Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 24 of 186
Found at i:7052722 original size:20 final size:21
Alignment explanation
Indices: 7052675--7052722 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
7052665 CCCTTATTTG
*
7052675 TTATT-TTAGTTATTTTATCA
1 TTATTATTAGTTATTTAATCA
*
7052695 TTA-AATTAGTTATTTAAT-A
1 TTATTATTAGTTATTTAATCA
7052714 TTATTATTA
1 TTATTATTA
7052723 CTATTATTAC
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
TTATTATTAGTTATTTAATCA
Found at i:7052729 original size:12 final size:12
Alignment explanation
Indices: 7052712--7052745 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
7052702 AGTTATTTAA
7052712 TATTATTATTAC
1 TATTATTATTAC
*
7052724 TATTATTACTAC
1 TATTATTATTAC
*
7052736 AATTATTATT
1 TATTATTATT
7052746 GTTATCCATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.00, T:0.56
Consensus pattern (12 bp):
TATTATTATTAC
Found at i:7052858 original size:16 final size:14
Alignment explanation
Indices: 7052829--7052876 Score: 53
Period size: 16 Copynumber: 3.3 Consensus size: 14
7052819 ATTTCATTAT
*
7052829 TTTTATATTCTATAA
1 TTTTATATACTAT-A
7052844 TTTTATATACTTATA
1 TTTTATATAC-TATA
7052859 TATTTATATAC-ATA
1 T-TTTATATACTATA
7052873 TTTT
1 TTTT
7052877 CATTTTTTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 3 0.10
14 4 0.13
15 11 0.37
16 12 0.40
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.60
Consensus pattern (14 bp):
TTTTATATACTATA
Found at i:7066863 original size:44 final size:45
Alignment explanation
Indices: 7066796--7067377 Score: 477
Period size: 44 Copynumber: 13.2 Consensus size: 45
7066786 AAGTCATTAA
* * *
7066796 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * *
7066840 AGCAGATCTTATCTTCCTATATTGGTAG-GAAGTAGATCGACGA-
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * * *
7066883 CGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * *
7066928 AACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGGAGGT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * *
7066972 AGCAGATCTTATCTTCCTATATTGGTAG-GAAGTAGATCGACGA-
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * * *
7067015 CGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * *
7067060 AACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * * *
7067104 ATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGACCGACGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * *
7067148 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGGAAAAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATC-GAAGAT
* * * *
7067193 AACAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * *
7067238 AGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGGTCAAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * * *
7067282 ATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGACCGACGAT
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
* * * * * * * *
7067326 -GCAGATTTTGTTTTCCCATACTGGTGGTGGAGAAGATCGAAGAA
1 AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
7067370 AGCAGATC
1 AGCAGATC
7067378 GACGATGGCG
Statistics
Matches: 420, Mismatches: 105, Indels: 25
0.76 0.19 0.05
Matches are distributed among these distances:
43 87 0.21
44 220 0.52
45 77 0.18
46 36 0.09
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (45 bp):
AGCAGATCTTGTCTTCCTATATTGGTCGTGAAGTAGATCGAAGAT
Found at i:7067035 original size:132 final size:132
Alignment explanation
Indices: 7066798--7067262 Score: 741
Period size: 132 Copynumber: 3.5 Consensus size: 132
7066788 GTCATTAAAG
*
7066798 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATT
7066863 GGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAA
66 GGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAA
7066928 AA
131 AA
* *
7066930 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGGAGGTAGCAGATCTTATCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATT
7066995 GGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAA
66 GGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAA
7067060 AA
131 AA
* *
7067062 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATATCAGATCCTATCTTCCTATATT
1 CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATT
* * * * * *
7067127 GGTAGGAAGTGGACCGACGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGGAAAA
66 GGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATC-GCAGA
7067192 AAA
130 AAA
*** * * * * *
7067195 CAGATCTTGTCTTCCCATATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAT
1 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATAT
7067260 TGG
65 TGG
7067263 CGTGAAGTAG
Statistics
Matches: 310, Mismatches: 21, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
132 247 0.80
133 26 0.08
134 37 0.12
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (132 bp):
CAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTATATT
GGTAGGAAGTAGATCGACGACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCAGAA
AA
Found at i:7067230 original size:178 final size:176
Alignment explanation
Indices: 7066797--7067562 Score: 695
Period size: 178 Copynumber: 4.3 Consensus size: 176
7066787 AGTCATTAAA
*** * * * *** * *
7066797 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATCTTATCTTCCTATAT
1 GCAGATCTTGTCTTCCCATACTGGTGGGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCCCATAT
* * * *** * * * *
7066862 TGGTAG-GAAGTAGATCGACG-ACGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGCA
66 TGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAA
* * * * * * * * * *
7066925 GAAAACAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGGA-GGT
130 GATATCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGA-CCGACGAT
* * * * ** *
7066972 AGCAGATCTTATCTTCCTATATTGGTAGGAAGTAGATCG-ACGACGCAGATCTTGTCTTCCCATA
1 -GCAGATCTTGTCTTCCCATACTGGTGGGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCCCATA
* * * *
7067036 CTGGTGGCGAAGTAGATCGCAGAAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAA
65 TTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAA
7067101 GATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACGAT
130 GATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACGAT
* *
7067148 GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGGAAAAAAACAGATCTTGTCTTCCCAT
1 GCAGATCTTGTCTTCCCATACTGGTGG-GAAGTAGATC-GAAAAAAGCAGATCTTGTCTTCCCAT
* *
7067213 ATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGGTCAA
64 ATTGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGA
7067278 AGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACGAT
129 AGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACGAT
* * * * * * * **
7067326 GCAGATTTTGTTTTCCCATACTGGTGGTGGAGAAGATCGAAGAAAGCAGATC--GACGATGGCGG
1 GCAGATCTTGTCTTCCCATACTGGTGG-GAAGTAGATCGAAAAAAGCAGATCTTGTC--T-TCCC
* ** ** *
7067389 ATTTTACCTCCCTGACTACAG-AGGAGTAC-AAGAAAGCAGATCTTGTCTTCATGTATTGGCATG
62 ATATT-GGT-GGTG---A-AGTA-GA-T-CGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTG
7067452 AAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACGAT
118 AAGTAGATCGAAGATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACGAT
* * * * *
7067511 GCAGATTTTGTTTTCCCATACTGGTGGTGGAGAAGATCGAAGAAAGCAGATC
1 GCAGATCTTGTCTTCCCATACTGGTGG-GAAGTAGATCGAAAAAAGCAGATC
7067563 GACGATGGCG
Statistics
Matches: 504, Mismatches: 67, Indels: 29
0.84 0.11 0.05
Matches are distributed among these distances:
175 54 0.11
176 98 0.19
177 35 0.07
178 164 0.33
179 1 0.00
180 2 0.00
183 2 0.00
184 4 0.01
185 143 0.28
186 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (176 bp):
GCAGATCTTGTCTTCCCATACTGGTGGGAAGTAGATCGAAAAAAGCAGATCTTGTCTTCCCATAT
TGGTGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAG
ATATCAGATCCTATCTTCCTATATTGGTAGGAAGTGGACCGACGAT
Found at i:7067485 original size:185 final size:185
Alignment explanation
Indices: 7067233--7067603 Score: 715
Period size: 185 Copynumber: 2.0 Consensus size: 185
7067223 AAGTAGATCG
* *
7067233 AAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGGTCAAAGATATCAGATCCTATCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATATCAGATCCTATCTTC
7067298 CTATATTGGTAGGAAGTGGACCGACGATGCAGATTTTGTTTTCCCATACTGGTGGTGGAGAAGAT
66 CTATATTGGTAGGAAGTGGACCGACGATGCAGATTTTGTTTTCCCATACTGGTGGTGGAGAAGAT
7067363 CGAAGAAAGCAGATCGACGATGGCGGATTTTACCTCCCTGACTACAGAGGAGTAC
131 CGAAGAAAGCAGATCGACGATGGCGGATTTTACCTCCCTGACTACAGAGGAGTAC
*
7067418 AAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCGAAGATATCAGATCCTATCTTC
1 AAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATATCAGATCCTATCTTC
7067483 CTATATTGGTAGGAAGTGGACCGACGATGCAGATTTTGTTTTCCCATACTGGTGGTGGAGAAGAT
66 CTATATTGGTAGGAAGTGGACCGACGATGCAGATTTTGTTTTCCCATACTGGTGGTGGAGAAGAT
7067548 CGAAGAAAGCAGATCGACGATGGCGGATTTTACCTCCCTGACTACAGAGGAGTAC
131 CGAAGAAAGCAGATCGACGATGGCGGATTTTACCTCCCTGACTACAGAGGAGTAC
7067603 A
1 A
7067604 TCGAAGCCGA
Statistics
Matches: 183, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
185 183 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (185 bp):
AAGAAAGCAGATCTTGTCTTCATGTATTGGCATGAAGTAGATCAAAGATATCAGATCCTATCTTC
CTATATTGGTAGGAAGTGGACCGACGATGCAGATTTTGTTTTCCCATACTGGTGGTGGAGAAGAT
CGAAGAAAGCAGATCGACGATGGCGGATTTTACCTCCCTGACTACAGAGGAGTAC
Found at i:7078949 original size:26 final size:25
Alignment explanation
Indices: 7078887--7078951 Score: 66
Period size: 26 Copynumber: 2.6 Consensus size: 25
7078877 TATGCTATTT
7078887 TAACCTTTTTGAA-TATATTTTGGA
1 TAACCTTTTTGAATTATATTTTGGA
7078911 TATA--TTTTATGAATTATTATTTAT-GA
1 TA-ACCTTTT-TGAATTA-TATTT-TGGA
7078937 TAACCTTTTTGAATT
1 TAACCTTTTTGAATT
7078952 TGTCAAGGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
23 4 0.12
24 6 0.18
25 4 0.12
26 15 0.44
27 5 0.15
ACGTcount: A:0.31, C:0.06, G:0.09, T:0.54
Consensus pattern (25 bp):
TAACCTTTTTGAATTATATTTTGGA
Found at i:7081722 original size:19 final size:19
Alignment explanation
Indices: 7081698--7081738 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
7081688 TAACTGAACT
7081698 ATGAACACGCCTAGTTCCC
1 ATGAACACGCCTAGTTCCC
7081717 ATGAACACGCCTAGTTCCC
1 ATGAACACGCCTAGTTCCC
7081736 ATG
1 ATG
7081739 TGTGAAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.27, C:0.34, G:0.17, T:0.22
Consensus pattern (19 bp):
ATGAACACGCCTAGTTCCC
Found at i:7083100 original size:31 final size:31
Alignment explanation
Indices: 7083007--7083102 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
7082997 GGCAAATTAC
*
7083007 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
7083038 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
7083070 AAGAGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
7083101 AA
1 AA
7083103 ATTATCTAAG
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:7085485 original size:21 final size:22
Alignment explanation
Indices: 7085461--7085509 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 22
7085451 ATAATTACGT
7085461 TTATTTTCTTTAAATT-AAGAG
1 TTATTTTCTTTAAATTCAAGAG
* * *
7085482 TTATTTTTTTTAACTTCATGAG
1 TTATTTTCTTTAAATTCAAGAG
7085504 TTATTT
1 TTATTT
7085510 AGTATTTTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.59
Consensus pattern (22 bp):
TTATTTTCTTTAAATTCAAGAG
Found at i:7088977 original size:17 final size:17
Alignment explanation
Indices: 7088957--7088993 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7088947 AATTTTTGAA
