTGAAGA
Statistics
Matches: 76, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
79 6 0.08
80 68 0.89
81 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTATACGAGTGACTATACCCGGGCTAAGACCCAAAGGCA
ATTGTGCGAGTGGAT
Found at i:50901889 original size:25 final size:25
Alignment explanation
Indices: 50901861--50901909 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
50901851 CCAGAGGACC
* *
50901861 AATCATATAACTCATGATAATGATT
1 AATCACATAACTCATCATAATGATT
* *
50901886 AATCACATAATTCTTCATAATGAT
1 AATCACATAACTCATCATAATGAT
50901910 AATAATAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.14, G:0.06, T:0.37
Consensus pattern (25 bp):
AATCACATAACTCATCATAATGATT
Found at i:50905685 original size:39 final size:40
Alignment explanation
Indices: 50905609--50905711 Score: 118
Period size: 39 Copynumber: 2.6 Consensus size: 40
50905599 GACAAATCGA
50905609 CTATATATGGCACTTAGTGTGCAATTCGACATAGCTTCAG
1 CTATATATGGCACTTAGTGTGCAATTCGACATAGCTTCAG
* * * * *
50905649 CTATATATGGGA-TTAGTGTGCGATTTGAGATGGCTTCAG
1 CTATATATGGCACTTAGTGTGCAATTCGACATAGCTTCAG
* * * *
50905688 CTATGTACGACACCTAGTGTGCAA
1 CTATATATGGCACTTAGTGTGCAA
50905712 GATATCGAGT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
39 31 0.61
40 20 0.39
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.32
Consensus pattern (40 bp):
CTATATATGGCACTTAGTGTGCAATTCGACATAGCTTCAG
Found at i:50905745 original size:28 final size:28
Alignment explanation
Indices: 50905702--50905778 Score: 100
Period size: 28 Copynumber: 2.8 Consensus size: 28
50905692 GTACGACACC
* *
50905702 TAGTGTGCAAGATATCGAGTCTGGAACT
1 TAGTGTGCGAGATATCGAGTATGGAACT
* *
50905730 TATTGTGCGAGATATCGAGTATGGCACT
1 TAGTGTGCGAGATATCGAGTATGGAACT
* *
50905758 TAGTGTGCGAGGTATTGAGTA
1 TAGTGTGCGAGATATCGAGTA
50905779 ATCAACGACA
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.26, C:0.12, G:0.31, T:0.31
Consensus pattern (28 bp):
TAGTGTGCGAGATATCGAGTATGGAACT
Found at i:50909519 original size:23 final size:23
Alignment explanation
Indices: 50909483--50909567 Score: 88
Period size: 21 Copynumber: 3.9 Consensus size: 23
50909473 TTTATCGATC
* *
50909483 AGGCACTTTATGTGTCGTATTTT
1 AGGCACCTCATGTGTCGTATTTT
* *
50909506 AGGCACCTCGTGTGTCGTA--TC
1 AGGCACCTCATGTGTCGTATTTT
50909527 AGGCACCTCATGTGTCG--TTTT
1 AGGCACCTCATGTGTCGTATTTT
* *
50909548 AGGCACTTTATGTGTCGTAT
1 AGGCACCTCATGTGTCGTAT
50909568 ACTGATCAGG
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
21 33 0.66
23 17 0.34
ACGTcount: A:0.16, C:0.20, G:0.25, T:0.39
Consensus pattern (23 bp):
AGGCACCTCATGTGTCGTATTTT
Found at i:50909543 original size:44 final size:42
Alignment explanation
Indices: 50909480--50909567 Score: 113
Period size: 42 Copynumber: 2.0 Consensus size: 42
50909470 GGCTTTATCG
* * *
50909480 ATCAGGCACTTTATGTGTCGTATTTTAGGCACCTCGTGTGTCGT
1 ATCAGGCACCTCATGTGTCG--TTTTAGGCACCTCATGTGTCGT
* *
50909524 ATCAGGCACCTCATGTGTCGTTTTAGGCACTTTATGTGTCGT
1 ATCAGGCACCTCATGTGTCGTTTTAGGCACCTCATGTGTCGT
50909566 AT
1 AT
50909568 ACTGATCAGG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
42 21 0.54
44 18 0.46
ACGTcount: A:0.17, C:0.20, G:0.24, T:0.39
Consensus pattern (42 bp):
ATCAGGCACCTCATGTGTCGTTTTAGGCACCTCATGTGTCGT
Found at i:50909767 original size:13 final size:13
Alignment explanation
Indices: 50909719--50909756 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
50909709 GAACTATTGG
50909719 ATTGAAA-TGAGAA
1 ATTGAAATTGAG-A
50909732 ATTG-AATTGAGA
1 ATTGAAATTGAGA
50909744 ATTGAAATTGAGA
1 ATTGAAATTGAGA
50909757 TATGAGATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.30
13 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.24, T:0.29
Consensus pattern (13 bp):
ATTGAAATTGAGA
Found at i:50918027 original size:25 final size:26
Alignment explanation
Indices: 50917967--50918037 Score: 101
Period size: 26 Copynumber: 2.8 Consensus size: 26
50917957 AGGAAGTGCA
*
50917967 AAAAGGGCTTTTGCCCCAATTCACCG
1 AAAAGGGCTTTTGCCCCAGTTCACCG
* *
50917993 AAAAGGGCTTTTGCCCCAGTTTATC-
1 AAAAGGGCTTTTGCCCCAGTTCACCG
50918018 AAAAGGGC-TTTGCCCCAGTT
1 AAAAGGGCTTTTGCCCCAGTT
50918038 ATTAAAACAG
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
24 12 0.29
25 8 0.19
26 22 0.52
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTCACCG
Found at i:50918050 original size:24 final size:23
Alignment explanation
Indices: 50917965--50918064 Score: 65
Period size: 24 Copynumber: 4.0 Consensus size: 23
50917955 GGAGGAAGTG
* *
50917965 CAAAAAGGGCTTTTGCCCCAATTCAC
1 CAAAAA-GGC-TTTGCCCCAGTT-AT
*
50917991 CGAAAAGGGCTTTTGCCCCAGTTTAT
1 C-AAAAAGGC-TTTGCCCCAG-TTAT
*
50918017 CAAAAGGGCTTTGCCCCAGTTAT
1 CAAAAAGGCTTTGCCCCAGTTAT
* **
50918040 TAAAACAGGCTAGGCCTCCAGTTAT
1 CAAAA-AGGCTTTGCC-CCAGTTAT
50918065 ATGATAAAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
23 8 0.13
24 17 0.27
25 16 0.25
26 16 0.25
27 6 0.10
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (23 bp):
CAAAAAGGCTTTGCCCCAGTTAT
Found at i:50921295 original size:24 final size:24
Alignment explanation
Indices: 50921268--50921313 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
50921258 TATAGTATGG
* * *
50921268 AAATGACTATTTTTCCCCTAGGTA
1 AAATGACCATTATACCCCTAGGTA
50921292 AAATGACCATTATACCCCTAGG
1 AAATGACCATTATACCCCTAGG
50921314 GTTTAATTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.30
Consensus pattern (24 bp):
AAATGACCATTATACCCCTAGGTA
Found at i:50921475 original size:25 final size:24
Alignment explanation
Indices: 50921423--50921491 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
50921413 GAGGAAGTGC
*
50921423 AAAAGGGCTATGCCCCAGTTACCG
1 AAAAGGGCTTTGCCCCAGTTACCG
*
50921447 AAAAGGGCTTTGCCCTAGTTTACCG
1 AAAAGGGCTTTGCCCCAG-TTACCG
*
50921472 AAAAGGGATTTTGCCCCAGT
1 AAAAGGG-CTTTGCCCCAGT
50921492 AATTAAAAGA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
24 16 0.41
25 14 0.36
26 9 0.23
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTACCG
Found at i:50928218 original size:21 final size:20
Alignment explanation
Indices: 50928190--50928228 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
50928180 CAAAACTTAT
50928190 ATAACTATCATCAAACATTC
1 ATAACTATCATCAAACATTC
*
50928210 ATAATCTATCATTAAACAT
1 ATAA-CTATCATCAAACAT
50928229 CAAAATACTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAACTATCATCAAACATTC
Found at i:50931680 original size:27 final size:27
Alignment explanation
Indices: 50931641--50931742 Score: 111
Period size: 27 Copynumber: 3.8 Consensus size: 27
50931631 GGAGCATTCA
50931641 GTGGCTCTGCCACAAATATCTGATCTG
1 GTGGCTCTGCCACAAATATCTGATCTG
* *
50931668 GTGGCTCTACCACAAATATCTATATCTG
1 GTGGCTCTGCCACAAATATCT-GATCTG
* *
50931696 GTGGCTCTGCAAC-AATATCTGTATC-A
1 GTGGCTCTGCCACAAATATCTG-ATCTG
* *
50931722 GTGACTCTGTCAC-AATATCTG
1 GTGGCTCTGCCACAAATATCTG
50931743 TTTTGGCAGC
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 18 0.28
27 30 0.47
28 16 0.25
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (27 bp):
GTGGCTCTGCCACAAATATCTGATCTG
Found at i:50935448 original size:27 final size:26
Alignment explanation
Indices: 50935418--50935481 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 26
50935408 ATTTACTAAA
*
50935418 ATACCCCTAAGTATAAAAATTACCATT
1 ATACCCCTAAGT-GAAAAATTACCATT
* *
50935445 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAAGTGAAAAATTACCATT
*
50935471 ATACCTCTAAG
1 ATACCCCTAAG
50935482 GTTAATTTTG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 21 0.66
