Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 28 of 186
Found at i:8316060 original size:86 final size:86
Alignment explanation
Indices: 8315952--8316122 Score: 297
Period size: 86 Copynumber: 2.0 Consensus size: 86
8315942 ATTAAAATTG
*
8315952 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATCAATTTCACATTTTA
1 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
*
8316017 TCTTTAAAATAAATTTTATTA
66 TCTTGAAAATAAATTTTATTA
*
8316038 AATTATTAATTATGCTATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
1 AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
**
8316103 TCTTGAAAATAGCTTTTATT
66 TCTTGAAAATAAATTTTATT
8316123 GAAAAATCAC
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 80 1.00
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.48
Consensus pattern (86 bp):
AATTATTAATTATGCCATAAAATATTCGTGTTAAAATTTTATATTGGTATAAATTTCACATTTTA
TCTTGAAAATAAATTTTATTA
Found at i:8320404 original size:16 final size:16
Alignment explanation
Indices: 8320367--8320408 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
8320357 AAGACTTGTT
*
8320367 TTTTATT-TTAATTTA
1 TTTTATTATTTATTTA
* *
8320382 ATGTATTATTTATTTA
1 TTTTATTATTTATTTA
8320398 TTTTATTATTT
1 TTTTATTATTT
8320409 TTCACATGTA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 5 0.24
16 16 0.76
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.71
Consensus pattern (16 bp):
TTTTATTATTTATTTA
Found at i:8320964 original size:8 final size:9
Alignment explanation
Indices: 8320935--8320967 Score: 59
Period size: 9 Copynumber: 3.8 Consensus size: 9
8320925 TTTAAACGGA
8320935 TTTAAATAT
1 TTTAAATAT
8320944 TTTAAATAT
1 TTTAAATAT
8320953 TTTAAATA-
1 TTTAAATAT
8320961 TTTAAAT
1 TTTAAAT
8320968 TTAAATCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
TTTAAATAT
Found at i:8322058 original size:7 final size:8
Alignment explanation
Indices: 8322042--8322066 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8322032 GGAAAGAGAT
8322042 AAAATAAA
1 AAAATAAA
8322050 AAAATAAA
1 AAAATAAA
8322058 AAAATAAA
1 AAAATAAA
8322066 A
1 A
8322067 GATGAAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AAAATAAA
Found at i:8322314 original size:15 final size:16
Alignment explanation
Indices: 8322294--8322323 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8322284 ATCAATCTAA
8322294 AATATTTTA-TAAATT
1 AATATTTTATTAAATT
8322309 AATATTTTATTAAAT
1 AATATTTTATTAAAT
8322324 GAATGAAAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
AATATTTTATTAAATT
Found at i:8333838 original size:40 final size:40
Alignment explanation
Indices: 8333783--8333865 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
8333773 GGACACTATC
8333783 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
1 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
8333823 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
1 ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
8333863 ATC
1 ATC
8333866 CTATGCTATG
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (40 bp):
ATCAAGTTATTGCTTGACATCGCTCCATGACCCTACAATA
Found at i:8334177 original size:21 final size:21
Alignment explanation
Indices: 8334148--8334187 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
8334138 GAAGAATTGC
* *
8334148 ATTCGGAATCAAAGTCAGACT