7088957 TTAGTGAATTCTGTGAT
1 TTAGTGAATTCTGTGAT
* *
7088974 TTAGTGAATTTTGTGGT
1 TTAGTGAATTCTGTGAT
7088991 TTA
1 TTA
7088994 AAAAGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.03, G:0.24, T:0.51
Consensus pattern (17 bp):
TTAGTGAATTCTGTGAT
Found at i:7089664 original size:26 final size:26
Alignment explanation
Indices: 7089635--7089688 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
7089625 AATTACAAAT
7089635 AATT-TAATAAATAAAAATAAAAATAA
1 AATTCTAA-AAATAAAAATAAAAATAA
* * *
7089661 AATTCTAAAACTAAAACTAAAACTAA
1 AATTCTAAAAATAAAAATAAAAATAA
7089687 AA
1 AA
7089689 CTAAAGTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (26 bp):
AATTCTAAAAATAAAAATAAAAATAA
Found at i:7089674 original size:6 final size:6
Alignment explanation
Indices: 7089646--7089693 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
7089636 ATTTAATAAA
* *
7089646 TAAAAA TAAAAA TAAAATTC TAAAAC TAAAAC TAAAAC TAAAAC TAAA
1 TAAAAC TAAAAC TAAAA--C TAAAAC TAAAAC TAAAAC TAAAAC TAAA
7089694 GTCTAAAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
6 34 0.87
8 5 0.13
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (6 bp):
TAAAAC
Found at i:7089688 original size:18 final size:19
Alignment explanation
Indices: 7089646--7089693 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
7089636 ATTTAATAAA
*
7089646 TAAAAATAAAAATAAAATTC
1 TAAAACTAAAAATAAAA-TC
*
7089666 TAAAACTAAAACTAAAA-C
1 TAAAACTAAAAATAAAATC
7089684 TAAAACTAAA
1 TAAAACTAAA
7089694 GTCTAAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
20 15 0.58
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (19 bp):
TAAAACTAAAAATAAAATC
Found at i:7089747 original size:9 final size:9
Alignment explanation
Indices: 7089733--7089853 Score: 163
Period size: 9 Copynumber: 13.4 Consensus size: 9
7089723 GTAGTGATTC
7089733 AATTCGGTT
1 AATTCGGTT
7089742 AATTCGGTT
1 AATTCGGTT
*
7089751 AATTCGGGT
1 AATTCGGTT
*
7089760 AATCCGGTT
1 AATTCGGTT
7089769 AATTCGGTT
1 AATTCGGTT
*
7089778 AATTCGGGT
1 AATTCGGTT
7089787 AATTCGGTT
1 AATTCGGTT
*
7089796 AATTCGGGT
1 AATTCGGTT
7089805 AA-TCTGGTT
1 AATTC-GGTT
7089814 AATTCGGTT
1 AATTCGGTT
** *
7089823 AACCCGATT
1 AATTCGGTT
7089832 AATTCGGTT
1 AATTCGGTT
7089841 AATTCGGTT
1 AATTCGGTT
7089850 AATT
1 AATT
7089854 TTTAACCAAG
Statistics
Matches: 96, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
8 2 0.02
9 92 0.96
10 2 0.02
ACGTcount: A:0.24, C:0.13, G:0.23, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:7091005 original size:17 final size:17
Alignment explanation
Indices: 7090985--7091021 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7090975 AATTTTTGAA
7090985 TTAGTGAATTCTGTGAT
1 TTAGTGAATTCTGTGAT
* *
7091002 TTAGTGAATTTTGTGGT
1 TTAGTGAATTCTGTGAT
7091019 TTA
1 TTA
7091022 AAAAGAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.22, C:0.03, G:0.24, T:0.51
Consensus pattern (17 bp):
TTAGTGAATTCTGTGAT
Found at i:7091692 original size:26 final size:26
Alignment explanation
Indices: 7091663--7091716 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
7091653 AATTACAAAT
7091663 AATT-TAATAAATAAAAATAAAAATAA
1 AATTCTAA-AAATAAAAATAAAAATAA
* * *
7091689 AATTCTAAAACTAAAACTAAAACTAA
1 AATTCTAAAAATAAAAATAAAAATAA
7091715 AA
1 AA
7091717 CTAAAGTCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 21 0.88
27 3 0.12
ACGTcount: A:0.69, C:0.07, G:0.00, T:0.24
Consensus pattern (26 bp):
AATTCTAAAAATAAAAATAAAAATAA
Found at i:7091702 original size:6 final size:6
Alignment explanation
Indices: 7091674--7091721 Score: 60
Period size: 6 Copynumber: 7.7 Consensus size: 6
7091664 ATTTAATAAA
* *
7091674 TAAAAA TAAAAA TAAAATTC TAAAAC TAAAAC TAAAAC TAAAAC TAAA
1 TAAAAC TAAAAC TAAAA--C TAAAAC TAAAAC TAAAAC TAAAAC TAAA
7091722 GTCTAAAAGT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
6 34 0.87
8 5 0.13
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (6 bp):
TAAAAC
Found at i:7091716 original size:18 final size:19
Alignment explanation
Indices: 7091674--7091721 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 19
7091664 ATTTAATAAA
*
7091674 TAAAAATAAAAATAAAATTC
1 TAAAACTAAAAATAAAA-TC
*
7091694 TAAAACTAAAACTAAAA-C
1 TAAAACTAAAAATAAAATC
7091712 TAAAACTAAA
1 TAAAACTAAA
7091722 GTCTAAAAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
18 11 0.42
20 15 0.58
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (19 bp):
TAAAACTAAAAATAAAATC
Found at i:7091775 original size:9 final size:9
Alignment explanation
Indices: 7091761--7091836 Score: 125
Period size: 9 Copynumber: 8.4 Consensus size: 9
7091751 GTAGTGATTC
7091761 AATTCGGTT
1 AATTCGGTT
7091770 AATTCGGTT
1 AATTCGGTT
*
7091779 AATTCGGGT
1 AATTCGGTT
*
7091788 AATCCGGTT
1 AATTCGGTT
7091797 AATTCGGTT
1 AATTCGGTT
*
7091806 AATTCGGGT
1 AATTCGGTT
7091815 AATTCGGTT
1 AATTCGGTT
7091824 AATTCGGTT
1 AATTCGGTT
7091833 AATT
1 AATT
7091837 TTTAACCAAA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 61 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:7092014 original size:12 final size:12
Alignment explanation
Indices: 7091997--7092021 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7091987 TGTTATTTCG
7091997 GGTCGGTTAACC
1 GGTCGGTTAACC
7092009 GGTCGGTTAACC
1 GGTCGGTTAACC
7092021 G
1 G
7092022 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:7092463 original size:46 final size:45
Alignment explanation
Indices: 7092387--7092617 Score: 291
Period size: 46 Copynumber: 5.0 Consensus size: 45
7092377 TGGCAAAGTG
* * *
7092387 TGAAAATTAGGTATGGTATTTCGATAAAGAAAACTATATTGAGTTA
1 TGAAAAGTAGGTATGGTATTTCG-TGAAGAAAACCATATTGAGTTA
* *
7092433 TGAAAAGTAGGTATGGTATTCCAGTGAAGAAAACCATATTGAGTTG
1 TGAAAAGTAGGTATGGTATTTC-GTGAAGAAAACCATATTGAGTTA
* * * * *
7092479 TAAAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTAAGTTG
1 TGAAAAGTAGGTATGGTATTTC-GTGAAGAAAACCATATTGAGTTA
* *
7092525 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATATTGAGTTC
1 TGAAAAGTAGGTATGGTATTTC-GTGAAGAAAACCATATTGAGTTA
* *
7092571 TGAAAAGTAGGTATGGTAATTCCGTGAAGAAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGT-ATTTCGTGAAGAAAACCATATTGAGTTA
7092617 T
1 T
7092618 AGCCTTGTGA
Statistics
Matches: 161, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
46 157 0.98
47 4 0.02
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (45 bp):
TGAAAAGTAGGTATGGTATTTCGTGAAGAAAACCATATTGAGTTA
Found at i:7092511 original size:92 final size:92
Alignment explanation
Indices: 7092389--7092617 Score: 341
Period size: 92 Copynumber: 2.5 Consensus size: 92
7092379 GCAAAGTGTG
* * * *
7092389 AAAATTAGGTATGGTATTTCGATAAAGAAAACTATATTGAGTTATGAAAAGTAGGTATGGTATTC
1 AAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGTTATGAAAAGTAGGTATGGTATTC
*
7092454 CAGTGAAGAAAACCATATTGAGTTGTA
66 CAGTGAAGAAAACCATATTGAGTTCTA
* * * *
7092481 AAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTAAGTTGTGAAAAGTAGGTATGGTGTTT
1 AAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGTTATGAAAAGTAGGTATGGTATTC
*
7092546 CAGTGAAGAAAACCATATTGAGTTCTG
66 CAGTGAAGAAAACCATATTGAGTTCTA
* * *
7092573 AAAAGTAGGTATGGTAATTCCGTGAAGAAAACCATACTGAGTTAT
1 AAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGTTAT
7092618 AGCCTTGTGA
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
92 122 1.00
ACGTcount: A:0.39, C:0.08, G:0.23, T:0.30
Consensus pattern (92 bp):
AAAAGTAGGTATGGTATTTCGGTAAAGAAAACCATACTGAGTTATGAAAAGTAGGTATGGTATTC
CAGTGAAGAAAACCATATTGAGTTCTA
Found at i:7110699 original size:3 final size:3
Alignment explanation
Indices: 7110691--7110715 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
7110681 AATTTTTATC
7110691 TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA T
7110716 TGAAACGGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:7121871 original size:33 final size:33
Alignment explanation
Indices: 7121829--7121915 Score: 129
Period size: 33 Copynumber: 2.6 Consensus size: 33
7121819 GAAGAGGGAT
* *
7121829 TAACAGGTATAGAAGATGAAGGTGAAATAGAGG
1 TAACAGGTATAGAAGGTGAAGGAGAAATAGAGG
* * *
7121862 TAACTGGTATAGAGGGTGAAGGAGATATAGAGG
1 TAACAGGTATAGAAGGTGAAGGAGAAATAGAGG
7121895 TAACAGGTATAGAAGGTGAAG
1 TAACAGGTATAGAAGGTGAAG
7121916 CTACAGGCTC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.41, C:0.03, G:0.36, T:0.20
Consensus pattern (33 bp):
TAACAGGTATAGAAGGTGAAGGAGAAATAGAGG
Found at i:7121875 original size:15 final size:15
Alignment explanation
Indices: 7121855--7121907 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
7121845 TGAAGGTGAA
*
7121855 ATAGAGGTAACTGGT
1 ATAGAGGTAACAGGT
* *
7121870 ATAGAGGGTGAAGGAGAT
1 ATAGA-GGT-AA-CAGGT
7121888 ATAGAGGTAACAGGT
1 ATAGAGGTAACAGGT
7121903 ATAGA
1 ATAGA
7121908 AGGTGAAGCT
Statistics
Matches: 30, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
15 13 0.43
16 5 0.17
17 5 0.17
18 7 0.23
ACGTcount: A:0.40, C:0.04, G:0.36, T:0.21
Consensus pattern (15 bp):
ATAGAGGTAACAGGT
Found at i:7126850 original size:11 final size:12
Alignment explanation
Indices: 7126827--7126855 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
7126817 TATTTGATTG
7126827 TAATATCAATAA
1 TAATATCAATAA
7126839 TAATAT-AATAA
1 TAATATCAATAA
7126850 TAATAT
1 TAATAT
7126856 TATTAATTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (12 bp):
TAATATCAATAA
Found at i:7126862 original size:23 final size:23
Alignment explanation
Indices: 7126827--7126875 Score: 55
Period size: 23 Copynumber: 2.1 Consensus size: 23
7126817 TATTTGATTG
*
7126827 TAATATCAATAA-TAATATAATAA
1 TAATATCAATAATTAAT-TAAAAA
* *
7126850 TAATATTATTAATTAATTAAAAA
1 TAATATCAATAATTAATTAAAAA
7126873 TAA
1 TAA
7126876 AATAGCAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 18 0.82
24 4 0.18
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (23 bp):
TAATATCAATAATTAATTAAAAA
Found at i:7128678 original size:21 final size:20
Alignment explanation
Indices: 7128649--7128687 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
7128639 TTAACAAGAT
7128649 TGTTGATATAATATCATTTTA
1 TGTTGATATAATAT-ATTTTA
* *
7128670 TGTTTATATATTATATTT
1 TGTTGATATAATATATTT
7128688 ATTCAATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.31, C:0.03, G:0.08, T:0.59
Consensus pattern (20 bp):
TGTTGATATAATATATTTTA
Found at i:7128847 original size:29 final size:27
Alignment explanation
Indices: 7128781--7128847 Score: 62
Period size: 31 Copynumber: 2.3 Consensus size: 27
7128771 GTGTTTCACG
* *
7128781 TGTATAATTGCATCAAATTAAAGTTCA
1 TGTATAATTGCATCAAATCAAAATTCA
* *
7128808 TGTATACAATTGTACATTAAATCAAAATTTA
1 TGTAT--AATTG--CATCAAATCAAAATTCA
7128839 TGTATAATT
1 TGTATAATT
7128848 TTAAGATTTG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
27 5 0.16
29 9 0.28
31 18 0.56
ACGTcount: A:0.42, C:0.09, G:0.09, T:0.40
Consensus pattern (27 bp):
TGTATAATTGCATCAAATCAAAATTCA
Found at i:7130493 original size:11 final size:11
Alignment explanation
Indices: 7130479--7130511 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
7130469 TTTCTTTTTT
7130479 TTTGTTATATA
1 TTTGTTATATA
7130490 TTTGTTATATA
1 TTTGTTATATA
*
7130501 TATG-TATATA
1 TTTGTTATATA
7130511 T
1 T
7130512 AGTTTTTAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.61
Consensus pattern (11 bp):
TTTGTTATATA
Found at i:7134496 original size:17 final size:17
