Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 20 of 186
Found at i:5989450 original size:26 final size:26
Alignment explanation
Indices: 5989400--5989451 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
5989390 TATATGTATT
*
5989400 AAAATATATACGTAATAATAGAAATA
1 AAAATATATACGTAATAATAAAAATA
* * *
5989426 AAAATGTATACGTAGTATTAAAAATA
1 AAAATATATACGTAATAATAAAAATA
5989452 TATACATAAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.58, C:0.04, G:0.10, T:0.29
Consensus pattern (26 bp):
AAAATATATACGTAATAATAAAAATA
Found at i:5991258 original size:44 final size:44
Alignment explanation
Indices: 5991190--5991634 Score: 244
Period size: 44 Copynumber: 10.0 Consensus size: 44
5991180 CCATGATGAA
** * *
5991190 ATCTTCGATCTGCTTCATTGTAAGCACAGGAATATCAGATCTGCT
1 ATCTTCGATCTG-TTCCCTATAAGCACAGGAATATCAAATCTGCT
* * **
5991235 ATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCT
1 ATCTTCGATCTGTTCCCTATAAGCACAGGAATATCAAATCTGCT
* * * * * * ***
5991279 GTTTTC-AACTTGTTCCCTATAAGCACAGGGAT-GC-CATGCTAAA
1 ATCTTCGATC-TGTTCCCTATAAGCACAGGAATATCAAAT-CTGCT
* * *
5991322 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCATATCTGCT
1 ATCTTCGATCTG-TTCCCTATAAGCACAGGAATATCAAATCTGCT
**
5991367 ATCTTCGATCTGTTCCCTATAAGCACAAGG-ATGCCAAATTCTGCT
1 ATCTTCGATCTGTTCCCTATAAGCAC-AGGAATATCAAA-TCTGCT
* * * * * * **
5991412 GTTTTC-AACTTGTTCCCTATAAGCACAGGGAT-GC-CATGCTGAA
1 ATCTTCGATC-TGTTCCCTATAAGCACAGGAATATCAAAT-CTGCT
* * * *
5991455 ATCTTCGATCTACTTCACTGTAAGCACAGGAATATCAGATCTGCT
1 ATCTTCGATCT-GTTCCCTATAAGCACAGGAATATCAAATCTGCT
* **
5991500 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATTCTGCT
1 ATCTTCGATCTGTTCCCTATAAGCACAGGAATATCAAA-TCTGCT
* * * * * * * **
5991545 GTTTTC-AACTTGTTCCCTATAAACACAGGGAT-GC-CATGCTGAA
1 ATCTTCGATC-TGTTCCCTATAAGCACAGGAATATCAAAT-CTGCT
** * * *
5991588 ATCTTCGATCTGTTTTACTGTAAGCACAGGAATGTCAGATCTGCT
1 ATCTTCGATCTG-TTCCCTATAAGCACAGGAATATCAAATCTGCT
5991633 AT
1 AT
5991635 TTCAGTCTGC
Statistics
Matches: 300, Mismatches: 78, Indels: 44
0.71 0.18 0.10
Matches are distributed among these distances:
42 4 0.01
43 30 0.10
44 151 0.50
45 109 0.36
46 6 0.02
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.32
Consensus pattern (44 bp):
ATCTTCGATCTGTTCCCTATAAGCACAGGAATATCAAATCTGCT
Found at i:5991267 original size:88 final size:86
Alignment explanation
Indices: 5991164--5991535 Score: 277
Period size: 88 Copynumber: 4.2 Consensus size: 86
5991154 CTTTGATCCT
* * *
5991164 TATAAACACAGGGATGCCATGATGAAATCTTCGATCTGCTTCATTGTAAGCACAGGAATATCAGA
1 TATAAGCACAGGGATGCCAT-ATGAAATCTTCGATCTG-TTCACTATAAGCACAGGAATATCAGA
*
5991229 TCTGCTATCTTCGATCTATTCCC
64 TCTGCTATCTTCGATCTGTTCCC
* *** * * * * * *
5991252 TATAAGCACAGGGATGCCAAATCTGCTGTTTTC-AACTTGTTCCCTATAAGCACAGGGAT-GC-C
1 TATAAGCACAGGGATGCC--ATATGAAATCTTCGATC-TGTTCACTATAAGCACAGGAATATCAG
*** *
5991314 ATGCTAAAATCTTCGATCTGCTTCAC
63 AT-CTGCTATCTTCGATCTG-TTCCC
* * ** ** * ** *
5991340 TGTAAGCACAGGAATATCATATCTGCTATCTTCGATCTGTTCCCTATAAGCACAAGG-ATGCCAA
1 TATAAGCACAGGGATGCCATA--TGAAATCTTCGATCTGTTCACTATAAGCAC-AGGAATATCAG
* * *
5991404 ATTCTGCTGTTTTC-AACTTGTTCCC
63 A-TCTGCTATCTTCGATC-TGTTCCC
* * *
5991429 TATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATATCAGA
1 TATAAGCACAGGGATGCCAT-ATGAAATCTTCGATCT-GTTCACTATAAGCACAGGAATATCAGA
5991494 TCTGCTATCTTCGATCTGTTCCC
64 TCTGCTATCTTCGATCTGTTCCC
5991517 TATAAGCACAGGGATGCCA
1 TATAAGCACAGGGATGCCA
5991536 AATTCTGCTG
Statistics
Matches: 216, Mismatches: 51, Indels: 34
0.72 0.17 0.11
Matches are distributed among these distances:
86 4 0.02
87 14 0.06
88 131 0.61
89 55 0.25
90 11 0.05
91 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (86 bp):
TATAAGCACAGGGATGCCATATGAAATCTTCGATCTGTTCACTATAAGCACAGGAATATCAGATC
TGCTATCTTCGATCTGTTCCC
Found at i:5991592 original size:88 final size:87
Alignment explanation
Indices: 5991235--5991638 Score: 316
Period size: 88 Copynumber: 4.6 Consensus size: 87
5991225 CAGATCTGCT
* * *
5991235 ATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACTTGTTCCCTATA
1 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
*
5991300 AGCACAGGGATGCCATGCTAAA
66 AGCACAGGGATGCCATGCTGAA
* * * ** * *
5991322 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCATATCTGCTATCTTCGA-TCTGTTCCCTA
1 ATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACT-TGTTCCCTA
* * **
5991386 TAAGCACAAGGATGCCAAATTCTGCT
64 TAAGCACAGGGATGCC--ATGCTGAA
* * * ** * ** *
5991412 GTTTTC-AACTTGTTCCCTATAAGCACAGGGATGCC--ATGCTGAAATCTTCGATCTACTTCACT
1 ATCTTCGATC-TGTTCCCTATAAGCACAGGGATGCCAAAT-CTGCTATCTTC-AACTTGTTCCCT
* * ** **
5991474 GTAAGCACAGGAATATCA-GATCTGCT
63 ATAAGCACAGGGATGCCATG--CTGAA
* *
5991500 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATTCTGCTGTTTTCAACTTGTTCCCTAT
1 ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAA-TCTGCTATCTTCAACTTGTTCCCTAT
*
5991565 AAACACAGGGATGCCATGCTGAA
65 AAGCACAGGGATGCCATGCTGAA
** * * * *
5991588 ATCTTCGATCTGTTTTACTGTAAGCACAGGAATGTCAGATCTGCTAT-TTCA
1 ATCTTCGATCTG-TTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCA
5991639 GTCTGCTCCT
Statistics
Matches: 240, Mismatches: 61, Indels: 32
0.72 0.18 0.10
Matches are distributed among these distances:
87 19 0.08
88 120 0.50
89 80 0.33
90 20 0.08
91 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (87 bp):
ATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
AGCACAGGGATGCCATGCTGAA
Found at i:5991663 original size:133 final size:133
Alignment explanation
Indices: 5991164--5991634 Score: 827
Period size: 133 Copynumber: 3.5 Consensus size: 133
5991154 CTTTGATCCT
* *
5991164 TATAAACACAGGGATGCCATGATGAAATCTTCGATCTGCTTCATTGTAAGCACAGGAATATCAGA
1 TATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCAGA
*
5991229 TCTGCTATCTTCGATCTATTCCCTATAAGCACAGGGATGCCAAA-TCTGCTGTTTTCAACTTGTT
66 TCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATTCTGCTGTTTTCAACTTGTT
5991293 CCC
131 CCC
* * *
5991296 TATAAGCACAGGGATGCCATGCTAAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCATA
1 TATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCAGA
*
5991361 TCTGCTATCTTCGATCTGTTCCCTATAAGCACAAGGATGCCAAATTCTGCTGTTTTCAACTTGTT
66 TCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATTCTGCTGTTTTCAACTTGTT
5991426 CCC
131 CCC
* *
5991429 TATAAGCACAGGGATGCCATGCTGAAATCTTCGATCTACTTCACTGTAAGCACAGGAATATCAGA
1 TATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCAGA
5991494 TCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATTCTGCTGTTTTCAACTTGTT
66 TCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATTCTGCTGTTTTCAACTTGTT
5991559 CCC
131 CCC
* * *
5991562 TATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGTTTTACTGTAAGCACAGGAATGTCAGA
1 TATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCAGA
5991627 TCTGCTAT
66 TCTGCTAT
5991635 TTCAGTCTGC
Statistics
Matches: 322, Mismatches: 16, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
132 102 0.32
133 220 0.68
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (133 bp):
TATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATATCAGA
TCTGCTATCTTCGATCTGTTCCCTATAAGCACAGGGATGCCAAATTCTGCTGTTTTCAACTTGTT
CCC
Found at i:5992041 original size:204 final size:204
Alignment explanation
Indices: 5991691--5993263 Score: 1251
Period size: 204 Copynumber: 7.5 Consensus size: 204
5991681 TCTTCTTTCG
* ** * * * *
5991691 CTGAAACTTCAAGGAAATCTGCTGTAACTTTTAGTCGTTCCAACGCCATTTTAGGGAGAAGAGA-
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
*
5991755 TCTACTGAAACTTTAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAG
66 TC-ACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAG
*
5991820 AGATTCACTGAAACTTCAAGGAGATTTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAG
130 AGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAG
5991885 AAGAGATTCA
195 AAGAGATTCA
*
5991895 CTGAAACTTCAAGGAGATTTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
*
5991960 TCACTGAAACTTCAAGGAGATTTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGA
66 TCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGA
* * * * *
5992025 GATTCATTGAAACTTCAAGAAGATCTGCTGCGACTTTTAGCCACTCCAACGCCATTTCAGGAAGA
131 GATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGA
*
5992090 AAAGATTCA
196 AGAGATTCA
* * * *
5992099 CTGAAACTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAA-A-AT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGA-
* ***** * * * *** * * ** * * *
5992162 TTGGA-T-AAGACTT-GTTTTGATCTTCTTTCGC---T-GAAACTTCAAGGAAATCTGCTGTAAC
65 TT-CACTGAA-ACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCAT-TTCAGGAA-
** * ** * * * *** * ** * *
5992220 TTTTAGTCG-TTCCAAC-GCCATTTTAGGGAGAAGAGATCTACTGAAACTTTAAGGAGATCTGCT
126 --GAAG-AGATT-C-ACTGAAACTTCA---AG--GAGATCTGCTGTGGCTTTTAGCCG--CTCCA
** * * *** **
5992283 GTGGC-TTTTAGCCGCTCCAACGCCATTTCAA
179 ACGCCATTTCAG--G-AAGAA-GAGA-TTC-A
** * ** * * * * * *** * * **
5992314 GAAGAATAGATTCACTGA-AACTTCAAG-GAGATCTGCTGTGGCTTTTAGCC-GCTCCAATGCCA
1 -CTGAA-A-CTTCAAGGAGATCTGC-TGTG-G--CT--TTTAGCCGCT--CCAACGCC-ATTTCA
** * * * **
5992376 TTTTAGGGAGAAATTTTGCTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCC
54 --GGAAGAAGAGA-TTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCC
* * * **
5992441 ATTTTAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCTACTCCAAC
116 ATTTCAGGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAAC
* *
5992506 GCCATTTCAGGGAGAA-A-ATTTA
181 GCCATTTCAGGAAGAAGAGATTCA
* * * *
5992528 CTGAAACTTCAAGGAGATTTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
* *
5992593 CCACTGAAACTTCAAAAGAGATCTGCTATGGCTTTTAGCCGTTCCAATTTTAGCCGCTCCAACGC
66 TCACTGAAACTTC-AAGGAGATCTGC--T-G----T-G--G---C--TTTTAGCCGCTCCAACGC
* * *
5992658 TATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAA
115 CATTTCAGGAAGAAGAGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAA
* * *
5992723 CGCTATTTCAGGAAAAAGAGATCCA
180 CGCCATTTCAGGAAGAAGAGATTCA
* *
5992748 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
* * *
5992813 CCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGAAGAATA
66 TCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGA
* *
5992878 GATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGTCATTTCAGGAAGA
131 GATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGA
5992943 AGAGATTCA
196 AGAGATTCA
* * * * * *
5992952 TTGAAACTTCAAGAAGATCTGCTGCGACTTTTAGCCACTCCAACGCCATTTCAGGAAGAAAAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
* * *
5993017 TCACTGAAACTTCAAGGAGATCTGATGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGA
66 TCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGA
* * * * * *
5993082 GATCCACTGAAACTTCAAAAGAGATCTGCTATGGCTTTTAGCCGTTCCAATGCCATTTCAGGGAG
131 GATTCACTGAAACTTC-AAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAG
*
5993147 AA-A-ATTTA
195 AAGAGATTCA
** * *
5993155 CTGAAACTTCAAGGAGATCTATTGTGGCTTTTAGCCGTTCCAACGCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
* * * *
5993220 CCATTGAAACTTCAAGCAGATGTGCTGTGGCTTTTAGCCGCTCC
66 TCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCC
5993264 NGAAATCCAT
Statistics
Matches: 1064, Mismatches: 233, Indels: 145
0.74 0.16 0.10
Matches are distributed among these distances:
198 9 0.01
199 6 0.01
202 27 0.03
203 129 0.12
204 471 0.44
205 53 0.05
206 7 0.01
207 5 0.00
208 16 0.02
209 8 0.01
210 6 0.01
211 11 0.01
212 7 0.01
213 5 0.00
214 4 0.00
215 3 0.00
216 6 0.01
217 6 0.01
218 100 0.09
219 14 0.01
220 80 0.08
221 5 0.00
222 10 0.01
223 19 0.02
224 5 0.00
225 2 0.00
226 2 0.00
227 3 0.00
228 16 0.02
229 15 0.01
232 5 0.00
233 9 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.28
Consensus pattern (204 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
TCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGA
GATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGA
AGAGATTCA
Found at i:5992160 original size:68 final size:68
Alignment explanation
Indices: 5991691--5992158 Score: 731
Period size: 68 Copynumber: 6.9 Consensus size: 68
5991681 TCTTCTTTCG
* ** * * * *
5991691 CTGAAACTTCAAGGAAATCTGCTGTAACTTTTAGTCGTTCCAACGCCATTTTAGGGAGAAGAGA-
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
5991755 TCTA
66 TC-A
*
5991759 CTGAAACTTTAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
5991824 TCA
66 TCA
*
5991827 CTGAAACTTCAAGGAGATTTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
5991892 TCA
66 TCA
*
5991895 CTGAAACTTCAAGGAGATTTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
5991960 TCA
66 TCA
*
5991963 CTGAAACTTCAAGGAGATTTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
5992028 TCA
66 TCA
* * * * * *
5992031 TTGAAACTTCAAGAAGATCTGCTGCGACTTTTAGCCACTCCAACGCCATTTCAGGAAGAAAAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
5992096 TCA
66 TCA
* * * *
5992099 CTGAAACTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAA
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAA
5992159 AATTTGGATA
Statistics
Matches: 373, Mismatches: 26, Indels: 2
0.93 0.06 0.00
Matches are distributed among these distances:
68 371 0.99
69 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
TCA
Found at i:5992280 original size:68 final size:68
Alignment explanation
Indices: 5992192--5992639 Score: 582
Period size: 68 Copynumber: 6.6 Consensus size: 68
5992182 TCTTCTTTCG
* ** * * *
5992192 CTGAAACTTCAAGGAAATCTGCTGTAACTTTTAGTCGTTCCAACGCCATTTTAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAGAAGAGAT
5992257 CTA
66 CTA
* * * *
5992260 CTGAAACTTTAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGAAGAATAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAGAAGAGAT
5992325 -TCA
66 CT-A
* * *
5992328 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTTAGGGAGAA-A-TT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAGAAGAGAT
* *
5992391 TTG
66 CTA
*
5992394 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAGAAGAGAT
*
5992459 CCA
66 CTA
** * *
5992462 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCTACTCCAACGCCATTTCAGGGAGAA-A-AT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAGAAGAGAT
*
5992525 TTA
66 CTA
* * *
5992528 CTGAAACTTCAAGGAGATTTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAGAAGAGAT
*
5992593 CCA
66 CTA
* * *
5992596 CTGAAACTTCAAAAGAGATCTGCTATGGCTTTTAGCCGTTCCAA
1 CTGAAACTTC-AAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAA
5992640 TTTTAGCCGC
Statistics
Matches: 328, Mismatches: 45, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
66 114 0.35
67 6 0.02
68 180 0.55
69 28 0.09
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (68 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAGAAGAGAT
CTA
Found at i:5992364 original size:229 final size:229
Alignment explanation
Indices: 5991963--5992393 Score: 666
Period size: 229 Copynumber: 1.9 Consensus size: 229
5991953 AAGAGATTCA
* * **
5991963 CTGAAACTTCAAGGAGATTTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAAATCTGCTGTAACTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
* *
5992028 TCATTGAAACTTCAAGAAGATCTGCTGCGACTTTTAGCCACTCCAACGCCATTTCAGGAAGAAAA
66 TCACTGAAACTTCAAGAAGATCTGCTGCGACTTTTAGCCACTCCAACGCCATTTCAAGAAGAAAA
*
5992093 GATTCACTGAAACTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGA
131 GATTCACTGAAACTTCAAGGAGATCTGCTATGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGA
5992158 AAATTTGGATAAGACTTGTTTTGATCTTCTTTCG
196 AAATTTGGATAAGACTTGTTTTGATCTTCTTTCG
* * * *
5992192 CTGAAACTTCAAGGAAATCTGCTGTAACTTTTAGTCGTTCCAACGCCATTTTAGGGAGAAGAGA-
1 CTGAAACTTCAAGGAAATCTGCTGTAACTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
* * * * * *
5992256 TCTACTGAAACTTTAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGAAGAAT
66 TC-ACTGAAACTTCAAGAAGATCTGCTGCGACTTTTAGCCACTCCAACGCCATTTCAAGAAGAAA
* *
5992321 AGATTCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTTAGGGAG
130 AGATTCACTGAAACTTCAAGGAGATCTGCTATGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAG
*
5992386 AAATTTTG
195 AAAATTTG
5992394 CTGAAACTTC
Statistics
Matches: 181, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
228 2 0.01
229 179 0.99
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (229 bp):
CTGAAACTTCAAGGAAATCTGCTGTAACTTTTAGCCGCTCCAACGCCATTTCAGGAAGAAGAGAT
TCACTGAAACTTCAAGAAGATCTGCTGCGACTTTTAGCCACTCCAACGCCATTTCAAGAAGAAAA
GATTCACTGAAACTTCAAGGAGATCTGCTATGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGA
AAATTTGGATAAGACTTGTTTTGATCTTCTTTCG
Found at i:5992464 original size:134 final size:134
Alignment explanation
Indices: 5992192--5993263 Score: 911
Period size: 136 Copynumber: 7.8 Consensus size: 134
5992182 TCTTCTTTCG
* ** * *
5992192 CTGAAACTTCAAGGAAATCTGCTGTAACTTTTAGTCGTTCCAACGCCATTTTAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAA-A-AT
* * * * * *
5992257 CTACTGAAACTTTAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGAAGAATA
64 TTACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGA
*
5992322 GATTCA
129 GATCCA
* *
5992328 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGCCATTTTAGGGAGAAATTTT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAAAATTT
*
5992393 GCTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGA
66 ACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGA
5992458 TCCA
131 TCCA
** *
5992462 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCTACTCCAACGCCATTTCAGGGAGAAAATTT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAAAATTT
* *
5992527 ACTGAAACTTCAAGGAGATTTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGA
66 ACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGA
5992592 TCCA
131 TCCA
* *
5992596 CTGAAACTTCAAAAGAGATCTGCTATGGCTTTTAGCCGTTCCAATTTTAGCCGCTCCAACGCTAT
1 CTGAAACTTC-AAGGAGATCTGC--T-G----T-G--G---C--TTTTAGCCGCTCCAACGCCAT
* * ** * *** ** ** * ** ** *** * *
5992661 TTCA-GGAAAAAGAGATCCACTGAAACTTCAAG-GAGAT-CTGCTGTGGCTTTTAGC-CGCTCCA
50 TTTAGGGAGAAA-ATTTAC-TGAAACTTCAAGGAGATCTGCTG-TG-GCTTTTAGCCGCTC-CAA
* ** *
5992722 -ACGC-TATTTCAGGAAAAAGAGATCCA
110 CGC-CAT-TTTAGGAAA-AAGAGATCCA
* * * *
5992748 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAA-A-AT
** * * * *
5992813 CCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAAGAAGAATA
64 TTACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGA
*
5992878 GATTCA
129 GATCCA
* * * *