1 ATTCAGAATCAAAGGCAGACT
*
8334169 ATTCAGAATCCAAGGCAGA
1 ATTCAGAATCAAAGGCAGA
8334188 AGCAACGAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (21 bp):
ATTCAGAATCAAAGGCAGACT
Found at i:8334964 original size:22 final size:23
Alignment explanation
Indices: 8334920--8334964 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
8334910 TTTATACTTT
* *
8334920 TATTTTTAGAAATTTAATCATTC
1 TATTTTTACAAATTTAATAATTC
*
8334943 TATTTTT-CAAATTTCATAATTC
1 TATTTTTACAAATTTAATAATTC
8334965 AAATTCAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.53
Consensus pattern (23 bp):
TATTTTTACAAATTTAATAATTC
Found at i:8335749 original size:11 final size:11
Alignment explanation
Indices: 8335735--8335778 Score: 56
Period size: 11 Copynumber: 4.2 Consensus size: 11
8335725 AATTTTCTTT
*
8335735 ATTTTTTTAGA
1 ATTTTTTTAAA
8335746 ATTTTTTTAAA
1 ATTTTTTTAAA
8335757 A--TTTTTAAA
1 ATTTTTTTAAA
*
8335766 ATTTTTTAAAA
1 ATTTTTTTAAA
8335777 AT
1 AT
8335779 ATAAAATTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 9 0.31
11 20 0.69
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (11 bp):
ATTTTTTTAAA
Found at i:8335761 original size:20 final size:20
Alignment explanation
Indices: 8335738--8335778 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
8335728 TTTCTTTATT
* *
8335738 TTTTTAGAATTTTTTTAAAA
1 TTTTTAAAATTTTTTAAAAA
8335758 TTTTTAAAATTTTTTAAAAA
1 TTTTTAAAATTTTTTAAAAA
8335778 T
1 T
8335779 ATAAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (20 bp):
TTTTTAAAATTTTTTAAAAA
Found at i:8335776 original size:10 final size:10
Alignment explanation
Indices: 8335737--8335776 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
8335727 TTTTCTTTAT
*
8335737 TTTTTTAGAAT
1 TTTTTTA-AAA
8335748 TTTTTTAAAA
1 TTTTTTAAAA
8335758 -TTTTTAAAA
1 TTTTTTAAAA
8335767 TTTTTTAAAA
1 TTTTTTAAAA
8335777 ATATAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
9 9 0.33
10 11 0.41
11 7 0.26
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.60
Consensus pattern (10 bp):
TTTTTTAAAA
Found at i:8335783 original size:18 final size:19
Alignment explanation
Indices: 8335748--8335787 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
8335738 TTTTTAGAAT
* *
8335748 TTTTTTAAAATTTTTAAAA
1 TTTTTTAAAATATATAAAA
8335767 TTTTTTAAAA-ATATAAAA
1 TTTTTTAAAATATATAAAA
8335785 TTT
1 TTT
8335788 AGAATTTTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTTTAAAATATATAAAA
Found at i:8339558 original size:38 final size:38
Alignment explanation
Indices: 8339516--8339593 Score: 138
Period size: 38 Copynumber: 2.1 Consensus size: 38
8339506 TTGGAATAAT
8339516 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
1 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
* *
8339554 TTGAGTTTAAATCATCATTGTATCCTAAAAAATAGCAC
1 TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
8339592 TT
1 TT
8339594 ATGGTATGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.40, C:0.17, G:0.10, T:0.33
Consensus pattern (38 bp):
TTGAGTTTAAATCATCATTGTACCCAAAAAAATAGCAC
Found at i:8340051 original size:29 final size:28
Alignment explanation
Indices: 8339980--8340055 Score: 75
Period size: 30 Copynumber: 2.6 Consensus size: 28
8339970 ATTGTATTTT
*
8339980 ATTTTTTTATTTAAAAAAAAGGTAAATTA
1 ATTTTTCTA-TTAAAAAAAAGGTAAATTA