Alignment explanation
Indices: 7134474--7134509 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7134464 TGGCCATTAA
7134474 AATTATAATT-ATAGATT
1 AATTATAATTGATA-ATT
7134491 AATTATAATTGATAATT
1 AATTATAATTGATAATT
7134508 AA
1 AA
7134510 GTGAATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
AATTATAATTGATAATT
Found at i:7138007 original size:25 final size:25
Alignment explanation
Indices: 7137946--7138007 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
7137936 TATAAAAAAT
* * *
7137946 ATATCAAATAAAAATTTTAAGTATCA
1 ATATTAAA-AAAAATGTTAAGTATAA
*
7137972 A-ATTAAGAAAAAATGTTAAGTTTAA
1 ATATTAA-AAAAAATGTTAAGTATAA
7137997 ATATTAAAAAA
1 ATATTAAAAAA
7138008 TATTATCGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
25 23 0.77
26 7 0.23
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.32
Consensus pattern (25 bp):
ATATTAAAAAAAATGTTAAGTATAA
Found at i:7141599 original size:6 final size:6
Alignment explanation
Indices: 7141590--7141623 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7141580 CAAAAAAAAA
*
7141590 AACAAG AACATG AACATG AACATG AACATG AACA
1 AACATG AACATG AACATG AACATG AACATG AACA
7141624 AACATGGCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.56, C:0.18, G:0.15, T:0.12
Consensus pattern (6 bp):
AACATG
Found at i:7141870 original size:19 final size:20
Alignment explanation
Indices: 7141831--7141870 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
7141821 AAATCAGAAT
*
7141831 TAAATTATTATTTTTTAGAC
1 TAAATTATTAATTTTTAGAC
*
7141851 TAAATTA-TAATTTTTGGAC
1 TAAATTATTAATTTTTAGAC
7141870 T
1 T
7141871 TACGCAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.35, C:0.05, G:0.07, T:0.53
Consensus pattern (20 bp):
TAAATTATTAATTTTTAGAC
Found at i:7146201 original size:17 final size:17
Alignment explanation
Indices: 7146179--7146214 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
7146169 CGGCCATTAA
7146179 AATTATAATT-ATAGATT
1 AATTATAATTGATA-ATT
7146196 AATTATAATTGATAATT
1 AATTATAATTGATAATT
7146213 AA
1 AA
7146215 GTGAATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
AATTATAATTGATAATT
Found at i:7149340 original size:40 final size:40
Alignment explanation
Indices: 7149285--7149366 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
7149275 GGTAGTCCAA
7149285 TTAAGTTCACTCAATAAAAAGTGACCCAAATTCAATTTTT
1 TTAAGTTCACTCAATAAAAAGTGACCCAAATTCAATTTTT
7149325 TTAAGTTCACTCAATAAAAAGTGACCCAAATTCAATTTTT
1 TTAAGTTCACTCAATAAAAAGTGACCCAAATTCAATTTTT
7149365 TT
1 TT
7149367 TTCTAAATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.39, C:0.17, G:0.07, T:0.37
Consensus pattern (40 bp):
TTAAGTTCACTCAATAAAAAGTGACCCAAATTCAATTTTT
Found at i:7149687 original size:27 final size:26
Alignment explanation
Indices: 7149652--7149736 Score: 91
Period size: 31 Copynumber: 3.1 Consensus size: 26
7149642 TTGATATATA
7149652 TTTTTAATTTGATACTTAATTTGTTT
1 TTTTTAATTTGATACTTAATTTGTTT
*
7149678 TTTTTCAATTTGAAACTTAAATTTGACTCTT
1 TTTTT-AATTTGATACTT-AATTTG--T-TT
*
7149709 TTTCTTAATTTGATACCTAATTT-TTT
1 TTT-TTAATTTGATACTTAATTTGTTT
7149735 TT
1 TT
7149737 AACAAAAATA
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
26 9 0.18
27 12 0.24
28 6 0.12
30 6 0.12
31 15 0.30
32 2 0.04
ACGTcount: A:0.25, C:0.09, G:0.06, T:0.60
Consensus pattern (26 bp):
TTTTTAATTTGATACTTAATTTGTTT
Found at i:7153861 original size:15 final size:15
Alignment explanation
Indices: 7153841--7153918 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
7153831 TTTATGGAAA
7153841 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
7153856 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
7153870 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
7153886 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
7153900 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
7153916 ATC
1 ATC
7153919 GAGATATTGG
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
14 8 0.17
15 31 0.66
16 8 0.17
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:7153869 original size:30 final size:30
Alignment explanation
Indices: 7153835--7153928 Score: 161
Period size: 30 Copynumber: 3.1 Consensus size: 30
7153825 TCCATATTTA
*
7153835 TGGAAAATCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
7153865 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
*
7153895 TGGAAAGTCAAAGATATGGGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
7153926 TGG
1 TGG
7153929 CATAATAAAA
Statistics
Matches: 61, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
30 53 0.87
31 8 0.13
ACGTcount: A:0.41, C:0.06, G:0.26, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:7158272 original size:15 final size:15
Alignment explanation
Indices: 7158252--7158299 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
7158242 TTGTGCGGGA
7158252 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
7158267 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
7158281 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
7158297 ATC
1 ATC
7158300 GAGATATTGG
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
14 4 0.16
15 17 0.68
16 4 0.16
ACGTcount: A:0.42, C:0.08, G:0.23, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:7165743 original size:24 final size:24
Alignment explanation
Indices: 7165705--7165752 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7165695 TATTTATTAG
*
7165705 TATTTATTAGTATAATATATTTAA
1 TATTTATTAGTATAAAATATTTAA
*
7165729 TATTTATTA-TCATAAAATCTTTAA
1 TATTTATTAGT-ATAAAATATTTAA
7165753 AGCTTTAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.42, C:0.04, G:0.02, T:0.52
Consensus pattern (24 bp):
TATTTATTAGTATAAAATATTTAA
Found at i:7167903 original size:24 final size:24
Alignment explanation
Indices: 7167876--7168006 Score: 172
Period size: 24 Copynumber: 5.5 Consensus size: 24
7167866 AAAGACTGCT
*
7167876 GGGATGCCTCCCAACAACATGGGA
1 GGGATGCCACCCAACAACATGGGA
**
7167900 GGGATGCCACCCCGCAACATGGGA
1 GGGATGCCACCCAACAACATGGGA
* * *
7167924 GGGATGCCTCCCCAGAACATGGGA
1 GGGATGCCACCCAACAACATGGGA
7167948 GGGATGCCACCCAACAACATGGGA
1 GGGATGCCACCCAACAACATGGGA
* *
7167972 AGGATGCCACCCAACAATATGGGA
1 GGGATGCCACCCAACAACATGGGA
* *
7167996 GGAATGACACC
1 GGGATGCCACC
7168007 GAATCAAGGA
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 93 1.00
ACGTcount: A:0.31, C:0.29, G:0.30, T:0.11
Consensus pattern (24 bp):
GGGATGCCACCCAACAACATGGGA
Found at i:7179013 original size:25 final size:26
Alignment explanation
Indices: 7178983--7179033 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
7178973 TATTTTTATT
*
7178983 TTTTTA-TAATTAAATCTGAATATAA
1 TTTTTATTAATTAAATCTAAATATAA
* *
7179008 TTTTTATTATTTAAATTTAAATATAA
1 TTTTTATTAATTAAATCTAAATATAA
7179034 AATTAACTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (26 bp):
TTTTTATTAATTAAATCTAAATATAA
Found at i:7179028 original size:32 final size:32
Alignment explanation
Indices: 7178962--7179029 Score: 79
Period size: 32 Copynumber: 2.1 Consensus size: 32
7178952 AAAGTATTAA
*
7178962 AAATCTAATTATATTTTTATTTTTTTATAATT
1 AAATCTAATTATATTTTTATTTATTTATAATT
7178994 AAATCTGAA-TATAATTTTTA-TTATTTA-AATTT
1 AAATCT-AATTAT-ATTTTTATTTATTTATAA-TT
7179026 AAAT
1 AAAT
7179030 ATAAAATTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
31 2 0.06
32 21 0.66
33 9 0.28
ACGTcount: A:0.40, C:0.03, G:0.01, T:0.56
Consensus pattern (32 bp):
AAATCTAATTATATTTTTATTTATTTATAATT
Found at i:7182179 original size:159 final size:159
Alignment explanation
Indices: 7181890--7182236 Score: 624
Period size: 159 Copynumber: 2.2 Consensus size: 159
7181880 AGTATCCGTG
* *
7181890 ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTTACTCTGCACTGAGTTCGTTA
1 ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTCACTCGGCACTGAGTTCGTTA
* *
7181955 GATCTGTTTGATTCTGACCTGGTACACTTGATTGAAATTGCCCAGTATGCTGAGAGTTCGAGTGA
66 GATCTGTTTGACTCTGACCTGCTACACTTGATTGAAATTGCCCAGTATGCTGAGAGTTCGAGTGA
7182020 TGAATCAGAGTCTGGTACTGACGTGTTTC
131 TGAATCAGAGTCTGGTACTGACGTGTTTC
7182049 ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTCACTCGGCACTGAGTTCGTTA
1 ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTCACTCGGCACTGAGTTCGTTA
*
7182114 GATCTGTTTGACTCTGACCTGCTACA-TTCGATTGAAATTGCCCAGTATGCTGAGAGTTTGAGTG
66 GATCTGTTTGACTCTGACCTGCTACACTT-GATTGAAATTGCCCAGTATGCTGAGAGTTCGAGTG
*
7182178 ATGAATCAGAGTCTGGTTCTGACGTGTTTC
130 ATGAATCAGAGTCTGGTACTGACGTGTTTC
7182208 ATTCAATTGAGGTTGGCTTGTTGGTTGAG
1 ATTCAATTGAGGTTGGCTTGTTGGTTGAG
7182237 TATGTTCCCT
Statistics
Matches: 181, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
158 2 0.01
159 179 0.99
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.35
Consensus pattern (159 bp):
ATTCAATTGAGGTTGGCTTGTTGGTTGAGGATGCACCAAGCTGTCACTCGGCACTGAGTTCGTTA
GATCTGTTTGACTCTGACCTGCTACACTTGATTGAAATTGCCCAGTATGCTGAGAGTTCGAGTGA
TGAATCAGAGTCTGGTACTGACGTGTTTC
Found at i:7187781 original size:21 final size:22
Alignment explanation
Indices: 7187757--7187803 Score: 87
Period size: 21 Copynumber: 2.2 Consensus size: 22
7187747 AGCTTTTGGT
7187757 TTTTAGCTCACTTTCCAAGTC-
1 TTTTAGCTCACTTTCCAAGTCG
7187778 TTTTAGCTCACTTTCCAAGTCG
1 TTTTAGCTCACTTTCCAAGTCG
7187800 TTTT
1 TTTT
7187804 TTCCCCCAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 21 0.84
22 4 0.16
ACGTcount: A:0.17, C:0.26, G:0.11, T:0.47
Consensus pattern (22 bp):
TTTTAGCTCACTTTCCAAGTCG
Found at i:7197100 original size:24 final size:24
Alignment explanation
Indices: 7197055--7197134 Score: 97
Period size: 24 Copynumber: 3.3 Consensus size: 24
7197045 ACCAGTCAAC
** *
7197055 CCACCATAAACAGTTGAACCTGGT
1 CCACCATAGCCAGCTGAACCTGGT
* *
7197079 CCGCCATAGCCAGCTGATCCTGGT
1 CCACCATAGCCAGCTGAACCTGGT
* *
7197103 CCACCATAGCCAGTTGAACCTTGT
1 CCACCATAGCCAGCTGAACCTGGT
7197127 CCACCATA
1 CCACCATA
7197135 CCCACCATAC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 47 1.00
ACGTcount: A:0.26, C:0.35, G:0.17, T:0.21
Consensus pattern (24 bp):
CCACCATAGCCAGCTGAACCTGGT
Found at i:7199641 original size:24 final size:24
Alignment explanation
Indices: 7199596--7199672 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
7199586 ACCAGTCAAC
*
7199596 CCACCATAAACAGTTGAACCTGGT
1 CCACCATAACCAGTTGAACCTGGT
* * *
7199620 CCGCCATAACCAGCTGATCCTGGT
1 CCACCATAACCAGTTGAACCTGGT
*
7199644 CCACCATAGCCAGTTGAACCTGGT
1 CCACCATAACCAGTTGAACCTGGT
7199668 CCACC
1 CCACC
7199673 GTACCCACCA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.26, C:0.36, G:0.18, T:0.19
Consensus pattern (24 bp):
CCACCATAACCAGTTGAACCTGGT
Found at i:7201119 original size:25 final size:25
Alignment explanation
Indices: 7201055--7201119 Score: 62
Period size: 25 Copynumber: 2.6 Consensus size: 25
7201045 TAAAGAAATA
* *
7201055 AATATATCAATTTATTTTTATATTG
1 AATATATAAATTTATTTATATATTG
* *
7201080 AATAAATATAA-TTATTTATGTATCT-
1 AATATATA-AATTTATTTATATAT-TG
7201105 AATATATAAATTTAT
1 AATATATAAATTTAT
7201120 AATGATGTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
24 2 0.06
25 27 0.84
26 3 0.09
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (25 bp):
AATATATAAATTTATTTATATATTG
Found at i:7205902 original size:22 final size:22
Alignment explanation
Indices: 7205877--7205921 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
7205867 AAAAAAATAA
7205877 GAAAATAACAGCAAAACAGTGG
1 GAAAATAACAGCAAAACAGTGG
* *