27 11 0.34
ACGTcount: A:0.39, C:0.25, G:0.08, T:0.28
Consensus pattern (26 bp):
ATACCCCTAAGTGAAAAATTACCATT
Found at i:50935623 original size:27 final size:26
Alignment explanation
Indices: 50935585--50935690 Score: 122
Period size: 27 Copynumber: 3.9 Consensus size: 26
50935575 GAGGAAGCGT
50935585 TCTGGTGGCTCTGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCAC-AATATCTGA
* *
50935612 TCTGGTGGCTCTACCACAAATATCTATA
1 TCTGGTGGCTCTGCCAC-AATATCT-GA
* *
50935640 TCTGGTGGCTGTGTCACAATATCTGTA
1 TCTGGTGGCTCTGCCACAATATCTG-A
* *
50935667 TCTGGTGACTCTGTCACAATATCT
1 TCTGGTGGCTCTGCCACAATATCT
50935691 ATTCTGGCAG
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
27 54 0.78
28 15 0.22
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (26 bp):
TCTGGTGGCTCTGCCACAATATCTGA
Found at i:50935670 original size:55 final size:53
Alignment explanation
Indices: 50935584--50935697 Score: 149
Period size: 55 Copynumber: 2.1 Consensus size: 53
50935574 GGAGGAAGCG
*
50935584 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGGCTCTACCACAAATATCTA
1 TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTACCAC-AATATCTA
* * **
50935638 TATCTGGTGGCTGTGTCAC-AATATCTGTATCTGGTGACTCTGTCACAATATCTA
1 T-TCTGGTGGCTCTGCCACAAATATCTG-ATCTGGTGACTCTACCACAATATCTA
50935692 TTCTGG
1 TTCTGG
50935698 CAGCCATACT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
53 5 0.09
54 18 0.34
55 30 0.57
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (53 bp):
TTCTGGTGGCTCTGCCACAAATATCTGATCTGGTGACTCTACCACAATATCTA
Found at i:50937399 original size:54 final size:55
Alignment explanation
Indices: 50937324--50937540 Score: 246
Period size: 54 Copynumber: 4.0 Consensus size: 55
50937314 TTAGAATACT
* *
50937324 TTGGTTTACAAAAATATCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCC
1 TTGGTTTACAAAATTACCAAAATACCCCTAGATTTGTAAAATTACCAAAATACCC
*
50937378 TTGGTTTACAAAATTACCAAAATACCCCTA-ATTTGTAAAATTACCAAAATACCT
1 TTGGTTTACAAAATTACCAAAATACCCCTAGATTTGTAAAATTACCAAAATACCC
** * * *
50937432 TTGGTTTGTAAAATTACCAAAATACTCCT-GATTTGTTAAATTACCGAAATACCC
1 TTGGTTTACAAAATTACCAAAATACCCCTAGATTTGTAAAATTACCAAAATACCC
** *** * **
50937486 TCAGTTTGA-AAAATTATTGAAATA-CCCTCGATTTGTAAAATTACTGAAATACCC
1 TTGGTTT-ACAAAATTACCAAAATACCCCTAGATTTGTAAAATTACCAAAATACCC
50937540 T
1 T
50937541 CGACTTGTGA
Statistics
Matches: 141, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
53 3 0.02
54 138 0.98
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.33
Consensus pattern (55 bp):
TTGGTTTACAAAATTACCAAAATACCCCTAGATTTGTAAAATTACCAAAATACCC
Found at i:50937540 original size:27 final size:27
Alignment explanation
Indices: 50937341--50937586 Score: 212
Period size: 27 Copynumber: 9.1 Consensus size: 27
50937331 ACAAAAATAT
*
50937341 CAAAATACCC-CTAGTTTGTAAAATTAC
1 CAAAATACCCTCGA-TTTGTAAAATTAC
* * **
50937368 CAAAATACCCTTGGTTTACAAAATTAC
1 CAAAATACCCTCGATTTGTAAAATTAC
*
50937395 CAAAATACCC-CTAATTTGTAAAATTAC
1 CAAAATACCCTC-GATTTGTAAAATTAC
* * *
50937422 CAAAATACCTTTGGTTTGTAAAATTAC
1 CAAAATACCCTCGATTTGTAAAATTAC
*
50937449 CAAAATACTCCT-GATTTGTTAAATTAC
1 CAAAATAC-CCTCGATTTGTAAAATTAC
* * *
50937476 CGAAATACCCTC-AGTTTGAAAAATTAT
1 CAAAATACCCTCGA-TTTGTAAAATTAC
**
50937503 TGAAATACCCTCGATTTGTAAAATTAC
1 CAAAATACCCTCGATTTGTAAAATTAC
** * *
50937530 TGAAATACCCTCGACTTGTGAAAATTGC
1 CAAAATACCCTCGATTTGT-AAAATTAC
* * * *
50937558 CAAAGTACCCCCGATTTATAGAATTAC
1 CAAAATACCCTCGATTTGTAAAATTAC
50937585 CA
1 CA
50937587 TTTTACCATC
Statistics
Matches: 177, Mismatches: 34, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.02
27 150 0.85
28 23 0.13
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (27 bp):
CAAAATACCCTCGATTTGTAAAATTAC
Found at i:50937636 original size:27 final size:27
Alignment explanation
Indices: 50937606--50937854 Score: 311
Period size: 27 Copynumber: 9.2 Consensus size: 27
50937596 CGATTTACAA
* *
50937606 AATTATTGAAATGCCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
50937633 AATTA-TCGAAATACCCCTATAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
50937660 AATTACCGAAATACCCCTGTAGTGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
50937687 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
50937714 AATTACTGAAATACCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
50937741 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
50937768 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
50937795 AAATACTAAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
50937822 AAATACTGAGATACCCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
50937849 AATTAC
1 AATTAC
50937855 CATTTTGCCC
Statistics
Matches: 191, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
26 1 0.01
27 190 0.99
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:50938530 original size:2 final size:2
Alignment explanation
Indices: 50938523--50938548 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
50938513 GTGGCTTCGC
50938523 CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA
50938549 TATATATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:50938596 original size:27 final size:26
Alignment explanation
Indices: 50938558--50938617 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
50938548 ATATATATAT
* *
50938558 ATATTTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGACCTAGCCACA
* * *
50938584 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGT-TCTGGTGACCTAGCCACA
50938611 ATATCTG
1 ATATCTG
50938618 GCAGCCTCGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (26 bp):
ATATCTGTTCTGGTGACCTAGCCACA
Found at i:50940403 original size:48 final size:48
Alignment explanation
Indices: 50940332--50940493 Score: 288
Period size: 48 Copynumber: 3.4 Consensus size: 48
50940322 GCACCTATAC
50940332 CATGGCCCGAAGCCAAATCAAGGTAGCTTATATCCGAAATACTGATAT
1 CATGGCCCGAAGCCAAATCAAGGTAGCTTATATCCGAAATACTGATAT
*
50940380 CATGGCTCGAAGCCAAATCAAGGTAGCTTATATCCGAAATACTGATAT
1 CATGGCCCGAAGCCAAATCAAGGTAGCTTATATCCGAAATACTGATAT
* * *
50940428 CATGGCTCGAAGCCAAATCAAGGTAGCTTATATCCGAAGTAATGATAT
1 CATGGCCCGAAGCCAAATCAAGGTAGCTTATATCCGAAATACTGATAT
50940476 CATGGCCCGAAGCCAAAT
1 CATGGCCCGAAGCCAAAT
50940494 TAGCAACTCG
Statistics
Matches: 110, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 110 1.00
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (48 bp):
CATGGCCCGAAGCCAAATCAAGGTAGCTTATATCCGAAATACTGATAT
Found at i:50946175 original size:40 final size:40
Alignment explanation
Indices: 50946116--50946543 Score: 712
Period size: 40 Copynumber: 10.7 Consensus size: 40
50946106 GAGCATTGGA
*
50946116 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50946156 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50946196 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
50946236 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
50946276 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
50946316 ATATATCCGGGCTAAGACCCGAAAGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* * *
50946356 ATATGTCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
50946396 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
50946436 ATATATCCGGGCTAAAACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50946476 ATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
50946516 ATATGTCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
50946544 ATGTGTTTGC
Statistics