8340009 ATCTTTGTAC-ATTAAAAAAAA-GTACAAATTA
1 AT-TTT-T-CTATTAAAAAAAAGGT--AAATTA
8340040 ATTTTTCTATTAAAAA
1 ATTTTTCTATTAAAAA
8340056 TTTCATCTAC
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
28 1 0.03
29 13 0.32
30 16 0.40
31 10 0.25
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (28 bp):
ATTTTTCTATTAAAAAAAAGGTAAATTA
Found at i:8340868 original size:32 final size:32
Alignment explanation
Indices: 8340832--8340894 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
8340822 TTAATCATTA
8340832 TTTATAAACTATTATAATT-CTTAATAATTTTT
1 TTTAT-AACTATTATAATTACTTAATAATTTTT
* * *
8340864 TTTATAATTTTTATAATTATTTAATAATTTT
1 TTTATAACTATTATAATTACTTAATAATTTT
8340895 GAGAAACTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 11 0.41
32 16 0.59
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (32 bp):
TTTATAACTATTATAATTACTTAATAATTTTT
Found at i:8340969 original size:10 final size:10
Alignment explanation
Indices: 8340954--8341005 Score: 54
Period size: 10 Copynumber: 5.4 Consensus size: 10
8340944 AAAAACATTG
8340954 TTTTTAATAA
1 TTTTTAATAA
*
8340964 TTTTTAGT-A
1 TTTTTAATAA
**
8340973 TTTTTTTTAA
1 TTTTTAATAA
8340983 TTTTT-ATAA
1 TTTTTAATAA
*
8340992 TTCTTAATAA
1 TTTTTAATAA
8341002 TTTT
1 TTTT
8341006 AAACAGTTTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
9 14 0.41
10 20 0.59
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:8341002 original size:19 final size:19
Alignment explanation
Indices: 8340957--8341005 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
8340947 AACATTGTTT
*
8340957 TTAATAATTTTTAGTATTT
1 TTAATAATTTTTAGTATTC
**
8340976 TTTTTAATTTTTA-TAATTC
1 TTAATAATTTTTAGT-ATTC
8340995 TTAATAATTTT
1 TTAATAATTTT
8341006 AAACAGTTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
18 1 0.04
19 23 0.96
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (19 bp):
TTAATAATTTTTAGTATTC
Found at i:8342471 original size:17 final size:18
Alignment explanation
Indices: 8342437--8342475 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
8342427 GCTAGCATTT
*
8342437 AATATATAAATAATATAA
1 AATATAAAAATAATATAA
8342455 AATATAAAAAT-ATATAA
1 AATATAAAAATAATATAA
8342472 AATA
1 AATA
8342476 ATGTAATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATATAAAAATAATATAA
Found at i:8342750 original size:5 final size:5
Alignment explanation
Indices: 8342736--8342807 Score: 55
Period size: 5 Copynumber: 15.0 Consensus size: 5
8342726 ATACATCTAC
* * * *
8342736 AATAT AATAT CATAT AATAT AATAA AATTT AAT-T ACATAT AATTT AA-A-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT
8342784 AATA- AATAAT AATA- AATAT AATAT
1 AATAT AAT-AT AATAT AATAT AATAT
8342808 GATGGATAAT
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
3 2 0.04
4 10 0.19
5 37 0.69
6 5 0.09
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:8344901 original size:206 final size:206
Alignment explanation
Indices: 8344528--8345281 Score: 1217
Period size: 206 Copynumber: 3.7 Consensus size: 206
8344518 AAATCTGCTT
* * * * *
8344528 CTTCGATTTGTTTTCTGACAATACAGAGATACCAAATCATCTTAGATTTGCTTCAACATAAACAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
8344593 ATGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
* * ** * *
8344658 GGATCTACTTCAGTATAAACATATGAAGGCCAGATCTGCGATGTGTCTGCTCTCCGTCGAATATA