7205899 GAAAATAGCAGCAAAGCAGTGG
1 GAAAATAACAGCAAAACAGTGG
7205921 G
1 G
7205922 TTTTTTTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.13, G:0.29, T:0.09
Consensus pattern (22 bp):
GAAAATAACAGCAAAACAGTGG
Found at i:7212500 original size:17 final size:17
Alignment explanation
Indices: 7212464--7212496 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7212454 ATTTAAATGA
7212464 AACTGCATACATATTAC
1 AACTGCATACATATTAC
*
7212481 AACT-CATACGTATTAC
1 AACTGCATACATATTAC
7212497 CAACAACAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.39, C:0.24, G:0.06, T:0.30
Consensus pattern (17 bp):
AACTGCATACATATTAC
Found at i:7217247 original size:40 final size:40
Alignment explanation
Indices: 7217203--7217281 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
7217193 CTAATTTATA
7217203 CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGAT
1 CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGAT
7217243 CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGA
1 CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGA
7217282 CCTTTATTAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.42
Consensus pattern (40 bp):
CTCTATTTTCTGAGCAAGAAGACTATCCTTTTATCTTGAT
Found at i:7217496 original size:15 final size:16
Alignment explanation
Indices: 7217476--7217507 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
7217466 TACTAGATAG
7217476 ATATGAAATAA-TATA
1 ATATGAAATAAGTATA
7217491 ATATGAAATAAGTATA
1 ATATGAAATAAGTATA
7217507 A
1 A
7217508 AGTTTAAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (16 bp):
ATATGAAATAAGTATA
Found at i:7221679 original size:21 final size:22
Alignment explanation
Indices: 7221646--7221687 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
7221636 GATGAGGGTA
*
7221646 AAAAAATTGTATAAT-AAAATTT
1 AAAAAATTATAT-ATGAAAATTT
7221668 AAAAAA-TATATATGAAAATT
1 AAAAAATTATATATGAAAATT
7221688 AAATGTAGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 2 0.11
21 10 0.56
22 6 0.33
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (22 bp):
AAAAAATTATATATGAAAATTT
Found at i:7221940 original size:9 final size:9
Alignment explanation
Indices: 7221928--7221964 Score: 51
Period size: 8 Copynumber: 4.3 Consensus size: 9
7221918 TAATATATTC
7221928 TTTTATAAT
1 TTTTATAAT
7221937 TTTTA-AAT
1 TTTTATAAT
*
7221945 TTTTTTAAT
1 TTTTATAAT
7221954 TTTT-TAAT
1 TTTTATAAT
7221962 TTT
1 TTT
7221965 AGATTGTGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
8 14 0.54
9 12 0.46
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (9 bp):
TTTTATAAT
Found at i:7221953 original size:17 final size:17
Alignment explanation
Indices: 7221928--7221964 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7221918 TAATATATTC
7221928 TTTTATAATTTTTAAAT
1 TTTTATAATTTTTAAAT
* *
7221945 TTTTTTAATTTTTTAAT
1 TTTTATAATTTTTAAAT
7221962 TTT
1 TTT
7221965 AGATTGTGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATAATTTTTAAAT
Found at i:7222260 original size:21 final size:22
Alignment explanation
Indices: 7222221--7222261 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7222211 CAATTTTTTT
*
7222221 CATTTTTAATTATTGATTTAAG
1 CATTTTAAATTATTGATTTAAG
*
7222243 CATTTTAAATT-TTTATTTA
1 CATTTTAAATTATTGATTTA
7222262 TGTTTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (22 bp):
CATTTTAAATTATTGATTTAAG
Found at i:7224513 original size:13 final size:14
Alignment explanation
Indices: 7224492--7224520 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7224482 GTTGATTAAA
7224492 AATTAAAATTAACT
1 AATTAAAATTAACT
7224506 AATT-AAATTAACT
1 AATTAAAATTAACT
7224519 AA
1 AA
7224521 AGAAAGAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAAATTAACT
Found at i:7225353 original size:15 final size:15
Alignment explanation
Indices: 7225333--7225362 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
7225323 AAATCTACAC
7225333 AGTCTAGCACATGGT
1 AGTCTAGCACATGGT
7225348 AGTCTAGCACATGGT
1 AGTCTAGCACATGGT
7225363 CATGTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (15 bp):
AGTCTAGCACATGGT
Found at i:7242413 original size:26 final size:27
Alignment explanation
Indices: 7242363--7242413 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
7242353 AACCATTTTT
**
7242363 TAAAAAGAATAAAAATTAGTTGTCGAC
1 TAAAAAGAATAAAAATTAGGAGTCGAC
*
7242390 TAAAAA-AATAAAAATTGGGAGTCG
1 TAAAAAGAATAAAAATTAGGAGTCG
7242414 CCACCAATCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 15 0.71
27 6 0.29
ACGTcount: A:0.53, C:0.06, G:0.18, T:0.24
Consensus pattern (27 bp):
TAAAAAGAATAAAAATTAGGAGTCGAC
Found at i:7245395 original size:30 final size:33
Alignment explanation
Indices: 7245361--7245421 Score: 92
Period size: 30 Copynumber: 1.9 Consensus size: 33
7245351 ATAGCTACAC
7245361 ATAAATATT-AAAAACTT-AATTAAA-AATTAT
1 ATAAATATTCAAAAACTTAAATTAAACAATTAT
*
7245391 ATAAATATTCAAAAAGTTAAATTAAACAATT
1 ATAAATATTCAAAAACTTAAATTAAACAATT
7245422 CCAATAGTTC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 9 0.33
31 7 0.26
32 7 0.26
33 4 0.15
ACGTcount: A:0.59, C:0.05, G:0.02, T:0.34
Consensus pattern (33 bp):
ATAAATATTCAAAAACTTAAATTAAACAATTAT
Found at i:7247001 original size:59 final size:57
Alignment explanation
Indices: 7246896--7247052 Score: 138
Period size: 58 Copynumber: 2.7 Consensus size: 57
7246886 ATCAAAGTTT
* * * * * * *
7246896 ACCTCCAAAGTTTATACATTTTATTAATTTGATTCAAAATCTAAAAATTGAATAAATTTA
1 ACCT-CAAAGTTTATAAAATTTA-TCATTTAATTCTAATTCTAAAAA-TCAATAAATTTA
*
7246956 GCC-CTAAAGTTTATAAAATTTATCATTTAATTCTAATTCTAAAAAATCAATAAATTTA
1 ACCTC-AAAGTTTATAAAATTTATCATTTAATTCTAATTCT-AAAAATCAATAAATTTA
* * *
7247014 ATCTCAACA-TTTACAAAATTTGTCAATTTAATTCTAATT
1 ACCTCAA-AGTTTATAAAATTTATC-ATTTAATTCTAATT
7247053 TTATTGGTAT
Statistics
Matches: 80, Mismatches: 12, Indels: 11
0.78 0.12 0.11
Matches are distributed among these distances:
58 42 0.52
59 36 0.45
60 2 0.03
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.41
Consensus pattern (57 bp):
ACCTCAAAGTTTATAAAATTTATCATTTAATTCTAATTCTAAAAATCAATAAATTTA
Found at i:7270480 original size:16 final size:16
Alignment explanation
Indices: 7270461--7270519 Score: 59
Period size: 16 Copynumber: 3.8 Consensus size: 16
7270451 AGTGAAATAA
7270461 AATTCGAGTTAAGTCG
1 AATTCGAGTTAAGTCG
* * *
7270477 AATT-GAGTGAA-ACC
1 AATTCGAGTTAAGTCG
*
7270491 ATATTCGAGTTAAGTTG
1 A-ATTCGAGTTAAGTCG
7270508 AATTCGAGTTAA
1 AATTCGAGTTAA
7270520 ATTAAAAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
14 2 0.06
15 9 0.27
16 21 0.64
17 1 0.03
ACGTcount: A:0.36, C:0.10, G:0.22, T:0.32
Consensus pattern (16 bp):
AATTCGAGTTAAGTCG
Found at i:7270483 original size:31 final size:31
Alignment explanation
Indices: 7270443--7270526 Score: 96
Period size: 31 Copynumber: 2.6 Consensus size: 31
7270433 TTTTTTCAAA
*
7270443 TCGATTTGAGTGAAATAAAATTCGAGTTAAG
1 TCGAATTGAGTGAAATAAAATTCGAGTTAAG
** *
7270474 TCGAATTGAGTGAAACCATATTCGAGTTAAG
1 TCGAATTGAGTGAAATAAAATTCGAGTTAAG
* *
7270505 TTGAATTCGAGTTAAATTAAAA
1 TCGAATT-GAGTGAAA-TAAAA
7270527 AAAATTAAAC
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
31 33 0.79
32 7 0.17
33 2 0.05
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.32
Consensus pattern (31 bp):
TCGAATTGAGTGAAATAAAATTCGAGTTAAG
Found at i:7270783 original size:46 final size:45
Alignment explanation
Indices: 7270700--7270793 Score: 120
Period size: 47 Copynumber: 2.1 Consensus size: 45
7270690 AAGATTATTA
* * *
7270700 TTTTAGAATATTTTAAAATTTAAACTTTTTTATATATTTTTAGAATT
1 TTTTAGAATATTTTAAAATATAAACTTTTGTAAATA-TTTT-GAATT
7270747 TTTTAGAAT-TTTTAAAAATATAAA-TTTTGTAAATATTTTGAATT
1 TTTTAGAATATTTT-AAAATATAAACTTTTGTAAATATTTTGAATT
7270791 TTT
1 TTT
7270794 AAAATTATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
44 8 0.19
45 4 0.09
46 13 0.30
47 18 0.42
ACGTcount: A:0.37, C:0.01, G:0.05, T:0.56
Consensus pattern (45 bp):
TTTTAGAATATTTTAAAATATAAACTTTTGTAAATATTTTGAATT
Found at i:7270794 original size:34 final size:35
Alignment explanation
Indices: 7270730--7270797 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
7270720 TAAACTTTTT
* *
7270730 TATATATTTTTAGAATTTTTTAGAATTTTTAAAAA
1 TATAAATTTTTAGAATATTTTAGAATTTTTAAAAA
7270765 TATAAATTTTGTA-AATATTTT-GAATTTTTAAAA
1 TATAAATTTT-TAGAATATTTTAGAATTTTTAAAA
7270798 TTATTTTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
34 12 0.40
35 16 0.53
36 2 0.07
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.53
Consensus pattern (35 bp):
TATAAATTTTTAGAATATTTTAGAATTTTTAAAAA
Found at i:7270802 original size:19 final size:18
Alignment explanation
Indices: 7270735--7270812 Score: 72
Period size: 19 Copynumber: 4.3 Consensus size: 18
7270725 TTTTTTATAT
* *
7270735 ATTTTTAGAATTTTTTAGA
1 ATTTTTAAAATATTTT-GA
* *
7270754 ATTTTTAAAA-A-TATAA
1 ATTTTTAAAATATTTTGA
7270770 ATTTTGT-AAATATTTTGA
1 ATTTT-TAAAATATTTTGA
7270788 ATTTTTAAAATTATTTTGA
1 ATTTTTAAAA-TATTTTGA
7270807 ATTTTT
1 ATTTTT
7270813 TGTTGAGAGA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
16 9 0.19
17 5 0.10
18 11 0.23
19 23 0.48
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
ATTTTTAAAATATTTTGA
Found at i:7271268 original size:59 final size:59
Alignment explanation
Indices: 7271192--7271305 Score: 201
Period size: 59 Copynumber: 1.9 Consensus size: 59
7271182 AACTTCAAGC
*
7271192 AAGCTCTTGTAAACTAATTTAGGTTAACTATACAATAAAAATAGGATATTTTGAGGTTG
1 AAGCTCTTGTAAACTAATGTAGGTTAACTATACAATAAAAATAGGATATTTTGAGGTTG
* *
7271251 AAGCTCTTGTAACCTAATGTAGGTTAACTATACAATATAAATAGGATATTTTGAG
1 AAGCTCTTGTAAACTAATGTAGGTTAACTATACAATAAAAATAGGATATTTTGAG
7271306 AGAGACTGAG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.35
Consensus pattern (59 bp):
AAGCTCTTGTAAACTAATGTAGGTTAACTATACAATAAAAATAGGATATTTTGAGGTTG
Found at i:7274312 original size:21 final size:20
Alignment explanation
Indices: 7274283--7274349 Score: 63
Period size: 20 Copynumber: 3.5 Consensus size: 20
7274273 TCTTTTTGCA
7274283 TTCA-TGCATGTGCATTACAT
1 TTCATTGCAT-TGCATTACAT
*
7274303 TTCATTGCA-TGCA-T-CTT
1 TTCATTGCATTGCATTACAT
*
7274320 TTCATT-CATTAACATTACAT
1 TTCATTGCATT-GCATTACAT
7274340 TTCATTGCAT
1 TTCATTGCAT
7274350 ACAATAAATT
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
16 2 0.05
17 9 0.24
18 3 0.08
19 5 0.13
20 12 0.32
21 7 0.18
ACGTcount: A:0.25, C:0.21, G:0.09, T:0.45
Consensus pattern (20 bp):
TTCATTGCATTGCATTACAT
Found at i:7276172 original size:8 final size:7
Alignment explanation
Indices: 7276123--7276172 Score: 57
Period size: 7 Copynumber: 7.3 Consensus size: 7
7276113 AAAAAAATGG
7276123 AAAGAAA
1 AAAGAAA
7276130 AAAGAAA
1 AAAGAAA
*
7276137 AAACAAA
1 AAAGAAA
*
7276144 AGA-AAA
1 AAAGAAA
7276150 AAAGAAA
1 AAAGAAA
*
7276157 AAACAAA
1 AAAGAAA
*
7276164 ATAGAAA
1 AAAGAAA
7276171 AA
1 AA
7276173 GGAGAGGCCA
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
6 5 0.14
7 30 0.86
ACGTcount: A:0.84, C:0.04, G:0.10, T:0.02
Consensus pattern (7 bp):
AAAGAAA
Found at i:7276173 original size:20 final size:20
Alignment explanation
Indices: 7276123--7276164 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
7276113 AAAAAAATGG
7276123 AAAG-AAAAAAGAAAAAACA
1 AAAGAAAAAAAGAAAAAACA
7276142 AAAGAAAAAAAGAAAAAACA
1 AAAGAAAAAAAGAAAAAACA
7276162 AAA
1 AAA
7276165 TAGAAAAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.86, C:0.05, G:0.10, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAAAGAAAAAACA
Found at i:7276700 original size:108 final size:108
Alignment explanation
Indices: 7276511--7276706 Score: 295
Period size: 108 Copynumber: 1.8 Consensus size: 108
7276501 TTTGTATTCT
*
7276511 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAATTTCCATCTT
1 AGCAAAATTTGCTATCTTGATTAATTTATTCATTTAGAGCTTTGCTCTCAACAAATTTCCATCTT
7276576 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
* * * ** *
7276619 AGCAAATTTTGCTATCTTGGTTGATTTATTTGTTTAGAGCTTTGCTCTCGACAAAATTT-CATCT
1 AGCAAAATTTGCTATCTTGATTAATTTATTCATTTAGAGCTTTGCTCTCAAC-AAATTTCCATCT
* *
7276683 TGTCCATTTTGATAATCTTTTTCA
65 TATCCATTGTGATAATCTTTTTCA
7276707 AGCATTTTTC
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
108 72 0.92
109 6 0.08
ACGTcount: A:0.24, C:0.18, G:0.11, T:0.46
Consensus pattern (108 bp):
AGCAAAATTTGCTATCTTGATTAATTTATTCATTTAGAGCTTTGCTCTCAACAAATTTCCATCTT
ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
Found at i:7277381 original size:88 final size:88
Alignment explanation
Indices: 7277130--7277533 Score: 553
Period size: 88 Copynumber: 4.6 Consensus size: 88
7277120 CCCTAGAGAA
* * * ** * ** *
7277130 CAGATCGAAGACACAAGCCTTGCCTCCCTCGTTTACAGTGGAGCTGGTCAAAGATAGCAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
7277195 GCCTTCCTGCATTAACAGCGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * * * *
7277218 CAGATCGAAAACA-AAACCTTGCCTC-CATTGGTTGCAGTGGAGCTGGTTAAAGA-AACAGATCT
1 CAGATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCT
*
7277280 TGCCTTCCTGCATTAATAGCGAAG
65 TGCCTTCCTGCATTAACAGCGAAG
*
7277304 CAGATCGAATACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
7277369 GCCTTCCTGCATTAACAGCGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * * * *
7277392 CAAATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAACGGAGCTGGTTGAAGACAATAAATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
*
7277457 GCCTTCCTGCATTAACAGTGAAG
66 GCCTTCCTGCATTAACAGCGAAG
* * *
7277480 CAGATCGAAGACACAAACCTTACCTCTCTCAGTTGTAACGGAGCTGGTTGAAGA
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGA
7277534 CATCAAGTCT
Statistics
Matches: 288, Mismatches: 24, Indels: 8
0.90 0.08 0.03
Matches are distributed among these distances:
86 44 0.15
87 67 0.23
88 177 0.61
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (88 bp):
CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
GCCTTCCTGCATTAACAGCGAAG
Found at i:7277414 original size:44 final size:44
Alignment explanation
Indices: 7277130--7277500 Score: 163
Period size: 44 Copynumber: 8.5 Consensus size: 44
7277120 CCCTAGAGAA
* * * * * *
7277130 CAGATCGAAGACACAAGCCTTGCCTCCCT-CGTTTACAGTGGAG
1 CAGATCGAAGACACAAACCTTGCCTTCCTGCATTAACAGCGAAG
* * * * * *
7277173 CTGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAG
1 CAGATCGAAGACA-CAAACCTTGCCTTCCTGCATTAACAGCGAAG
* * * * *
7277218 CAGATCGAAAACA-AAACCTTGCC-TCCATTG-GTT-GCAGTGGAG
1 CAGATCGAAGACACAAACCTTGCCTTCC--TGCATTAACAGCGAAG
* * ** * * * *
7277260 CTGGTTAAAGAAACAGATCTTGCCTTCCTGCATTAATAGCGAAG
1 CAGATCGAAGACACAAACCTTGCCTTCCTGCATTAACAGCGAAG
* * ** *
7277304 CAGATCGAATACACAAACCTTGCC-TCTCT-CGGTT-GTAGCGGAG
1 CAGATCGAAGACACAAACCTTGCCTTC-CTGC-ATTAACAGCGAAG
* * * * * *
7277347 CTGGTTGAAGATAACAGATCTTGCCTTCCTGCATTAACAGCGAAG
1 CAGATCGAAGA-CACAAACCTTGCCTTCCTGCATTAACAGCGAAG
* **
7277392 CAAATCGAAGACACAAACCTTGCC-TCTCTCGGTTGTAAC-G-G-AG
1 CAGATCGAAGACACAAACCTTGCCTTC-CT-GCAT-TAACAGCGAAG
* * * * * *
7277435 CTGGTTGAAGACAATAAATCTTGCCTTCCTGCATTAACAGTGAAG
1 CAGATCGAAGAC-ACAAACCTTGCCTTCCTGCATTAACAGCGAAG
7277480 CAGATCGAAGACACAAACCTT
1 CAGATCGAAGACACAAACCTT
7277501 ACCTCTCTCA
Statistics
Matches: 226, Mismatches: 80, Indels: 43
0.65 0.23 0.12
Matches are distributed among these distances:
42 22 0.10
43 61 0.27
44 89 0.39
45 50 0.22
46 4 0.02
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.24
Consensus pattern (44 bp):
CAGATCGAAGACACAAACCTTGCCTTCCTGCATTAACAGCGAAG
Found at i:7277508 original size:176 final size:174
Alignment explanation
Indices: 7277130--7277533 Score: 558
Period size: 174 Copynumber: 2.3 Consensus size: 174
7277120 CCCTAGAGAA
* * * ** * ** *
7277130 CAGATCGAAGACACAAGCCTTGCCTCCCTCGTTTACAGTGGAGCTGGTCAAAGATAGCAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
* * **
7277195 GCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAACCTTGCCTCCATTGGTTGCAGTGGAG
66 GCCTTCCTGCATTAACAGCGAAGCAAATCGAAAACAAAACCTTGCCTCCATCGGTTGCAACGGAG
* *
7277260 CTGGTTAAAGAAACAGATCTTGCCTTCCTGCATTAATAGCGAAG
131 CTGGTTAAAGAAACAAATCTTGCCTTCCTGCATTAACAGCGAAG
*
7277304 CAGATCGAATACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
* *
7277369 GCCTTCCTGCATTAACAGCGAAGCAAATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAACGG
66 GCCTTCCTGCATTAACAGCGAAGCAAATCGAAAACA-AAACCTTGCCTC-CATCGGTTGCAACGG
* * *
7277433 AGCTGGTTGAAGACAATAAATCTTGCCTTCCTGCATTAACAGTGAAG
129 AGCTGGTTAAAGA-AACAAATCTTGCCTTCCTGCATTAACAGCGAAG
* * *
7277480 CAGATCGAAGACACAAACCTTACCTCTCTCAGTTGTAACGGAGCTGGTTGAAGA
1 CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGA
7277534 CATCAAGTCT
Statistics
Matches: 202, Mismatches: 25, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
174 89 0.44
175 33 0.16
176 80 0.40
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (174 bp):
CAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGATAACAGATCTT
GCCTTCCTGCATTAACAGCGAAGCAAATCGAAAACAAAACCTTGCCTCCATCGGTTGCAACGGAG
CTGGTTAAAGAAACAAATCTTGCCTTCCTGCATTAACAGCGAAG
Found at i:7277535 original size:43 final size:43
Alignment explanation
Indices: 7277314--7277535 Score: 136
Period size: 44 Copynumber: 5.1 Consensus size: 43
7277304 CAGATCGAAT
* *
7277314 ACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAG
1 ACACAAACCTTGCCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
* * * *** *
7277357 ATAACAGATCTTGCCT-TCCTGCA--T-TAACAGCGAAGCAAATCGAAG
1 A-CACAAACCTTGCCTCT-CT-CAGTTGTAAC-G-G-AGCTGGTTGAAG
*
7277402 ACACAAACCTTGCCTCTCTCGGTTGTAACGGAGCTGGTTGAAG
1 ACACAAACCTTGCCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
* * * * *
7277445 ACAATAAATCTTGCCT-TCCTGCA--T-TAACAGTGAAGCAGATCGAAG
1 AC-ACAAACCTTGCCTCT-CT-CAGTTGTAAC-G-G-AGCTGGTTGAAG
*
7277490 ACACAAACCTTACCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
1 ACACAAACCTTGCCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
7277533 ACA
1 ACA
7277536 TCAAGTCTTA
Statistics
Matches: 130, Mismatches: 29, Indels: 40
0.65 0.15 0.20
Matches are distributed among these distances:
42 7 0.05
43 32 0.25
44 55 0.42
45 28 0.22
46 8 0.06
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (43 bp):
ACACAAACCTTGCCTCTCTCAGTTGTAACGGAGCTGGTTGAAG
Found at i:7277591 original size:44 final size:44
Alignment explanation
Indices: 7277541--7277866 Score: 399
Period size: 44 Copynumber: 7.7 Consensus size: 44
7277531 AGACATCAAG
*
7277541 TCTTATCTCCCTAAGAAGTAGTGGAGCAGATGAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATGAAAGAAACCAGA
* * * *
7277585 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT--CA-CATCAAG-
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATGAAAGAAACCAGA
*
7277625 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATGAAAGAAACCAGA
* * * * *
7277669 TCTTATCTCCCTAAGCAGTAGTCGAGCAGAT--CA-CATCAAG-
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATGAAAGAAACCAGA
*
7277709 TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATGAAAGAAACCAGA
* * * *
7277753 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT--CA-CATCAAG-
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATGAAAGAAACCAGA
* *
7277793 TCTTATCTCCCT-AGAAGTAGTGGAGCAGACGAAAGAAACCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATGAAAGAAACCAGA
7277836 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
7277867 CACATCAAGT
Statistics
Matches: 234, Mismatches: 35, Indels: 26
0.79 0.12 0.09
Matches are distributed among these distances:
39 16 0.07
40 71 0.30
41 13 0.06
42 9 0.04
43 20 0.09
44 105 0.45
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.22
Consensus pattern (44 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATGAAAGAAACCAGA
Found at i:7277630 original size:84 final size:84
Alignment explanation
Indices: 7277533--7277888 Score: 669
Period size: 84 Copynumber: 4.2 Consensus size: 84
7277523 CTGGTTGAAG
*
7277533 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGATGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
7277598 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
*
7277617 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
*
7277682 AGCAGTAGTCGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
*
7277701 ACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
7277766 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
7277785 ACATCAAGTCTTATCTCCCT-AGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
7277849 AGCAGTAGTGGAGCAGATC
66 AGCAGTAGTGGAGCAGATC
7277868 ACATCAAGTCTTATCTCCCTA
1 ACATCAAGTCTTATCTCCCTA
7277889 TTATTCAAGT
Statistics
Matches: 266, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
83 82 0.31
84 184 0.69
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.22
Consensus pattern (84 bp):
ACATCAAGTCTTATCTCCCTAAGAAGTAGTGGAGCAGACGAAAGAAACCAGATCTTATCTCCCTA
AGCAGTAGTGGAGCAGATC
Found at i:7278276 original size:59 final size:59
Alignment explanation
Indices: 7278200--7278313 Score: 201
Period size: 59 Copynumber: 1.9 Consensus size: 59
7278190 AACTTCAAGC
*
7278200 AAGCTCTTGTAAACTAATTTAGGTTAACTATACAATAAAAATAGGATATTTTGAGGTTG
1 AAGCTCTTGTAAACTAATGTAGGTTAACTATACAATAAAAATAGGATATTTTGAGGTTG
* *
7278259 AAGCTCTTGTAACCTAATGTAGGTTAACTATACAATATAAATAGGATATTTTGAG
1 AAGCTCTTGTAAACTAATGTAGGTTAACTATACAATAAAAATAGGATATTTTGAG
7278314 AGAGACTGAG
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
59 52 1.00
ACGTcount: A:0.39, C:0.10, G:0.17, T:0.35
Consensus pattern (59 bp):
AAGCTCTTGTAAACTAATGTAGGTTAACTATACAATAAAAATAGGATATTTTGAGGTTG
Found at i:7283164 original size:7 final size:7
Alignment explanation
Indices: 7283154--7283203 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
7283144 AAAAAAAAAC
7283154 AAAATGA
1 AAAATGA
7283161 AAAATGAA
1 AAAATG-A
7283169 AAAAT-A
1 AAAATGA
7283175 AAAA--A
1 AAAATGA
7283180 ATAAATGA
1 A-AAATGA
7283188 AAAATGA
1 AAAATGA
7283195 AAAA-GA
1 AAAATGA
7283201 AAA
1 AAA
7283204 GAGAAAAAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
5 2 0.05
6 13 0.33
7 16 0.41
8 8 0.21
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (7 bp):
AAAATGA
Found at i:7283172 original size:20 final size:20
Alignment explanation
Indices: 7283147--7283191 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
7283137 TCACTTGAAA
*
7283147 AAAAAACAAAATGAA-AAATG
1 AAAAAACAAAA-AAATAAATG
*
7283167 AAAAAATAAAAAAATAAATG
1 AAAAAACAAAAAAATAAATG
7283187 AAAAA
1 AAAAA
7283192 TGAAAAAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 2 0.09
20 20 0.91
ACGTcount: A:0.80, C:0.02, G:0.07, T:0.11
Consensus pattern (20 bp):
AAAAAACAAAAAAATAAATG
Found at i:7283185 original size:27 final size:28
Alignment explanation
Indices: 7283146--7283198 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
7283136 TTCACTTGAA
7283146 AAAAAAACAAAATGAAAAATGAAAAAAT
1 AAAAAAACAAAATGAAAAATGAAAAAAT
*
7283174 AAAAAAA-TAAATGAAAAATGAAAAA
1 AAAAAAACAAAATGAAAAATGAAAAA