Matches: 371, Mismatches: 17, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 371 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.21
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:50954307 original size:40 final size:40
Alignment explanation
Indices: 50954277--50954526 Score: 385
Period size: 40 Copynumber: 6.3 Consensus size: 40
50954267 GGACTAAGAT
* * * *
50954277 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
50954317 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
50954357 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
*
50954397 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
50954437 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
50954477 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
50954516 CCGAAGGCATT
1 CCGAAGGCATT
50954527 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 11, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
39 34 0.17
40 165 0.83
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:50954361 original size:80 final size:80
Alignment explanation
Indices: 50954224--50954526 Score: 387
Period size: 80 Copynumber: 3.8 Consensus size: 80
50954214 TTGAATGCTG
* * * * * * * *
50954224 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGCTAAG-TCCCGAAGGCAT
* * *
50954287 TTGTGCGAGATACTAAA
64 TCGTGCGAGTTATTAAA
*
50954304 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATTC
50954369 GTGCGAGTTATTAAA
66 GTGCGAGTTATTAAA
* *
50954384 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATTC
*
50954449 GTGCGAGTTGTTAAA
66 GTGCGAGTTATTAAA
* * * * *
50954464 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATT
50954527 TGAACGAGGA
Statistics
Matches: 200, Mismatches: 21, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
79 34 0.17
80 160 0.80
81 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGCTAAGTCCCGAAGGCATTC
GTGCGAGTTATTAAA
Found at i:50954437 original size:120 final size:119
Alignment explanation
Indices: 50954224--50954526 Score: 401
Period size: 120 Copynumber: 2.5 Consensus size: 119
50954214 TTGAATGCTG
* * * * * * *
50954224 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
*
50954288 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
64 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
50954344 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* ** *
50954409 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * * *
50954464 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
50954527 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 20, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
119 35 0.22
120 122 0.76
121 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:50958247 original size:92 final size:92
Alignment explanation
Indices: 50958142--50958324 Score: 348
Period size: 92 Copynumber: 2.0 Consensus size: 92
50958132 CTTGTGAATT
50958142 CCAATTCAAAGTAATACATAAAGTTTGGGGAAACAGCCTAAGATTTTAAATTCTTAAAAATCAAC
1 CCAATTCAAAGTAATACATAAAGTTTGGGGAAACAGCCTAAGATTTTAAATTCTTAAAAATCAAC
50958207 TTATCATGCTTGATTCTCCAATGTCTC
66 TTATCATGCTTGATTCTCCAATGTCTC
*
50958234 CCAATTCAAAGTAATACCTAAAGTTTGGGGAAACAGCCTAAGATTTTAAATTCTTAAAAATCAAC
1 CCAATTCAAAGTAATACATAAAGTTTGGGGAAACAGCCTAAGATTTTAAATTCTTAAAAATCAAC
*
50958299 TTATCATGCTTGATTCTCTAATGTCT
66 TTATCATGCTTGATTCTCCAATGTCT
50958325 TAAAGTTTAA
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 89 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (92 bp):
CCAATTCAAAGTAATACATAAAGTTTGGGGAAACAGCCTAAGATTTTAAATTCTTAAAAATCAAC
TTATCATGCTTGATTCTCCAATGTCTC
Found at i:50970244 original size:25 final size:25
Alignment explanation
Indices: 50970216--50970267 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
50970206 AAGGAAAAAA
50970216 TCAAGCTAAAATCAGCTCATTTTCT
1 TCAAGCTAAAATCAGCTCATTTTCT
50970241 TCAAGCTAAAATCAGCTCATTTTCT
1 TCAAGCTAAAATCAGCTCATTTTCT
50970266 TC
1 TC
50970268 TCCATGCTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.37
Consensus pattern (25 bp):
TCAAGCTAAAATCAGCTCATTTTCT
Found at i:50979899 original size:27 final size:27
Alignment explanation
Indices: 50979868--50980045 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50979858 TAAATTGTAC
50979868 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50979895 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50979921 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50979949 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50979977 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50980004 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50980031 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50980046 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50979982 original size:82 final size:81
Alignment explanation
Indices: 50979869--50980024 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50979859 AAATTGTACA
* *
50979869 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50979933 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50979950 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50980015 TGCGAGTTGA
65 TGCGAATTGA
50980025 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50980036 original size:82 final size:81
Alignment explanation
Indices: 50979865--50980045 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50979855 GATTAAATTG
* *
50979865 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50979930 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50979946 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50980010 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50980028 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50980046 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50983685 original size:51 final size:53
Alignment explanation
Indices: 50983608--50983738 Score: 187
Period size: 52 Copynumber: 2.5 Consensus size: 53
50983598 CGGATACCCG
* * * *
50983608 GTGGCCTGCACATAGTACCACCCTTGTAG-TCAAAGCTA-CCTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAGACCAAAGCTATACTTCTTCACAAA
*
50983659 GTGGCCTTCACATAGTACCACACTTGT-GACCAAAGCTATATTTCTTCACAAA
1 GTGGCCTTCACATAGTACCACACTTGTAGACCAAAGCTATACTTCTTCACAAA
*
50983711 GTGCCCTTCACATAGTACCACACTTGTA
1 GTGGCCTTCACATAGTACCACACTTGTA
50983739 ACATCCCGAT
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
50 1 0.01
51 33 0.46
52 37 0.52
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (53 bp):
GTGGCCTTCACATAGTACCACACTTGTAGACCAAAGCTATACTTCTTCACAAA
Found at i:50986761 original size:27 final size:27
Alignment explanation
Indices: 50986730--50986907 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
50986720 TAAATTGTAC
50986730 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
50986757 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50986783 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
50986811 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
50986839 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
50986866 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
50986893 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50986908 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:50986844 original size:82 final size:81
Alignment explanation
Indices: 50986731--50986886 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
50986721 AAATTGTACA
* *