131 AGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATATA
*
8344723 GAGACACCAAA
196 GAGACGCCAAA
* *
8344734 CTTCAATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCACCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
8344799 GTAAAAGCCAAATCAGCTATGGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
8344863 TAGATCTGCTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATAT
130 TAGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATAT
8344928 AGAGACGCCAAA
195 AGAGACGCCAAA
*
8344940 CTTCGATTTGTTCTCTGACAATACAAAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
* *
8345005 GTGAAAGTCAAATCATCTATGGT-TTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
66 GTGAAAGCCAAATCAGCTAT-GTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCT
*
8345069 TAGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTTTCCGTCGAATAT
130 TAGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATAT
8345134 AGAGACGCCAAA
195 AGAGACGCCAAA
* * *
8345146 CTTCTATTTATTTTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
1 CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
*
8345211 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA-CTATCT
66 GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATC-ATCT
*
8345275 TGGATCT
130 TAGATCT
8345282 TGCTTCAGCC
Statistics
Matches: 512, Mismatches: 33, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
205 3 0.01
206 507 0.99
207 2 0.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (206 bp):
CTTCGATTTGTTCTCTGACAATACAGAGATGCCAAATCATCTTAGATTTGCTTCATCGTAAGCAC
GTGAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAATCATCTT
AGATCTACTTCAGTATAAACATCTGAAGGTTAGATCTGCTATGTGTCTACTCTCCGTCGAATATA
GAGACGCCAAA
Found at i:8357119 original size:17 final size:18
Alignment explanation
Indices: 8357085--8357123 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
8357075 GCTAGCATTT
*
8357085 AATATATAAATAATATAA
1 AATATAAAAATAATATAA
8357103 AATATAAAAAT-ATATAA
1 AATATAAAAATAATATAA
8357120 AATA
1 AATA
8357124 ATGTAATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (18 bp):
AATATAAAAATAATATAA
Found at i:8357400 original size:5 final size:5
Alignment explanation
Indices: 8357386--8357447 Score: 51
Period size: 5 Copynumber: 13.0 Consensus size: 5
8357376 ATACATCTTC
* * * *
8357386 AATAT AATAT CATAT AATAT AATAA AATTT AAT-T ACATAT AATTT AA-A-
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT A-ATAT AATAT AATAT
8357434 AATA- AATAT AATAT
1 AATAT AATAT AATAT
8357448 GATGGATAAT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
3 2 0.04
4 7 0.15
5 35 0.76
6 2 0.04
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (5 bp):
AATAT
Found at i:8363174 original size:12 final size:12
Alignment explanation
Indices: 8363157--8363184 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8363147 AACCCAGCAT
8363157 CAACTTATCTTA
1 CAACTTATCTTA
8363169 CAACTTATCTTA
1 CAACTTATCTTA
8363181 CAAC
1 CAAC
8363185 CACCCAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.29, G:0.00, T:0.36
Consensus pattern (12 bp):
CAACTTATCTTA
Found at i:8365046 original size:3 final size:3
Alignment explanation
Indices: 8365038--8365067 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
8365028 AAATGAGTCA
*