7283199 GAAAAGAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 17 0.71
28 7 0.29
ACGTcount: A:0.79, C:0.02, G:0.08, T:0.11
Consensus pattern (28 bp):
AAAAAAACAAAATGAAAAATGAAAAAAT
Found at i:7283739 original size:108 final size:108
Alignment explanation
Indices: 7283550--7283745 Score: 313
Period size: 108 Copynumber: 1.8 Consensus size: 108
7283540 TTTGTATTCT
7283550 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAATTTCCATTTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAATTTCCATTTT
7283615 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
66 ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
* * **
7283658 AGCAAAATTTGCTGTCTTGATTAATTTTTTTGTTTAGAGCTTTGCTCTCAACAAAATTT-CATTT
1 AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAAC-AAATTTCCATTT
* * *
7283722 TGTCTATTTTGATAATCTTTTTCA
65 TATCCATTGTGATAATCTTTTTCA
7283746 AGCATTTTTC
Statistics
Matches: 80, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
108 74 0.93
109 6 0.08
ACGTcount: A:0.26, C:0.17, G:0.10, T:0.47
Consensus pattern (108 bp):
AGCAAAATTTGCTATCTTGATTAATTTGTTCATTTAGAGCTTTGCTCTCAACAAATTTCCATTTT
ATCCATTGTGATAATCTTTTTCATCTTATACATCTCGTATCTC
Found at i:7284329 original size:87 final size:88
Alignment explanation
Indices: 7284202--7284964 Score: 944
Period size: 87 Copynumber: 8.7 Consensus size: 88
7284192 ACCTCCATCA
* * ** *
7284202 GTTGCAGTAGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
1 GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
*
7284267 AAACA-AAACCTTGCCTCCCTCG
66 AAACACAAACCTTGCCTCTCTCG
* * *
7284289 TTTGTAGTGGAGCCGATTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
1 GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
*
7284354 AAACA-AAACCTTGCCTCCCTCG
66 AAACACAAACCTTGCCTCTCTCG
* * * *
7284376 TTTGTAGTGGAACCGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAACGAAGCAGATCGA
1 GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
*
7284441 AAACACAAACCTTGCCTCTCTTG
66 AAACACAAACCTTGCCTCTCTCG
* ** * * *
7284464 GGTGTAGCAGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTACATTAACAGTGAAACAGATCGA
1 GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
* *
7284529 AAACA-AAACCTTGTCTTTCTCG
66 AAACACAAACCTTGCCTCTCTCG
* ** * *
7284551 GGTGTAGCAGAGCTGGTTGAAGACAGCAGATCTTGTCTTCCTGCATTAACAGTGAAGCAGATCGA
1 GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
*
7284616 AGACACAAACCTTGCCTCTCTCG
66 AAACACAAACCTTGCCTCTCTCG
* ** * *
7284639 GGTGTAGCAGAGCTGG-TGAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATTGA
1 GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
* * *
7284703 AGACACAAACCTTGTCTCTCTCA
66 AAACACAAACCTTGCCTCTCTCG
* * * * *
7284726 GTTGTGGTGGAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGA
1 GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
*
7284791 AGACACAAACCTTGCCTCTCTCG
66 AAACACAAACCTTGCCTCTCTCG
* * * *
7284814 GTTGTAGTGGAGCTGGTTGAAGATAACAGATCTTGCCTTCTTGTATTAACAGCGAAGCAGATCGA
1 GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
* *
7284879 AAACA-AAACATTGCCTC-CATCA
66 AAACACAAACCTTGCCTCTC-TCG
* * * * * * * * * *
7284901 GTTGCAGTGGAGCTGGTTAAAAATAGCAGATTTTGCATTCTTGCGTTAACAGTGAAGTAGATCG
1 GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCG
7284965 CAGTGGAGCT
Statistics
Matches: 602, Mismatches: 70, Indels: 8
0.89 0.10 0.01
Matches are distributed among these distances:
86 1 0.00
87 370 0.61
88 231 0.38
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (88 bp):
GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGA
AAACACAAACCTTGCCTCTCTCG
Found at i:7284455 original size:44 final size:44
Alignment explanation
Indices: 7284233--7284632 Score: 167
Period size: 44 Copynumber: 9.2 Consensus size: 44
7284223 GATAGCAGAT
7284233 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACA-AAAC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACACAAAC
* * *** * * * * * * *
7284276 CTTGCCTCCCT-CGTTTGTAGTGGAGCCGATTGAAGACAGCAGAT
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACA-CAAAC
7284320 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACA-AAAC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACACAAAC
* * *** * * * * * * *
7284363 CTTGCCTCCCT-CGTTTGTAGTGGAA-CCGGTTGAAGACAGCAGAT
1 CTTGCCTTCCTGCATTAACAG-CGAAGCAGATCGAAAACA-CAAAC
*
7284407 CTTGCCTTCCTGCATTAACAACGAAGCAGATCGAAAACACAAAC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACACAAAC
* ** * * * * * * *
7284451 CTTGCCTCTCTTGGGTGTAGCA--G-AGCTGGTTGAAGACAGCAGAT
1 CTTGCCT-TCCTGCAT-TAACAGCGAAGCAGATCGAAAACA-CAAAC
* * *
7284495 CTTGCCTTCCTACATTAACAGTGAAACAGATCGAAAACA-AAAC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACACAAAC
* * ** * * * * * * *
7284538 CTTGTCTTTCTCGGGTGTAGCA--G-AGCTGGTTGAAGACAGCAGAT
1 CTTGCCTTCCT-GCAT-TAACAGCGAAGCAGATCGAAAACA-CAAAC
* * *
7284582 CTTGTCTTCCTGCATTAACAGTGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACACAAAC
7284626 CTTGCCT
1 CTTGCCT
7284633 CTCTCGGGTG
Statistics
Matches: 242, Mismatches: 94, Indels: 41
0.64 0.25 0.11
Matches are distributed among these distances:
42 50 0.21
43 54 0.22
44 72 0.30
45 62 0.26
46 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.24
Consensus pattern (44 bp):
CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACACAAAC
Found at i:7284527 original size:175 final size:174
Alignment explanation
Indices: 7284188--7284964 Score: 946
Period size: 175 Copynumber: 4.4 Consensus size: 174
7284178 AGAAACAGAT
* * * * ** *
7284188 CCTTACCTCCATCAGTTGCAGTAGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTAACA
1 CCTTGCCTCCCTC-GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
* ** ** * *
7284253 GCGAAGCAGATCGAAAACA-AAACCTTGCCTCCCTCGTTTGTAGTGGAGCCGATTGAAGACAGCA
65 GCGAAGCAGATCGAAAACACAAACCTTGCCTCTCTCGGGTGTAGCAGAGCTGGTTGAAGACAGCA
7284317 GATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAA
130 GATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAA
* *
7284362 CCTTGCCTCCCTCGTTTGTAGTGGAACCGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
1 CCTTGCCTCCCTCG-TTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
* *
7284427 ACGAAGCAGATCGAAAACACAAACCTTGCCTCTCTTGGGTGTAGCAGAGCTGGTTGAAGACAGCA
65 GCGAAGCAGATCGAAAACACAAACCTTGCCTCTCTCGGGTGTAGCAGAGCTGGTTGAAGACAGCA
* * *
7284492 GATCTTGCCTTCCTACATTAACAGTGAAACAGATCGAAAACAAAA
130 GATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAA
* ** * ** *
7284537 CCTTGTCTTTCTCGGGTGTAGCAGAGCTGGTTGAAGACAGCAGATCTTGTCTTCCTGCATTAACA
1 CCTTGCCTCCCTC-GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
* * *
7284602 GTGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGGTGTAGCAGAGCTGG-TGAAGATAGCA
65 GCGAAGCAGATCGAAAACACAAACCTTGCCTCTCTCGGGTGTAGCAGAGCTGGTTGAAGACAGCA
* *
7284666 GATCTTGCCTTCCTGCATTAACAGCGAAGCAGATTGAAGACACAAA
130 GATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACA-AAA
* * * * * *
7284712 CCTTGTCTCTCTCAGTTGTGGTGGAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGCATTGACA
1 CCTTGCCTCCCTC-GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
* * * ** * *
7284777 GCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGATAACA
65 GCGAAGCAGATCGAAAACACAAACCTTGCCTCTCTCGGGTGTAGCAGAGCTGGTTGAAGACAGCA
* *
7284842 GATCTTGCCTTCTTGTATTAACAGCGAAGCAGATCGAAAACAAAA
130 GATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAA
* * * * * * * * * *
7284887 CATTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAAATAGCAGATTTTGCATTCTTGCGTTAACA
1 CCTTGCCTCCCTC-GTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
* *
7284952 GTGAAGTAGATCG
65 GCGAAGCAGATCG
7284965 CAGTGGAGCT
Statistics
Matches: 521, Mismatches: 77, Indels: 9
0.86 0.13 0.01
Matches are distributed among these distances:
173 1 0.00
174 119 0.23
175 352 0.68
176 49 0.09
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (174 bp):
CCTTGCCTCCCTCGTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACAG
CGAAGCAGATCGAAAACACAAACCTTGCCTCTCTCGGGTGTAGCAGAGCTGGTTGAAGACAGCAG
ATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAA
Found at i:7284849 original size:44 final size:43
Alignment explanation
Indices: 7284699--7284851 Score: 103
Period size: 44 Copynumber: 3.5 Consensus size: 43
7284689 GCGAAGCAGA
* * * * * *
7284699 TTGAAGACACAAACCTTGTCTCTCTCAGTTGTGGTGGAGCTGG
1 TTGAAGAAACAGATCTTGCCTCTCTCGGTTGTAGTGGAGCTGG
* * * * * *
7284742 TTAAAGACAACAGATCTTGCCT-TC-CTGCATTGACAGCGAAGCAGG
1 TTGAAGA-AACAGATCTTGCCTCTCTC-G-GTTG-TAGTGGAGCTGG
* * * *
7284787 TCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGTGGAGCTGG
1 TTGAAGAAACAGATCTTGCCTCTCTCGGTTGTAGTGGAGCTGG
7284830 TTGAAGATAACAGATCTTGCCT
1 TTGAAGA-AACAGATCTTGCCT
7284852 TCTTGTATTA
Statistics
Matches: 77, Mismatches: 26, Indels: 13
0.66 0.22 0.11
Matches are distributed among these distances:
42 1 0.01
43 22 0.29
44 38 0.49
45 15 0.19
46 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (43 bp):
TTGAAGAAACAGATCTTGCCTCTCTCGGTTGTAGTGGAGCTGG
Found at i:7284916 original size:262 final size:260
Alignment explanation
Indices: 7284210--7284964 Score: 963
Period size: 262 Copynumber: 2.9 Consensus size: 260
7284200 CAGTTGCAGT
* *
7284210 AGAGCTGGTCAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAA
1 AGAGCTGGTTAAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAA
* * * *
7284275 CCTTGCCTCCCTCGTTTGTAGTGGAGCCGATTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
66 CCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
* * *
7284340 GCGAAGCAGATCGAAAACAAAACCTTGCCTCCCTCGTTTGTAGTGGAACCGGTTGAAGACAGCAG
131 GCGAAGCAGATCGAAAACAAAACCTTGCCT-CCTCG-TTGTAGTGGAGCTGGTTGAAGATAGCAG
* **
7284405 ATCTTGCCTTCCTGCATTAACAACGAAGCAGATCGAAAACACAAACCTTGCCTCTCTTGGGTGTA
194 ATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACACAAACCTTGCCTCTCTCAGGTGTA
7284470 GC
259 GC
* * * *
7284472 AGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTACATTAACAGTGAAACAGATCGAAAACAAAA
1 AGAGCTGGTTAAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAA
* * * ** *
7284537 CCTTGTCTTTCTCGGGTGTAGCAGAGCTGGTTGAAGACAGCAGATCTTGTCTTCCTGCATTAACA
66 CCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
* * * **
7284602 GTGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGGTGTAGCAGAGCTGG-TGAAGATAGCA
131 GCGAAGCAGATCGAAAACA-AAACCTTGCCTC-CTC-GTTGTAGTGGAGCTGGTTGAAGATAGCA
* * * *
7284666 GATCTTGCCTTCCTGCATTAACAGCGAAGCAGATTGAAGACACAAACCTTGTCTCTCTCAGTTGT
193 GATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACACAAACCTTGCCTCTCTCAGGTGT
* *
7284731 GGT
258 AGC
* * * * *
7284734 GGAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAA
1 AGAGCTGGTTAAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACA-AA
* * * *
7284799 ACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGATAACAGATCTTGCCTTCTTGTATTAAC
65 ACCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAAC
* * * *
7284864 AGCGAAGCAGATCGAAAACAAAACATTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAAATAGCA
130 AGCGAAGCAGATCGAAAACAAAACCTTGCCTCC-TC-GTTGTAGTGGAGCTGGTTGAAGATAGCA
* * * * * *
7284929 GATTTTGCATTCTTGCGTTAACAGTGAAGTAGATCG
193 GATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCG
7284965 CAGTGGAGCT
Statistics
Matches: 418, Mismatches: 69, Indels: 11
0.84 0.14 0.02
Matches are distributed among these distances:
261 1 0.00
262 279 0.67