50986731 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
50986795 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
50986812 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
50986877 TGCGAGTTGA
65 TGCGAATTGA
50986887 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:50986898 original size:82 final size:81
Alignment explanation
Indices: 50986727--50986907 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
50986717 GATTAAATTG
* *
50986727 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
50986792 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
50986808 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
50986872 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
50986890 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
50986908 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:50988583 original size:47 final size:48
Alignment explanation
Indices: 50988453--50988591 Score: 181
Period size: 48 Copynumber: 2.9 Consensus size: 48
50988443 TACCACAGTT
* * **
50988453 ATACATGTAATGTAGTGCTAAGTGGATATACCACAATTACACATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* ** *
50988501 ATACATGTAACGTGGTGGTAAGTGGATATGTCACGGTTACATATATTG
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
* *
50988549 ATTCAT-TAACGTGGTGCTAAGTGGATATACCACGGTTAAACAT
1 ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACAT
50988592 GTCACGTGGT
Statistics
Matches: 77, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
47 32 0.42
48 45 0.58
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (48 bp):
ATACATGTAACGTGGTGCTAAGTGGATATACCACGGTTACACATATTG
Found at i:50988608 original size:38 final size:38
Alignment explanation
Indices: 50988557--50988631 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 38
50988547 TGATTCATTA
50988557 ACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTC
1 ACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTC
* *
50988595 ACGTGGTGCTAAGTGGATATGCCACGGTTATACATGT
1 ACGTGGTGCTAAGTGGATATACCACGGTTAAACATGT
50988632 TAATTTGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (38 bp):
ACGTGGTGCTAAGTGGATATACCACGGTTAAACATGTC
Found at i:50989473 original size:10 final size:10
Alignment explanation
Indices: 50989458--50989489 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
50989448 TTTAATATTA
50989458 AATTATTTTT
1 AATTATTTTT
50989468 AATTATTTTT
1 AATTATTTTT
50989478 --TTATTTTT
1 AATTATTTTT
50989486 AATT
1 AATT
50989490 TTTAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
8 8 0.40
10 12 0.60
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
AATTATTTTT
Found at i:50989667 original size:14 final size:15
Alignment explanation
Indices: 50989648--50989686 Score: 62
Period size: 14 Copynumber: 2.6 Consensus size: 15
50989638 CAACTCAATA
50989648 GCTTCTTCATTT-TT
1 GCTTCTTCATTTGTT
50989662 GCTTCTTCATTTGTT
1 GCTTCTTCATTTGTT
50989677 GTCTTCTTCA
1 G-CTTCTTCA
50989687 CAATAAGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
14 12 0.52
15 3 0.13
16 8 0.35
ACGTcount: A:0.08, C:0.23, G:0.10, T:0.59
Consensus pattern (15 bp):
GCTTCTTCATTTGTT
Found at i:50990933 original size:38 final size:38
Alignment explanation
Indices: 50990877--50990999 Score: 183
Period size: 38 Copynumber: 3.2 Consensus size: 38
50990867 GGCTCAAAGG
* * *
50990877 CCCGAATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
* * *
50990915 CCCAGATATATTACCAGCACGAAGCCTGTGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
*
50990953 CCTGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
1 CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
50990991 CCCGGATAT
1 CCCGGATAT
50991000 CATATTTCGA
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 74 1.00
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (38 bp):
CCCGGATATAATACCAGCACGAAGCCTGCGGGATTTAA
Found at i:50996751 original size:11 final size:11
Alignment explanation
Indices: 50996722--50996783 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
50996712 TGTTCGGTGT
* *
50996722 TGTTTTGATGT
1 TGTTTTGCTGC
50996733 TGTTTTGCTGC
1 TGTTTTGCTGC
*
50996744 TGTTTTGCCGC
1 TGTTTTGCTGC
* *
50996755 TATTTTAG-TGT
1 TGTTTT-GCTGC
50996766 TGTTTTGCTGC
1 TGTTTTGCTGC
50996777 TGCTTTT
1 TG-TTTT
50996784 TGTTGTGTTT
Statistics
Matches: 40, Mismatches: 8, Indels: 5
0.75 0.15 0.09
Matches are distributed among these distances:
10 1 0.03
11 34 0.85
12 5 0.12
ACGTcount: A:0.05, C:0.13, G:0.24, T:0.58
Consensus pattern (11 bp):
TGTTTTGCTGC
Found at i:50998064 original size:14 final size:14
Alignment explanation
Indices: 50998042--50998077 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
50998032 TTGAAATTGA
50998042 CCACACGGCCCAAT
1 CCACACGGCCCAAT
* *
50998056 CCACGCGGCCCGAT
1 CCACACGGCCCAAT
50998070 CCACACGG
1 CCACACGG
50998078 GCGTGTGACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.22, C:0.50, G:0.22, T:0.06
Consensus pattern (14 bp):
CCACACGGCCCAAT
Found at i:51013884 original size:40 final size:40
Alignment explanation
Indices: 51013779--51013924 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 40
51013769 GCTACTCGTT
*
51013779 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
51013819 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
51013859 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
51013900 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
51013925 CATCATTCGA
Statistics
Matches: 93, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
39 3 0.03
40 77 0.83
41 13 0.14
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:51015606 original size:38 final size:38
Alignment explanation
Indices: 51015555--51015706 Score: 187
Period size: 38 Copynumber: 3.8 Consensus size: 38
51015545 GGCTGTCACA
51015555 CTAAGTGGATATGCCACGGTTAAACATGTAACGTGGTG
1 CTAAGTGGATATGCCACGGTTAAACATGTAACGTGGTG
* *
51015593 CTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTG
1 CTAAGTGGATATGCCACGGTTA-A-ACA-TG------TAACGTGGTG
*
51015640 CTAAGTGGATATACCACGGTTAAACATGTAACGTGGTG
1 CTAAGTGGATATGCCACGGTTAAACATGTAACGTGGTG
*
51015678 CTAAGTGGATATGCCACGGTTATACATGT
1 CTAAGTGGATATGCCACGGTTAAACATGT
51015707 TAATTTGAAA
Statistics
Matches: 98, Mismatches: 7, Indels: 18
0.80 0.06 0.15
Matches are distributed among these distances:
38 58 0.59
39 1 0.01
40 2 0.02
41 2 0.02
44 2 0.02
45 2 0.02
46 1 0.01
47 30 0.31
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (38 bp):
CTAAGTGGATATGCCACGGTTAAACATGTAACGTGGTG
Found at i:51018785 original size:49 final size:49
Alignment explanation
Indices: 51018740--51019108 Score: 429
Period size: 49 Copynumber: 7.4 Consensus size: 49
51018730 TTAGTACGCA
*
51018740 TAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATTC-AGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTA-TCGAGTACACG
** * *
51018789 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCGAGTACACG
* * * * *
51018839 TAGTAGCCTGCACTTAGTATTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGAGTACACG
* *
51018890 TAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCG-GTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTAT-CGAGTACACG
** * *
51018939 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACC-AATTATCGAGTACACG
* * * * *
51018989 TAGTAGCCTGCACTTAGTATTACACACGTGATCAAAGTTATCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACACGTGA-CCAA-TTATCGAGTACACG
* *