5992884 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAATGTCATTTCAGGAAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAA-A-AT
* * * * * * *
5992949 TCATTGAAACTTCAAGAAGATCTGCTGCGACTTTTAGCCACTCCAACGCCATTTCAGGAAGAAA-
64 TTACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAA-AAAG
*
5993013 AGATTCA
128 AGATCCA
* * *
5993020 CTGAAACTTCAAGGAGATCTGATGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAA-A-AT
** * * * * * * *
5993085 CCACTGAAACTTCAAAAGAGATCTGCTATGGCTTTTAGCCGTTCCAATGCCATTTCAGGGAGAA-
64 TTACTGAAACTTC-AAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAG
**
5993149 A-ATTTA
128 AGATCCA
** * *
5993155 CTGAAACTTCAAGGAGATCTATTGTGGCTTTTAGCCGTTCCAACGCCATTTCAGGGAGAAGAGAT
1 CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAA-A-AT
** * * *
5993220 CCATTGAAACTTCAAGCAGATGTGCTGTGGCTTTTAGCCGCTCC
64 TTACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCC
5993264 NGAAATCCAT
Statistics
Matches: 778, Mismatches: 125, Indels: 68
0.80 0.13 0.07
Matches are distributed among these distances:
134 226 0.29
135 87 0.11
136 282 0.36
137 64 0.08
138 15 0.02
139 3 0.00
141 1 0.00
142 1 0.00
143 2 0.00
144 1 0.00
145 1 0.00
148 2 0.00
149 9 0.01
150 34 0.04
151 30 0.04
152 20 0.03
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.27
Consensus pattern (134 bp):
CTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGGAGAAAATTT
ACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGA
TCCA
Found at i:5992645 original size:15 final size:15
Alignment explanation
Indices: 5992625--5992654 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
5992615 CTGCTATGGC
*
5992625 TTTTAGCCGTTCCAA
1 TTTTAGCCGCTCCAA
5992640 TTTTAGCCGCTCCAA
1 TTTTAGCCGCTCCAA
5992655 CGCTATTTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (15 bp):
TTTTAGCCGCTCCAA
Found at i:5992749 original size:68 final size:68
Alignment explanation
Indices: 5992640--5993263 Score: 894
Period size: 68 Copynumber: 9.2 Consensus size: 68
5992630 GCCGTTCCAA
*
5992640 TTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
1 TTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
5992705 GGC
66 GGC
*
5992708 TTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
1 TTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
5992773 GGC
66 GGC
*
5992776 TTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
1 TTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
5992841 GGC
66 GGC
* * * *
5992844 TTTTAGCCGCTCCAACGCCATTTCAAGAAGAATAGATTCACTGAAACTTCAAGGAGATCTGCTGT
1 TTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
5992909 GGC
66 GGC
* * * * * * *
5992912 TTTTAGCCGCTCCAATGTCATTTCAGGAAGAAGAGATTCATTGAAACTTCAAGAAGATCTGCTGC
1 TTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
*
5992977 GAC
66 GGC
* * *
5992980 TTTTAGCCACTCCAACGCCATTTCAGGAAGAAA-AGATTCACTGAAACTTCAAGGAGATCTGATG
1 TTTTAGCCGCTCCAACGCCATTTCAGGAA-AAAGAGATCCACTGAAACTTCAAGGAGATCTGCTG
5993044 TGGC
65 TGGC
* * *
5993048 TTTTAGCCGCTCCAACGCCATTTTAGGAAAAAGAGATCCACTGAAACTTCAAAAGAGATCTGCTA
1 TTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTTC-AAGGAGATCTGCTG
5993113 TGGC
65 TGGC
* * * * ** **
5993117 TTTTAGCCGTTCCAATGCCATTTCAGGGAGAA-A-ATTTACTGAAACTTCAAGGAGATCTATTGT
1 TTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
5993180 GGC
66 GGC
* * * * * *
5993183 TTTTAGCCGTTCCAACGCCATTTCAGGGAGAAGAGATCCATTGAAACTTCAAGCAGATGTGCTGT
1 TTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
5993248 GGC
66 GGC
5993251 TTTTAGCCGCTCC
1 TTTTAGCCGCTCC
5993264 NGAAATCCAT
Statistics
Matches: 503, Mismatches: 48, Indels: 10
0.90 0.09 0.02
Matches are distributed among these distances:
66 45 0.09
67 17 0.03
68 397 0.79
69 44 0.09
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (68 bp):
TTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGT
GGC
Found at i:5993296 original size:50 final size:49
Alignment explanation
Indices: 5993218--5993313 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 49
5993208 GGGAGAAGAG
*
5993218 ATCCATTGAAACTTCAAGCAGATGTGCTGTGGCTTTTAGCCGCTCCNGAA
1 ATCCATTGAAACTTCAAGCAGATCTGCTGTGGCTTTTAGCCGCTCC-GAA
*
5993268 ATCCATT-AAACCTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCC
1 ATCCATTGAAA-CTTCAAGCAGATCTGCTGTGGCTTTTAGCCGCTCC
5993314 AACGCCATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
49 3 0.07
50 40 0.93
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.29
Consensus pattern (49 bp):
ATCCATTGAAACTTCAAGCAGATCTGCTGTGGCTTTTAGCCGCTCCGAA
Found at i:5993414 original size:184 final size:184
Alignment explanation
Indices: 5993102--5993448 Score: 543
Period size: 184 Copynumber: 1.9 Consensus size: 184
5993092 AACTTCAAAA
* *
5993102 GAGATCTGCTATGGCTTTTAGCCGTTCCAATGCCATTTCAGGGAGAAAATTTACTGAAACTTCAA
1 GAGATCTGCTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAAATTTACTGAAACTTCAA
* * * * *
5993167 GGAGATCTATTGTGGCTTTTAGCCGTTCCAACGCCATTTCAGGGAGAAGAGATCCATTGAAAC-T
66 GGAGATCTATTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTT
* *
5993231 TCAAGCAGATGTGCTGTGGCTTTTAGCCGCTCCNGAAATCCATTAAACCTTCAAG
131 TAAAGCAGATCTGCTGTGGCTTTTAGCCGCTCC-GAAATCCATTAAACCTTCAAG
* * *
5993286 GAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAAATTTGCTGAAACTTTAA
1 GAGATCTGCTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAAATTTACTGAAACTTCAA
* *
5993351 GGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGATCCACTGAAACTT
66 GGAGATCTATTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTT
*
5993416 TAAAGGAGATCTGCTGTGGCTTTTAGCCGCTCC
131 TAAAGCAGATCTGCTGTGGCTTTTAGCCGCTCC
5993449 AACGCCATTT
Statistics
Matches: 147, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
184 116 0.79
185 31 0.21
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (184 bp):
GAGATCTGCTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAAATTTACTGAAACTTCAA
GGAGATCTATTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTGAAACTT
TAAAGCAGATCTGCTGTGGCTTTTAGCCGCTCCGAAATCCATTAAACCTTCAAG
Found at i:5993539 original size:319 final size:319
Alignment explanation
Indices: 5992950--5993794 Score: 1094
Period size: 319 Copynumber: 2.6 Consensus size: 319
5992940 AGAAGAGATT
* * * * *
5992950 CATTGAAA-CTTCAAGAAGATCTGCTGCGACTTTTAGCCACTCCAACGCCATTTCAGGAAGAAAA
1 CATTGAAACCTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAG-AAA
*
5993014 GATTCACTGAAACTTCAAGGAGATCTGATGTGGCTTTTAGCCGCTCCAACGCCATTTTAGGAAAA
65 GATTCACTGAAACTTCAAGGAGATCTGATGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAA
* * * * *
5993079 AGAGATCCACTGAAACTTCAAAAGAGATCTGCTATGGCTTTTAGCCGTTCCAATGCCATTTCAGG
130 AGAGATCCACTGAAACTTTAAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGG
* *
5993144 GAGAAAATTTACTGAAACTTCAAGGAGATCTATTGTGGCTTTTAGCCGTTCCAACGCCATTTCAG
195 GAGAAAATTTACTGAAACTTCAAGGAGATCTATTATGGCTTTTAGCCGCTCCAACGCCATTTCAG
* * * * * *
5993209 GGAGAAGAGATCCATTGAAACTTCAAGCAGATGTGCTGTGGCTTTTAGCCGCTCCNGAAATC
260 GAAAAAGAGATCCACTGAAACTTCAAGCAGATCTGCTGTGGCTTTTAGCCACTCC--AAAGC
5993271 CATT-AAACCTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAA-
1 CATTGAAACCTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAAG
** * * * *
5993334 ATTTGCTGAAACTTTAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCTATTTCAGGAAAAA
66 ATTCACTGAAACTTCAAGGAGATCTGATGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAA
5993399 GAGATCCACTGAAACTTTAAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGG
131 GAGATCCACTGAAACTTTAAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGG
* * * *
5993464 AGAAAATTTGCTGAAACTTTAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCTATTTCAGG
196 AGAAAATTTACTGAAACTTCAAGGAGATCTATTATGGCTTTTAGCCGCTCCAACGCCATTTCAGG
* *
5993529 AAAAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGC
261 AAAAAGAGATCCACTGAAACTTCAAGCAGATCTGCTGTGGCTTTTAGCCACTCCAAAGC
*
5993588 CATTTCAGAGAGAATTTGCTGAAACTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCC
1 CA-TT----GA-AA----C-----CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCC
* * *
5993653 ATTTCAGGGAGAAGAGATCCACTGAAACTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAAC
51 ATTTCAGGGAGAA-AGATTCACTGAAACTTCAAGGAGATCTGATGTGGCTTTTAGCCGCTCCAAC
* *** * *
5993718 GCCATTTCA-G--AGAGA-ATTTGCTGAAAC-TTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTC
115 GCCATTTCAGGAAAAAGAGATCCACTGAAACTTTAAAGGAGATCTGCTGTGGCTTTTAGCCGCTC
5993778 CAACGCCATTTCAGGGA
180 CAACGCCATTTCAGGGA
5993795 AAAGAGATTT
Statistics
Matches: 459, Mismatches: 46, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
317 5 0.01
318 2 0.00
319 225 0.49
320 6 0.01
321 51 0.11
323 1 0.00
324 2 0.00
328 1 0.00
330 48 0.10
331 9 0.02
332 4 0.01
333 53 0.12
334 2 0.00
335 50 0.11
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.27
Consensus pattern (319 bp):
CATTGAAACCTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAAG
ATTCACTGAAACTTCAAGGAGATCTGATGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAA
GAGATCCACTGAAACTTTAAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGG
AGAAAATTTACTGAAACTTCAAGGAGATCTATTATGGCTTTTAGCCGCTCCAACGCCATTTCAGG
AAAAAGAGATCCACTGAAACTTCAAGCAGATCTGCTGTGGCTTTTAGCCACTCCAAAGC
Found at i:5993583 original size:68 final size:67
Alignment explanation
Indices: 5993279--5993805 Score: 692
Period size: 68 Copynumber: 7.9 Consensus size: 67
5993269 TCCATTAAAC
*
5993279 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA-AATTTGCTGA
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAATTTGCTGA
5993343 AA
66 AA
* * * * * ***
5993345 CTTTAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGATCCACTG
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGA-ATTTGCTG
5993410 AAA
65 AAA
* *
5993413 CTTTAAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAA-AATTTGCTG
1 C-TTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAATTTGCTG
5993477 AAA
65 AAA
* * * * * ***
5993480 CTTTAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGATCCACTG
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGA-ATTTGCTG
5993545 AAA
65 AAA
* *
5993548 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCA--G-AGAGAATTTGCTGA
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAATTTGCTGA
5993610 AA
66 AA
* * ***
5993612 CTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGATCCACTG
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGA-ATTTGCTG
5993677 AAA
65 AAA
* *
5993680 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCA--G-AGAGAATTTGCTGA
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAATTTGCTGA
5993742 AA
66 AA
*
5993744 CTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAGATTTG
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGA-ATTTG
5993806 TAATTCAGCC
Statistics
Matches: 394, Mismatches: 54, Indels: 24
0.83 0.11 0.05
Matches are distributed among these distances:
64 106 0.27
65 7 0.02
66 98 0.25
67 18 0.05
68 118 0.30
69 47 0.12
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (67 bp):
CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAATTTGCTGA
AA
Found at i:5993685 original size:132 final size:133
Alignment explanation
Indices: 5993279--5993802 Score: 881
Period size: 132 Copynumber: 3.9 Consensus size: 133
5993269 TCCATTAAAC
*
5993279 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAAATTTGCTGAA
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCA-GGAGAAAATTTGCTGAA
* *
5993344 ACTTTAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGATCCACT
65 ACTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACT
5993409 GAAA
130 GAAA
* *
5993413 CTTTAAAGGAGATCTGCTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAAATTTGCTGA
1 C-TTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCA-GGAGAAAATTTGCTGA
* *
5993478 AACTTTAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCTATTTCAGGAAAAAGAGATCCAC
64 AACTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCAC
5993543 TGAAA
129 TGAAA
*
5993548 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCA-GAGAGAATTTGCTGAAA
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAGGAGAAAATTTGCTGAAA
* * *
5993612 CTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAGAAGAGATCCACTG
66 CTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTG
5993677 AAA
131 AAA
*
5993680 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCA-GAGAGAATTTGCTGAAA
1 CTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAGGAGAAAATTTGCTGAAA
* *
5993744 CTTCAAGGAGATCTGTTGTGGCTTTTAGCCGCTCCAACGCCATTTCAGGGAAAAGAGAT
66 CTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGAT
5993803 TTGTAATTCA
Statistics
Matches: 379, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
132 201 0.53
134 45 0.12
135 133 0.35
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (133 bp):
CTTCAAGGAGATCTGCTGTGGCTTTTAGCCACTCCAACGCCATTTCAGGAGAAAATTTGCTGAAA
CTTCAAGGAGATCTGTTATGGCTTTTAGCCGCTCCAACGCCATTTCAGGAAAAAGAGATCCACTG
AAA
Found at i:5994116 original size:66 final size:66
Alignment explanation
Indices: 5994010--5994142 Score: 203
Period size: 66 Copynumber: 2.0 Consensus size: 66
5994000 TCTATGCTTA
* * ** *
5994010 TGTCAAATGATTAGGATGCAATGATTGAAATGAATCAAATGCTCCTAACTAGATATGTTGTGAAT
1 TGTCAAATAATTAGGATACAATGACCGAAATGAATCAAATGCTCCTAACTAGATATGTTATGAAT
5994075 G
66 G
* *
5994076 TGTCAAATAATTAGGATACTATGACCGAAATGAATCAAATGCTCCTAACTAGATGTGTTATGAAT
1 TGTCAAATAATTAGGATACAATGACCGAAATGAATCAAATGCTCCTAACTAGATATGTTATGAAT
5994141 G
66 G
5994142 T
1 T
5994143 AGAAATGTCA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.32
Consensus pattern (66 bp):
TGTCAAATAATTAGGATACAATGACCGAAATGAATCAAATGCTCCTAACTAGATATGTTATGAAT
G
Found at i:5999531 original size:44 final size:44
Alignment explanation
Indices: 5999474--5999576 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
5999464 TATTCATTGC
* * * *
5999474 AACTTCATAGAGATAGGATTAGTAGCTTCAATCTGCTCCGCTGT
1 AACTTCAGAGAGATACGATTAGTAGCTTCAATCTGCTCCACTAT
* * * *
5999518 AACTTCAGGGAGATACGATTGGTATCTTCAATCTGTTCCACTAT
1 AACTTCAGAGAGATACGATTAGTAGCTTCAATCTGCTCCACTAT
*
5999562 ATCTTCAGAGAGATA
1 AACTTCAGAGAGATA
5999577 ATACTTGTAG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (44 bp):
AACTTCAGAGAGATACGATTAGTAGCTTCAATCTGCTCCACTAT
Found at i:5999979 original size:25 final size:25
Alignment explanation
Indices: 5999951--5999998 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
5999941 GATCTACAAT
*
5999951 CTTCAGCCTGCTCCAC-TGCTACTGG
1 CTTCAACCTGCTCC-CTTGCTACTGG
*
5999976 CTTCAATCTGCTCCCTTGCTACT
1 CTTCAACCTGCTCCCTTGCTACT
5999999 TCAGGAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 19 0.95
ACGTcount: A:0.12, C:0.40, G:0.15, T:0.33
Consensus pattern (25 bp):
CTTCAACCTGCTCCCTTGCTACTGG
Found at i:6000213 original size:44 final size:44
Alignment explanation
Indices: 6000066--6000451 Score: 329
Period size: 44 Copynumber: 8.9 Consensus size: 44
6000056 ATTCGCCGCT
* ** * *
6000066 TTCGATCTGCTCCACTACTTCTTAGGGAGGTAAGATCTACAATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCCATC
* * * * * ** *
6000110 TTC-AGCCTGCTTCACTACTGCTTAGAGAGATAGGA--TGATAGC
1 TTCGA-TCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCCATC
** * *
6000152 TTAAATCTGCCCCACTACTGCTTAGGGACACAAGATCTGCCATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCCATC
* * * *
6000196 TTTGATCTGCTCCACTACTGCTTAGAGAGACAATATTTGCCATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCCATC
* * * *
6000240 TTCGATCTGGTCCACTACTACTTAGAGAGACAAGATTTGCCATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCCATC
***
6000284 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCCATC
* * * * *
6000328 TTCAACCTACTCCACTACTGCTTAGGGAGATAGGA--TG--ATGGC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCCAT--C
** * *
6000370 TTAAATCTGCTCCATTACTGCTTAGGAAGACAAGATCTGCCATC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCCATC
* *
6000414 TTCGATCTGCTTCACTACAT-CTTAGAGAGACAAGATCT
1 TTCGATCTGCTCCACTAC-TGCTTAGGGAGACAAGATCT
6000452 ACAATCTTTA
Statistics
Matches: 273, Mismatches: 58, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
40 2 0.01
42 58 0.21
43 2 0.01
44 208 0.76
45 1 0.00
46 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCCATC
Found at i:6000302 original size:174 final size:173
Alignment explanation
Indices: 6000066--6000490 Score: 457
Period size: 174 Copynumber: 2.4 Consensus size: 173
6000056 ATTCGCCGCT
* * ** *
6000066 TTCGATCTGCTCCACTACTTCTTAGGGAGGTAAGATCTACAATCTTCAGCCTGCTTCACTACTGC
1 TTCGATCTGCTCCACTACTACTTAGAGAGACAAGATCTACAATCTTCAGCCTGCTCCACTACTGC
* * * *
6000131 TTAGAGAGATAGGAT-GAT-AGCTTAAATCTGCCCCACTACTGCTTAGGGACACAAGATCTGCCA
66 TTAGAGAGACAAGATCGATAAGCTTAAACCTACCCCACTACTGCTTAGGGACACAAGA--TG--A
** * *
6000194 T-CTTTGATCTGCTCCACTACTGCTTA-GAGAGACAATATTTGCCATC
127 TGCTTAAATCTGCTCCACTACTGCTTAGGA-AGACAAGATCTGCCATC
* * * * *
6000240 TTCGATCTGGTCCACTACTACTTAGAGAGACAAGATTTGCCATCTTC-GATCTGCTCCACTACTG
1 TTCGATCTGCTCCACTACTACTTAGAGAGACAAGATCTACAATCTTCAG-CCTGCTCCACTACTG
* * * * * * * *
6000304 CTTAGGGAGACAAGATCTATAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGATGATGG
65 CTTAGAGAGACAAGATCGATAAGCTTAAACCTACCCCACTACTGCTTAGGGACACAAGATGAT-G
*
6000369 CTTAAATCTGCTCCATTACTGCTTAGGAAGACAAGATCTGCCATC
129 CTTAAATCTGCTCCACTACTGCTTAGGAAGACAAGATCTGCCATC
* * *
6000414 TTCGATCTGCTTCACTAC-ATCTTAGAGAGACAAGATCTACAATCTTTAGCCTGCTCCACTGCTG
1 TTCGATCTGCTCCACTACTA-CTTAGAGAGACAAGATCTACAATCTTCAGCCTGCTCCACTACTG
*
6000478 CTCAGAGAGACAA
65 CTTAGAGAGACAA
6000491 AGCTAGTGGC
Statistics
Matches: 206, Mismatches: 37, Indels: 16
0.80 0.14 0.06
Matches are distributed among these distances:
172 2 0.01
173 2 0.01
174 167 0.81
175 5 0.02
176 30 0.15
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (173 bp):
TTCGATCTGCTCCACTACTACTTAGAGAGACAAGATCTACAATCTTCAGCCTGCTCCACTACTGC
TTAGAGAGACAAGATCGATAAGCTTAAACCTACCCCACTACTGCTTAGGGACACAAGATGATGCT
TAAATCTGCTCCACTACTGCTTAGGAAGACAAGATCTGCCATC
Found at i:6000487 original size:218 final size:218
Alignment explanation
Indices: 6000066--6000490 Score: 593
Period size: 218 Copynumber: 1.9 Consensus size: 218
6000056 ATTCGCCGCT
* ** * * *
6000066 TTCGATCTGCTCCACTACTTCTTAGGGAGGTAAGATCTACAATCTTCAGCCTGCTTCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACCTACTCCACTACTGC
*
6000131 TTAGAGAGATAGGATGATAGCTTAAATCTGCCCCACTACTGCTTAGGGACACAAGATCTGCCATC
66 TTAGAGAGATAGGATGATAGCTTAAATCTGCCCCACTACTGCTTAGGAACACAAGATCTGCCATC