8365038 TTC TTC TTC TTC TTT TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
8365068 ACGGATGTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (3 bp):
TTC
Found at i:8367139 original size:53 final size:56
Alignment explanation
Indices: 8367037--8367148 Score: 135
Period size: 53 Copynumber: 2.1 Consensus size: 56
8367027 ATTAAACACG
* * *
8367037 AATTAGAAAACTTAAACTTTCTAAAAATAATTAAAATAAAAGTATATTTAGAAAA-A
1 AATTAAAAAACTTAAACTTCCTAAAAATAATTAAAATAAAACTATATTTA-AAAATA
*
8367093 AATTAAAAAAC-TAAA-TTCCTTAAAA-AATTAAAATAAAATCTA-ATTTAAAAATA
1 AATTAAAAAACTTAAACTTCCTAAAAATAATTAAAATAAAA-CTATATTTAAAAATA
8367146 AAT
1 AAT
8367149 ACTTAAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
52 4 0.08
53 22 0.44
54 10 0.20
55 4 0.08
56 10 0.20
ACGTcount: A:0.61, C:0.06, G:0.03, T:0.30
Consensus pattern (56 bp):
AATTAAAAAACTTAAACTTCCTAAAAATAATTAAAATAAAACTATATTTAAAAATA
Found at i:8369029 original size:26 final size:26
Alignment explanation
Indices: 8368982--8369040 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 26
8368972 CTTTATACAT
* *
8368982 AATAGATTTTAAAAATTATATATAAA
1 AATAGATTTAAAAAAATATATATAAA
8369008 AATAGATTTAAAAGAAATTATATATATAA
1 AATAGATTTAAAA-AAA-TATATATA-AA
8369037 AATA
1 AATA
8369041 ACATGGAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
26 12 0.43
27 2 0.07
28 8 0.29
29 6 0.21
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (26 bp):
AATAGATTTAAAAAAATATATATAAA
Found at i:8372147 original size:19 final size:19
Alignment explanation
Indices: 8372123--8372161 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
8372113 CTTCGGCTAC
8372123 ACTTATCTGATCAAGGACA
1 ACTTATCTGATCAAGGACA
8372142 ACTTATCTGATCAAGGACA
1 ACTTATCTGATCAAGGACA
8372161 A
1 A
8372162 ATGGCAAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (19 bp):
ACTTATCTGATCAAGGACA
Found at i:8372210 original size:31 final size:31
Alignment explanation
Indices: 8372172--8372230 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
8372162 ATGGCAAGTA
**
8372172 AAAAGTGGTAGCTTCGGTTACCTGATCAATG
1 AAAAGTGGTAGCTTCGACTACCTGATCAATG
*
8372203 AAAAGTGGTAGCTTTGACTACCTGATCA
1 AAAAGTGGTAGCTTCGACTACCTGATCA
8372231 TCAGCTACTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAAGTGGTAGCTTCGACTACCTGATCAATG
Found at i:8372280 original size:31 final size:31
Alignment explanation
Indices: 8372234--8372300 Score: 80
Period size: 31 Copynumber: 2.2 Consensus size: 31
8372224 CTGATCATCA
* * *
8372234 GCTACTTGATTAGTGAAAAATGGTAGCTCCG
1 GCTACCTGATCAGTGAAAAATGATAGCTCCG
* * *
8372265 GCTACCTGATCAGTGAATAGTGATAGCTTCG
1 GCTACCTGATCAGTGAAAAATGATAGCTCCG
8372296 GCTAC
1 GCTAC
8372301 AAGTGACAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (31 bp):
GCTACCTGATCAGTGAAAAATGATAGCTCCG
Found at i:8383928 original size:46 final size:46
Alignment explanation
Indices: 8383856--8384114 Score: 340
Period size: 46 Copynumber: 5.6 Consensus size: 46
8383846 TCTGATATGG
* *
8383856 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGA
**
8383902 AATGAGTAAGACCATGAATGAAAGATACCATGGCAACATGACATGA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGA
* * **
8383948 AATGAGTAAGATCATGTTTGAAAGATACCATGGCAACATGACGGGAA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-A
* * * **