51019040 TAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCG-GTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTAT-CGAGTACACG
51019089 TAGTAGCCTGCACTTAGTAC
1 TAGTAGCCTGCACTTAGTAC
51019109 AAAAATGTGA
Statistics
Matches: 269, Mismatches: 41, Indels: 20
0.82 0.12 0.06
Matches are distributed among these distances:
49 103 0.38
50 94 0.35
51 72 0.27
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCAATTATCGAGTACACG
Found at i:51018965 original size:150 final size:150
Alignment explanation
Indices: 51018733--51019108 Score: 725
Period size: 150 Copynumber: 2.5 Consensus size: 150
51018723 AGGTTATTTA
* * *
51018733 GTACGCATAGTAGCCTGCACTTAGTACTACACATGTGACCAATTATTCAGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCT
51018798 GCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTATTACA
66 GCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTATTACA
51018863 CACGTGATCAAAGTTATCGG
131 CACGTGATCAAAGTTATCGG
51018883 GTACGCATAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCT
51018948 GCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTATTACA
66 GCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTATTACA
51019013 CACGTGATCAAAGTTATCGG
131 CACGTGATCAAAGTTATCGG
51019033 GTACGCATAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCT
1 GTACGCATAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCT
51019098 GCACTTAGTAC
66 GCACTTAGTAC
51019109 AAAAATGTGA
Statistics
Matches: 223, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 223 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (150 bp):
GTACGCATAGTAGCCTACACTTAGTACTACACATGTGACCAATTATCCGGTACACGTAGTAGCCT
GCACTTAGTACTACACACGTGACCTAACCATCTAATACACGTAGTAGCCTGCACTTAGTATTACA
CACGTGATCAAAGTTATCGG
Found at i:51019397 original size:27 final size:27
Alignment explanation
Indices: 51019367--51019420 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
51019357 TCATACAACC
* *
51019367 CATGTAATAGTAATTTAACATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
**
51019394 CATGTAACAATAATTTGCCATTCAATT
1 CATGTAACAATAATTTAACATTCAATT
51019421 TCACATGACA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (27 bp):
CATGTAACAATAATTTAACATTCAATT
Found at i:51019731 original size:30 final size:30
Alignment explanation
Indices: 51019697--51019755 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
51019687 CCAAAATCAT
51019697 ATTTTGGT-AAAATTACAATTTTGCCCCTAA
1 ATTTT-GTCAAAATTACAATTTTGCCCCTAA
*
51019727 ATTTTGTCAAAATTACATTTTTGCCCCTA
1 ATTTTGTCAAAATTACAATTTTGCCCCTA
51019756 GGCTCGTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 2 0.07
30 25 0.93
ACGTcount: A:0.31, C:0.19, G:0.08, T:0.42
Consensus pattern (30 bp):
ATTTTGTCAAAATTACAATTTTGCCCCTAA
Found at i:51024823 original size:170 final size:170
Alignment explanation
Indices: 51024520--51024859 Score: 581
Period size: 170 Copynumber: 2.0 Consensus size: 170
51024510 GTGGTCTGCC
* *
51024520 TAGGCCTATTTTGAAATGGCCCTCAAGCAACACAGCTGAGACACACGCCCATATCTTTGACCGTG
1 TAGGCCCATTTCGAAATGGCCCTCAAGCAACACAGCTGAGACACACGCCCATATCTTTGACCGTG
*
51024585 TGGGTAAAAGTAGGCCATTTACAAGGCCAAATTGCCACCCATTAAGGGTCCTCCCTACAAGAAAC
66 TGGGTAAAAATAGGCCATTTACAAGGCCAAATTGCCACCCATTAAGGGTCCTCCCTACAAGAAAC
51024650 AAATAAGCTTCAAATGCATACCAAATGTTCAACCATTTCA
131 AAATAAGCTTCAAATGCATACCAAATGTTCAACCATTTCA
* * **
51024690 TAGGCCCATTTCGAAATGGCCCTCAAGCAACATAGCTGAGACACACGCCCATGTCTTTTCCCGTG
1 TAGGCCCATTTCGAAATGGCCCTCAAGCAACACAGCTGAGACACACGCCCATATCTTTGACCGTG
* * *
51024755 TGGGTAAAAATAGGCCATTTACAAGGCCAAATTTCCACCCATTAAGGGTCCTCCCTACAGGCAAC
66 TGGGTAAAAATAGGCCATTTACAAGGCCAAATTGCCACCCATTAAGGGTCCTCCCTACAAGAAAC
*
51024820 AAATAAGCTTCAAATGCGTACCAAATGTTCAACCATTTCA
131 AAATAAGCTTCAAATGCATACCAAATGTTCAACCATTTCA
51024860 CAACCAATAC
Statistics
Matches: 159, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
170 159 1.00
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.23
Consensus pattern (170 bp):
TAGGCCCATTTCGAAATGGCCCTCAAGCAACACAGCTGAGACACACGCCCATATCTTTGACCGTG
TGGGTAAAAATAGGCCATTTACAAGGCCAAATTGCCACCCATTAAGGGTCCTCCCTACAAGAAAC
AAATAAGCTTCAAATGCATACCAAATGTTCAACCATTTCA
Found at i:51026787 original size:21 final size:22
Alignment explanation
Indices: 51026754--51026794 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
51026744 TTAATTTATG
*
51026754 TTTCATTGGCACATA-ATCATA
1 TTTCATTGCCACATACATCATA
*
51026775 TTTCATTTCCACATACATCA
1 TTTCATTGCCACATACATCA
51026795 CAATACACTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.32, C:0.24, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTCATTGCCACATACATCATA
Found at i:51028764 original size:43 final size:44
Alignment explanation
Indices: 51028654--51028765 Score: 124
Period size: 43 Copynumber: 2.6 Consensus size: 44
51028644 ATGCCAACGC
* *
51028654 CCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCATTGT
1 CCCAGACATGGTCTTACATGTAAATCAAATATAGATGCCATTGT
* * * *
51028697 CCTAGACAAGGTCTTACACG-AAATCAAATA-AGATGTCGA-TGT
1 CCCAGACATGGTCTTACATGTAAATCAAATATAGATG-CCATTGT
*
51028739 CCCAGACATGGGCTTACATGTAAATCA
1 CCCAGACATGGTCTTACATGTAAATCA
51028766 TAAGTCAATG
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 23 0.41
43 33 0.59
ACGTcount: A:0.33, C:0.22, G:0.19, T:0.26
Consensus pattern (44 bp):
CCCAGACATGGTCTTACATGTAAATCAAATATAGATGCCATTGT
Found at i:51036791 original size:11 final size:11
Alignment explanation
Indices: 51036777--51036805 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
51036767 CAAATTACTC
51036777 AAATTCATCAA
1 AAATTCATCAA
51036788 AAATTCATCAA
1 AAATTCATCAA
51036799 AAATTCA
1 AAATTCA
51036806 AAGACAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (11 bp):
AAATTCATCAA
Found at i:51040961 original size:23 final size:25
Alignment explanation
Indices: 51040935--51040981 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
51040925 TATCATTCAT
*
51040935 TTCATTATAT-CA-ATATTTTATGC
1 TTCATCATATCCATATATTTTATGC
*
51040958 TTCATCATTTCCATATATTTTATG
1 TTCATCATATCCATATATTTTATG
51040982 TATATTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 8 0.40
24 2 0.10
25 10 0.50
ACGTcount: A:0.28, C:0.15, G:0.04, T:0.53
Consensus pattern (25 bp):
TTCATCATATCCATATATTTTATGC
Found at i:51041302 original size:46 final size:46
Alignment explanation
Indices: 51041242--51041507 Score: 309
Period size: 46 Copynumber: 6.0 Consensus size: 46
51041232 TTTGACGTGA
* * * * *
51041242 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACTATGGTCTTACACA-TTTCATATCAGGT
** * * *
51041288 TGCCATGGTATCTTTCAACTATGGTCTTATTCTTTTCATGTCATGT
1 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
* *
51041334 TGCCATGGTATCTTTTAA-TCATGGTCTTACACATCTCATATCAGGT
1 TGCCATGGTATCTTTCAACT-ATGGTCTTACACATTTCATATCAGGT
*
51041380 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
*
51041426 TGCCATGGTATCTTTCAACCATGGTCTT--ACA---C--A-CAGGT
1 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
*
51041464 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAG
51041508 AGAGCACACT
Statistics
Matches: 195, Mismatches: 14, Indels: 22
0.84 0.06 0.10
Matches are distributed among these distances:
38 33 0.17
39 1 0.01
40 3 0.02
41 1 0.01
43 1 0.01
44 3 0.02
45 6 0.03
46 147 0.75
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACTATGGTCTTACACATTTCATATCAGGT
Found at i:51041472 original size:38 final size:38
Alignment explanation
Indices: 51041421--51041496 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
51041411 CATTTCATAT