* * * * * * * *
6000196 TTTGATCTGCTCCACTACTGCTTAGAGAGACAATATTTGCCATCTTCGATCTGGTCCACTACTAC
131 TTCGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTACAATCTTAGACCTGCTCCACTACTAC
*
6000261 TTAGAGAGACAAGATTTGCCATC
196 TCAGAGAGACAAGATTTGCCATC
*
6000284 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAACCTACTCCACTACTGC
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACCTACTCCACTACTGC
* * * * *
6000349 TTAGGGAGATAGGATGATGGCTTAAATCTGCTCCATTACTGCTTAGGAAGACAAGATCTGCCATC
66 TTAGAGAGATAGGATGATAGCTTAAATCTGCCCCACTACTGCTTAGGAACACAAGATCTGCCATC
* *
6000414 TTCGATCTGCTTCACTACAT-CTTAGAGAGACAAGATCTACAATCTTTAG-CCTGCTCCACTGCT
131 TTCGATCTGCTCCACTAC-TGCTTAGAGAGACAAGATCTACAATC-TTAGACCTGCTCCACTACT
*
6000477 GCTCAGAGAGACAA
194 ACTCAGAGAGACAA
6000491 AGCTAGTGGC
Statistics
Matches: 180, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
218 176 0.98
219 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (218 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTACAATCTTCAACCTACTCCACTACTGC
TTAGAGAGATAGGATGATAGCTTAAATCTGCCCCACTACTGCTTAGGAACACAAGATCTGCCATC
TTCGATCTGCTCCACTACTGCTTAGAGAGACAAGATCTACAATCTTAGACCTGCTCCACTACTAC
TCAGAGAGACAAGATTTGCCATC
Found at i:6000528 original size:218 final size:216
Alignment explanation
Indices: 6000070--6000537 Score: 541
Period size: 218 Copynumber: 2.1 Consensus size: 216
6000060 GCCGCTTTCG
* * * * *
6000070 ATCTGCTCCACTACTTCTTAGGGAGGTAAGATCTACAATCTTCAGCCTGCTTCACTACTGCTTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTTAG
* *
6000135 AGAGATAGGATGATAGCTTAAATCTGCCCCACTACTGCTTAGGGACACAAGATCTGCCATCTTTG
66 AGAGATAGGATGATAGCTTAAATCTGCCCCACTACTGCTTAGGAACACAAGATCTGCCATCTTCG
* * * * * * * *
6000200 ATCTGCTCCACTACTGCTTAGAGAGACAATATTTGCCATCTTCGATCTGGTCCACTACTACTTAG
131 ATCTGCTCCACTACTGCTTAGAGAGACAAGATCTACAATCTTAGACCTGCTCCACTACTACTCAG
**
6000265 AGAGACAAGATTTGCCATCTTCG
196 AGAGACAAGA--TGCCATCTTAA
* * *
6000288 ATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATAATCTTCAACCTACTCCACTACTGCTTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTTAG
* * * * *
6000353 GGAGATAGGATGATGGCTTAAATCTGCTCCATTACTGCTTAGGAAGACAAGATCTGCCATCTTCG
66 AGAGATAGGATGATAGCTTAAATCTGCCCCACTACTGCTTAGGAACACAAGATCTGCCATCTTCG
* * *
6000418 ATCTGCTTCACTACAT-CTTAGAGAGACAAGATCTACAATCTTTAG-CCTGCTCCACTGCTGCTC
131 ATCTGCTCCACTAC-TGCTTAGAGAGACAAGATCTACAATC-TTAGACCTGCTCCACTACTACTC
*
6000481 AGAGAGACAA-A-GCTAGTGGCTTAA
194 AGAGAGACAAGATGCCA-T--CTTAA
* *
6000505 ATTTGCTCC-CTTGCTACCTTAGGGAGATAAGAT
1 ATCTGCTCCAC-TACT-CCTTAGGGAGATAAGAT
6000538 TCGCCGCTTT
Statistics
Matches: 211, Mismatches: 32, Indels: 14
0.82 0.12 0.05
Matches are distributed among these distances:
214 3 0.01
215 1 0.00
216 1 0.00
217 15 0.07
218 187 0.89
219 4 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (216 bp):
ATCTGCTCCACTACTCCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCCACTACTGCTTAG
AGAGATAGGATGATAGCTTAAATCTGCCCCACTACTGCTTAGGAACACAAGATCTGCCATCTTCG
ATCTGCTCCACTACTGCTTAGAGAGACAAGATCTACAATCTTAGACCTGCTCCACTACTACTCAG
AGAGACAAGATGCCATCTTAA
Found at i:6000628 original size:132 final size:132
Alignment explanation
Indices: 6000260--6000818 Score: 551
Period size: 132 Copynumber: 4.2 Consensus size: 132
6000250 TCCACTACTA
* * * * * *
6000260 CTTAGAGAGACAAGATTTGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTATA
1 CTTAGGGAGATAAGATTCGCCCTCTTCGATCTGCTTCACTATTGCTTAGGGAGACAAGATCTATA
* * * * * * *
6000325 ATCTTCAACCTACTCCACTACTGCTTAGGGAGA-TAGGAT-GATGGCTTAAATCTGCTCCATTAC
66 ATCTTCAGCCTACTCCACTACTGCTCAGGGAGACAAGGCTAG-TGGCTTAAATCTACTCCCTTGC
*
6000388 T-G
130 TAC
* * * * *
6000390 CTTAGGAAGACAAGA-TCTGCCATCTTCGATCTGCTTCACTACAT-CTTAGAGAGACAAGATCTA
1 CTTAGGGAGATAAGATTC-GCCCTCTTCGATCTGCTTCACTA-TTGCTTAGGGAGACAAGATCTA
* * * * * * * *
6000453 CAATCTTTAGCCTGCTCCACTGCTGCTCAGAGAGACAAAGCTAGTGGCTTAAATTTGCTCCCTTG
64 TAATCTTCAGCCTACTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTACTCCCTTG
6000518 CTAC
129 CTAC
*
6000522 CTTAGGGAGATAAGATTCGCCGCT-TTCGATCTG-TTCCACTATTGCTTAGGGAGATAAGATCTA
1 CTTAGGGAGATAAGATTCGCC-CTCTTCGATCTGCTT-CACTATTGCTTAGGGAGACAAGATCTA
* * * *
6000585 AAATCTTCAGCCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGTAGCTTAAATTTACTCCCTTG
64 TAATCTTCAGCCTACTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTACTCCCTTG
6000650 CTAC
129 CTAC
* * * * ** * * * *
6000654 CTCAGGGAGATAAGATTC-CCCTTCATCGATCTGCTTCATTGCTACCTCATGGAGATAAGATCTG
1 CTTAGGGAGATAAGATTCGCCC-TCTTCGATCTGCTTCACT-ATTGCTTAGGGAGACAAGATCTA
* * *
6000718 TAATCTTCAGCCTACTCTACTACTACTCAGGGAGACAAGGCTAGTGACTTAAATCTACTCCCTTG
64 TAATCTTCAGCCTACTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTACTCCCTTG
6000783 CTA-
129 CTAC
** *
6000786 CTTCAAAGAGATAAGATTCGCCGTCTTCGATCT
1 CTT-AGGGAGATAAGATTCGCCCTCTTCGATCT
6000819 ACTCCATTGC
Statistics
Matches: 360, Mismatches: 54, Indels: 27
0.82 0.12 0.06
Matches are distributed among these distances:
129 1 0.00
130 82 0.23
131 30 0.08
132 140 0.39
133 105 0.29
134 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (132 bp):
CTTAGGGAGATAAGATTCGCCCTCTTCGATCTGCTTCACTATTGCTTAGGGAGACAAGATCTATA
ATCTTCAGCCTACTCCACTACTGCTCAGGGAGACAAGGCTAGTGGCTTAAATCTACTCCCTTGCT
AC
Found at i:6000851 original size:133 final size:133
Alignment explanation
Indices: 6000257--6000849 Score: 528
Period size: 133 Copynumber: 4.5 Consensus size: 133
6000247 TGGTCCACTA
* * * * * * * * * *
6000257 CTACTT-AGAGAGACAAGATTTGCCATCTTCGATCTGCTCCACTACT-GCTTAGGGAGACAAGAT
1 CTACTTCAGGGAGATAAGATTCGCCGTCTTCGATCTGCTCCATTGCTACCTCATGGAGATAAGAT
* * * * * * * *
6000320 CTATAATCTTCAACCTACTCCACTACTGCTTAGGGAGA-TAGGAT-GATGGCTTAAATCTGCTCC
66 CTATAATCTTCAGCCTACTCCACTGCTGCTCAGGGAGACAAGGCTAG-TGACTTAAATTTACTCC
* *
6000383 ATTA
130 CTTG
* * * * * * * *
6000387 CTGCTT-AGGAAGACAAGA-TCTGCCATCTTCGATCTGCTTCA---CTACATCTTAGAGAGACAA
1 CTACTTCAGGGAGATAAGATTC-GCCGTCTTCGATCTGCTCCATTGCTACCTCAT-G-GAGATAA
* * * * * * *
6000447 GATCTACAATCTTTAGCCTGCTCCACTGCTGCTCAGAGAGACAAAGCTAGTGGCTTAAATTTGCT
63 GATCTATAATCTTCAGCCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGTGACTTAAATTTACT
6000512 CCCTTG
128 CCCTTG
* * * ** * *
6000518 CTACCTT-AGGGAGATAAGATTCGCCG-CTTTCGATCTGTTCCACT-ATTGCTTAGGGAGATAAG
1 CTA-CTTCAGGGAGATAAGATTCGCCGTC-TTCGATCTGCTCCATTGCTACCTCATGGAGATAAG
*
6000580 ATCTAAAATCTTCAGCCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGT-AGCTTAAATTTACT
64 ATCTATAATCTTCAGCCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGTGA-CTTAAATTTACT
6000644 CCCTTG
128 CCCTTG
* * * * *
6000650 CTACCTCAGGGAGATAAGATTCCCCTTCATCGATCTGCTTCATTGCTACCTCATGGAGATAAGAT
1 CTACTTCAGGGAGATAAGATTCGCCGTCTTCGATCTGCTCCATTGCTACCTCATGGAGATAAGAT
* * * * *
6000715 CTGTAATCTTCAGCCTACTCTACTACTACTCAGGGAGACAAGGCTAGTGACTTAAATCTACTCCC
66 CTATAATCTTCAGCCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGTGACTTAAATTTACTCCC
6000780 TTG
131 TTG
** *
6000783 CTACTTCAAAGAGATAAGATTCGCCGTCTTCGATCTACTCCATTGCTACCTCATGGAGATAAGAT
1 CTACTTCAGGGAGATAAGATTCGCCGTCTTCGATCTGCTCCATTGCTACCTCATGGAGATAAGAT
6000848 CT
66 CT
6000850 GTGAATTCAT
Statistics
Matches: 377, Mismatches: 70, Indels: 29
0.79 0.15 0.06
Matches are distributed among these distances:
127 2 0.01
128 1 0.00
129 2 0.01
130 75 0.20
131 26 0.07
132 130 0.34
133 138 0.37
134 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (133 bp):
CTACTTCAGGGAGATAAGATTCGCCGTCTTCGATCTGCTCCATTGCTACCTCATGGAGATAAGAT
CTATAATCTTCAGCCTACTCCACTGCTGCTCAGGGAGACAAGGCTAGTGACTTAAATTTACTCCC
TTG
Found at i:6011036 original size:13 final size:13
Alignment explanation
Indices: 6011018--6011044 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
6011008 TGAATGTGAC
6011018 ATATAATATATTT
1 ATATAATATATTT
6011031 ATATAATATATTT
1 ATATAATATATTT
6011044 A
1 A
6011045 GATCCAACTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
ATATAATATATTT
Found at i:6014504 original size:14 final size:14
Alignment explanation
Indices: 6014485--6014534 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
6014475 GAGTTGATTT
* *
6014485 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
6014499 TTGAAAAAACAGAAA
1 TTG-AAAAACAGAAA
*
6014514 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
6014528 TT-AAAAA
1 TTGAAAAA
6014535 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.64, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:6014647 original size:73 final size:74
Alignment explanation
Indices: 6014514--6014757 Score: 303
Period size: 75 Copynumber: 3.3 Consensus size: 74
6014504 AAAACAGAAA
* * ** *
6014514 TTGA-AAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATA
1 TTGACAAA-CAGAAATTGAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATA
*
6014578 TGAGTT-AATTT
63 TGAGTTGATTTT
* *
6014589 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
6014654 GTTGATTTTT
66 GTTGA-TTTT
* * * *
6014664 TTGAAAAACAGAAATTTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGACAAACAGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
6014729 AGTTGATTTT
65 AGTTGATTTT
* *
6014739 TTTACGAACAGAAATTGAA
1 TTGACAAACAGAAATTGAA
6014758 GAACAGAAAT
Statistics
Matches: 147, Mismatches: 18, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
73 34 0.23
74 5 0.03
75 54 0.37
76 54 0.37
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.28
Consensus pattern (74 bp):
TTGACAAACAGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTT
Found at i:6014673 original size:75 final size:75
Alignment explanation
Indices: 6014514--6014754 Score: 308
Period size: 76 Copynumber: 3.2 Consensus size: 75
6014504 AAAACAGAAA
* * ** *
6014514 TTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTAAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATAT
*
6014579 GAGTT-A-ATTT
64 GAGTTGATTTTT
* * * *
6014589 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGA
1 TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
6014654 GTTGATTTTT
66 GTTGATTTTT
* *
6014664 TTGAAAAACAGAAATTTAAAAATACCTCAGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATG
6014729 AGTTGATTTTT
65 AGTTGATTTTT
**
6014740 TT-ACGAACAGAAATT
1 TTGAAAAACAGAAATT
6014755 GAAGAACAGA
Statistics
Matches: 145, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
73 34 0.23
74 3 0.02
75 50 0.34
76 58 0.40
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.29
Consensus pattern (75 bp):
TTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGA
GTTGATTTTT
Found at i:6014763 original size:14 final size:14
Alignment explanation
Indices: 6014744--6014771 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6014734 ATTTTTTTAC
6014744 GAACAGAAATTGAA
1 GAACAGAAATTGAA
6014758 GAACAGAAATTGAA
1 GAACAGAAATTGAA
6014772 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:6014782 original size:239 final size:236
Alignment explanation
Indices: 6014506--6015881 Score: 1475
Period size: 239 Copynumber: 5.7 Consensus size: 236
6014496 AAATTGAAAA
* *
6014506 AACAGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTGAGCCGAGACTCAACTCACCTCT
1 AACAGAAATTGAAAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
6014571 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
65 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
* *
6014636 TCACCTTTCGCAATATGAGTTGATTTTTTTGAAAAACAGAAATTTAAAAATACCTCAGTGTGTCC
130 TCACCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCC
6014701 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG
193 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG
*
6014745 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCT
1 AACAGAAATTGAA-AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
6014810 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGG
65 CGCAATATGAGTTAATTTTTGACAAACAGAAATT--------GAAATT------ACCTCAGC--G
** * * *
6014875 TGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGC
114 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA-T-------
* * * *
6014940 AGAAATTAAAAAGACCTCAGCAGGTGAGCC-GAGACTCAACTCACCTCTCGCAATATGAGTT-AA
171 -----TTAAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
6015003 TTTTTGACA
228 TTTTTTACG
* * * *
6015012 AACAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGGTGAGCCGAGACTCAACTCACCTCT
1 AACAGAAATTGAAA-ACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
6015077 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
65 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
*
6015142 TCACCTCTCG-AATATGAGTTGATTTTTGAAAAACAAAAATTTAAAAATACCTCAGCGTGTCCTG
130 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
*
6015206 AGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTTACG
195 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTTTACG
6015250 AACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
1 AACAGAAATTGAA-AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCT
*
6015315 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAAGCTCAAC
65 CGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAAC
*
6015380 TCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
130 TCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTG
6015445 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT---
195 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG
* * * * * **
6015484 -------TTTGAAAACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAACTCATTTCT
1 AACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGC-CGAGGCTCAACTCACCTCT
* *
6015539 CGCAATATAAGTTGAA-TTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAA
65 CGCAATATGAGTT-AATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
* *
6015602 CTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTGAAAACCAGAAATTGAAAATAC
129 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAA-T------------TTAAAAATAC
* * * *
6015667 CTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGCT-A-ATTTTT---
181 CTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG
* * *
6015720 ----G--A-TG--AACATAAATT-AAAACCACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTC
1 AACAGAAATTGAAAACAGAAATTGAAAA-GACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTC
* * **
6015772 TCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC--GTCTTGAGGCTCAA
64 TCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAA
* * *
6015835 CTCACTTCTCGCAATATGAGCTGA-TTTTGAAAAAGTAGAAA-TTAAAA
129 CTCACCTCTCGCAATATGAGTTGATTTTTGAAAAA-CAGAAATTTAAAA
6015882 GGTTCAACCC
Statistics
Matches: 999, Mismatches: 72, Indels: 152
0.82 0.06 0.12
Matches are distributed among these distances:
219 5 0.01
223 81 0.08
224 39 0.04
225 2 0.00
226 21 0.02
227 5 0.01
232 10 0.01
233 44 0.04
234 56 0.06
235 56 0.06
236 27 0.03
237 23 0.02
238 168 0.17
239 179 0.18
240 2 0.00
247 6 0.01
249 1 0.00
250 26 0.03
251 24 0.02
253 32 0.03
254 1 0.00
255 35 0.04
259 6 0.01
266 15 0.02
267 100 0.10
268 33 0.03
269 2 0.00
ACGTcount: A:0.36, C:0.21, G:0.17, T:0.26
Consensus pattern (236 bp):
AACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTC
GCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACT
CACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGA
GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACG
Found at i:6014854 original size:89 final size:89
Alignment explanation
Indices: 6014706--6015114 Score: 721
Period size: 89 Copynumber: 4.6 Consensus size: 89
6014696 TGTCCTGAGG
* * * * *
6014706 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAACAGAAATTG-AAGAACAGAAATTG
1 CTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGACAAACAGAAATTGAAAG-GCAGAAATTA
* *
6014770 AAAAGACCTCAGCATGTGAGCCGAGG
64 AAAAGACCTCAGCAGGTGAGCCGAGA
*
6014796 CTTAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAA
1 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAA
6014861 AAGACCTCAGCAGGTGAGCCGAGA
66 AAGACCTCAGCAGGTGAGCCGAGA
6014885 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAA
1 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAA
6014950 AAGACCTCAGCAGGTGAGCCGAGA
66 AAGACCTCAGCAGGTGAGCCGAGA
6014974 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAA
1 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAA
6015039 AAGACCTCAGCAGGTGAGCCGAGA
66 AAGACCTCAGCAGGTGAGCCGAGA
6015063 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAA
1 CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAA
6015115 TTACCTCAGC
Statistics
Matches: 309, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
89 280 0.91
90 29 0.09
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.23
Consensus pattern (89 bp):
CTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAA
AAGACCTCAGCAGGTGAGCCGAGA
Found at i:6014971 original size:178 final size:179
Alignment explanation
Indices: 6014706--6015352 Score: 826
Period size: 178 Copynumber: 3.8 Consensus size: 179
6014696 TGTCCTGAGG
* * *
6014706 CTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTACGAACAGAAATTGAAGAACAGAAATTGA
1 CTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGACAAACAGAAATTGAAGAACAGAAATTGA
*
6014771 AAAGACCTCAGCATGTGAGCCGAGGCTTAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAA
66 AAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAA
6014836 CAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGGTGAGCCGAGA
131 CAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGGTGAGCCGAGA
* *
6014885 CTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGACAAACAGAAATTGAA-AGGCAGAAATTA
1 CTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGACAAACAGAAATTGAAGA-ACAGAAATTG
* *
6014948 AAAAGACCTCAGCAGGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAA
65 AAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAA
6015013 ACAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGGTGAGCCGAGA
130 ACAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGGTGAGCCGAGA
6015063 CTCAACTCACCTCTCGCAATATGAGTT-AATTTTTGACAAACAGAAATT--------GAAATT--
1 CTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGACAAACAGAAATTGAAGAACAGAAATTGA
** *
6015117 ----ACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCG-AATATGAGTTGATTTTTG----A
66 AAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAA
* * * * *
6015171 -A-AAA---CAA---A-AATTTAAAAATACCTCAGC--GTG-TCCTGAGG
131 CAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGGTGAGCC-GAGA
* * * *
6015209 CTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAAATT
1 CTCAACTCACCTCTCGCAATATGAGTTGA--ATTTTTGACAAACAGAAATTGAAGAACAGAAATT
6015274 GAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACA
64 GAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACA
6015339 AACAGAAATTGAAA
129 AACAGAAATTGAAA
6015353 TTACCTCAGC
Statistics
Matches: 412, Mismatches: 25, Indels: 66
0.82 0.05 0.13
Matches are distributed among these distances:
145 2 0.00
146 32 0.08
147 1 0.00
148 17 0.04
149 18 0.04
152 2 0.00
155 3 0.01
156 1 0.00
157 7 0.02
161 17 0.04
162 24 0.06
163 8 0.02
164 8 0.02
165 25 0.06
166 17 0.04
170 7 0.02
171 1 0.00
172 3 0.01
175 2 0.00
177 1 0.00
178 189 0.46
179 27 0.07
ACGTcount: A:0.37, C:0.20, G:0.18, T:0.25
Consensus pattern (179 bp):
CTCAACTCACCTCTCGCAATATGAGTTGAATTTTTGACAAACAGAAATTGAAGAACAGAAATTGA
AAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAA
CAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGGTGAGCCGAGA
Found at i:6015176 original size:72 final size:74
Alignment explanation
Indices: 6015034--6015242 Score: 287
Period size: 73 Copynumber: 2.8 Consensus size: 74
6015024 AAGGCAGAAA
* ** * *
6015034 TTAAAAAGACCTCAGCAGGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGA
1 TTAAAAATACCTCAGC--GTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGA
* *
6015099 CAAACAGAAA-
64 AAAACAAAAAT
* *
6015109 TTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG-AATATGAGTTGATTTTTGAAA
1 TTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
6015173 AACAAAAAT
66 AACAAAAAT
* *
6015182 TTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTT
1 TTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
6015243 TTTTACGAAC
Statistics
Matches: 119, Mismatches: 13, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
72 26 0.22
73 63 0.53
74 17 0.14
75 13 0.11
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (74 bp):
TTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAA
AACAAAAAT
Found at i:6015268 original size:14 final size:14
Alignment explanation
Indices: 6015249--6015276 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6015239 TTTTTTTTAC
6015249 GAACAGAAATTGAA
1 GAACAGAAATTGAA
6015263 GAACAGAAATTGAA
1 GAACAGAAATTGAA
6015277 AAGACCTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:6015316 original size:165 final size:163
Alignment explanation
Indices: 6015101--6015407 Score: 463
Period size: 165 Copynumber: 1.9 Consensus size: 163
6015091 ATTTTTGACA
** * *
6015101 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCG-AATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
* * *
6015165 TTTTGAAAAACAAAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATA
66 TTTTGAAAAACAAAAA-TTAAAAATACCTCAGCGTGTCCCGAAGCTCAACTCACCTCTCGCAATA
*
6015230 TGAGTTGATTTTTTTTTACGAACAGAAATTGAAG
130 TGAGTCGATTTTTTTTTACGAACAGAAATTGAAG
*
6015264 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
1 AACAGAAATTGAAAAGACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTA
* * * *
6015329 ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAAGCTCAACTCACCTCTCGCAAT
64 ATTTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTCCCGAAGCTCAACTCACCTCTCGCAAT
6015394 ATGAGTCGATTTTT
129 ATGAGTCGATTTTT
6015408 GAAAAACAGA
Statistics
Matches: 128, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
163 22 0.17
165 80 0.62
166 26 0.20
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (163 bp):
AACAGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTAAT
TTTTGAAAAACAAAAATTAAAAATACCTCAGCGTGTCCCGAAGCTCAACTCACCTCTCGCAATAT
GAGTCGATTTTTTTTTACGAACAGAAATTGAAG
Found at i:6015389 original size:238 final size:236
Alignment explanation
Indices: 6014939--6015649 Score: 994
Period size: 238 Copynumber: 3.1 Consensus size: 236
6014929 AATTGAAAGG
* * *
6014939 CAGAAA-TTAAAAAGACCTCAGCAGGTGAGCC-GAGACTCAACTCACCTCTCGCAATATGAGTT-
1 CAGAAATTTAAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * * * *
6015001 A-ATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGGTGAGCCGAGACT
63 ATTTTTTTTAC-AACAGAAATTGAAA-ACAGAAATTGAAAAGACCTCAGCACGTGAGCCGAGGCT
6015065 CAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTC
126 CAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTC
*
6015130 CCGAGGCTCAACTCACCTCTCG-AATATGAGTTGATTTTTGAAAAA
191 CCGAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAA
* *
6015175 CAAAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGATT
1 CAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-T
*
6015240 TTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCA
65 TTTTTTTAC-AACAGAAATTGAA-AACAGAAATTGAAAAGACCTCAGCACGTGAGCCGAGGCTCA
6015305 ACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCC
128 ACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCC
*
6015370 GAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAA
193 GAGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAA
6015414 CAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
1 CAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
* * *
6015479 TTTTTT----------TTGAAAACAGAAATTGAAAATACCTCA--ACGTG-TCTTGAGGCTCAAC
66 TTTTTTACAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCACGTGAGC-CGAGGCTCAAC
** * *
6015531 TCATTTCTCGCAATATAAGTTGAA-TTTTGA-AAACAGAAATTGAAATTACCTCAGCGTGTCCTG
130 TCACCTCTCGCAATATGAGTT-AATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCG
6015594 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAA
194 AGGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAA
*
6015637 CAGAAATTGAAAA
1 CAGAAATTTAAAA
6015650 CCAGAAATTG
Statistics
Matches: 440, Mismatches: 26, Indels: 31
0.89 0.05 0.06
Matches are distributed among these distances:
223 87 0.20
224 38 0.09
225 2 0.00
226 21 0.05
227 5 0.01
234 2 0.00
235 32 0.07
236 6 0.01
237 15 0.03
238 148 0.34
239 84 0.19
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.27
Consensus pattern (236 bp):
CAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
TTTTTTACAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCACGTGAGCCGAGGCTCAACT
CACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
GCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAA
Found at i:6015596 original size:72 final size:72
Alignment explanation
Indices: 6015258--6015649 Score: 516
Period size: 72 Copynumber: 5.3 Consensus size: 72
6015248 CGAACAGAAA
* *
6015258 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATA
1 TTGAA-AACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
*
6015322 TGAGTTAATTT
62 TGAGTTGATTT
* * *
6015333 TTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAAGCTCAACTCACCTCTCGCAATATGA
1 TTGA-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
*
6015398 GTCGATTT
65 GTTGATTT
*
6015406 TTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
1 TTG-AAAACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
6015471 AGTTGATTTTTTTT
64 AGTTGA-----TTT
* * ** *
6015485 TTGAAAACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
6015550 TTGAATT
66 TTGATTT
*
6015557 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
*
6015622 TCGATTT
66 TTGATTT
6015629 TTGAAAAACAGAAATTGAAAA
1 TTG-AAAACAGAAATTGAAAA
6015650 CCAGAAATTG
Statistics
Matches: 280, Mismatches: 27, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
72 71 0.25
73 64 0.23
74 52 0.19
75 26 0.09
76 1 0.00
77 50 0.18
78 10 0.04
79 6 0.02
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (72 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTT
Found at i:6015648 original size:14 final size:14
Alignment explanation
Indices: 6015629--6015663 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
6015619 GAGTCGATTT
6015629 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
6015643 TTGAAAACCAGAAA
1 TTGAAAAACAGAAA
6015657 TTGAAAA
1 TTGAAAA
6015664 TACCTCAGCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.14, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:6015708 original size:89 final size:87
Alignment explanation
Indices: 6015557--6015740 Score: 241
Period size: 89 Copynumber: 2.1 Consensus size: 87
6015547 AAGTTGAATT
* *
6015557 TTGAAAA-CAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
*
6015621 G-TCGATTTTTGAAAAACAGAAA
66 GCT-AATTTTTGAAAAACAGAAA
*
6015643 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATA
1 TTGAAAACCAGAAATTGAAAATACCTCAGCGTGT---CCTAAGGCTCAACTCACCTCTCGCAATA
** *
6015707 TGAGCTAATTTTTGATGAACATAAA
63 TGAGCTAATTTTTGAAAAACAGAAA
6015732 TT-AAAACCA
1 TTGAAAACCA
6015741 CCTCAGCGTG
Statistics
Matches: 86, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
86 7 0.08
87 25 0.29
88 7 0.08
89 44 0.51
90 3 0.03
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.26
Consensus pattern (87 bp):
TTGAAAACCAGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGA
GCTAATTTTTGAAAAACAGAAA
Found at i:6015773 original size:385 final size:383
Alignment explanation
Indices: 6014753--6015862 Score: 1227
Period size: 385 Copynumber: 2.8 Consensus size: 383
6014743 CGAACAGAAA
* * *
6014753 TTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTTAACTCACCTCTCGCAATA
1 TTGAA-AACAGAAATTGAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATA
* * *
6014817 TGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAG-GTGAGCC
62 TGAGTTGATTTTTGACAAACAGAAATTGAAA-ACAGAAATTGAAAAGACCTCAGC-GTGTGAGCC
*
6014881 GAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAAGGCAGAAAT
125 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT--------G--A-TG-AA--CAGAAAT
* * * *
6014946 TAAAAAGACCTCAGCAGGTGAGCCGAGACTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAC
176 TAAAAACACCTCAGC--GTG-TCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAC
* * *
6015011 AAACAGAAATTGAAAGGCAGAAATTAAAAAGACCTCAGCAGGTGAGCC-GAGACTCAACTCACCT
238 AAACAGAAA-T------------TTAAAAATACCTCAGC--GTG-TCCTGAGGCTCAACTCACCT
* *
6015075 CTCGCAATATGAGTT-A----ATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAG
287 CTCGCAATATGAGTTGATTTTATTTTTGACAAACAGAAATTGAAAATACCTCAACGTGTCCCGAG
* *
6015135 GCTCAACTCACCTCTCGAATATGAGTTGATTT
352 GCTCAACTCACCTCTCGAATATAAGTTGAATT
* * *
6015167 TTGAAAAACAAAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATG
1 TTG-AAAACAGAAA-TTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATG
* * *
6015232 AGTTGATTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCAGCATGTGAGCC
64 AGTTGA---TTTTTGACAAACAGAAATTGAA-AACAGAAATTGAAAAGACCTCAGCGTGTGAGCC
** * **
6015297 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAG
125 GAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGATGAACAGAAATTAAAAACACCTCAG
* * *
6015362 CGTGTCCCGAAGCTCAACTCACCTCTCGCAATATGAGTCGATTTTTGAAAAACAGAAATTTAAAA
190 CGTGT-CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTTAAAA
*
6015427 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTGA-AA
254 ATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTATTTTTGACAA
** **
6015491 ACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAAT
319 ACAGAAATTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCG-AATATAAGTTGAAT
6015556 T
383 T
*
6015557 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
6015622 TCGATTTTTGAAAAACAGAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGCCAAGGC
66 TTGATTTTTGACAAACAGAAATTGAAAA-CAGAAATTGAAAAGACCTCAGCGTGTGAGCCGAGGC
* * * *
6015687 TCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGT
130 TCAACTCACCTCTCGCAATATGAGTTAATTTTTGATGAACAGAAATTAAAAACACCTCAGCGTGT
* * *
6015752 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACA-AAAATTGAAATTACC
195 CC-GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTTAAAAATACC
* * *
6015816 TCAGC--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAGCTGATTTT
259 TCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
6015863 GAAAAAGTAG
Statistics
Matches: 614, Mismatches: 64, Indels: 68
0.82 0.09 0.09
Matches are distributed among these distances:
382 39 0.06
384 23 0.04
385 185 0.30
386 1 0.00
387 15 0.02
388 52 0.08
389 55 0.09
390 23 0.04
399 1 0.00
400 50 0.08
402 19 0.03
404 2 0.00
406 1 0.00
408 1 0.00
412 2 0.00
413 33 0.05
414 10 0.02
415 16 0.03
416 85 0.14
417 1 0.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.26
Consensus pattern (383 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTGACAAACAGAAATTGAAAACAGAAATTGAAAAGACCTCAGCGTGTGAGCCGAGGCT
CAACTCACCTCTCGCAATATGAGTTAATTTTTGATGAACAGAAATTAAAAACACCTCAGCGTGTC
CGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTTAAAAATACCTC
AGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTATTTTTGACAAACAGAAA
TTGAAAATACCTCAACGTGTCCCGAGGCTCAACTCACCTCTCGAATATAAGTTGAATT
Found at i:6015860 original size:71 final size:72
Alignment explanation
Indices: 6015683--6015862 Score: 245
Period size: 73 Copynumber: 2.5 Consensus size: 72
6015673 GTGTGAGCCA
* * ** *
6015683 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGACAAACAAAAATTAAAACCACCTCAGC
6015748 GTGTCCTG
66 G-GTCCTG
* * **
6015756 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGACAAACAAAAATTAAAACCACCTCAGC
*
6015821 -GTCTTG
66 GGTCCTG
*
6015827 AGGCTCAACTCACTTCTCGCAATATGAGCTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTT
6015863 GAAAAAGTAG
Statistics
Matches: 95, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
71 39 0.41
73 56 0.59
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (72 bp):
AGGCTCAACTCACCTCTCGCAATATGAGCTGATTTTTGACAAACAAAAATTAAAACCACCTCAGC
GGTCCTG
Found at i:6015953 original size:53 final size:54
Alignment explanation
Indices: 6015827--6015962 Score: 179
Period size: 54 Copynumber: 2.5 Consensus size: 54
6015817 CAGCGTCTTG
* * * * *
6015827 AGGCTCAACTCACTTCTCGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAA
1 AGGCTTAACTCCCTTCTCGCAATATGAGTTGATTTTGAAAAAGCAAAAATTAAA
6015881 AGG-TTCAAC-CCACTTCTCGCAATATGAGTTGATTTTGAAAAA-CAAAAATTAAA
1 AGGCTT-AACTCC-CTTCTCGCAATATGAGTTGATTTTGAAAAAGCAAAAATTAAA
*
6015934 AGGCTTAACTCCCCTCTCGCAATATGAGT
1 AGGCTTAACTCCCTTCTCGCAATATGAGT
6015963 CAATTTAAAA
Statistics
Matches: 72, Mismatches: 6, Indels: 9
0.83 0.07 0.10
Matches are distributed among these distances:
53 33 0.46
54 39 0.54
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (54 bp):
AGGCTTAACTCCCTTCTCGCAATATGAGTTGATTTTGAAAAAGCAAAAATTAAA
Found at i:6016022 original size:69 final size:69
Alignment explanation
Indices: 6015934--6016169 Score: 454
Period size: 69 Copynumber: 3.4 Consensus size: 69
6015924 AAAAATTAAA
* *
6015934 AGGCTTAACTCCCCTCTCGCAATATGAGTCAATTTAAAACATAAACGAAAAATACCTCGGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACGAAAAATACCTCGGCGTGC
6015999 CCCG
66 CCCG
6016003 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACGAAAAATACCTCGGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACGAAAAATACCTCGGCGTGC
6016068 CCCG
66 CCCG
6016072 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACGAAAAATACCTCGGCGTGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACGAAAAATACCTCGGCGTGC
6016137 CCCG
66 CCCG
6016141 AGGCTCAACTCACCTCTCGCAATATGAGT
1 AGGCTCAACTCACCTCTCGCAATATGAGT
6016170 TGATTTTGAA
Statistics
Matches: 165, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 165 1.00
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.21
Consensus pattern (69 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACGAAAAATACCTCGGCGTGC
CCCG
Found at i:6016221 original size:53 final size:54
Alignment explanation
Indices: 6016141--6016244 Score: 183
Period size: 53 Copynumber: 1.9 Consensus size: 54
6016131 GCGTGCCCCG
6016141 AGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAA
* *
6016194 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATT
6016245 GAAATTACCT
Statistics
Matches: 48, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 31 0.65
54 17 0.35
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (54 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAA
Found at i:6016293 original size:126 final size:121
Alignment explanation
Indices: 6016072--6016441 Score: 562
Period size: 126 Copynumber: 3.0 Consensus size: 121
6016062 GCGTGCCCCG
* *
6016072 AGGCTCAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACGAAAAATACCTCGGCGTGC
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAATG-AAAATACCTCGGCGTGC
6016137 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
65 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
* * * * **
6016194 AGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTTAGC
1 AGGCTTAACTCACCTCTCGCAATATGAG-TCA-ATTT-A-AAACATAAA-TGAAAATACCTCGGC
* *
6016259 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
61 GTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
*
6016320 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGC
1 AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAA-TGAAAATACCTCGGCGTGC
*
6016385 CCCGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTG-AAAACAAAAATTAAA
65 CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
6016441 A
1 A
6016442 ATACCTCAAC
Statistics
Matches: 222, Mismatches: 21, Indels: 11
0.87 0.08 0.04
Matches are distributed among these distances:
121 16 0.07
122 88 0.40
123 3 0.01
124 6 0.03
125 3 0.01
126 105 0.47
127 1 0.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (121 bp):
AGGCTTAACTCACCTCTCGCAATATGAGTCAATTTAAAACATAAATGAAAATACCTCGGCGTGCC
CCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAA
Found at i:6016468 original size:71 final size:70
Alignment explanation
Indices: 6016326--6016494 Score: 207
Period size: 71 Copynumber: 2.4 Consensus size: 70
6016316 TAAAAGGCTT
* * * * **
6016326 AACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGA
1 AACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTGCCCCGA
*
6016390 GGCTC
66 GGATC
* * **
6016395 AACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGTGTCTTG
1 AACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGTGCCCCG
6016460 AGGATC
65 AGGATC
6016466 AACTCA-TCTCTCGCAATATGAGTTGATTT
1 AACTCACT-TCTCGCAATATGAGTTGATTT
6016495 CCCTTGAAAA
Statistics
Matches: 86, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
69 21 0.24
70 6 0.07
71 59 0.69
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTGCCCCGA
GGATC
Found at i:6017330 original size:45 final size:40
Alignment explanation
Indices: 6017281--6017378 Score: 106
Period size: 40 Copynumber: 2.3 Consensus size: 40