263 137 0.33
264 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (260 bp):
AGAGCTGGTTAAAGACAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAA
CCTTGCCTCTCTCGGTTGTAGTGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTAACA
GCGAAGCAGATCGAAAACAAAACCTTGCCTCCTCGTTGTAGTGGAGCTGGTTGAAGATAGCAGAT
CTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACACAAACCTTGCCTCTCTCAGGTGTAGC
Found at i:7285251 original size:84 final size:84
Alignment explanation
Indices: 7285155--7285487 Score: 403
Period size: 84 Copynumber: 3.9 Consensus size: 84
7285145 AGTAGAGTAC
* * *
7285155 AAAGAAATCAGATCTTATCTCTCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTA
1 AAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTA
7285220 AGCAGTAGTGGAGCAGACG
66 AGCAGTAGTGGAGCAGACG
7285239 AAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTA
1 AAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTA
7285304 AGCAGTAGTGGAGCAGACG
66 AGCAGTAGTGGAGCAGACG
* *
7285323 AAAGAAACCAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAAGTCTTATCT
1 AAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-----ACATCAAGTCTTATCT
*
7285386 CTCTAAGCAGTAGTGGAGCAGATC-
61 CCCTAAGCAGTAGTGGAGCAGA-CG
* * * * * *
7285410 --A-CATCAAG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCT
1 AAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCT
7285470 CCCTAAGCAGTAGTGGAG
61 CCCTAAGCAGTAGTGGAG
7285488 TGGATTGCAT
Statistics
Matches: 227, Mismatches: 14, Indels: 16
0.88 0.05 0.06
Matches are distributed among these distances:
82 3 0.01
83 35 0.15
84 152 0.67
85 1 0.00
87 35 0.15
88 1 0.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.22
Consensus pattern (84 bp):
AAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTA
AGCAGTAGTGGAGCAGACG
Found at i:7285359 original size:127 final size:127
Alignment explanation
Indices: 7285205--7285531 Score: 538
Period size: 127 Copynumber: 2.6 Consensus size: 127
7285195 GATCACATCA
7285205 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC-AGATCTTATCTCCCTAAGCAG
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAAG-TCTTATCTCCCTAAGCAG
7285269 TAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC
65 TAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC
*
7285332 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAAGTCTTATCTCTCTAAGCAGT
1 AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAAGTCTTATCTCCCTAAGCAGT
7285397 AGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC
66 AGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC
* ** * * *
7285459 AGATCTTATCTCCCTAAGCAGTAGTGGAG-TG--GATTG-CATCAAGTCTTATCTCTCTAAGCAG
1 AG-TCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAAGTCTTATCTCCCTAAGCAG
7285520 TAGTGGAGCAGA
65 TAGTGGAGCAGA
7285532 CGAAAGAAAC
Statistics
Matches: 192, Mismatches: 6, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
124 35 0.18
125 3 0.02
127 126 0.66
128 28 0.15
ACGTcount: A:0.32, C:0.22, G:0.23, T:0.23
Consensus pattern (127 bp):
AGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAAGTCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACC
Found at i:7285519 original size:211 final size:211
Alignment explanation
Indices: 7285167--7285558 Score: 712
Period size: 211 Copynumber: 1.9 Consensus size: 211
7285157 AGAAATCAGA
7285167 TCTTATCTCTCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
1 TCTTATCTCTCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
7285232 GCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTAT
66 GCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTAT
* *
7285297 CTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAGTCTTATCTCCCTAAGCAGTAGTGGAGCA
131 CTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAATCCTATCTCCCTAAGCAGTAGTGGAGCA
7285362 GACGAAAGAAACCAAG
196 GACGAAAGAAACCAAG
*
7285378 TCTTATCTCTCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
1 TCTTATCTCTCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
** **
7285443 GCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGTGGATTGCATCAAGTCTTAT
66 GCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTAT
*
7285508 CTCTCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAATCCTATCTCCCTAA
131 CTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAATCCTATCTCCCTAA
7285559 AGTTGCAGTG
Statistics
Matches: 173, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
211 173 1.00
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (211 bp):
TCTTATCTCTCTAAGCAGTAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
GCAGACGAAAGAAACCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTAT
CTCCCTAAGCAGTAGTGGAGCAGACGAAAGAAACCAATCCTATCTCCCTAAGCAGTAGTGGAGCA
GACGAAAGAAACCAAG
Found at i:7285569 original size:84 final size:83
Alignment explanation
Indices: 7285207--7285576 Score: 403
Period size: 84 Copynumber: 4.4 Consensus size: 83
7285197 TCACATCAAG
* * *
7285207 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGATCTTATCTCCCTAAGCAGTA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAG-TCTTATCTCCCTAAGCAGTA
* *
7285271 GTGGAGCAGATC-----ACATCAA
61 GTGGAGCAGA-CGAAAGAAACCAA
* * *
7285290 GTCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CGAAAGAAACCAGTCTTATCTCCCTAAGCAGTA
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC---A-CATCAAGTCTTATCTCCCTAAGCAGTA
7285354 GTGGAGCAGACGAAAGAAACCAA
61 GTGGAGCAGACGAAAGAAACCAA
*
7285377 GTCTTATCTCTCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGG
7285442 AGCAGACGAAAGAAACCAGA
65 AGCAGACGAAAGAAACCA-A
** ** *
7285462 TCTTATCTCCCTAAGCAGTAGTGGAGTGGATTGCATCAAGTCTTATCTCTCTAAGCAGTAGTGGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
7285527 GCAGACGAAAGAAACCAA
66 GCAGACGAAAGAAACCAA
* ** *
7285545 TCCTATCTCCCTAAAGTTGCAGTGGAGCAGAT
1 TCTTATCTCCCT-AAGCAGTAGTGGAGCAGAT
7285577 TAAAACCATA
Statistics
Matches: 260, Mismatches: 18, Indels: 16
0.88 0.06 0.05
Matches are distributed among these distances:
82 1 0.00
83 42 0.16
84 179 0.69
85 2 0.01
87 35 0.13
88 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.22, T:0.22
Consensus pattern (83 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGTAGTGGA
GCAGACGAAAGAAACCAA
Found at i:7285847 original size:10 final size:11
Alignment explanation
Indices: 7285828--7285864 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
7285818 AACAAAACAA
7285828 AAAATAAA-CC
1 AAAATAAACCC
*
7285838 AAAATTAACCC
1 AAAATAAACCC
7285849 AAAATAAACCC
1 AAAATAAACCC
7285860 AAAAT
1 AAAAT
7285865 GCCAGCCCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 7 0.29
11 17 0.71
ACGTcount: A:0.65, C:0.22, G:0.00, T:0.14
Consensus pattern (11 bp):
AAAATAAACCC
Found at i:7291563 original size:41 final size:42
Alignment explanation
Indices: 7291541--7291620 Score: 137
Period size: 41 Copynumber: 1.9 Consensus size: 42
7291531 AAAGTCTAAA
7291541 TGTTTAAAAATATATATATGAAA-TTTAAAAAAATCCTAATAG
1 TGTTTAAAAA-ATATATATGAAATTTTAAAAAAATCCTAATAG
7291583 TGTTTAAAAAATATATATGAAA-TTTAAAAAAATCCTAA
1 TGTTTAAAAAATATATATGAAATTTTAAAAAAATCCTAA
7291621 CATTATTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
41 28 0.74
42 10 0.26
ACGTcount: A:0.54, C:0.05, G:0.06, T:0.35
Consensus pattern (42 bp):
TGTTTAAAAAATATATATGAAATTTTAAAAAAATCCTAATAG
Found at i:7292676 original size:17 final size:16
Alignment explanation
Indices: 7292637--7292681 Score: 54
Period size: 17 Copynumber: 2.7 Consensus size: 16
7292627 ACTTTTTAAA
*
7292637 AAATTTTATAATAATT
1 AAATTTTATAAAAATT
*
7292653 AATATTTTTTAAAAATAT
1 AA-ATTTTATAAAAAT-T
7292671 AAATTTTATAA
1 AAATTTTATAA
7292682 GGTTGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 2 0.08
17 19 0.79
18 3 0.12
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (16 bp):
AAATTTTATAAAAATT
Found at i:7294861 original size:3 final size:3
Alignment explanation
Indices: 7294849--7294893 Score: 83
Period size: 3 Copynumber: 15.3 Consensus size: 3
7294839 CATGAATGTT
7294849 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7294894 ACAGTTAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 39 0.95
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:7296712 original size:12 final size:14
Alignment explanation
Indices: 7296682--7296714 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
7296672 CATGAATACA
7296682 CAATTCATATGTCT
1 CAATTCATATGTCT
7296696 CAATTCATAT-T-T
1 CAATTCATATGTCT
7296708 CAATTCA
1 CAATTCA
7296715 CTGCCCCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 8 0.42
13 1 0.05
14 10 0.53
ACGTcount: A:0.33, C:0.21, G:0.03, T:0.42
Consensus pattern (14 bp):
CAATTCATATGTCT
Found at i:7297179 original size:24 final size:24
Alignment explanation
Indices: 7297134--7297180 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
7297124 TATATACACC
7297134 AATTCAATCAATATAAATTCAATA
1 AATTCAATCAATATAAATTCAATA
7297158 AATTC-ATCACATAGTAAA-TCAAT
1 AATTCAATCA-ATA-TAAATTCAAT
7297181 CCATTTCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 4 0.19
24 13 0.62
25 4 0.19
ACGTcount: A:0.51, C:0.15, G:0.02, T:0.32
Consensus pattern (24 bp):
AATTCAATCAATATAAATTCAATA
Found at i:7297931 original size:13 final size:13
Alignment explanation
Indices: 7297894--7297932 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
7297884 GACTACTGTT
*
7297894 TTTTAATTTTAATA
1 TTTT-ATTTTATTA
*
7297908 TGTTATTTTATTA
1 TTTTATTTTATTA
7297921 TTTTATTTTATT
1 TTTTATTTTATT
7297933 TTATTTCTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 19 0.86
14 3 0.14
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.72
Consensus pattern (13 bp):
TTTTATTTTATTA
Found at i:7298760 original size:13 final size:13
Alignment explanation
Indices: 7298712--7298763 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 13
7298702 TTATTATTAT
7298712 TATTATTATTCTTTG
1 TATTA-TATT-TTTG
7298727 TATATATATTTTTG
1 TAT-TATATTTTTG
*
7298741 T-TT-TATTTTTT
1 TATTATATTTTTG
7298752 TATTATATTTTT
1 TATTATATTTTT
7298764 ACTCTTCTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
11 8 0.24
12 3 0.09
13 8 0.24
14 5 0.15
15 7 0.21
16 2 0.06
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (13 bp):
TATTATATTTTTG
Found at i:7298850 original size:16 final size:16
Alignment explanation
Indices: 7298831--7298879 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
7298821 TTTTATCGTA
7298831 TTTCTTATTTATTTAT
1 TTTCTTATTTATTTAT
7298847 TTTCTT-TATTA-TTAT
1 TTTCTTAT-TTATTTAT
*
7298862 TTTACTTA-ATATTTAT
1 TTT-CTTATTTATTTAT
7298878 TT
1 TT
7298880 ATTTATGTGT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
15 10 0.36
16 18 0.64
ACGTcount: A:0.22, C:0.06, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTCTTATTTATTTAT
Found at i:7299323 original size:72 final size:72
Alignment explanation
Indices: 7299206--7299349 Score: 218
Period size: 72 Copynumber: 2.0 Consensus size: 72
7299196 TCTTTTCAAA
* * *
7299206 CTCAAGTTTTAAACAATCTCGGGAATTAAAAAGAGATCGTGTCCTAACTTACTGGGCGTGATCCC
1 CTCAAGTTTTAAACAATCTCGGAAATTAAAAAGAGATCGAGTCCTAACTTACTGGGCATGATCCC
7299271 TTTTTTT
66 TTTTTTT
**
7299278 CTCAAGTTTTAAATGATCTCGGAAATTAAGAAA-AGATCGAGTCCTAACTTACTGGGCATGATCC
1 CTCAAGTTTTAAACAATCTCGGAAATTAA-AAAGAGATCGAGTCCTAACTTACTGGGCATGATCC
*
7299342 TTTTTTTT
65 CTTTTTTT
7299350 TAATCCGAGA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