51041421 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
51041459 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
1 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
51041497 TTTCATATCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (38 bp):
CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACA
Found at i:51044695 original size:134 final size:134
Alignment explanation
Indices: 51044513--51044775 Score: 463
Period size: 134 Copynumber: 2.0 Consensus size: 134
51044503 TTCCTTTGGT
* * * *
51044513 TCAACCAGGATTTCGAATGTCGAATTCCTATCGAGTCAATGTCGAACTTATTCGAAGTCTTGTAT
1 TCAACCAGGATTTCGAATGCCGAATTCCTATAGAGTCAATGTCAAACTTATCCGAAGTCTTGTAT
51044578 TCACAACTTATACAGTATCAAAGCATTTAAAATTCATTTATAATGAAATTTATCACATACGAACA
66 TCACAACTTATACAGTATCAAAGCATTTAAAATTCATTTATAATGAAATTTATCACATACGAACA
51044643 TACA
131 TACA
* *
51044647 TCAACCGGGATTTCGAATGCCGAATTCCTATAGAGTTAATGTCAAACTTATCCGAAGTCTTGTAT
1 TCAACCAGGATTTCGAATGCCGAATTCCTATAGAGTCAATGTCAAACTTATCCGAAGTCTTGTAT
*
51044712 TCACAACTTATACAGTATCAAAGCATTTAAAATTCATTTATAATGAAATTTATCATATACGAAC
66 TCACAACTTATACAGTATCAAAGCATTTAAAATTCATTTATAATGAAATTTATCACATACGAAC
51044776 TTACTTCGGG
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
134 122 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (134 bp):
TCAACCAGGATTTCGAATGCCGAATTCCTATAGAGTCAATGTCAAACTTATCCGAAGTCTTGTAT
TCACAACTTATACAGTATCAAAGCATTTAAAATTCATTTATAATGAAATTTATCACATACGAACA
TACA
Found at i:51049712 original size:27 final size:27
Alignment explanation
Indices: 51049681--51049858 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51049671 TAAATTGTAC
51049681 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
51049708 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51049734 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
51049762 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
51049790 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
51049817 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
51049844 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
51049859 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:51049795 original size:82 final size:81
Alignment explanation
Indices: 51049682--51049837 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51049672 AAATTGTACA
* *
51049682 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
51049746 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
51049763 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
51049828 TGCGAGTTGA
65 TGCGAATTGA
51049838 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:51049849 original size:82 final size:81
Alignment explanation
Indices: 51049678--51049858 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
51049668 GATTAAATTG
* *
51049678 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
51049743 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
51049759 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
51049823 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
51049841 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
51049859 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:51057597 original size:40 final size:40
Alignment explanation
Indices: 51057514--51057776 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
51057504 TTGAATGCTG
* * * * * *
51057514 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
51057554 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
51057594 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
51057634 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
51057674 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51057714 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
51057753 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
51057777 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:51057796 original size:79 final size:80
Alignment explanation
Indices: 51057553--51057811 Score: 247
Period size: 80 Copynumber: 3.3 Consensus size: 80
51057543 AAGTGAATAT
* * * * * *
51057553 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
51057617 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
** * *
51057633 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
51057698 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
51057713 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
51057777 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
51057792 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
51057812 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:51059378 original size:20 final size:20
Alignment explanation
Indices: 51059355--51059398 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
51059345 CACCATAGTC
51059355 CAAACAG-GGACACCGAAGTG
1 CAAACAGAGG-CACCGAAGTG
*
51059375 CAAATAGAGGCACCGAAGTG
1 CAAACAGAGGCACCGAAGTG
51059395 CAAA
1 CAAA
51059399 TCTCGTACAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.91
21 2 0.09
ACGTcount: A:0.43, C:0.23, G:0.27, T:0.07
Consensus pattern (20 bp):
CAAACAGAGGCACCGAAGTG
Found at i:51062656 original size:35 final size:35
Alignment explanation
Indices: 51062585--51062656 Score: 108
Period size: 35 Copynumber: 2.1 Consensus size: 35
51062575 TGGTAGAAGT
* *
51062585 TAAATTTGTTTAGTTAAATTCAATTACTATTCATG
1 TAAATTTGTTTAGTTAAATTCAATTACTAATAATG
* *
51062620 TAAATTTGTTTGGTTAAATTCAATTTCTAATAATG
1 TAAATTTGTTTAGTTAAATTCAATTACTAATAATG
51062655 TA
1 TA
51062657 CCATATGCAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.35, C:0.07, G:0.10, T:0.49
Consensus pattern (35 bp):
TAAATTTGTTTAGTTAAATTCAATTACTAATAATG
Found at i:51063442 original size:17 final size:19
Alignment explanation
Indices: 51063406--51063443 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
51063396 GACATAATTT
51063406 AAAATGAAAAATTTTAAAA
1 AAAATGAAAAATTTTAAAA
*
51063425 AAAAT-AAATATTTTAAAA
1 AAAATGAAAAATTTTAAAA
51063443 A
1 A
51063444 TATTAGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.72
19 5 0.28
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (19 bp):
AAAATGAAAAATTTTAAAA
Found at i:51063537 original size:16 final size:16
Alignment explanation
Indices: 51063501--51063536 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
51063491 TCACTCTTTC
*
51063501 TTTTCCTTTTTTTTAG
1 TTTTACTTTTTTTTAG
51063517 TTTTACTTTATTTTTAG
1 TTTTACTTT-TTTTTAG
51063534 TTT
1 TTT
51063537 AAAATTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.11, C:0.08, G:0.06, T:0.75
Consensus pattern (16 bp):
TTTTACTTTTTTTTAG
Found at i:51072187 original size:23 final size:23
Alignment explanation
Indices: 51072155--51072199 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
51072145 GTCCTATTTC
51072155 TTCGTATTCTATTGGAGTTGTTG
1 TTCGTATTCTATTGGAGTTGTTG
* * *
51072178 TTCGTGTTCTATTTGTGTTGTT
1 TTCGTATTCTATTGGAGTTGTT
51072200 TGTGAGTATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.09, C:0.09, G:0.24, T:0.58
Consensus pattern (23 bp):
TTCGTATTCTATTGGAGTTGTTG
Found at i:51073561 original size:20 final size:20
Alignment explanation
Indices: 51073514--51073561 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
51073504 TGTATGATTC
*
51073514 GTAGTAGAGGCACACCTATT
1 GTAGTAGCGGCACACCTATT
51073534 GTAGTAGCGGCACACCTATT
1 GTAGTAGCGGCACACCTATT
51073554 GTAGTAGC
1 GTAGTAGC
51073562 CATAGATCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (20 bp):