6017271 GGACGCCCTC
6017281 TCGGGTTTTCATCCTAATCTTTTTGTACTAATCAAGATGCCCTTT
1 TCGGGTTTTCATCCTAATCTTTTT-T--T--TCAAGATGCCCTTT
** * * *
6017326 TCGGGTTTTCGCCCTGATCTTTTTTTTTAGGATGCCCTTT
1 TCGGGTTTTCATCCTAATCTTTTTTTTCAAGATGCCCTTT
6017366 TCGGGTTTTCATC
1 TCGGGTTTTCATC
6017379 TTAAGCATAA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
40 23 0.50
42 1 0.02
44 1 0.02
45 21 0.46
ACGTcount: A:0.13, C:0.22, G:0.17, T:0.47
Consensus pattern (40 bp):
TCGGGTTTTCATCCTAATCTTTTTTTTCAAGATGCCCTTT
Found at i:6024774 original size:12 final size:12
Alignment explanation
Indices: 6024754--6024789 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
6024744 TGGGATATGC
*
6024754 AATGTATGAATG
1 AATGCATGAATG
6024766 AATGCATGAATG
1 AATGCATGAATG
6024778 AATGCATGAATG
1 AATGCATGAATG
6024790 TCAAAATGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.25, T:0.28
Consensus pattern (12 bp):
AATGCATGAATG
Found at i:6026634 original size:30 final size:30
Alignment explanation
Indices: 6026598--6026668 Score: 133
Period size: 30 Copynumber: 2.4 Consensus size: 30
6026588 NNNNNNNAAA
6026598 GAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
*
6026628 GTGTGGCTAGTGGAGTTGGTGGTGGAAAAG
1 GAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
6026658 GAGTGGCTAGT
1 GAGTGGCTAGT
6026669 TGAGAAAAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.21, C:0.04, G:0.49, T:0.25
Consensus pattern (30 bp):
GAGTGGCTAGTGGAGTTGGTGGTGGAAAAG
Found at i:6034223 original size:454 final size:452
Alignment explanation
Indices: 6033330--6035604 Score: 3393
Period size: 454 Copynumber: 5.0 Consensus size: 452
6033320 ATCACCTCTA
* * *
6033330 TCTATAAGTTTGAAATGAACTTTAAATTTTTACTTGGT----AAAAAAATGAATTGAAGCTTTCT
1 TCTATAAGTTTAAAATGAACTTTAAAATTTTACTTGGTAAAAAAAAAAAAGAATTGAAGCTTTCT
* * *
6033391 TACCAAACAAAGCAGATATTGCAGTTGGAGAAAGACAAAAAATTAAAATAATATTAAACTGCTTT
66 TACCAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACTGCTTT
* * * * * *
6033456 CTGTTTACCTTCAAACAAGTTGATGTCGAGATATAGAGTCTTAAGCATTGTCAAGTTTCCTATTT
131 CGGTTTACCTTCAAACAGGTTGTTGTCAAGATATAGATTCCTAAGCATTGTCAAGTTTCCTATTT
* * * * *
6033521 CTTTTGGTAGAATCCCTTCCAACCTATTA-GAACTGAAGCATATGTCCTCTAACTCTTTGCACTT
196 CTTTTGGTAGAATCCCTTCCAACCTATTATCAGC-CAAGGATATGTACTCTAACTCTTTGCACTT
* * *
6033585 GAATAAACCTAATGGAATTTTACCGGAAAGCTTGTTCCCTTTCAAGTAAAGCTGTTGCAATCTAG
260 GAATAAACCCAATGGAATTTTACCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAATCTAG
* * * *
6033650 GTAGATGATCAAACATATTGGATGGTATCTCACCTGCAAGATTGTTATAACTCAAAAACAAGTAT
325 GTAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACAAGTAT
* * **
6033715 TGAAGTTTAGGGAAGGAATCAAACCATGATGGGCTTTCTCCGTAGAAATTGTTCCAAAACAAG
390 TGAAGTTTAGGGAAGGAATCAAACCATGATGAGATTTCTCTATAGAAATTGTTCCAAAACAAG
6033778 TCTATAAGTTTAAAATGAACTTTAAAATTTTACTTGGTAAAAAATTAAAAAAGAATTGAAGCTTT
1 TCTATAAGTTTAAAATGAACTTTAAAATTTTACTTGGTAAAAAA--AAAAAAGAATTGAAGCTTT
* * * *
6033843 CGTACCAAACAAAGCAGATATTGCAGTTAGAGAAAGACAACAAATTAAAATAACATCCAACTGGT
64 CTTACCAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACTGCT
** * * *
6033908 TTCCATTTACCTTCGAACAGGTTGTTGTCAAGATATAGACTCCTAAGCATTTTCAAGTTTCCTAT
129 TTCGGTTTACCTTCAAACAGGTTGTTGTCAAGATATAGATTCCTAAGCATTGTCAAGTTTCCTAT
* *
6033973 TTCTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGAACGCTAACTCTTTGCACT
194 TTCTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGTACTCTAACTCTTTGCACT
* * *
6034038 TGAATAAACCCAATGGAATTTTACTGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAGTCCA
259 TGAATAAACCCAATGGAATTTTACCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAATCTA
* *
6034103 GGTAGATGATCAAACATATTGGATGGGATCTCTCCTGCAAGATTGTTAGAGCTTAAAGACAAGTA
324 GGTAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACAAGTA
6034168 TTGAAGTTTAGGGAAGGAATCAAACCATGATGAGATTTCTCTATAGAAATTGTTCCAAAACAAG
389 TTGAAGTTTAGGGAAGGAATCAAACCATGATGAGATTTCTCTATAGAAATTGTTCCAAAACAAG
* *
6034232 --TGTAAGTTTAAAATGAAATTTAAAATTTTACTTGGTAAAAAAAAAAGAGATAAGAATTGAAGC
1 TCTATAAGTTTAAAATGAACTTTAAAATTTTACTTGGT--AAAAAAAA-A-A-AAGAATTGAAGC
*
6034295 TTTCTTACGAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACT
61 TTTCTTACCAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACT
* * *
6034360 ACTTTTGGTTTACCTTCGAACAGGTTGTTGT-AGAGATATAGATTCCTAAGCATTGTCAAGTTTC
126 GCTTTCGGTTTACCTTCAAACAGGTTGTTGTCA-AGATATAGATTCCTAAGCATTGTCAAGTTTC
* *
6034424 CTATTTCTTTTGGTAGAATCCCTTCGAACCTATTATCAGCCAAGGATATGTATTCTAACTCTTTG
190 CTATTTCTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGTACTCTAACTCTTTG
* * ** * *
6034489 CACTTGAATAAACCTAATGGAATTTTGCCAAAGAGCTTGTTCCCTTCTAAGTAAAGCTCTTGCAA
255 CACTTGAATAAACCCAATGGAATTTTACCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAA
*
6034554 TCTAGGTAGACGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACA
320 TCTAGGTAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACA
* *
6034619 AGTATTGAAGTTTAGGGAAGGAATCAAATCATGATG-GAATTCCTCTATAGAAATTGTTCCAAAA
385 AGTATTGAAGTTTAGGGAAGGAATCAAACCATGATGAG-ATTTCTCTATAGAAATTGTTCCAAAA
*
6034683 CAAC
449 CAAG
*
6034687 TCTATAAGTTTAAAATGAAATTTAAAATTTTACTTGGTAAAAAAAAGATAAA-AATTGAAGCTTT
1 TCTATAAGTTTAAAATGAACTTTAAAATTTTACTTGGTAAAAAAAA-A-AAAGAATTGAAGCTTT
* * * *
6034751 CTTACCAAACAAAGTAGATATTGCCGTTGGAGAAAGAAAACAAATTAAAATAACATTCAACTACT
64 CTTACCAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACTGCT
* **
6034816 TTCGGTTTACCTTCAAACAGGTTGTTGT-AGAGATATAGTTTTGTAAGCATTGTCAAGTTTCCTA
129 TTCGGTTTACCTTCAAACAGGTTGTTGTCA-AGATATAGATTCCTAAGCATTGTCAAGTTTCCTA
* * **
6034880 TTTCTTTTGGTAGAATCCCTCCCAACCTATTATCAGCCAAGGATATGAAAACTAACTCTTTGCAC
193 TTTCTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGTACTCTAACTCTTTGCAC
**
6034945 TTGAATAAACCCAATGGAATTTTTTCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAATCT
258 TTGAATAAACCCAATGGAATTTTACCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAATCT
* * *
6035010 AGGTAGATGATCAAACATGTTGGATGGGATCTCACCTACAAGATTGTTAGAGTTCAAAGACAAGT
323 AGGTAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACAAGT
* * * *
6035075 ATTGAAGTTTAGGGAAGGAATCAAACCATGACGAAAATTCTCTGTAGAAATTGTTCCAAAACAAG
388 ATTGAAGTTTAGGGAAGGAATCAAACCATGATGAGATTTCTCTATAGAAATTGTTCCAAAACAAG
* * * *
6035140 TCTATAAGTTTAAACTGAACTTTAAAATTTTACTTAGTAAAAAAATTAAAAATAATTAAAGCTTT
1 TCTATAAGTTTAAAATGAACTTTAAAATTTTACTTGGTAAAAAAA--AAAAAGAATTGAAGCTTT
* * * * * * *
6035205 CTTAGCAAATAAATCAAATATTACAGTTGGGGAAAGACAACAAATTAAAATAACATTCAATTGCT
64 CTTACCAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACTGCT
**
6035270 TTCTATTTACCTTCAAACAGGTTGTTGTCAAGATATAGATTCCTAAGCATTGTCAAGTTTCCTAT
129 TTCGGTTTACCTTCAAACAGGTTGTTGTCAAGATATAGATTCCTAAGCATTGTCAAGTTTCCTAT
* *
6035335 TTCTTTTGGTAGAATCCCTTCCAACCTGTTATCAGCCAAGGATATGTATTCTAACTCTTTGCACT
194 TTCTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGTACTCTAACTCTTTGCACT
*
6035400 TGAATAAACCCAATGGAATTTTGCCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAATCTA
259 TGAATAAACCCAATGGAATTTTACCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAATCTA
* *
6035465 GGTAGATGATCAAACATATTGGATGGGATCTCTCCTGCAAGATTGTTAGAGCTCACAGACAAGTA
324 GGTAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACAAGTA
* * * *
6035530 TTGAAGTTTAGGGAAGGAATCAAACCATAATGGGATTTCTCTATATAAATTGTTCAAAAACAAG
389 TTGAAGTTTAGGGAAGGAATCAAACCATGATGAGATTTCTCTATAGAAATTGTTCCAAAACAAG
6035594 TCTATAAGTTT
1 TCTATAAGTTT
6035605 CAATCGAAGC
Statistics
Matches: 1658, Mismatches: 148, Indels: 36
0.90 0.08 0.02
Matches are distributed among these distances:
448 36 0.02
452 38 0.02
453 414 0.25
454 750 0.45
455 385 0.23
457 35 0.02
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (452 bp):
TCTATAAGTTTAAAATGAACTTTAAAATTTTACTTGGTAAAAAAAAAAAAGAATTGAAGCTTTCT
TACCAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACTGCTTT
CGGTTTACCTTCAAACAGGTTGTTGTCAAGATATAGATTCCTAAGCATTGTCAAGTTTCCTATTT
CTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGTACTCTAACTCTTTGCACTTG
AATAAACCCAATGGAATTTTACCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAATCTAGG
TAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACAAGTATT
GAAGTTTAGGGAAGGAATCAAACCATGATGAGATTTCTCTATAGAAATTGTTCCAAAACAAG
Found at i:6035184 original size:909 final size:906
Alignment explanation
Indices: 6033330--6035604 Score: 3465
Period size: 909 Copynumber: 2.5 Consensus size: 906
6033320 ATCACCTCTA
*
6033330 TCTATAAGTTTGAAATGAACTTTAAATTTTTACTTGGT----AAAAAAAT--GAATTGAAGCTTT
1 TCTATAAGTTT-AAATGAACTTTAAAATTTTACTTGGTAAAAAAAAAAATAAGAATTGAAGCTTT
* * * *
6033389 CTTACCAAACAAAGCAGATATTGCAGTTGGAGAAAGACAAAAAATTAAAATAATATTAAACTGCT
65 CTTACGAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACTGCT
* * * * *
6033454 TTCTGTTTACCTTCAAACAAGTTGATGTCGAGATATAGAGTCTTAAGCATTGTCAAGTTTCCTAT
130 TTCTGTTTACCTTCAAACAGGTTGTTGTAGAGATATAGATTCCTAAGCATTGTCAAGTTTCCTAT
* * * * **
6033519 TTCTTTTGGTAGAATCCCTTCCAACCTATTA-GAACTGAAGCATATGTCCTCTAACTCTTTGCAC
195 TTCTTTTGGTAGAATCCCTTCCAACCTATTATCAGC-CAAGGATATGTATTCTAACTCTTTGCAC
*
6033583 TTGAATAAACCTAATGGAATTTTACCGGAA-AGCTTGTTCCCTT-TCAAGTAAAGCTGTTGCAAT
259 TTGAATAAACCTAATGGAATTTTGCC-GAAGAGCTTGTTCCCTTCT-AAGTAAAGCTGTTGCAAT
* * * *
6033646 CTAGGTAGATGATCAAACATATTGGATGGTATCTCACCTGCAAGATTGTTATAACTCAAAAACAA
322 CTAGGTAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACAA
* **
6033711 GTATTGAAGTTTAGGGAAGGAATCAAACCATGATGGGCTTTCTCCGTAGAAATTGTTCCAAAACA
387 GTATTGAAGTTTAGGGAAGGAATCAAACCATGATGGGATTTCTCTATAGAAATTGTTCCAAAACA
*
6033776 AGTCTATAAGTTTAAAATGAACTTTAAAATTTTACTTGGTAAAAAATTAAAAAAGAATTGAAGCT
452 AGTCTATAAGTTTAAAATGAAATTTAAAATTTTACTTGGTAAAAAA-TAAAAAAGAATTGAAGCT
* *
6033841 TTCGTACCAAACAAAGCAGATATTGCAGTTAGAGAAAGACAACAAATTAAAATAACATCCAACTG
516 TTCGTACCAAACAAAGCAGATATTGCAGTTAGAGAAAGAAAACAAATTAAAATAACATCCAACTA
* * *
6033906 GTTTCCATTTACCTTCGAACAGGTTGTTGTCAAGATATAGACTCCTAAGCATTTTCAAGTTTCCT
581 CTTTCCATTTACCTTCAAACAGGTTGTTGTCAAGATATAGACTCCTAAGCATTGTCAAGTTTCCT
* **
6033971 ATTTCTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGAACGCTAACTCTTTGCA
646 ATTTCTTTTGGTAGAATCCCTCCCAACCTATTATCAGCCAAGGATATGAAAACTAACTCTTTGCA
*
6034036 CTTGAATAAACCCAATGGAATTTTACTGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAGTC
711 CTTGAATAAACCCAATGGAATTTTACTGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAATC
* *
6034101 CAGGTAGATGATCAAACATATTGGATGGGATCTCTCCTGCAAGATTGTTAGAGCTTAAAGACAAG
776 CAGGTAGATGATCAAACATATTGGATGGGATCTCACCTACAAGATTGTTAGAGCTTAAAGACAAG
* * *
6034166 TATTGAAGTTTAGGGAAGGAATCAAACCATGATGAGATTTCTCTATAGAAATTGTTCCAAAACAA
841 TATTGAAGTTTAGGGAAGGAATCAAACCATGACGAAAATTCTCTATAGAAATTGTTCCAAAACAA
6034231 G
906 G
* *
6034232 --TGTAAGTTTAAAATGAAATTTAAAATTTTACTTGGTAAAAAAAAAAGAGATAAGAATTGAAGC
1 TCTATAAGTTT-AAATGAACTTTAAAATTTTACTTGGT-AAAAAAAAA-A-ATAAGAATTGAAGC
6034295 TTTCTTACGAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACT
62 TTTCTTACGAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACT
* *
6034360 ACTTT-TGGTTTACCTTCGAACAGGTTGTTGTAGAGATATAGATTCCTAAGCATTGTCAAGTTTC
127 GCTTTCT-GTTTACCTTCAAACAGGTTGTTGTAGAGATATAGATTCCTAAGCATTGTCAAGTTTC
*
6034424 CTATTTCTTTTGGTAGAATCCCTTCGAACCTATTATCAGCCAAGGATATGTATTCTAACTCTTTG
191 CTATTTCTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGTATTCTAACTCTTTG
* *
6034489 CACTTGAATAAACCTAATGGAATTTTGCCAAAGAGCTTGTTCCCTTCTAAGTAAAGCTCTTGCAA
256 CACTTGAATAAACCTAATGGAATTTTGCCGAAGAGCTTGTTCCCTTCTAAGTAAAGCTGTTGCAA
*
6034554 TCTAGGTAGACGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACA
321 TCTAGGTAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACA
* * *
6034619 AGTATTGAAGTTTAGGGAAGGAATCAAATCATGATGGAATTCCTCTATAGAAATTGTTCCAAAAC
386 AGTATTGAAGTTTAGGGAAGGAATCAAACCATGATGGGATTTCTCTATAGAAATTGTTCCAAAAC
*
6034684 AACTCTATAAGTTTAAAATGAAATTTAAAATTTTACTTGGTAAAAAA-AAGATAAA-AATTGAAG
451 AAGTCTATAAGTTTAAAATGAAATTTAAAATTTTACTTGGTAAAAAATAA-A-AAAGAATTGAAG
* * * * *
6034747 CTTTCTTACCAAACAAAGTAGATATTGCCGTTGGAGAAAGAAAACAAATTAAAATAACATTCAAC
514 CTTTCGTACCAAACAAAGCAGATATTGCAGTTAGAGAAAGAAAACAAATTAAAATAACATCCAAC
** ** **
6034812 TACTTTCGGTTTACCTTCAAACAGGTTGTTGT-AGAGATATAGTTTTGTAAGCATTGTCAAGTTT
579 TACTTTCCATTTACCTTCAAACAGGTTGTTGTCA-AGATATAGACTCCTAAGCATTGTCAAGTTT
6034876 CCTATTTCTTTTGGTAGAATCCCTCCCAACCTATTATCAGCCAAGGATATGAAAACTAACTCTTT
643 CCTATTTCTTTTGGTAGAATCCCTCCCAACCTATTATCAGCCAAGGATATGAAAACTAACTCTTT
*
6034941 GCACTTGAATAAACCCAATGGAATTTT-TTCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGC
708 GCACTTGAATAAACCCAATGGAATTTTACT-GGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGC
* *
6035005 AATCTAGGTAGATGATCAAACATGTTGGATGGGATCTCACCTACAAGATTGTTAGAG-TTCAAAG
772 AATCCAGGTAGATGATCAAACATATTGGATGGGATCTCACCTACAAGATTGTTAGAGCTT-AAAG
*
6035069 ACAAGTATTGAAGTTTAGGGAAGGAATCAAACCATGACGAAAATTCTCTGTAGAAATTGTTCCAA
836 ACAAGTATTGAAGTTTAGGGAAGGAATCAAACCATGACGAAAATTCTCTATAGAAATTGTTCCAA
6035134 AACAAG
901 AACAAG
* * * *
6035140 TCTATAAGTTTAAACTGAACTTTAAAATTTTACTTAGTAAAAAAATTAAA-AATAATTAAAGCTT
1 TCTATAAGTTTAAA-TGAACTTTAAAATTTTACTTGGTAAAAAAA-AAAATAAGAATTGAAGCTT
* * * * * *
6035204 TCTTA-GCAAATAAATCAAATATTACAGTTGGGGAAAGACAACAAATTAAAATAACATTCAATTG
64 TCTTACG-AAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACTG
*
6035268 CTTTCTATTTACCTTCAAACAGGTTGTTGTCA-AGATATAGATTCCTAAGCATTGTCAAGTTTCC
128 CTTTCTGTTTACCTTCAAACAGGTTGTTGT-AGAGATATAGATTCCTAAGCATTGTCAAGTTTCC
*
6035332 TATTTCTTTTGGTAGAATCCCTTCCAACCTGTTATCAGCCAAGGATATGTATTCTAACTCTTTGC
192 TATTTCTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGTATTCTAACTCTTTGC
* * *
6035397 ACTTGAATAAACCCAATGGAATTTTGCCGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAAT
257 ACTTGAATAAACCTAATGGAATTTTGCCGAAGAGCTTGTTCCCTTCTAAGTAAAGCTGTTGCAAT
* *
6035462 CTAGGTAGATGATCAAACATATTGGATGGGATCTCTCCTGCAAGATTGTTAGAGCTCACAGACAA
322 CTAGGTAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACAA
* * *
6035527 GTATTGAAGTTTAGGGAAGGAATCAAACCATAATGGGATTTCTCTATATAAATTGTTCAAAAACA
387 GTATTGAAGTTTAGGGAAGGAATCAAACCATGATGGGATTTCTCTATAGAAATTGTTCCAAAACA
6035592 AGTCTATAAGTTT
452 AGTCTATAAGTTT
6035605 CAATCGAAGC
Statistics
Matches: 1249, Mismatches: 99, Indels: 45
0.90 0.07 0.03
Matches are distributed among these distances:
900 32 0.03
905 5 0.00
906 2 0.00
907 389 0.31
908 372 0.30
909 416 0.33
910 33 0.03
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.32
Consensus pattern (906 bp):
TCTATAAGTTTAAATGAACTTTAAAATTTTACTTGGTAAAAAAAAAAATAAGAATTGAAGCTTTC
TTACGAAACAAAGCAGATATTGCAGTTGGAGAAAGACAACAAATTAAAATAACATTCAACTGCTT
TCTGTTTACCTTCAAACAGGTTGTTGTAGAGATATAGATTCCTAAGCATTGTCAAGTTTCCTATT
TCTTTTGGTAGAATCCCTTCCAACCTATTATCAGCCAAGGATATGTATTCTAACTCTTTGCACTT
GAATAAACCTAATGGAATTTTGCCGAAGAGCTTGTTCCCTTCTAAGTAAAGCTGTTGCAATCTAG
GTAGATGATCAAACATATTGGATGGGATCTCACCTGCAAGATTGTTAGAGCTCAAAGACAAGTAT
TGAAGTTTAGGGAAGGAATCAAACCATGATGGGATTTCTCTATAGAAATTGTTCCAAAACAAGTC
TATAAGTTTAAAATGAAATTTAAAATTTTACTTGGTAAAAAATAAAAAAGAATTGAAGCTTTCGT
ACCAAACAAAGCAGATATTGCAGTTAGAGAAAGAAAACAAATTAAAATAACATCCAACTACTTTC
CATTTACCTTCAAACAGGTTGTTGTCAAGATATAGACTCCTAAGCATTGTCAAGTTTCCTATTTC
TTTTGGTAGAATCCCTCCCAACCTATTATCAGCCAAGGATATGAAAACTAACTCTTTGCACTTGA
ATAAACCCAATGGAATTTTACTGGAGAGCTTGTTCCCTTCCAAGTAAAGCTGTTGCAATCCAGGT
AGATGATCAAACATATTGGATGGGATCTCACCTACAAGATTGTTAGAGCTTAAAGACAAGTATTG
AAGTTTAGGGAAGGAATCAAACCATGACGAAAATTCTCTATAGAAATTGTTCCAAAACAAG
Found at i:6041148 original size:12 final size:12
Alignment explanation
Indices: 6041131--6041155 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6041121 ACCGCTGGAG
6041131 CTTTACTTAGGA
1 CTTTACTTAGGA
6041143 CTTTACTTAGGA
1 CTTTACTTAGGA
6041155 C
1 C
6041156 CCTTCTATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.20, G:0.16, T:0.40
Consensus pattern (12 bp):
CTTTACTTAGGA
Found at i:6044076 original size:51 final size:49
Alignment explanation
Indices: 6044010--6044133 Score: 121
Period size: 51 Copynumber: 2.5 Consensus size: 49
6044000 TATTTTTTAC
* *
6044010 TTAATTTAAAATAATTAAGAGATATATAATAAA-ATTTATATTATCACT-G
1 TTAA-TTAAATTAATTAAGAGATA-ATAATAAATAATTATATTATCACTAG
* * *
6044059 ATTAAAATTAAATTAATTAA-ATGATAATATTAAATAATTATCTTATCTCTAG
1 -TT--AATTAAATTAATTAAGA-GATAATAATAAATAATTATATTATCACTAG
6044111 TTAATTAAATTAA-TAAGAGATAA
1 TTAATTAAATTAATTAAGAGATAA
6044134 ATGCTAAATA
Statistics
Matches: 63, Mismatches: 5, Indels: 14
0.77 0.06 0.17
Matches are distributed among these distances:
48 8 0.13
49 12 0.19
50 10 0.16
51 30 0.48
52 3 0.05
ACGTcount: A:0.50, C:0.04, G:0.06, T:0.40
Consensus pattern (49 bp):
TTAATTAAATTAATTAAGAGATAATAATAAATAATTATATTATCACTAG
Found at i:6048563 original size:25 final size:24
Alignment explanation
Indices: 6048535--6048598 Score: 56
Period size: 25 Copynumber: 2.5 Consensus size: 24
6048525 ATCACGAAAC
6048535 ATATAAATAATAATAATATATAAGA
1 ATATAAATAATAATAATATAT-AGA
** * *
6048560 ATATTTATACAAAATATTATATAGA
1 ATATAAATA-ATAATAATATATAGA
6048585 ATATTGAAATAATA
1 ATA-T-AAATAATA
6048599 TGATGCAAAC
Statistics
Matches: 29, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
25 13 0.45
26 13 0.45
27 3 0.10
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.36
Consensus pattern (24 bp):
ATATAAATAATAATAATATATAGA
Found at i:6052765 original size:68 final size:64
Alignment explanation
Indices: 6052655--6052907 Score: 210
Period size: 68 Copynumber: 3.9 Consensus size: 64
6052645 ATACAGATGG
* ** * *
6052655 TATGTAGCTAGGTCACATGTATGGTGCTGA-GTGCACATCATGT-GTACAAGAGAGCTACGAGAC
1 TATGTAGCTAGGTCGCATGGGTGGTACT-ATGTGCACACCATGTAG-ACAAGAGAGCTACGAG--
6052718 ATTA
62 A-TA
* *
6052722 TGATGTAGCTAGGTCGCATGGGTGATACTATGTGCACACCATGTAGACAAGAGAGCTACGGGATA
1 T-ATGTAGCTAGGTCGCATGGGTGGTACTATGTGCACACCATGTAGACAAGAGAGCTACGAGATA
* * * * * *
6052787 TATGTAGCTAGGTCGAATGCGTGGTTCCAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGA
1 TATGTAGCTAGGTCGCATGGGTGGTACTA--TG-TGCACACCATGTAGACAAGAGAGCTACGAGA
6052852 TA
63 TA
* * * **
6052854 AACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 TA-TGTAGCTAGGTCGCATGGGTGGTACTATGTGCACACCATGTAG-ACAAGAGAGC
6052908 CGAACTATAT
Statistics
Matches: 153, Mismatches: 25, Indels: 20
0.77 0.13 0.10
Matches are distributed among these distances:
62 1 0.01
63 19 0.12
64 24 0.16
65 3 0.02
66 21 0.14
67 33 0.22
68 51 0.33
69 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.24
Consensus pattern (64 bp):
TATGTAGCTAGGTCGCATGGGTGGTACTATGTGCACACCATGTAGACAAGAGAGCTACGAGATA
Found at i:6053930 original size:15 final size:16
Alignment explanation