8383995 AATGAATAACACCATGGTTGAAAGATACCATGGCAACGTGGTATGA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGA
*
8384041 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATG-A
* * *
8384087 AACGAGTAAAACCATAGTTGAAAGATAC
1 AATGAGTAAGACCATGGTTGAAAGATAC
8384115 TATGACATCA
Statistics
Matches: 185, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
45 1 0.01
46 147 0.79
47 37 0.20
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (46 bp):
AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACATGA
Found at i:8384026 original size:93 final size:92
Alignment explanation
Indices: 8383856--8384114 Score: 349
Period size: 93 Copynumber: 2.8 Consensus size: 92
8383846 TCTGATATGG
* * * **
8383856 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATG-AAATGAGTAAGACCATGAA
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAGTAAAACCATGGT
8383920 TGAAAGATACCATGGCAACATGACATGA
65 TGAAAGATACCATGGCAACATGACATGA
* * * * *
8383948 AATGAGTAAGATCATGTTTGAAAGATACCATGGCAACATGACGGGAAAATGAATAACACCATGGT
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGAC-AGAAAATGAGTAAAACCATGGT
* **
8384013 TGAAAGATACCATGGCAACGTGGTATGA
65 TGAAAGATACCATGGCAACATGACATGA
* * *
8384041 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAACGAGTAAAACCATAGTT
1 AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAAACCATGGTT
8384106 GAAAGATAC
66 GAAAGATAC
8384115 TATGACATCA
Statistics
Matches: 145, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
92 66 0.46
93 79 0.54
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.20
Consensus pattern (92 bp):
AATGAGTAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAAAATGAGTAAAACCATGGTT
GAAAGATACCATGGCAACATGACATGA
Found at i:8391267 original size:111 final size:111
Alignment explanation
Indices: 8391068--8391267 Score: 258
Period size: 111 Copynumber: 1.8 Consensus size: 111
8391058 AAAGTATAGA
* * * * *
8391068 TAATATTAAATTTAAATGTTTAAAAAGCAGAATAATAATAAATAAATAAATGGACAAAACAAATA
1 TAATATTAAATTTAAATATTTAAAAAGCAAAAGAATAATAAATAAATAAATAGACAAAACAAAAA
** **
8391133 ATATTGAATTTAAGTATTTAAAAAAGGTAAAAGAAAAAGAAACAAG
66 ATATAAAATTTAAGTATAAAAAAAAGGTAAAAGAAAAAGAAACAAG
* * * * *
8391179 TAATATTAAATTTAATTATTT-AAAAGTAAAAGAATAAATAAATAAATAGATAGATAAGACAAAA
1 TAATATTAAATTTAAATATTTAAAAAGCAAAAGAAT-AATAAATAAATAAATAGACAAAACAAAA
8391243 AATATAAAATTTAAGTATAAAAAAA
65 AATATAAAATTTAAGTATAAAAAAA
8391268 TAAATGAATA
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
110 11 0.15
111 63 0.85
ACGTcount: A:0.61, C:0.03, G:0.09, T:0.28
Consensus pattern (111 bp):
TAATATTAAATTTAAATATTTAAAAAGCAAAAGAATAATAAATAAATAAATAGACAAAACAAAAA
ATATAAAATTTAAGTATAAAAAAAAGGTAAAAGAAAAAGAAACAAG
Found at i:8391279 original size:63 final size:63
Alignment explanation
Indices: 8391180--8391363 Score: 181
Period size: 63 Copynumber: 2.8 Consensus size: 63
8391170 AGAAACAAGT
* * ** * *
8391180 AATATTAAATTTAATTATTTAAAAGTAAAAGAATAAATAAATAAATAGATAGATAAGACAAAA
1 AATATAAAATTTAAGTATAAAAAAATAAAAGAATAAATAAATAAATAAATAGATAAGACAAAA
* *
8391243 AATATAAAATTTAAGTATAAAAAAATAAATGAATAAATAACTAAATAAATAGATAAGACAACTAT
1 AATATAAAATTTAAGTATAAAAAAATAAAAGAATAAATAAATAAATAAATAGATAAGAC-A--A-
8391308 GAA
62 -AA
* * * *
8391311 TAATATCAAATTTAAATATTAAAAAAGGTAAAATAAT-AATAAATAAATAAATA
1 -AATATAAAATTTAAGTA-TAAAAAA-ATAAAAGAATAAATAAATAAATAAATA
8391364 AAATTCTTCA