72 62 0.95
73 3 0.05
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.35
Consensus pattern (72 bp):
CTCAAGTTTTAAACAATCTCGGAAATTAAAAAGAGATCGAGTCCTAACTTACTGGGCATGATCCC
TTTTTTT
Found at i:7300380 original size:5 final size:5
Alignment explanation
Indices: 7300370--7300418 Score: 98
Period size: 5 Copynumber: 9.8 Consensus size: 5
7300360 ATTTTTTTAT
7300370 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
1 TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATAA TATA
7300419 CTTAATTCTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 44 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
TATAA
Found at i:7309673 original size:13 final size:13
Alignment explanation
Indices: 7309655--7309679 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7309645 AATAAACTTC
7309655 TGAAAAATACAAT
1 TGAAAAATACAAT
7309668 TGAAAAATACAA
1 TGAAAAATACAA
7309680 ACCTTCTCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.20
Consensus pattern (13 bp):
TGAAAAATACAAT
Found at i:7317321 original size:10 final size:9
Alignment explanation
Indices: 7317308--7317474 Score: 54
Period size: 9 Copynumber: 17.6 Consensus size: 9
7317298 AATTATAAAA
7317308 AAAAACTTAT
1 AAAAA-TTAT
7317318 AAAAATTTAT
1 AAAAA-TTAT
7317328 AATAAA-TAT
1 AA-AAATTAT
7317337 AATAAATTAT
1 AA-AAATTAT
**
7317347 AAAAATCCT
1 AAAAATTAT
7317356 -AAAATTAAT
1 AAAAATT-AT
*
7317365 AAAATTTATT
1 AAAAATTA-T
* *
7317375 TAAAATGTTT
1 AAAAAT-TAT
*
7317385 AAAATTATTAA
1 AAAA--ATTAT
*
7317396 AAAAAGTAT
1 AAAAATTAT
* * *
7317405 CAGAATTCT
1 AAAAATTAT
*
7317414 TAAAA--AT
1 AAAAATTAT
*
7317421 AAAAATTGT
1 AAAAATTAT
7317430 CAATAAATTAT
1 -AA-AAATTAT
*
7317441 AAAAAATAT
1 AAAAATTAT
*
7317450 TAAAATTGAT
1 AAAAATT-AT
*
7317460 ATAAACTTAT
1 A-AAAATTAT
7317470 AAAAA
1 AAAAA
7317475 AATCATAAAA
Statistics
Matches: 113, Mismatches: 30, Indels: 29
0.66 0.17 0.17
Matches are distributed among these distances:
7 5 0.04
8 5 0.04
9 42 0.37
10 39 0.35
11 20 0.18
12 2 0.02
ACGTcount: A:0.59, C:0.04, G:0.03, T:0.34
Consensus pattern (9 bp):
AAAAATTAT
Found at i:7317346 original size:19 final size:18
Alignment explanation
Indices: 7317315--7317352 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
7317305 AAAAAAAACT
7317315 TATAAAAATTTATAATAAA
1 TATAAAAATTTATAA-AAA
7317334 TATAATAAA-TTATAAAAA
1 TATAA-AAATTTATAAAAA
7317352 T
1 T
7317353 CCTAAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 4 0.22
19 11 0.61
20 3 0.17
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
TATAAAAATTTATAAAAA
Found at i:7317967 original size:9 final size:9
Alignment explanation
Indices: 7317955--7318176 Score: 89
Period size: 10 Copynumber: 23.8 Consensus size: 9
7317945 CTTTTAACAT
7317955 TTTTTATAA
1 TTTTTATAA
7317964 TTTTTATTAA
1 TTTTTA-TAA
*
7317974 TTTTATAGAA
1 TTTT-TATAA
* *
7317984 TTTTAATACG
1 TTTTTATA-A
**
7317994 TACTTATAAA
1 TTTTTAT-AA
*
7318004 ATTTTA-AA
1 TTTTTATAA
*
7318012 TATTTTAAATA
1 T-TTTTATA-A
*
7318023 TGTTTTTTTAA
1 T-T-TTTATAA
*
7318034 T-TTTATAT
1 TTTTTATAA
7318042 TTTTTTATAA
1 T-TTTTATAA
*
7318052 TTTATTAGAA
1 TTT-TTATAA
7318062 TTTTTAT-A
1 TTTTTATAA
7318070 TTTTTATAA
1 TTTTTATAA
* *
7318079 TATTTATAG
1 TTTTTATAA
*
7318088 TAGTTTATAA
1 T-TTTTATAA
*
7318098 TATTTATAA
1 TTTTTATAA
*
7318107 GTTTATATCAA
1 -TTTTTAT-AA
*
7318118 TTTTCAT-A
1 TTTTTATAA
7318126 -TTTT-TAA
1 TTTTTATAA
* *
7318133 TATATAATAA
1 T-TTTTATAA
7318143 TTTTTATAA
1 TTTTTATAA
7318152 -TTTTATAA
1 TTTTTATAA
*
7318160 TTTTTAATCA
1 TTTTT-ATAA
7318170 TTTTTAT
1 TTTTTAT
7318177 GGGAAAAATA
Statistics
Matches: 157, Mismatches: 35, Indels: 42
0.67 0.15 0.18
Matches are distributed among these distances:
6 1 0.01
7 4 0.03
8 25 0.16
9 48 0.31
10 65 0.41
11 10 0.06
12 4 0.03
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.59
Consensus pattern (9 bp):
TTTTTATAA
Found at i:7317977 original size:19 final size:18
Alignment explanation
Indices: 7317955--7318176 Score: 89
Period size: 19 Copynumber: 11.9 Consensus size: 18
7317945 CTTTTAACAT
7317955 TTTTTATAATTTTTATTAA
1 TTTTTATAATTTTTA-TAA
* * *
7317974 TTTTATAGAATTTTAATACG
1 TTTT-TATAATTTTTATA-A
** *
7317994 TACTTATAAAATTTTA-AA
1 TTTTTAT-AATTTTTATAA
* *
7318012 TATTTTAAATATGTTTTTTTAA
1 T-TTTTATA-AT-T-TTTATAA
*
7318034 T-TTTATATTTTTTTATAA
1 TTTTTATAAT-TTTTATAA
*
7318052 TTTATTAGAATTTTTAT-A
1 TTT-TTATAATTTTTATAA
* *
7318070 TTTTTATAATATTTATAG
1 TTTTTATAATTTTTATAA
* *
7318088 TAGTTTATAATATTTATAA
1 T-TTTTATAATTTTTATAA
* *
7318107 GTTTATATCAATTTTCAT-A
1 -TTTTTAT-AATTTTTATAA
* *
7318126 -TTTT-TAATATATAATAA
1 TTTTTATAAT-TTTTATAA
7318143 TTTTTATAA-TTTTATAA
1 TTTTTATAATTTTTATAA
*
7318160 TTTTTAATCATTTTTAT
1 TTTTT-ATAATTTTTAT
7318177 GGGAAAAATA
Statistics
Matches: 148, Mismatches: 35, Indels: 40
0.66 0.16 0.18
Matches are distributed among these distances:
15 3 0.02
16 5 0.03
17 26 0.18
18 21 0.14
19 51 0.34
20 36 0.24
21 3 0.02
22 3 0.02
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTTTATAATTTTTATAA
Found at i:7318056 original size:17 final size:18
Alignment explanation
Indices: 7318020--7318054 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
7318010 AATATTTTAA
7318020 ATATGTTTTTTTAATTTT
1 ATATGTTTTTTTAATTTT
7318038 ATAT-TTTTTTATAATTT
1 ATATGTTTTTT-TAATTT
7318055 ATTAGAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (18 bp):
ATATGTTTTTTTAATTTT
Found at i:7318086 original size:17 final size:18
Alignment explanation
Indices: 7318045--7318165 Score: 92
Period size: 19 Copynumber: 6.7 Consensus size: 18
7318035 TTTATATTTT
* *
7318045 TTTATAATTTATTAGAATT
1 TTTATAATTT-TTATAATA
7318064 TTTAT-ATTTTTATAATA
1 TTTATAATTTTTATAATA
* *
7318081 TTTATAGTAGTTTATAATA
1 TTTATAAT-TTTTATAATA
*
7318100 TTTATAAGTTTATATCAAT-
1 TTTATAA-TTTTTAT-AATA
7318119 TTTCAT-A-TTTT-TAATA
1 TTT-ATAATTTTTATAATA
*
7318135 TATAATAATTTTTATAAT-
1 T-TTATAATTTTTATAATA
7318153 TTTATAATTTTTA
1 TTTATAATTTTTA
7318166 ATCATTTTTA
Statistics
Matches: 82, Mismatches: 10, Indels: 22
0.72 0.09 0.19
Matches are distributed among these distances:
15 3 0.04
16 4 0.05
17 27 0.33
18 10 0.12
19 32 0.39
20 6 0.07
ACGTcount: A:0.36, C:0.02, G:0.03, T:0.59
Consensus pattern (18 bp):
TTTATAATTTTTATAATA
Found at i:7328088 original size:27 final size:27
Alignment explanation
Indices: 7328058--7328124 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
7328048 CCTATCAGGT
7328058 AGGCGCCAATGAAGGTGCCTCACAGAG
1 AGGCGCCAATGAAGGTGCCTCACAGAG
*
7328085 AGGCGCCAATGAAGGTGCCTCATAGAG
1 AGGCGCCAATGAAGGTGCCTCACAGAG
7328112 AGGCGCCAATGAA
1 AGGCGCCAATGAA
7328125 TATTGTAATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.31, C:0.24, G:0.33, T:0.12
Consensus pattern (27 bp):
AGGCGCCAATGAAGGTGCCTCACAGAG
Found at i:7328147 original size:19 final size:19
Alignment explanation
Indices: 7328123--7328253 Score: 72
Period size: 19 Copynumber: 6.6 Consensus size: 19
7328113 GGCGCCAATG
7328123 AATATTGTAATTTTGTATT
1 AATATTGTAATTTTGTATT
*
7328142 AATATTGTAATTAT-T-TT
1 AATATTGTAATTTTGTATT
* *
7328159 -ATAAT-TAAATTTGTATTT
1 AATATTGTAATTTTGTA-TT
* *
7328177 ATAGTTTTGGATTAGTATTTTGTATG
1 A-A-TATT-G--TA--ATTTTGTATT
*
7328203 AATATTGTAATTTTTTATAT
1 AATATTGTAATTTTGTAT-T
* *
7328223 GAATATTATAATTTTGTATG
1 -AATATTGTAATTTTGTATT
7328243 AATATTGTAAT
1 AATATTGTAAT
7328254 ATTATAATTT
Statistics
Matches: 83, Mismatches: 15, Indels: 28
0.66 0.12 0.22
Matches are distributed among these distances:
15 5 0.06
16 5 0.06
17 2 0.02
18 3 0.04
19 31 0.37
20 1 0.01
21 20 0.24
23 1 0.01
24 3 0.04
25 3 0.04
26 2 0.02
27 7 0.08
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (19 bp):
AATATTGTAATTTTGTATT
Found at i:7328255 original size:27 final size:27
Alignment explanation
Indices: 7328224--7328307 Score: 150
Period size: 27 Copynumber: 3.1 Consensus size: 27
7328214 TTTTTATATG
7328224 AATATTATAATTTTGTATGAATATTGT
1 AATATTATAATTTTGTATGAATATTGT
7328251 AATATTATAATTTTGTATGAATATTGT
1 AATATTATAATTTTGTATGAATATTGT
* *
7328278 AATTTTGTAATTTTGTATGAATATTGT
1 AATATTATAATTTTGTATGAATATTGT
7328305 AAT
1 AAT
7328308 GTCGGGATAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (27 bp):
AATATTATAATTTTGTATGAATATTGT
Found at i:7328275 original size:19 final size:19
Alignment explanation
Indices: 7328193--7328307 Score: 89
Period size: 19 Copynumber: 6.1 Consensus size: 19
7328183 TTGGATTAGT
7328193 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
* *
7328212 ATTTTTTATATGAATATTATA
1 A--TTTTGTATGAATATTGTA
7328233 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
* *
7328252 A-TAT-TAT-AATTTTGTATGA
1 ATTTTGTATGAATATTG--T-A
* *
7328271 ATATTG--T-AATTTTGTA
1 ATTTTGTATGAATATTGTA
7328287 ATTTTGTATGAATATTGTA
1 ATTTTGTATGAATATTGTA
7328306 AT
1 AT
7328308 GTCGGGATAT
Statistics
Matches: 76, Mismatches: 10, Indels: 20
0.72 0.09 0.19
Matches are distributed among these distances:
16 12 0.16
17 4 0.05
18 4 0.05
19 38 0.50
20 1 0.01
21 17 0.22
ACGTcount: A:0.34, C:0.00, G:0.12, T:0.54
Consensus pattern (19 bp):
ATTTTGTATGAATATTGTA
Found at i:7328430 original size:60 final size:60
Alignment explanation
Indices: 7328348--7328469 Score: 167
Period size: 60 Copynumber: 2.0 Consensus size: 60
7328338 TGTATGAATG
* * * *
7328348 TTGTAATTATTTTATAAATAATTTGTTAGTAATTTAGGATTATGTTATAAATTTTTGTGT
1 TTGTAATTATTTTATAAATAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
*
7328408 TTGTAATTA-TTTA-AAATTTAATTTATTAGTAATTTAGGATTAAGCTATAAGTTGTTGTGT
1 TTGTAATTATTTTATAAA--TAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
7328468 TT
1 TT
7328470 AGTTTAATAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
58 3 0.05
59 4 0.07
60 48 0.87
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.53
Consensus pattern (60 bp):
TTGTAATTATTTTATAAATAATTTATTAGTAATTTAGGATTAAGCTATAAATTGTTGTGT
Found at i:7328547 original size:38 final size:38
Alignment explanation
Indices: 7328502--7328583 Score: 155
Period size: 38 Copynumber: 2.2 Consensus size: 38
7328492 CATATAAAGT
7328502 TTATAAAAAAATTAAAAATCATCTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATCTTATTAAAAGTTTAA
*
7328540 TTATAAAAAAATTAAAAATCATTTTATTAAAAGTTTAA
1 TTATAAAAAAATTAAAAATCATCTTATTAAAAGTTTAA
7328578 TTATAA
1 TTATAA
7328584 CTGACTTTTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.55, C:0.04, G:0.02, T:0.39
Consensus pattern (38 bp):
TTATAAAAAAATTAAAAATCATCTTATTAAAAGTTTAA
Found at i:7328661 original size:15 final size:15
Alignment explanation
Indices: 7328620--7328661 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
7328610 GTTAACTAAT
*
7328620 TTAATTTTTATATAA
1 TTAAATTTTATATAA
*
7328635 TGTAACTTTTATATAA
1 T-TAAATTTTATATAA
7328651 TTAAATTTTAT
1 TTAAATTTTAT
7328662 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTATATAA
Found at i:7328773 original size:21 final size:21
Alignment explanation
Indices: 7328730--7328792 Score: 72
Period size: 21 Copynumber: 3.0 Consensus size: 21
7328720 CATTTTTTTT
* * *
7328730 ATTACAAAATTACAAACACAAA
1 ATTACAATATT-CATACAAAAA
* *
7328752 ATTATAATATTCATATAAAAA
1 ATTACAATATTCATACAAAAA
7328773 ATTACAATATTCATACAAAA
1 ATTACAATATTCATACAAAA
7328793 TACTAATCCA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
21 25 0.74
22 9 0.26
ACGTcount: A:0.59, C:0.13, G:0.00, T:0.29
Consensus pattern (21 bp):
ATTACAATATTCATACAAAAA
Done.