Indices: 6053912--6053941 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6053902 ATGGAAACTA
6053912 TGATAT-ATGAAATAT
1 TGATATAATGAAATAT
6053927 TGATATAATGAAATA
1 TGATATAATGAAATA
6053942 AATGATATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
TGATATAATGAAATAT
Found at i:6056526 original size:21 final size:22
Alignment explanation
Indices: 6056486--6056533 Score: 64
Period size: 21 Copynumber: 2.2 Consensus size: 22
6056476 CACATATATA
*
6056486 TATATATTTGATGTTATATTTT
1 TATATATTTGATGTTATATTAT
6056508 TATATA-TT-ATGTATATATTAT
1 TATATATTTGATGT-TATATTAT
6056529 TATAT
1 TATAT
6056534 CTACTTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 4 0.17
21 14 0.58
22 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.60
Consensus pattern (22 bp):
TATATATTTGATGTTATATTAT
Found at i:6056900 original size:23 final size:24
Alignment explanation
Indices: 6056849--6056893 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
6056839 TTATTTTTAA
6056849 CTTTATATTGTGTATCGTATATGT
1 CTTTATATTGTGTATCGTATATGT
*
6056873 TTTTATATATGT-TAT-GTATAT
1 CTTTATAT-TGTGTATCGTATAT
6056894 AGCTTTAGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 6 0.32
24 10 0.53
25 3 0.16
ACGTcount: A:0.24, C:0.04, G:0.13, T:0.58
Consensus pattern (24 bp):
CTTTATATTGTGTATCGTATATGT
Found at i:6057270 original size:21 final size:21
Alignment explanation
Indices: 6057219--6057276 Score: 53
Period size: 21 Copynumber: 2.8 Consensus size: 21
6057209 ATATATATAC
* * *
6057219 TATTATTATATTTATTTTTAT
1 TATTAATATATTTATTATTAA
** *
6057240 TCCTAGTATATTTATTATTAA
1 TATTAATATATTTATTATTAA
*
6057261 TATTAATATATGTATT
1 TATTAATATATTTATT
6057277 TTTTACATGT
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.60
Consensus pattern (21 bp):
TATTAATATATTTATTATTAA
Found at i:6065061 original size:48 final size:48
Alignment explanation
Indices: 6065007--6065101 Score: 127
Period size: 48 Copynumber: 2.0 Consensus size: 48
6064997 ACTACATCTT
* * *
6065007 ATAATTAAATTAAACGAGTTTTAATTCTATGCCTATATGTTGACATTC
1 ATAATTAAATTAAACAAGTTTTAATTCTATGCATATATGTTCACATTC
** * *
6065055 ATAATTAGGTTAATCAAGTTTTAATTCTATGCATTTATGTTCACATT
1 ATAATTAAATTAAACAAGTTTTAATTCTATGCATATATGTTCACATT
6065102 AGAGATTAAG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.44
Consensus pattern (48 bp):
ATAATTAAATTAAACAAGTTTTAATTCTATGCATATATGTTCACATTC
Found at i:6069538 original size:16 final size:15
Alignment explanation
Indices: 6069517--6069564 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
6069507 GATGTGAATA
6069517 ATAAAATATATAAAAT
1 ATAAAATAT-TAAAAT
6069533 ATAAAATATTAAAAT
1 ATAAAATATTAAAAT
*
6069548 ATCAAAATATTAGAAT
1 AT-AAAATATTAAAAT
6069564 A
1 A
6069565 ATAATAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATATTAAAAT
Found at i:6069540 original size:24 final size:24
Alignment explanation
Indices: 6069513--6069568 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
6069503 TAATGATGTG
*
6069513 AATAATAAAATATATAAAATA-TAA
1 AATAATAAAATAT-CAAAATATTAA
* *
6069537 AATATTAAAATATCAAAATATTAG
1 AATAATAAAATATCAAAATATTAA
6069561 AATAATAA
1 AATAATAA
6069569 TAATTAATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 6 0.22
24 21 0.78
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.30
Consensus pattern (24 bp):
AATAATAAAATATCAAAATATTAA
Found at i:6069547 original size:8 final size:8
Alignment explanation
Indices: 6069513--6069564 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
6069503 TAATGATGTG
*
6069513 AATAATAA
1 AATATTAA
6069521 AATATATAA
1 AATAT-TAA
6069530 AATA-TAA
1 AATATTAA
6069537 AATATTAA
1 AATATTAA
*
6069545 AATATCAA
1 AATATTAA
*
6069553 AATATTAG
1 AATATTAA
6069561 AATA
1 AATA
6069565 ATAATAATTA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 24 0.63
9 7 0.18
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (8 bp):
AATATTAA
Found at i:6070844 original size:77 final size:77
Alignment explanation
Indices: 6070684--6070935 Score: 375
Period size: 77 Copynumber: 3.3 Consensus size: 77
6070674 ATGTAAACCC
* *
6070684 AAGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTGAAAAGCAGAAATTGAAAA-CGCCT
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAG-CT
** * *
6070746 CAGCGTGTGACCC
65 CAGCACGTGAGCA
* *
6070759 GAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTAAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
6070824 AGCACGTGAGCA
66 AGCACGTGAGCA
* *
6070836 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTCTTTTGAAAAGCAGAAATTGAAAATAGCTC
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
6070901 AGCACGTGAGCA
66 AGCACGTGAGCA
*
6070913 AAGGCTCAACTCACTTCTCGCAA
1 AAGGCTCAACTCACCTCTCGCAA
6070936 AAGTAGATTT
Statistics
Matches: 160, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
75 31 0.19
77 128 0.80
78 1 0.01
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.25
Consensus pattern (77 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAAAAGCAGAAATTGAAAATAGCTC
AGCACGTGAGCA
Found at i:6071043 original size:14 final size:14
Alignment explanation
Indices: 6071007--6071057 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
6070997 GAGTTGATTT
* *
6071007 TTGAAAAATATAAA
1 TTGAAAAACAGAAA
6071021 TTGAAAAAAACAGAAA
1 TTG--AAAAACAGAAA
*
6071037 TTGAAAAGCAGAAA
1 TTGAAAAACAGAAA
6071051 TT-AAAAA
1 TTGAAAAA
6071058 GACCTCAGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
16 12 0.39
ACGTcount: A:0.65, C:0.04, G:0.12, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:6071170 original size:73 final size:74
Alignment explanation
Indices: 6071046--6071280 Score: 283
Period size: 75 Copynumber: 3.1 Consensus size: 74
6071036 ATTGAAAAGC
* * * * * * *
6071046 AGAAATTAAAAAGACCTCAGCATGTAAGCCGAGACTCAACTCACCTCTCGCAATATGA-TTTAAT
1 AGAAATTGAAAATACCTCAGCGTGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATT
*
6071110 TTTTGACAAAC
64 TTTTGACAAAT
* *
6071121 AGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTT
*
6071186 TTTGAAAAAT
65 TTTGACAAAT
* * *
6071196 AGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTT
1 AGAAA-TTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT
* *
6071261 TTTTACGAAT
65 TTTGACAAAT
6071271 AGAAATTGAA
1 AGAAATTGAA
6071281 GAACAGAAAT
Statistics
Matches: 137, Mismatches: 20, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
73 28 0.20
74 7 0.05
75 51 0.37
76 51 0.37
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.29
Consensus pattern (74 bp):
AGAAATTGAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TTGACAAAT
Found at i:6071304 original size:239 final size:236
Alignment explanation
Indices: 6071032--6071497 Score: 765
Period size: 239 Copynumber: 2.0 Consensus size: 236
6071022 TGAAAAAAAC
6071032 AGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTAAGCCGAGACTCAACTCACCTCTCGC
1 AGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTAAGCCGAGACTCAACTCACCTCTCGC
*
6071097 AATATGATTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCA
66 AATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCA
* *
6071162 CCTTTCGCAATATGAGTTGATTTTTTTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTGA
131 CCTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAA-TTAAAAATACCTCAGCGTGTCCTGA
6071227 GGCTCAACTCACCTCTCA-CAATATGAGTTGATTTTTTTACGAAT
193 GGCTCAACTCACCTCT-AGCAATATGAGTTGATTTTTTTACGAAT
* * *
6071271 AGAAATTGAAGAA-CAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCG
1 AGAAATTGAA-AAGCAGAAATTAAAAAGACCTCAGCATGTAAGCCGAGACTCAACTCACCTCTCG
* *
6071335 CAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCTTGTCCCGAGGCTCAACTT
65 CAATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTC
* * *
6071400 ACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGG
130 ACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGG
*
6071465 CTTAACTCACCTCTAGCAATATGAGTTGATTTT
195 CTCAACTCACCTCTAGCAATATGAGTTGATTTT
6071498 GAAAAACAAA
Statistics
Matches: 213, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
235 1 0.00
236 55 0.26
237 15 0.07
239 140 0.66
240 2 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (236 bp):
AGAAATTGAAAAGCAGAAATTAAAAAGACCTCAGCATGTAAGCCGAGACTCAACTCACCTCTCGC
AATATGAGTTAATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCA
CCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAATACCTCAGCGTGTCCTGAGGC
TCAACTCACCTCTAGCAATATGAGTTGATTTTTTTACGAAT
Found at i:6071416 original size:163 final size:163
Alignment explanation
Indices: 6071118--6071569 Score: 478
Period size: 145 Copynumber: 2.9 Consensus size: 163
6071108 ATTTTTGACA
** * *
6071118 AACAGAAATTGAAATTACCTCAGCGTGTCCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * *
6071183 TTTTTTGAAAAATAGAAATTTAAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCACAA
66 ATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAA
* * *
6071248 TATGAGTTGATTTTTTTACGAATAGAAATTGAAG
131 TATGAGTTGA-TTTTTGACAAACAGAAATTGAAG
*
6071282 AACAGAAATTGAAAAGACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTCGCAATATGAGTT-
1 AACAGAAATTGAAAAGACCTCAGC--GTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* * * * * *
6071346 A-ATTTTTGACAAACAGAAA-TTGAAATTACCTCAGCTTGTCCCGAGGCTCAACTTACCTCTCGC
64 ATATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCAC
6071409 AATATGAGTTGATTTTTGACAAACAGAAATT----
129 AATATGAGTTGATTTTTGACAAACAGAAATTGAAG
* * * *
6071440 ----GAAATT------ACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTAGCAATATGAGTTG--
1 AACAGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* * * ** * *
6071493 A-TTTTGAAAAACA-AAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAA
66 ATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAA
6071556 TATGAGTTGATTTT
131 TATGAGTTGATTTT
6071570 CCTTGAAAAG
Statistics
Matches: 253, Mismatches: 31, Indels: 27
0.81 0.10 0.09
Matches are distributed among these distances:
144 3 0.01
145 63 0.25
146 34 0.13
148 8 0.03
154 6 0.02
162 16 0.06
163 50 0.20
164 37 0.15
165 1 0.00
166 35 0.14
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (163 bp):
AACAGAAATTGAAAAGACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
ATTTTTGAAAAACAGAAATTTAAAAATACCTCAGCGTGTCCCGAGGCTCAACTCACCTCTCACAA
TATGAGTTGATTTTTGACAAACAGAAATTGAAG
Found at i:6071536 original size:72 final size:73
Alignment explanation
Indices: 6071282--6071569 Score: 391
Period size: 73 Copynumber: 3.9 Consensus size: 73
6071272 GAAATTGAAG
** *
6071282 AACAGAAATTGAAAAGACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AACAGAAATTGAAATTACCTCAGC--GTG-TCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
6071346 AATTTTTGACA
63 GATTTTTGACA
* * *
6071357 AACAGAAATTGAAATTACCTCAGCTTGTCCCGAGGCTCAACTTACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
6071422 TTTTGACA
66 TTTTGACA
* *
6071430 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTTAACTCACCTCTAGCAATATGAGTTGA-
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
*
6071494 TTTTGAAA
66 TTTTGACA
* * * * * *
6071502 AACAAAAATTAAAAGTACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
6071567 TTT
66 TTT
6071570 CCTTGAAAAG
Statistics
Matches: 191, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
72 65 0.34
73 104 0.54
75 22 0.12
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.28
Consensus pattern (73 bp):
AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGACA
Found at i:6079146 original size:14 final size:15
Alignment explanation
Indices: 6079116--6079148 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
6079106 AAACTAAACC
*
6079116 AAAATTAAAACCATA
1 AAAATTAAAAACATA
6079131 AAAATTAAAAAC-TA
1 AAAATTAAAAACATA
6079145 AAAA
1 AAAA
6079149 ACAACCAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.73, C:0.09, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATTAAAAACATA
Found at i:6081027 original size:6 final size:6
Alignment explanation
Indices: 6081016--6081049 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
6081006 CCGAAAGTAA
6081016 TTATAT TTATAT TTATAT TTATAT TTATAT TTAT
1 TTATAT TTATAT TTATAT TTATAT TTATAT TTAT
6081050 TTATTAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (6 bp):
TTATAT
Found at i:6081208 original size:17 final size:18
Alignment explanation
Indices: 6081183--6081220 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 18
6081173 TAATTTAATA
**
6081183 TTTACATATTTTTATTTG
1 TTTACATATTAATATTTG
6081201 TTTA-ATATTAATATTTG
1 TTTACATATTAATATTTG
6081218 TTT
1 TTT
6081221 TCTGCAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (18 bp):
TTTACATATTAATATTTG
Found at i:6086741 original size:27 final size:27
Alignment explanation
Indices: 6086711--6086768 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
6086701 AATCATTGAG
*
6086711 ATTGGATTAAATGAGGTGTTTAATTGC
1 ATTGGATCAAATGAGGTGTTTAATTGC
* *
6086738 ATTGGATCAAATGAGGTGTTTAGTTGG
1 ATTGGATCAAATGAGGTGTTTAATTGC
6086765 ATTG
1 ATTG
6086769 AGAATAAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.28, C:0.03, G:0.29, T:0.40
Consensus pattern (27 bp):
ATTGGATCAAATGAGGTGTTTAATTGC
Found at i:6089047 original size:20 final size:20
Alignment explanation
Indices: 6089004--6089048 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
6088994 TAAATTGAAC
* *
6089004 AAAAAATAAATTTAAGAAAG
1 AAAAAATAAAATCAAGAAAG
6089024 AAAAAATAACAATCAAGAAA-
1 AAAAAATAA-AATCAAGAAAG
6089044 AAAAA
1 AAAAA
6089049 TGGGTGAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
21 8 0.36
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (20 bp):
AAAAAATAAAATCAAGAAAG
Found at i:6092463 original size:131 final size:131
Alignment explanation
Indices: 6092232--6093222 Score: 1726
Period size: 131 Copynumber: 7.6 Consensus size: 131
6092222 AACCGAAACC
* * * * * *
6092232 CAGCAC-AGTAGGGCACGA-TTCCTCGAATTTCTAGACATTGAACATTGCCTT-GTTTT--AGAA
1 CAGCACGA-TAGGGCACGATTTCC-CGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAA
** * *
6092292 TTTAGAAA-ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCA
64 TTTTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCA
6092356 ACA
129 ACA
6092359 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
1 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
6092424 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
66 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
6092489 A
131 A
6092490 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
1 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
6092555 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
66 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
6092620 A
131 A
6092621 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
1 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
6092686 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
66 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
6092751 A
131 A
6092752 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
1 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
6092817 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
66 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
6092882 A
131 A
6092883 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
1 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
*
6092948 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAAC
66 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
*
6093013 C
131 A
*
6093014 CAGCACGATAGGGCACGATTCCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
1 CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
* *
6093079 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCTATTATTTTGAACAAACGGGAAATTGCAAC
66 TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
6093144 -
131 A
* * * * *
6093144 CTAGCACGATAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTGCCTTCGTTTTAAAGAAT
1 C-AGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAAT
6093209 TTTTAAAGACATGA
65 TTTTAAAGACATGA
6093223 TTATAAAACT
Statistics
Matches: 839, Mismatches: 18, Indels: 10
0.97 0.02 0.01
Matches are distributed among these distances:
127 39 0.05
128 9 0.01
130 11 0.01
131 780 0.93
ACGTcount: A:0.37, C:0.18, G:0.17, T:0.28
Consensus pattern (131 bp):
CAGCACGATAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCATTTTAAAGAATT
TTTAAAGACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAAC
A
Found at i:6095011 original size:18 final size:18
Alignment explanation
Indices: 6094979--6095029 Score: 54
Period size: 18 Copynumber: 2.9 Consensus size: 18
6094969 AATTTAAATT
*
6094979 ATTTTTATAC-TTATTT-
1 ATTTATATACATTATTTG
6094995 ATATTAT-TACATATATTTG
1 AT-TTATATACAT-TATTTG
6095014 ATTTATATACATTATT
1 ATTTATATACATTATT
6095030 AAACCTATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 5 0.17
17 4 0.14
18 13 0.45
19 7 0.24
ACGTcount: A:0.33, C:0.06, G:0.02, T:0.59
Consensus pattern (18 bp):
ATTTATATACATTATTTG
Found at i:6096354 original size:130 final size:128
Alignment explanation
Indices: 6096102--6096491 Score: 487
Period size: 130 Copynumber: 3.0 Consensus size: 128
6096092 TAATTATTCA
* * *
6096102 TTTAAAAATTCTTT-AAGCGAAGGCGATACTCAATGTTTGGCAATTCGGGAATCGTGCCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGCGATACTCGATG-TTGGAAATTCGGGAATCGTGCCCTATCG
*
6096166 TGCTGGGTTGCGATTTCCCGTTTGTTCAAAACAATCGAATATTCCTTCGAAATTTCACTCATGTT
65 TGCTGGGTTGCGATTT-CCGTTTGTTCAAAACAATCGAATATTCCTTTGAAATTTCACTCATGTT
* *
6096231 TTTAAAAATTCTTTAAAACAAAGGCGATACTCGATGTATGGAAATTCGAGAATCGTGCCCTATCG
1 TTTAAAAATTCTTTAAAACGAAGGCGATACTCGATGT-TGGAAATTCGGGAATCGTGCCCTATCG
* * *
6096296 TGCTGGGTTGCGATTTCTCATTTGTTCAAAACAATCGAAGATTCCTTTGGAATTTCACTCGA-GT
65 TGCTGGGTTGCGATTTC-CGTTTGTTCAAAACAATCGAATATTCCTTTGAAATTTCACTC-ATGT
*
6096360 C
128 T
** * ** * * *
6096361 TTTAAAAGCTCTTCAAAACGAAGGTAATACTCGATGTTTGACAATTTGGGGAATCGTGCCTTATC
1 TTTAAAAATTCTTTAAAACGAAGGCGATACTCGATGTTGGA-AA-TTCGGGAATCGTGCCCTATC
* * * * *
6096426 ATGCTGGGTTGCAATTTCCTGTTTGTTCAAAATAGTCGAATATTCCTTTAAAATTTCACTCATGT
64 GTGCTGGGTTGCGATTTCC-GTTTGTTCAAAACAATCGAATATTCCTTTGAAATTTCACTCATGT
6096491 T
128 T
6096492 CTCTAAATTC
Statistics
Matches: 224, Mismatches: 29, Indels: 14
0.84 0.11 0.05
Matches are distributed among these distances:
129 19 0.08
130 134 0.60
131 71 0.32
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (128 bp):
TTTAAAAATTCTTTAAAACGAAGGCGATACTCGATGTTGGAAATTCGGGAATCGTGCCCTATCGT