Statistics
Matches: 99, Mismatches: 14, Indels: 9
0.81 0.11 0.07
Matches are distributed among these distances:
63 51 0.52
64 1 0.01
66 1 0.01
68 2 0.02
69 15 0.15
70 22 0.22
71 7 0.07
ACGTcount: A:0.63, C:0.03, G:0.07, T:0.28
Consensus pattern (63 bp):
AATATAAAATTTAAGTATAAAAAAATAAAAGAATAAATAAATAAATAAATAGATAAGACAAAA
Found at i:8392665 original size:15 final size:16
Alignment explanation
Indices: 8392645--8392689 Score: 56
Period size: 18 Copynumber: 2.8 Consensus size: 16
8392635 GGACTATTTT
8392645 TTTTA-TTTTATTATC
1 TTTTATTTTTATTATC
*
8392660 TTTTATTTTTATTATT
1 TTTTATTTTTATTATC
8392676 TGGTTTATTTTTAT
1 T--TTTATTTTTAT
8392690 CCTGGCCGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 5 0.19
16 10 0.38
18 11 0.42
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (16 bp):
TTTTATTTTTATTATC
Found at i:8393147 original size:51 final size:51
Alignment explanation
Indices: 8393079--8393305 Score: 183
Period size: 51 Copynumber: 4.6 Consensus size: 51
8393069 TTCAGTCTGC
*
8393079 TCCAC-GCAACTTCAGGGAGATAAGATTTGTAGCTTGTAGCTTTAGTCTAT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
* * * * *
8393129 TCCATTGCAACTTCAGGGAGATAAGACTTGTTA--TAGTAGA-TTTAATCCGA-
1 TCCACTGCAACTTCAGGGAGATAAGATTTG-TAGCTTGTA-ACTTTAGT-CTAT
* * * * * * *
8393179 CCCACTGCAACTTCAAAGG-TATAAGACTTGTTGCTT-CAAC-CT-G--T-T
1 TCCACTGCAACTTC-AGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
*
8393224 T-CACTGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
* *
8393274 TCCACTGCAACTTCAGAGAGATAGGATTTGTA
1 TCCACTGCAACTTCAGGGAGATAAGATTTGTA
8393306 TCTTCAATCC
Statistics
Matches: 135, Mismatches: 25, Indels: 33
0.70 0.13 0.17
Matches are distributed among these distances:
43 4 0.03
44 26 0.19
45 3 0.02
46 1 0.01
47 1 0.01
49 4 0.03
50 38 0.28
51 56 0.41
52 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.33
Consensus pattern (51 bp):
TCCACTGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTAT
Found at i:8393283 original size:145 final size:144
Alignment explanation
Indices: 8392922--8393296 Score: 527
Period size: 144 Copynumber: 2.6 Consensus size: 144
8392912 AATATTAGTA
* *
8392922 GCTTCAATCTGCTTT-ACCGCAACTTCAAGGAGATAAGATTTGTAACATGTAACTTTAGTCTATT
1 GCTTCAATCTG-TTTCA-CGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATT
* * * * *
8392986 CCACTGGAACTTCAGAGAGATAAGACTTGCTATGGTAGATTTAATCTGACCAACTGTAACTTCAG
64 CCACTGCAACTTCAGAGAGATAAGACTTGCTATAGTAGATTTAATCCGACCAACTGCAACTTCAA
*
8393051 AGCTATAGGACTTGCC
129 AGCTATAAGACTTGCC
* * * * *
8393067 GCTTCAGTCTGCTCCACGCAACTTCAGGGAGATAAGATTTGTAGCTTGTAGCTTTAGTCTATTCC
1 GCTTCAATCTGTTTCACGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATTCC
* * * *
8393132 ATTGCAACTTCAGGGAGATAAGACTTGTTATAGTAGATTTAATCCGACCCACTGCAACTTCAAAG
66 ACTGCAACTTCAGAGAGATAAGACTTGCTATAGTAGATTTAATCCGACCAACTGCAACTTCAAAG
* **
8393197 GTATAAGACTTGTT
131 CTATAAGACTTGCC
*
8393211 GCTTCAACCTGTTTCACTGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATTC
1 GCTTCAATCTGTTTCAC-GCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATTC
8393276 CACTGCAACTTCAGAGAGATA
65 CACTGCAACTTCAGAGAGATA
8393297 GGATTTGTAT
Statistics
Matches: 200, Mismatches: 28, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
144 125 0.62
145 75 0.38
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (144 bp):