GTAGTAGCGGCACACCTATT
Found at i:51082464 original size:8 final size:8
Alignment explanation
Indices: 51082453--51082494 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
51082443 GGCAAAAACT
*
51082453 GAAAAGCC
1 GAAATGCC
51082461 GAAATGCC
1 GAAATGCC
*
51082469 GAAAAGCC
1 GAAATGCC
*
51082477 GAAATGCT
1 GAAATGCC
51082485 GAAATGCC
1 GAAATGCC
51082493 GA
1 GA
51082495 TATTTTGAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.43, C:0.21, G:0.26, T:0.10
Consensus pattern (8 bp):
GAAATGCC
Found at i:51082474 original size:16 final size:16
Alignment explanation
Indices: 51082453--51082494 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
51082443 GGCAAAAACT
51082453 GAAAAGCCGAAATGCC
1 GAAAAGCCGAAATGCC
*
51082469 GAAAAGCCGAAATGCT
1 GAAAAGCCGAAATGCC
*
51082485 GAAATGCCGA
1 GAAAAGCCGA
51082495 TATTTTGAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.21, G:0.26, T:0.10
Consensus pattern (16 bp):
GAAAAGCCGAAATGCC
Found at i:51082949 original size:27 final size:26
Alignment explanation
Indices: 51082908--51083019 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 26
51082898 ACGAAGCGTC
51082908 CTGGTGGCTAC-GCCACAATTATCTGAT
1 CTGGTGGCT-CTGCCAC-ATTATCTGAT
51082935 CTGGTGGCTCTGCCACATATATCT-ATT
1 CTGGTGGCTCTGCCACAT-TATCTGA-T
51082962 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * * *
51082990 CTGGTGACTCTGTCGCATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
51083016 CTGG
1 CTGG
51083020 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 4, Indels: 13
0.82 0.04 0.14
Matches are distributed among these distances:
26 9 0.12
27 49 0.65
28 16 0.21
29 1 0.01
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:51083012 original size:54 final size:54
Alignment explanation
Indices: 51082908--51083019 Score: 147
Period size: 54 Copynumber: 2.1 Consensus size: 54
51082898 ACGAAGCGTC
*
51082908 CTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTATT
1 CTGGTGGCTACGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
* * * *
51082962 CTGGTGGCT-CTGCCACGATTATCTGTATCTGGTGACTCTGTCGCAT-TATCTGTT
1 CTGGTGGCTAC-GCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTATT
51083016 CTGG
1 CTGG
51083020 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
53 1 0.02
54 33 0.65
55 17 0.33
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTATT
Found at i:51083271 original size:175 final size:175
Alignment explanation
Indices: 51082980--51083330 Score: 702
Period size: 175 Copynumber: 2.0 Consensus size: 175
51082970 TCTGCCACGA
51082980 TTATCTGTATCTGGTGACTCTGTCGCATTATCTGTTCTGGCAGCCATGCTGCATATTTCAGGGGC
1 TTATCTGTATCTGGTGACTCTGTCGCATTATCTGTTCTGGCAGCCATGCTGCATATTTCAGGGGC
51083045 ATGTAGCGGTTGGGTGGGTCGAATAGTCTCCCCACATGGTGAAAGGTTGGTATAGGGGTGCATGT
66 ATGTAGCGGTTGGGTGGGTCGAATAGTCTCCCCACATGGTGAAAGGTTGGTATAGGGGTGCATGT
51083110 GGTTGGATATGGGTTGGGTTTTGCATAAACATGTAATATATGTTT
131 GGTTGGATATGGGTTGGGTTTTGCATAAACATGTAATATATGTTT
51083155 TTATCTGTATCTGGTGACTCTGTCGCATTATCTGTTCTGGCAGCCATGCTGCATATTTCAGGGGC
1 TTATCTGTATCTGGTGACTCTGTCGCATTATCTGTTCTGGCAGCCATGCTGCATATTTCAGGGGC
51083220 ATGTAGCGGTTGGGTGGGTCGAATAGTCTCCCCACATGGTGAAAGGTTGGTATAGGGGTGCATGT
66 ATGTAGCGGTTGGGTGGGTCGAATAGTCTCCCCACATGGTGAAAGGTTGGTATAGGGGTGCATGT
51083285 GGTTGGATATGGGTTGGGTTTTGCATAAACATGTAATATATGTTT
131 GGTTGGATATGGGTTGGGTTTTGCATAAACATGTAATATATGTTT
51083330 T
1 T
51083331 GTTCTGTTAT
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
175 176 1.00
ACGTcount: A:0.19, C:0.15, G:0.31, T:0.35
Consensus pattern (175 bp):
TTATCTGTATCTGGTGACTCTGTCGCATTATCTGTTCTGGCAGCCATGCTGCATATTTCAGGGGC
ATGTAGCGGTTGGGTGGGTCGAATAGTCTCCCCACATGGTGAAAGGTTGGTATAGGGGTGCATGT
GGTTGGATATGGGTTGGGTTTTGCATAAACATGTAATATATGTTT
Found at i:51088164 original size:20 final size:20
Alignment explanation
Indices: 51088139--51088179 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
51088129 ATTGTCGAAG
51088139 AGAGTTGA-TCACTTATATTT
1 AGAGTTGATTCACTT-TATTT
51088159 AGAGTTGATTCACTTTATTT
1 AGAGTTGATTCACTTTATTT
51088179 A
1 A
51088180 TCCCTATCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.29, C:0.10, G:0.15, T:0.46
Consensus pattern (20 bp):
AGAGTTGATTCACTTTATTT
Found at i:51097747 original size:21 final size:21
Alignment explanation
Indices: 51097722--51097766 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
51097712 AGATGAATAA
51097722 AATATA-AAAATT-ATAAGAT
1 AATATATAAAATTCATAAGAT
* *
51097741 AATATATTATATTCATAAGAT
1 AATATATAAAATTCATAAGAT
51097762 AATAT
1 AATAT
51097767 GAGTAATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 4 0.18
21 12 0.55
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (21 bp):
AATATATAAAATTCATAAGAT
Found at i:51105295 original size:18 final size:18
Alignment explanation
Indices: 51105274--51105333 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
51105264 GTCATCAAAT
51105274 TCATCAGATACAAGTTCA
1 TCATCAGATACAAGTTCA
*
51105292 TCATCCAGAT-C-A-TCCA
1 TCAT-CAGATACAAGTTCA
*
51105308 GTTCATCAGATACAAGCTCA
1 --TCATCAGATACAAGTTCA
51105328 TCATCA
1 TCATCA
51105334 TGGTTGTCAA
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
16 3 0.09
17 6 0.18
18 16 0.48
19 6 0.18
20 2 0.06
ACGTcount: A:0.35, C:0.28, G:0.10, T:0.27
Consensus pattern (18 bp):
TCATCAGATACAAGTTCA
Found at i:51105349 original size:36 final size:36
Alignment explanation
Indices: 51105252--51105357 Score: 124
Period size: 36 Copynumber: 2.9 Consensus size: 36
51105242 CTTCATCAAA
*
51105252 CTCATCATCTTGGTCATCAAATTCATCAGATACAAG
1 CTCATCATCATGGTCATCAAATTCATCAGATACAAG
* * * *
51105288 TTCATCATCCA-GATCATCCAGTTCATCAGATACAAG
1 CTCATCAT-CATGGTCATCAAATTCATCAGATACAAG
** *
51105324 CTCATCATCATGGTTGTCAACTTCATCAGATACA
1 CTCATCATCATGGTCATCAAATTCATCAGATACA
51105358 CTTTCCAATG
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
35 2 0.04
36 54 0.95
37 1 0.02
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.30
Consensus pattern (36 bp):
CTCATCATCATGGTCATCAAATTCATCAGATACAAG
Found at i:51114330 original size:24 final size:25
Alignment explanation
Indices: 51114294--51114341 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
51114284 ATTATTTAAT
51114294 TTTAATTAGTTAA-TTATTATGTTG
1 TTTAATTAGTTAATTTATTATGTTG
*
51114318 TTTACATTA-TTAATTTTTTATGTT
1 TTTA-ATTAGTTAATTTATTATGTT
51114342 TATATACTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.62
Consensus pattern (25 bp):
TTTAATTAGTTAATTTATTATGTTG
Found at i:51124483 original size:15 final size:13
Alignment explanation
Indices: 51124454--51124480 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
51124444 GCTCGGCAGG
51124454 GACACGCCCGTGT
1 GACACGCCCGTGT
51124467 GACACGCCCGTGT
1 GACACGCCCGTGT
51124480 G
1 G
51124481 TGATTACTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.37, G:0.33, T:0.15
Consensus pattern (13 bp):
GACACGCCCGTGT
Found at i:51124586 original size:13 final size:13
Alignment explanation
Indices: 51124568--51124595 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51124558 CTACCAAAGA
51124568 GACACACCCGTGT
1 GACACACCCGTGT
51124581 GACACACCCGTGT
1 GACACACCCGTGT
51124594 GA
1 GA
51124596 GTAAGTCCAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.36, G:0.25, T:0.14
Consensus pattern (13 bp):
GACACACCCGTGT
Found at i:51130357 original size:28 final size:28
Alignment explanation
Indices: 51130325--51130420 Score: 147
Period size: 28 Copynumber: 3.4 Consensus size: 28