GCTGGGTTGCGATTTCCGTTTGTTCAAAACAATCGAATATTCCTTTGAAATTTCACTCATGTT
Found at i:6099006 original size:89 final size:89
Alignment explanation
Indices: 6098899--6099462 Score: 595
Period size: 87 Copynumber: 6.4 Consensus size: 89
6098889 TTGTGGCTTC
* * * * * *
6098899 GATCTGCTCCACTACAACTTCAAGGAGATAAGATCTGCAATTTTCAGCCTGTTACCCTACTGCTT
1 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTT
6098964 AGGGGGTTAAGG-TTCACCGTCTTT
66 AGGGGGTTAAGGCTT-ACCGTCTTT
* * ** * * *
6098988 GATCTGTTCCACTGCAACTTTAGGGAGACAAGATCTATGATCTTCAACCTGTTACCCTACCACTG
1 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTT
* **
6099053 AGGGGGTTAAGGCTTGCTTTCTTT
66 AGGGGGTTAAGGCTTACCGTCTTT
* * * * * *
6099077 GATCTGTTCCACTGCAACTTTAGGGAGATAAGATATGCAAT-TT-AGCTTGTTACCCTACTACTT
1 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTT
*
6099140 AGGGGGTTAAGG-TTCACCGTCTTC
66 AGGGGGTTAAGGCTT-ACCGTCTTT
* * * * * * *
6099164 GATCTATTCCACTGCAACTTCAGGGAGATAAGATCTTCAATCTTCATCCTATTAACCTACTACTT
1 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTT
* * *
6099229 AGGTGGTTAAGGCTT-GCTTCTTT
66 AGGGGGTTAAGGCTTACCGTCTTT
* * ** * * *
6099252 GATTTGCTCCACTAC-TGTTTAGGGAAACAAGATCTACAATCTTTAGCCTGTTACCCTACTACTT
1 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTT
* * *
6099316 AGGGGGTTAAGCCTTA-CTTCTTC
66 AGGGGGTTAAGGCTTACCGTCTTT
* ** * * *
6099339 GATCTGCTCCACTACTGCTT-AGGAAGGCAAGATCTACAATCTTCGGCCTGTTACCCTACTACTT
1 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTT
* *
6099403 AAGGGGTTAAGGCTTGCCGTCTTT
66 AGGGGGTTAAGGCTTACCGTCTTT
6099427 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCT
1 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCT
6099463 GTGAATTCAC
Statistics
Matches: 390, Mismatches: 76, Indels: 18
0.81 0.16 0.04
Matches are distributed among these distances:
86 2 0.01
87 194 0.50
88 44 0.11
89 146 0.37
90 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (89 bp):
GATCTGTTCCACTACAACTTCAGGGAGACAAGATCTACAATCTTCAGCCTGTTACCCTACTACTT
AGGGGGTTAAGGCTTACCGTCTTT
Found at i:6099239 original size:176 final size:174
Alignment explanation
Indices: 6098899--6099463 Score: 663
Period size: 176 Copynumber: 3.2 Consensus size: 174
6098889 TTGTGGCTTC
* * *
6098899 GATCTGCTCCACTACAACTTCAAGGAGATAAGATCTGCAATTTTCAGCCTGTTACCCTACTGCTT
1 GATCTGCTCCACTACAACTTCAGGGAGACAAGATCTGCAATTTT-AGCCTGTTACCCTACTACTT
* *
6098964 AGGGGGTTAAGGTTCACCGTCTTTGATCTGTTCCACTGCAACTTTAGGGAGACAAGATCTAT-GA
65 AGGGGGTTAAGGTTCACCGTCTTCGATCTGTTCCACTGCAAC-TTAGGGAGACAAGATCT-TCAA
* *
6099028 TCTTCAACCTGTTACCCTACCACTGAGGGGGTTAAGGCTTGCTTTCTTT
128 TCTTCAACCTGTTACCCTACTACTTA-GGGGTTAAGGCTTGC-TTCTTT
* * * * * *
6099077 GATCTGTTCCACTGCAACTTTAGGGAGATAAGATATGCAA-TTTAGCTTGTTACCCTACTACTTA
1 GATCTGCTCCACTACAACTTCAGGGAGACAAGATCTGCAATTTTAGCCTGTTACCCTACTACTTA
* *
6099141 GGGGGTTAAGGTTCACCGTCTTCGATCTATTCCACTGCAACTTCAGGGAGATAAGATCTTCAATC
66 GGGGGTTAAGGTTCACCGTCTTCGATCTGTTCCACTGCAACTT-AGGGAGACAAGATCTTCAATC
* * *
6099206 TTCATCCTATTAACCTACTACTTAGGTGGTTAAGGCTTGCTTCTTT
130 TTCAACCTGTTACCCTACTACTTAGG-GGTTAAGGCTTGCTTCTTT
* ** * * *
6099252 GATTTGCTCCACTAC-TGTTTAGGGAAACAAGATCTACAATCTTTAGCCTGTTACCCTACTACTT
1 GATCTGCTCCACTACAACTTCAGGGAGACAAGATCTGCAAT-TTTAGCCTGTTACCCTACTACTT
* * * * ** * * *
6099316 AGGGGGTTAAGCCTT-A-CTTCTTCGATCTGCTCCACTACTGCTTAGGAAGGCAAGATCTACAAT
65 AGGGGGTTAAG-GTTCACCGTCTTCGATCTGTTCCACTGCAACTTAGGGAGACAAGATCTTCAAT
** *
6099379 CTTCGGCCTGTTACCCTACTACTTAAGGGGTTAAGGCTTGCCGTCTTT
129 CTTCAACCTGTTACCCTACTACTT-AGGGGTTAAGGCTTG-CTTCTTT
*
6099427 GATCTGTTCCACTACAACTTCAGGGAGACAAGATCTG
1 GATCTGCTCCACTACAACTTCAGGGAGACAAGATCTG
6099464 TGAATTCACC
Statistics
Matches: 329, Mismatches: 49, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
174 66 0.20
175 66 0.20
176 157 0.48
177 5 0.02
178 35 0.11
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (174 bp):
GATCTGCTCCACTACAACTTCAGGGAGACAAGATCTGCAATTTTAGCCTGTTACCCTACTACTTA
GGGGGTTAAGGTTCACCGTCTTCGATCTGTTCCACTGCAACTTAGGGAGACAAGATCTTCAATCT
TCAACCTGTTACCCTACTACTTAGGGGTTAAGGCTTGCTTCTTT
Found at i:6107409 original size:58 final size:58
Alignment explanation
Indices: 6107338--6107452 Score: 194
Period size: 58 Copynumber: 2.0 Consensus size: 58
6107328 TCATCTCTCA
* *
6107338 CTGAATCTGGGCTAGTTGCTCTTGCATTTGTGACTGCATTTGTTCGTGCATGTCCTTG
1 CTGAATCTGGGCTAGCTGCTCTTGCATCTGTGACTGCATTTGTTCGTGCATGTCCTTG
* *
6107396 CTGAATCTTGGCTAGCTGCTCTTGCATCTGTGACTGCATTTGTTCTTGCATGTCCTT
1 CTGAATCTGGGCTAGCTGCTCTTGCATCTGTGACTGCATTTGTTCGTGCATGTCCTT
6107453 TTGCATTTGC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 53 1.00
ACGTcount: A:0.12, C:0.23, G:0.23, T:0.42
Consensus pattern (58 bp):
CTGAATCTGGGCTAGCTGCTCTTGCATCTGTGACTGCATTTGTTCGTGCATGTCCTTG
Found at i:6111104 original size:131 final size:131
Alignment explanation
Indices: 6110882--6111209 Score: 477
Period size: 131 Copynumber: 2.5 Consensus size: 131
6110872 CCCAGCAAAG
* * * * **
6110882 TAGGGCACGA-TTCCTCGAATTTCTAGACATTGAACATTGCCTT-GTTTT--AGAATTTAGAAA-
1 TAGGGCACGATTTCC-CGAATTACCAAACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAG
* * *
6110942 ACATGAGTGAAATTCTAAAGGAATATTCGATTATTTTGAACAAATGGGAAATTGCAACACAGCAC
65 ACATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACACAGCAC
6111007 GA
130 GA
*
6111009 TAGGGCACGATTTCCCGAATTACCAAACATCGAACGTTGCCTTCGTTTTAAAGAATTTTTAAAGA
1 TAGGGCACGATTTCCCGAATTACCAAACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAGA
*
6111074 CATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACCCAGCACG
66 CATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACACAGCACG
6111139 A
131 A
* * * *
6111140 TAGGGCACGATTCCCCGAATTGCCAAACATCAAACATTTCCTTCGTTTTAAAGAATTTTTAAAGA
1 TAGGGCACGATTTCCCGAATTACCAAACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAGA
6111205 CATGA
66 CATGA
6111210 TTATAAAACT
Statistics
Matches: 180, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
127 33 0.18
128 9 0.05
130 10 0.06
131 128 0.71
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.29
Consensus pattern (131 bp):
TAGGGCACGATTTCCCGAATTACCAAACATCGAACATTGCCTTCGTTTTAAAGAATTTTTAAAGA
CATGAATGAAATTCCAAAGGAATATTCGATTATTTTGAACAAACGGGAAATTGCAACACAGCACG
A
Found at i:6115049 original size:16 final size:16
Alignment explanation
Indices: 6115028--6115060 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
6115018 GGGTTCGAGG
6115028 TGTTTTTGAGATAGTT
1 TGTTTTTGAGATAGTT
*
6115044 TGTTTTTGAGTTAGTT
1 TGTTTTTGAGATAGTT
6115060 T
1 T
6115061 ATGTTAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.00, G:0.24, T:0.61
Consensus pattern (16 bp):
TGTTTTTGAGATAGTT
Found at i:6116320 original size:18 final size:18
Alignment explanation
Indices: 6116293--6116334 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
6116283 TCTACTGAAC
6116293 GGTTTCTATTA-TATTTAT
1 GGTTTCTATTACTATTT-T
*
6116311 GGTTTTTATTACTTATTTT
1 GGTTTCTATTAC-TATTTT
6116330 GGTTT
1 GGTTT
6116335 ACTTGATGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
18 10 0.48
19 6 0.29
20 5 0.24
ACGTcount: A:0.17, C:0.05, G:0.14, T:0.64
Consensus pattern (18 bp):
GGTTTCTATTACTATTTT
Found at i:6123548 original size:36 final size:36
Alignment explanation
Indices: 6123494--6123565 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
6123484 ATCTAGAAAC
* *
6123494 CCAAAAGAGAATAGAAATTAAGAAGAAAAGCTTTAA
1 CCAAAAGAGAACAAAAATTAAGAAGAAAAGCTTTAA
6123530 CCAAAAGAGAACAAAAATTAAGAAGAAAAGCTTTAA
1 CCAAAAGAGAACAAAAATTAAGAAGAAAAGCTTTAA
6123566 GTGACCTGCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.60, C:0.10, G:0.15, T:0.15
Consensus pattern (36 bp):
CCAAAAGAGAACAAAAATTAAGAAGAAAAGCTTTAA
Found at i:6125896 original size:15 final size:14
Alignment explanation
Indices: 6125864--6125901 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
6125854 TTTAAGAAAT
6125864 AATTTT-AAATTAA
1 AATTTTAAAATTAA
*
6125877 AATTTTAAAACTTGA
1 AATTTTAAAA-TTAA
6125892 AATTTTAAAA
1 AATTTTAAAA
6125902 GTAATTATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 6 0.27
14 3 0.14
15 13 0.59
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.42
Consensus pattern (14 bp):
AATTTTAAAATTAA
Found at i:6126094 original size:17 final size:17
Alignment explanation
Indices: 6126074--6126107 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
6126064 ATTTAATATT
6126074 AACTC-ATAATAAATAAC
1 AACTCTATAAT-AATAAC
6126091 AACTCTATAATAATAAC
1 AACTCTATAATAATAAC
6126108 TAGAGCTCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.56, C:0.18, G:0.00, T:0.26
Consensus pattern (17 bp):
AACTCTATAATAATAAC
Found at i:6127903 original size:20 final size:19
Alignment explanation
Indices: 6127875--6127914 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
6127865 TATTAAAATG
*
6127875 TAAATTTTAATCATTTATAT
1 TAAAATTTAAT-ATTTATAT
*
6127895 TAAAATTTAATATTTGTAT
1 TAAAATTTAATATTTATAT
6127914 T
1 T
6127915 GGGTTGGTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.40, C:0.03, G:0.03, T:0.55
Consensus pattern (19 bp):
TAAAATTTAATATTTATAT
Found at i:6128405 original size:8 final size:9
Alignment explanation
Indices: 6128380--6128414 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
6128370 ATTTTGGATG
6128380 AAAATTTTT
1 AAAATTTTT
*
6128389 GAAATTTTT
1 AAAATTTTT
*
6128398 AAGATTTTT
1 AAAATTTTT
6128407 AAAATTTT
1 AAAATTTT
6128415 AGTATTTTAG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (9 bp):
AAAATTTTT
Found at i:6129784 original size:15 final size:16
Alignment explanation
Indices: 6129755--6129792 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
6129745 AATAAATTAT
*
6129755 TAAAAATTTTATAAAA
1 TAAAAATATTATAAAA
6129771 TAAAAATATT-TAAAA
1 TAAAAATATTATAAAA
6129786 TAGAAAA
1 TA-AAAA
6129793 AACCAATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.32
Consensus pattern (16 bp):
TAAAAATATTATAAAA
Found at i:6131625 original size:27 final size:27
Alignment explanation
Indices: 6131573--6131625 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
6131563 TTTAACAGTT
*
6131573 AAATGTGTTTAAATTCTTTCTTTAAAA
1 AAATGTGTTTAAATTCTTTCTCTAAAA
6131600 AAATGTGTTTAAATTCTATT-TCTAAA
1 AAATGTGTTTAAATTCT-TTCTCTAAA
6131626 CTTGTAGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 22 0.92
28 2 0.08
ACGTcount: A:0.38, C:0.08, G:0.08, T:0.47
Consensus pattern (27 bp):
AAATGTGTTTAAATTCTTTCTCTAAAA
Found at i:6132057 original size:19 final size:20
Alignment explanation
Indices: 6132033--6132071 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
6132023 TTAAATTAGA
6132033 TTTTTTTT-ATTTTTAATAT
1 TTTTTTTTAATTTTTAATAT
6132052 TTTTTTTTAAATTTTTAATA
1 TTTTTTTT-AATTTTTAATA
6132072 ATTTATTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.44
21 10 0.56
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (20 bp):
TTTTTTTTAATTTTTAATAT
Found at i:6132512 original size:14 final size:15
Alignment explanation
Indices: 6132488--6132517 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
6132478 AAAATTGTTT
6132488 TTAATTATAATTTTA
1 TTAATTATAATTTTA
6132503 TTAA-TATAATTTTA
1 TTAATTATAATTTTA
6132517 T
1 T
6132518 ATTATTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
TTAATTATAATTTTA
Found at i:6139811 original size:4 final size:4
Alignment explanation
Indices: 6139796--6139861 Score: 69
Period size: 4 Copynumber: 16.0 Consensus size: 4
6139786 ATTCATTTGA
* * * *
6139796 CATT CATG CATT CATT CATG CATT CATT GACATT CATG CATT CATT CATG
1 CATT CATT CATT CATT CATT CATT CATT --CATT CATT CATT CATT CATT
*
6139846 CATT CATT CATA CATT
1 CATT CATT CATT CATT
6139862 GCATATCCCA
Statistics
Matches: 50, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
4 46 0.92
6 4 0.08
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (4 bp):
CATT
Found at i:6139813 original size:12 final size:12
Alignment explanation
Indices: 6139796--6139861 Score: 81
Period size: 12 Copynumber: 6.0 Consensus size: 12
6139786 ATTCATTTGA
6139796 CATTCATGCATT
1 CATTCATGCATT
6139808 CATTCATGCATT
1 CATTCATGCATT
6139820 CA-T--TG-A--
1 CATTCATGCATT
6139826 CATTCATGCATT
1 CATTCATGCATT
6139838 CATTCATGCATT
1 CATTCATGCATT
*
6139850 CATTCATACATT
1 CATTCATGCATT
6139862 GCATATCCCA
Statistics
Matches: 47, Mismatches: 1, Indels: 12
0.78 0.02 0.20
Matches are distributed among these distances:
6 2 0.04
7 1 0.02
8 1 0.02
9 4 0.09
10 1 0.02
11 1 0.02
12 37 0.79
ACGTcount: A:0.27, C:0.24, G:0.08, T:0.41
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:6139828 original size:30 final size:30
Alignment explanation
Indices: 6139785--6139853 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
6139775 TCATGACTGA
6139785 CATTCATTTGACATTCATGCATTCATTCATG
1 CATTCA-TTGACATTCATGCATTCATTCATG
6139816 CATTCATTGACATTCATGCATTCATTCATG
1 CATTCATTGACATTCATGCATTCATTCATG
6139846 CATTCATT
1 CATTCATT
6139854 CATACATTGC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
30 32 0.84
31 6 0.16
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (30 bp):
CATTCATTGACATTCATGCATTCATTCATG
Found at i:6148341 original size:69 final size:70
Alignment explanation
Indices: 6148166--6148341 Score: 219
Period size: 71 Copynumber: 2.5 Consensus size: 70
6148156 CTTTCCAAGG
* ** *
6148166 AAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAATTTTT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
*
6148231 TTTTT
66 GTTTT
* ** * *
6148236 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAGTTTA
1 -AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTA
6148301 TGTTTT
65 TGTTTT
** *
6148307 -AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
6148342 TTTAATTTTT
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
69 31 0.34
71 60 0.66
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (70 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCCGAGGTATTTTTAATTTAT
GTTTT
Found at i:6148485 original size:76 final size:76
Alignment explanation
Indices: 6148359--6148853 Score: 703
Period size: 76 Copynumber: 6.5 Consensus size: 76
6148349 TTTGTTTTTC
* **
6148359 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
6148424 GTTGCTAAAAA
66 GTTGCTAAAAA
6148435 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
6148500 GTTGCTAAAAA
66 GTTGCTAAAAA
6148511 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
6148576 GTTGCTAAAAA
66 GTTGCTAAAAA
6148587 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
**
6148652 GTT--T--TCA
66 GTTGCTAAAAA
* * * * *
6148659 AAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* *
6148724 GTTTTCAAAAAAA
66 G-TTGC-TAAAAA
* * ** * *
6148737 AAAATCAACTTATATTACGAGAGGTGAGTTGAGCCTC-GGTTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGG---ACACGCTGAGGTAATTTCAATT
**
6148801 TCTGTTTTTAAAAA
63 TCTGTTGCTAAAAA
** *
6148815 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAG
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAG
6148854 ATTACACACT
Statistics
Matches: 384, Mismatches: 25, Indels: 17
0.90 0.06 0.04
Matches are distributed among these distances:
72 62 0.16
73 2 0.01
74 1 0.00
76 217 0.57
77 1 0.00
78 73 0.19
79 4 0.01
80 24 0.06
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (76 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTGCTAAAAA
Found at i:6148789 original size:228 final size:226
Alignment explanation
Indices: 6148359--6149801 Score: 872
Period size: 231 Copynumber: 6.1 Consensus size: 226
6148349 TTTGTTTTTC
*
6148359 AAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
*
6148424 GTTGCTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAA
66 GTT-CT-AAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAA
* *
6148489 TTTCAATTTCTGTTGCTAAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACA
129 TTTCAATTTCTGTTGCAAAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACA
6148554 CGCTGAGGTAATTTCAATTTCTGTTGCTAAAAA
194 CGCTGAGGTAATTTCAATTTCTGTTGCTAAAAA
**
6148587 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
** * * * *
6148652 GTT-T-TCAAAATTCAACTTATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTT
66 GTTCTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT
* * **
6148715 TCAATTTCTGTTTTCAAAAAAAAAAATCAACTTATATTACGAGAGGTGAGTTGAGCCTC-GGTTC
131 TCAATTTCTG-TTGC-AAAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGG---
* * **
6148779 ACATGCTGAGGTATTTTCAATTTCTGTTTTTAAAAA
191 ACACGCTGAGGTAATTTCAATTTCTGTTGCTAAAAA
* * * * **
6148815 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATTACACACTGTGGTGTTTTTTTCAA
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG--GACACGCTG-AG-G-TAATTTCAA
* * *** ** * * * ** *
6148880 -TTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA-CACGATGAGGTAATTTCAATTTCTGTTTGT
61 TTTC-TGTT-CTA-A-AAAAAATCA-ACTCA-TATTGCGA-GA---AA--T-GA-----G-TTG-
** * * * * *** * * * ***** *
6148943 CAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTT-TAATTTCTACTTTTTTAAAATCAG
106 --AGCCTCAA--GACA-CGC-TGAGGTAATTTCAA--TTTCT-GTTGC-A--AAAAAAAAATCAA
* * ** * * * *
6149007 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TG-T--
159 CTCATATTACGAGAAATGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGCTAA
***
6149068 TTT
224 AAA
**
6149071 AATTTCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTC
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGG-----T-AA-TTTC
* * *
6149136 GTTTTTTTAATTTATGTTTCAAAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAG
59 --------AATTTCTG-TTCTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAG
* * * **
6149201 --ACGCTGAGGTAATTTCAATTTTTGTTTGTC-----AAAGATCAACTCATATTGCGAGAGGTGA
115 ACACGCTGAGGTAATTTCAATTTCTG-TTG-CAAAAAAAAAATCAACTCATATTACGAGAAATGA
* * * * ** *
6149259 GTTGAGCCTCAGGACACGCTGAGATATTTTCAAATTCTATTTTTATCAAA
178 GTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTGTTGCTA-AAAA
* * *
6149309 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * ** * *
6149374 ATTTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATA
66 -GTTCTA--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
* * * ** ** * **
6149439 TTTTCAAATTCTATTTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
128 ATTTCAATTTCT-GTTGCAAAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGA
* * * * ** *
6149504 CACGCTGAGATATTTTCAAATTCTATTTTTATCAAA
192 CACGCTGAGGTAATTTCAATTTCTGTTGCTA-AAAA
* * *
6149540 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAATTCT
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
* * ** * *
6149605 ATTTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATA
66 -GTTCTA--AAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTA
* * * ** ** * ** *
6149670 TTTTCAAATTCTATTTTTATCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGA
128 ATTTCAATTTCT-GTTGCAAAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGA
* * **
6149735 CACGCTGAGGTATTTTCAATTTTTGCTT--TTTAAA
192 CACGCTGAGGTAATTTCAATTTCTG-TTGCTAAAAA
*
6149769 AGAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 AAAATCAACTCATATTGCGAGAGGTGAGTTGAG
6149802 TCTCGGGCCA
Statistics
Matches: 988, Mismatches: 146, Indels: 161
0.76 0.11 0.12
Matches are distributed among these distances:
223 8 0.01
224 62 0.06
225 46 0.05
226 39 0.04
227 21 0.02
228 133 0.13
229 35 0.04
230 8 0.01
231 297 0.30
232 7 0.01
233 68 0.07
234 1 0.00
235 1 0.00
238 52 0.05
239 9 0.01
240 6 0.01
241 10 0.01
242 2 0.00
243 3 0.00
245 1 0.00
246 1 0.00
247 6 0.01
250 3 0.00
251 2 0.00
252 4 0.00
253 1 0.00
254 7 0.01
255 6 0.01
256 39 0.04
257 3 0.00
258 6 0.01
259 11 0.01
260 29 0.03
261 3 0.00
262 36 0.04
263 9 0.01
264 3 0.00
265 1 0.00
266 5 0.01
267 4 0.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.32
Consensus pattern (226 bp):
AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCT
GTTCTAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATT
TCAATTTCTGTTGCAAAAAAAAAATCAACTCATATTACGAGAAATGAGTTGAGCCTCAGGACACG
CTGAGGTAATTTCAATTTCTGTTGCTAAAAA
Found at i:6149087 original size:72 final size:73
Alignment explanation
Indices: 6149007--6149148 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 73
6148997 TTAAAATCAG
* * *
6149007 CTCATATTGCAAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTTTCAATTTTTG-TGTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
6149071 AATTTCAA
66 AATTTCAA
* *
6149079 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTTTTTT
1 CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
6149144 AATTT
66 AATTT
6149149 ATGTTTCAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
72 54 0.84
73 10 0.16
ACGTcount: A:0.22, C:0.15, G:0.24, T:0.39
Consensus pattern (73 bp):
CTCATATTGCAAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTTCGTTGTTTT
AATTTCAA
Found at i:6149326 original size:77 final size:77
Alignment explanation
Indices: 6149158--6149801 Score: 1099
Period size: 77 Copynumber: 8.5 Consensus size: 77
6149148 TATGTTTCAA
* * * *
6149158 AAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCA--AGACGCTGAGGTAATTTC-AAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
*
6149220 T-T-TTGTTTGTC
66 TCTATT-TTTATC
*
6149231 --AAAGATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
6149294 TCTATTTTTATC
66 TCTATTTTTATC
6149306 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
6149371 TCTATTTTTATC
66 TCTATTTTTATC
6149383 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
6149448 TCTATTTTTATC
66 TCTATTTTTATC
6149460 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
6149525 TCTATTTTTATC
66 TCTATTTTTATC
6149537 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
6149602 TCTATTTTTATC
66 TCTATTTTTATC
6149614 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
6149679 TCTATTTTTATC
66 TCTATTTTTATC
* * *
6149691 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATT
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
* **
6149756 TTTGCTTTT-T-
66 TCTATTTTTATC
*
6149766 AAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
6149802 TCTCGGGCCA
Statistics
Matches: 550, Mismatches: 14, Indels: 12
0.95 0.02 0.02
Matches are distributed among these distances:
71 37 0.07
73 15 0.03
74 4 0.01
75 41 0.07
76 3 0.01
77 450 0.82
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (77 bp):
AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGATATTTTCAAAT
TCTATTTTTATC
Found at i:6150062 original size:71 final size:71
Alignment explanation
Indices: 6149959--6150096 Score: 222
Period size: 71 Copynumber: 1.9 Consensus size: 71
6149949 CTGTTTTAAT
* *
6149959 TCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACCTCAAGTCACATTAAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTAAGGTATTTTCAAT
6150024 TTATCA
66 TTATCA
* * * *
6150030 TCAAAAAATCAACTCATATTGCGAGAGTTGAGTTGAACCTCAAGACCCGTTGAGGTATTTTCAAT
1 TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTAAGGTATTTTCAAT
6150095 TT
66 TT
6150097 CTGCTCAATT
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 61 1.00
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.32
Consensus pattern (71 bp):
TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACACATTAAGGTATTTTCAAT
TTATCA
Found at i:6150199 original size:155 final size:156
Alignment explanation
Indices: 6149868--6150220 Score: 414
Period size: 155 Copynumber: 2.2 Consensus size: 156
6149858 AATTTATGTG
* * *
6149868 TTTCAAAAAAATCAGCTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTGTTTTCCA
1 TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTATTTTCAA
** * * **
6149933 TTTCTATTTTCAATTTCTGTTTTAATTCAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAACC
65 TTTC-ATGCTCAATTTATGTTTT-ATTCAAAAAACCAACTCATATTGCAAGAGGTGAGTTGAACC
6149998 TCAAGTCACATTAAGGTATTTTCAATTTAT
128 TCAAGTCACA-TAAGGTATTTTCAATTTAT
** * *
6150028 CATCAAAAAATCAACTCATATTGCGAGAGTTGAGTTGAACCTCAAGACCCGTTGAGGTATTTTCA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGA--CGCTGAGGTATTTTCA
*
6150093 ATTTC-TGCTCAATTTATG-TTT-TTC-AAAAACCAACTCATATTGCAAGAGGTGAGTTGAGCCT
64 ATTTCATGCTCAATTTATGTTTTATTCAAAAAACCAACTCATATTGCAAGAGGTGAGTTGAACCT
* * *
6150154 CACA-T-GC-TGAGGTGTTTTCAATTTCTATT
129 CA-AGTCACATAAGGTATTTTCAA-TT-TA-T
6150183 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
6150221 GCCTTGGCTT
Statistics
Matches: 167, Mismatches: 20, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
152 12 0.07
153 2 0.01
154 3 0.02
155 72 0.43
156 4 0.02
158 3 0.02
159 51 0.31
160 2 0.01
161 18 0.11
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35
Consensus pattern (156 bp):
TTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACCTCAAGACGCTGAGGTATTTTCAAT
TTCATGCTCAATTTATGTTTTATTCAAAAAACCAACTCATATTGCAAGAGGTGAGTTGAACCTCA
AGTCACATAAGGTATTTTCAATTTAT
Found at i:6150289 original size:78 final size:75
Alignment explanation
Indices: 6150101--6150342 Score: 298
Period size: 78 Copynumber: 3.2 Consensus size: 75
6150091 CAATTTCTGC
* * *
6150101 TCAATTTATGTTTTTC-AAAAACCAACTCATATTGCAAGAGGTGAGTTGAGCC-T--C-ACATGC
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTACATGC
*
6150161 TGAGGTGTTT
66 TGAGGTTTTT
* *
6150171 TCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTACACG
1 TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC-TACATG
6150236 CTGAGGTATTTT
65 CTGAGGT-TTTT
* * * *
6150248 TCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGTCTCGGCTCACAT
1 TCAATTTCTGTTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT-ACAT
6150313 GCTGAGGTCTTTT
64 GCTGAGGT-TTTT
*
6150326 T-AATTTCTGCTTTTCAA
1 TCAATTTCTGTTTTTCAA
6150343 TTTCTATTTT
Statistics
Matches: 148, Mismatches: 15, Indels: 12
0.85 0.09 0.07
Matches are distributed among these distances:
70 14 0.09
71 34 0.23
72 1 0.01
74 1 0.01
76 13 0.09
77 30 0.20
78 55 0.37
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (75 bp):
TCAATTTCTGTTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTACATGC
TGAGGTTTTT
Found at i:6150353 original size:14 final size:14
Alignment explanation
Indices: 6150322--6150371 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 14
6150312 TGCTGAGGTC
*
6150322 TTTTT-AATTTCTG
1 TTTTTCAATTTCTA
*
6150335 CTTTTCAATTTCTA
1 TTTTTCAATTTCTA
*
6150349 TTTTTTCAATTTATA
1 -TTTTTCAATTTCTA
6150364 TTTTTCAA
1 TTTTTCAA
6150372 AAATCAACTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
13 4 0.13
14 15 0.48
15 12 0.39
ACGTcount: A:0.22, C:0.12, G:0.02, T:0.64
Consensus pattern (14 bp):
TTTTTCAATTTCTA
Found at i:6150356 original size:15 final size:15
Alignment explanation
Indices: 6150336--6150368 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
6150326 TAATTTCTGC
*
6150336 TTTTCAATTTCTATT
1 TTTTCAATTTATATT
6150351 TTTTCAATTTATATT
1 TTTTCAATTTATATT
6150366 TTT
1 TTT
6150369 CAAAAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.09, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTCAATTTATATT
Found at i:6150471 original size:73 final size:74
Alignment explanation
Indices: 6150352--6150513 Score: 218
Period size: 73 Copynumber: 2.2 Consensus size: 74
6150342 ATTTCTATTT
* * * * *
6150352 TTTCAATTTATATTTTTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG-GACACG
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCATCGGCCACACG
6150416 CTGAGGTAA
66 CTGAGGTAA
* * *
6150425 TTTCAATTTCTGTTTGTCAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCATCGGCTCACAT
1 TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCATCGGC-CACAC
**
6150490 GCTGAGGTCT
65 GCTGAGGTAA
6150500 TTTCAATTTCTGTT
1 TTTCAATTTCTGTT
6150514 CTTCAATTTC
Statistics
Matches: 77, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
73 52 0.68
75 25 0.32
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (74 bp):
TTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCATCGGCCACACG
CTGAGGTAA
Found at i:6150488 original size:177 final size:181
Alignment explanation
Indices: 6150168--6150524 Score: 564
Period size: 177 Copynumber: 2.0 Consensus size: 181
6150158 TGCTGAGGTG
* * * *
6150168 TTTTCAATTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTTAC
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGC-GAC
* *
6150233 ACGCTGAGGTATTTTTCAATTTCTGTTTGTCAAAAAAATCAACTCATATTGTGAGAGGTGAGTTG
65 ACGCTGAGGTATATTTCAATTTCTGTTTGTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTG
*
6150298 AGTCTCGGCTCACATGCTGAGGTCTTTTTAATTTCTGCTT-TTCAATTTCTATT
129 AGTCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTG-TTCTTCAATTTCTATT
6150351 TTTTCAATTTATATTTTTC-AAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGG-GACA
1 TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCGACA
*
6150414 CGCTGAGGTA-ATTTCAATTTCTGTTTGTC-AAAAATTAACTCATATTGCGAGAGGTGAGTTGAG
66 CGCTGAGGTATATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
6150477 -CATCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCT
131 TC-TCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCT
6150525 GTTCGTAAAA
Statistics
Matches: 164, Mismatches: 8, Indels: 10
0.90 0.04 0.05
Matches are distributed among these distances:
176 3 0.02
177 74 0.45
179 18 0.11
180 13 0.08
182 38 0.23
183 18 0.11
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (181 bp):
TTTTCAATTTATATTTTTCAAAAAATCAACTCATATTGCGAAAGGTGAGTTGAGCCTCGGCGACA
CGCTGAGGTATATTTCAATTTCTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
TCTCGGCTCACATGCTGAGGTCTTTTCAATTTCTGTTCTTCAATTTCTATT
Found at i:6150520 original size:14 final size:14
Alignment explanation
Indices: 6150501--6150528 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6150491 CTGAGGTCTT
6150501 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6150515 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6150529 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:6150579 original size:91 final size:91
Alignment explanation
Indices: 6150426--6150659 Score: 427
Period size: 91 Copynumber: 2.6 Consensus size: 91
6150416 CTGAGGTAAT
* * *
6150426 TTCAATTTCTGTTTGT--CAAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCATCGGCTCACA
1 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGCTCACA
6150489 TGCTGAGGTCTTTTCAATTTCTGTTC
66 TGCTGAGGTCTTTTCAATTTCTGTTC
6150515 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGCTCACA
1 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGCTCACA
6150580 TGCTGAGGTCTTTTCAATTTCTGTTC
66 TGCTGAGGTCTTTTCAATTTCTGTTC
6150606 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
6150660 CTCAGGACAC
Statistics
Matches: 140, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
89 15 0.11
91 125 0.89
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.35
Consensus pattern (91 bp):
TTCAATTTCTGTTCGTAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGCTCACA
TGCTGAGGTCTTTTCAATTTCTGTTC
Found at i:6150611 original size:14 final size:14
Alignment explanation
Indices: 6150592--6150619 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
6150582 CTGAGGTCTT
6150592 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6150606 TTCAATTTCTGTTC
1 TTCAATTTCTGTTC
6150620 GTAAAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.57
Consensus pattern (14 bp):
TTCAATTTCTGTTC
Found at i:6151180 original size:17 final size:17
Alignment explanation
Indices: 6151147--6151181 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
6151137 TAATTTCTGC
* *
6151147 TTTTCAATTTCTGTTTT
1 TTTTCAATTTATATTTT
6151164 TTTTCAATTTATATTTT
1 TTTTCAATTTATATTTT
6151181 T
1 T
6151182 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.17, C:0.09, G:0.03, T:0.71
Consensus pattern (17 bp):
TTTTCAATTTATATTTT
Found at i:6151355 original size:77 final size:77
Alignment explanation
Indices: 6151260--6152123 Score: 1493
Period size: 77 Copynumber: 11.2 Consensus size: 77
6151250 CTACTTTTGC
*
6151260 GAGAAGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
6151325 AACTCATATTGT
66 AACTCATATTGT
6151337 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
6151402 AACTCATATTGT
66 AACTCATATTGT
6151414 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
6151479 AACTCATATTGT
66 AACTCATATTGT
6151491 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
6151556 AACTCATATTGT
66 AACTCATATTGT
6151568 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
6151633 AACTCATATTGT
66 AACTCATATTGT
6151645 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
6151710 AACTCATATTGT
66 AACTCATATTGT
6151722 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
6151787 AACTCATATTGT
66 AACTCATATTGT
6151799 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
6151864 AACTCATATTGT
66 AACTCATATTGT
* *
6151876 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCTTTTCAAAAAAATC
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
*
6151941 AACTCATATTGC
66 AACTCATATTGT
** * ** * *
6151953 GAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGC-ATTTTCAATTTCTGCTTTTCAAAAAAAT
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGA-GCTATTTTCAATTTCTGCATTTCAAAAGAAT
*
6152017 CAACTCATATTGC
65 CAACTCATATTGT
** * ** *
6152030 GAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGC-ATTTTCAATTTCTGCTTTTC-AAA-AAT
1 GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGA-GCTATTTTCAATTTCTGCATTTCAAAAGAAT
* *
6152092 CAACTTATATTGC
65 CAACTCATATTGT
*
6152105 GAGATGTGAGTTGAGCCTT
1 GAGAGGTGAGTTGAGCCTT
6152124 GGGTTTACAT
Statistics
Matches: 774, Mismatches: 12, Indels: 4
0.98 0.02 0.01
Matches are distributed among these distances:
75 32 0.04
76 3 0.00
77 737 0.95
78 2 0.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (77 bp):
GAGAGGTGAGTTGAGCCTTTGCTCACGTGCTGAGCTATTTTCAATTTCTGCATTTCAAAAGAATC
AACTCATATTGT
Found at i:6153364 original size:36 final size:36
Alignment explanation
Indices: 6153315--6153383 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
6153305 CGAAGCTCAT
* *
6153315 ATCACTATGTTCTGCAGACGAATGGCAGGCCATCAC
1 ATCACTATATTCTGCAGACAAATGGCAGGCCATCAC
6153351 ATCACTATATTCTGCAGACAAATGGCAGGCCAT
1 ATCACTATATTCTGCAGACAAATGGCAGGCCAT
6153384 GTCAATAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.23
Consensus pattern (36 bp):
ATCACTATATTCTGCAGACAAATGGCAGGCCATCAC
Found at i:6160267 original size:25 final size:26
Alignment explanation
Indices: 6160239--6160289 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
6160229 TTTATTTCAT
*
6160239 TAAATAAAAAAT-TTTAAAAATATAA
1 TAAATAAAAAATATTTAAAAACATAA
* *
6160264 TAAATCAAATATATTTAAAAACATAA
1 TAAATAAAAAATATTTAAAAACATAA
6160290 AAACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 10 0.45
26 12 0.55
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (26 bp):
TAAATAAAAAATATTTAAAAACATAA
Found at i:6160281 original size:26 final size:24
Alignment explanation
Indices: 6160251--6160299 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
6160241 AATAAAAAAT
*
6160251 TTTAAAAATATAATAAATCAAATATA
1 TTTAAAAACATAA-AAA-CAAATATA
6160277 TTTAAAAACATAAAAACAAATAT
1 TTTAAAAACATAAAAACAAATAT
6160300 TAAAACAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.32
25 3 0.14
26 12 0.55
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (24 bp):
TTTAAAAACATAAAAACAAATATA
Found at i:6160319 original size:21 final size:21
Alignment explanation
Indices: 6160270--6160328 Score: 59
Period size: 21 Copynumber: 2.8 Consensus size: 21
6160260 ATAATAAATC
*
6160270 AAAT-ATATTTAAAA-ACATAA
1 AAATAATA-TTAAAACAAATAA
*
6160290 AAACAAATATTAAAACAAATAA
1 AAA-TAATATTAAAACAAATAA
*
6160312 AAATAATACTAAAACAA
1 AAATAATATTAAAACAA
6160329 TTCTTAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 3 0.09
21 18 0.56
22 11 0.34
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.22
Consensus pattern (21 bp):
AAATAATATTAAAACAAATAA
Found at i:6162306 original size:12 final size:12
Alignment explanation
Indices: 6162289--6162313 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6162279 TTGGGTTAGT
6162289 GTTTTGGGCTAA
1 GTTTTGGGCTAA
6162301 GTTTTGGGCTAA
1 GTTTTGGGCTAA
6162313 G
1 G
6162314 GGTTTTGGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.08, G:0.36, T:0.40
Consensus pattern (12 bp):
GTTTTGGGCTAA
Found at i:6162641 original size:21 final size:21
Alignment explanation
Indices: 6162615--6162726 Score: 57
Period size: 21 Copynumber: 5.3 Consensus size: 21
6162605 AAGACATGTG
6162615 ACTTCAATCAATTCCACTGAA
1 ACTTCAATCAATTCCACTGAA
** ** *
6162636 ACTTCAAGGAGA-TCTGCTGTA
1 ACTTCAATCA-ATTCCACTGAA
* * *
6162657 GCTTCGATTAATTCCACTGAA
1 ACTTCAATCAATTCCACTGAA
** ** *
6162678 ACTTCAAGGAGA-TCTGCTGTA
1 ACTTCAATCA-ATTCCACTGAA
* *
6162699 GCTTCGATCAATTCCACTGAA
1 ACTTCAATCAATTCCACTGAA
6162720 ACTTCAA
1 ACTTCAA
6162727 GGAGATCTGT
Statistics
Matches: 59, Mismatches: 28, Indels: 8
0.62 0.29 0.08
Matches are distributed among these distances:
20 2 0.03
21 55 0.93
22 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.29
Consensus pattern (21 bp):
ACTTCAATCAATTCCACTGAA
Done.