51130315 TACATACATG
51130325 CATATGGCCCACTAGGCCCAATCTCATT
1 CATATGGCCCACTAGGCCCAATCTCATT
*
51130353 CATATGGCCCACAAGGCCCAATCTCATT
1 CATATGGCCCACTAGGCCCAATCTCATT
* *
51130381 CATATGGCCCATTAGGCCCTAATCACATT
1 CATATGGCCCACTAGGCCC-AATCTCATT
*
51130410 CATATGACCCA
1 CATATGGCCCA
51130421 TCTGACCCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 44 0.71
29 18 0.29
ACGTcount: A:0.28, C:0.34, G:0.14, T:0.24
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATCTCATT
Found at i:51130433 original size:29 final size:29
Alignment explanation
Indices: 51130320--51130438 Score: 84
Period size: 28 Copynumber: 4.2 Consensus size: 29
51130310 AAGTCTACAT
* * * *
51130320 ACATGCATATGGCCCACTAGGCCC-AATC
1 ACATTCATATGACCCATTAGACCCAAATC
* * ** *
51130348 TCATTCATATGGCCCACAAGGCCC-AATC
1 ACATTCATATGACCCATTAGACCCAAATC
* * * *
51130376 TCATTCATATGGCCCATTAGGCCCTAATC
1 ACATTCATATGACCCATTAGACCCAAATC
51130405 ACATTCATATGACCCATCT-GACCCAAATC
1 ACATTCATATGACCCAT-TAGACCCAAATC
51130434 A-ATTC
1 ACATTC
51130439 CAAGCCATGG
Statistics
Matches: 80, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
28 51 0.64
29 28 0.35
30 1 0.01
ACGTcount: A:0.29, C:0.34, G:0.13, T:0.24
Consensus pattern (29 bp):
ACATTCATATGACCCATTAGACCCAAATC
Found at i:51139509 original size:22 final size:22
Alignment explanation
Indices: 51139474--51139522 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
51139464 TTAAGGCACC
*
51139474 GTTAG-GAATTACTCCTTATTG
1 GTTAGTGAATGACTCCTTATTG
51139495 GTTAGTGAATGACTCCTTATTG
1 GTTAGTGAATGACTCCTTATTG
51139517 GTTAGT
1 GTTAGT
51139523 CTTTGGAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.22, C:0.12, G:0.22, T:0.43
Consensus pattern (22 bp):
GTTAGTGAATGACTCCTTATTG
Found at i:51143518 original size:48 final size:48
Alignment explanation
Indices: 51143447--51143622 Score: 262
Period size: 48 Copynumber: 3.7 Consensus size: 48
51143437 ATGAGATCCC
*
51143447 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
** *
51143495 GTGTAAGACCATGTCTGGGACATGGCATTAGCATTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
* * *
51143543 GTGTAAGACCATGTTTGGGACATAGCATCGGTGTTGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
* * *
51143591 GTGTAAAACCATATCTGGGATATGGCATCGGC
1 GTGTAAGACCATGTCTGGGACATGGCATCGGC
51143623 ACCGGTATGT
Statistics
Matches: 112, Mismatches: 16, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 112 1.00
ACGTcount: A:0.24, C:0.16, G:0.31, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCCA
Found at i:51143632 original size:96 final size:97
Alignment explanation
Indices: 51143447--51143650 Score: 268
Period size: 96 Copynumber: 2.1 Consensus size: 97
51143437 ATGAGATCCC
* * * *
51143447 GTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGATATGTGTGCTAGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATAGCATCGGCGTTGATATGTGTGCCAGTGTAAAACCATATCTG
* **
51143512 GGACATGGCATTAGCATTGATATGTG-TGCCA
66 GGACATGGCATCAGCACCGATATGTGATGCCA
* *
51143543 GTGTAAGACCATGTTTGGGACATAGCATCGGTGTTGATATGTGTGCCAGTGTAAAACCATATCTG
1 GTGTAAGACCATGTCTGGGACATAGCATCGGCGTTGATATGTGTGCCAGTGTAAAACCATATCTG
* * * **
51143608 GGATATGGCATCGGCACCGGTATGTGATTTCA
66 GGACATGGCATCAGCACCGATATGTGATGCCA
51143640 -TGTAAGACCAT
1 GTGTAAGACCAT
51143651 ATCTAGGATA
Statistics
Matches: 93, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
96 90 0.97
97 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (97 bp):
GTGTAAGACCATGTCTGGGACATAGCATCGGCGTTGATATGTGTGCCAGTGTAAAACCATATCTG
GGACATGGCATCAGCACCGATATGTGATGCCA
Found at i:51143692 original size:42 final size:42
Alignment explanation
Indices: 51143628--51143717 Score: 126
Period size: 42 Copynumber: 2.1 Consensus size: 42
51143618 TCGGCACCGG
* * * *
51143628 TATGTGATTTCATGTAAGACCATATCTAGGATATGGCGTTGA
1 TATGAGATTTCATGTAAGACCATATCTAGGACATGGCATCGA
* *
51143670 TATGAGATTTCATGTAAGACCATGTCTTGGACATGGCATCGA
1 TATGAGATTTCATGTAAGACCATATCTAGGACATGGCATCGA
51143712 TATGAG
1 TATGAG
51143718 GTCCTGTATA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.33
Consensus pattern (42 bp):
TATGAGATTTCATGTAAGACCATATCTAGGACATGGCATCGA
Found at i:51148114 original size:145 final size:145
Alignment explanation
Indices: 51147851--51148140 Score: 580
Period size: 145 Copynumber: 2.0 Consensus size: 145
51147841 ATTGTATTTT
51147851 GCATAACAACTCTAACCAAGCTTTGTTATCTGCATAGTTTTTAGATTTGTGTGATCAAACTGTTT
1 GCATAACAACTCTAACCAAGCTTTGTTATCTGCATAGTTTTTAGATTTGTGTGATCAAACTGTTT
51147916 CAAAGCTAACACGTCCCTGTTACCTCACACAAATGCTAAGAAACCCTTAGTAAATAAGGGTCAAT
66 CAAAGCTAACACGTCCCTGTTACCTCACACAAATGCTAAGAAACCCTTAGTAAATAAGGGTCAAT
51147981 AATAAGCGTATTTAA
131 AATAAGCGTATTTAA
51147996 GCATAACAACTCTAACCAAGCTTTGTTATCTGCATAGTTTTTAGATTTGTGTGATCAAACTGTTT
1 GCATAACAACTCTAACCAAGCTTTGTTATCTGCATAGTTTTTAGATTTGTGTGATCAAACTGTTT
51148061 CAAAGCTAACACGTCCCTGTTACCTCACACAAATGCTAAGAAACCCTTAGTAAATAAGGGTCAAT
66 CAAAGCTAACACGTCCCTGTTACCTCACACAAATGCTAAGAAACCCTTAGTAAATAAGGGTCAAT
51148126 AATAAGCGTATTTAA
131 AATAAGCGTATTTAA
51148141 TAAGTAAAGG
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
145 145 1.00
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.31
Consensus pattern (145 bp):
GCATAACAACTCTAACCAAGCTTTGTTATCTGCATAGTTTTTAGATTTGTGTGATCAAACTGTTT
CAAAGCTAACACGTCCCTGTTACCTCACACAAATGCTAAGAAACCCTTAGTAAATAAGGGTCAAT
AATAAGCGTATTTAA
Found at i:51166969 original size:39 final size:39
Alignment explanation
Indices: 51166805--51166987 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
51166795 TTGAATGCTG
* * * * * * *
51166805 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
51166845 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
51166885 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
51166925 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
51166964 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
51166988 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:51167007 original size:79 final size:80
Alignment explanation
Indices: 51166841--51167022 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
51166831 GCTAAGTGAA
* * * *
51166841 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
51166905 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
51166921 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
51166985 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
51167000 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
51167023 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:51169949 original size:93 final size:94
Alignment explanation
Indices: 51169790--51169973 Score: 316
Period size: 93 Copynumber: 2.0 Consensus size: 94
51169780 AAACCTTAGC
*
51169790 AATAGGTAATAATTACTGAAATACCCTTATGCATGCAAAATTACGATTTTACCCCTAGGATTA-T
1 AATAGGTAATAATTACTGAAATACCCTTATGCATGCAAAATTACGATTTTACCCCTAGGACTATT
51169854 TTTTTCTAAAAAGCATGATGTTCTGTAGT
66 TTTTTCTAAAAAGCATGATGTTCTGTAGT
* * *
51169883 AATAGGTAATAATTACTGAAATACCCTTATGTATGCACAATTACGATTTTACCCCTAGGGCTATT
1 AATAGGTAATAATTACTGAAATACCCTTATGCATGCAAAATTACGATTTTACCCCTAGGACTATT
*
51169948 TTTTTCTGAAAAGCATGATGTTCTGT
66 TTTTTCTAAAAAGCATGATGTTCTGT
51169974 TTCTGTATAC
Statistics
Matches: 85, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
93 59 0.69
94 26 0.31
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.37
Consensus pattern (94 bp):
AATAGGTAATAATTACTGAAATACCCTTATGCATGCAAAATTACGATTTTACCCCTAGGACTATT
TTTTTCTAAAAAGCATGATGTTCTGTAGT
Done.