GCTTCAATCTGTTTCACGCAACTTCAAGGAGATAAGATTTGTAGCTTGTAACTTTAGTCTATTCC
ACTGCAACTTCAGAGAGATAAGACTTGCTATAGTAGATTTAATCCGACCAACTGCAACTTCAAAG
CTATAAGACTTGCC
Found at i:8393312 original size:95 final size:95
Alignment explanation
Indices: 8393180--8393353 Score: 210
Period size: 95 Copynumber: 1.8 Consensus size: 95
8393170 TTAATCCGAC
** *
8393180 CCACTGCAACTTCAAAGGTATAAGACTTGTTGCTTCAA-CCTGTTTCACTGCAACTTCAAGGAGA
1 CCACTGCAACTTCAAAGGTATAAGACTTGTTGCTTCAATCC-ACTCCACTGCAACTTCAAGGAGA
*
8393244 TAAGATTTGTAGCTTGTAACTTTAGTCTATT
65 TAAGATTTATAGCTTGTAACTTTAGTCTATT
* * * * *
8393275 CCACTGCAACTTCAGAGAG-ATAGGATTTGTAT-CTTCAATCCACTCCACTGCAACTTTAGGGAG
1 CCACTGCAACTTCAAAG-GTATAAGACTTGT-TGCTTCAATCCACTCCACTGCAACTTCAAGGAG
*
8393338 ATGAGATTTATAGCTT
64 ATAAGATTTATAGCTT
8393354 CAACCCGTTC
Statistics
Matches: 66, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
95 62 0.94
96 4 0.06
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.33
Consensus pattern (95 bp):
CCACTGCAACTTCAAAGGTATAAGACTTGTTGCTTCAATCCACTCCACTGCAACTTCAAGGAGAT
AAGATTTATAGCTTGTAACTTTAGTCTATT
Found at i:8393324 original size:44 final size:45
Alignment explanation
Indices: 8393274--8393397 Score: 146
Period size: 44 Copynumber: 2.8 Consensus size: 45
8393264 TTTAGTCTAT
* * *
8393274 TCCACTGCAACTTCAGAGAGATAG-GATTTGTATCTTCAATCCAC
1 TCCACTGCAACTTCAGAGAGATAGAGATTTATAGCTTCAACCCAC
* * **
8393318 TCCACTGCAACTTTAGGGAGAT-GAGATTTATAGCTTCAACCCGT
1 TCCACTGCAACTTCAGAGAGATAGAGATTTATAGCTTCAACCCAC
* *
8393362 TCCACTGCAAGTTCAGAGAGATA-AGGTTTATAGCTT
1 TCCACTGCAACTTCAGAGAGATAGAGATTTATAGCTT
8393398 TAATCTGCTC
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 1 0.01
44 66 0.99
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (45 bp):
TCCACTGCAACTTCAGAGAGATAGAGATTTATAGCTTCAACCCAC
Found at i:8396564 original size:44 final size:45
Alignment explanation
Indices: 8396458--8396566 Score: 123
Period size: 44 Copynumber: 2.4 Consensus size: 45
8396448 ATGTTACAAC
* * *
8396458 TGCAACTTCAAAGAGATAAGATTTGCTAACTTCAATCTACTCCAT
1 TGCAACTTCAAGGAGATAAGACTTGCTAACTTCAACCTACTCCAT
* * * *
8396503 TGCAACTT-TAGGTAGATAAGACTTG-TGACTTCAACCTGCTCTAT
1 TGCAACTTCAAGG-AGATAAGACTTGCTAACTTCAACCTACTCCAT
*
8396547 TGTAACTTCAAGGAGATAAG
1 TGCAACTTCAAGGAGATAAG
8396567 GATTATAGCT
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
44 31 0.58
45 22 0.42
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (45 bp):
TGCAACTTCAAGGAGATAAGACTTGCTAACTTCAACCTACTCCAT
Found at i:8399577 original size:100 final size:103
Alignment explanation
Indices: 8399398--8399703 Score: 377
Period size: 100 Copynumber: 2.9 Consensus size: 103
8399388 TGATAATAAC
** *
8399398 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGT-CTGGTGCCCATGCCATG
* *
8399463 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
64 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
*
8399500 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCT-GGTGCCCATGCCATGT
8399564 CCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 CCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* * *
8399605 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGCCAATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--G-TC-T--GG-TGCCCATG
* *
8399670 CCATGTCCCAGACATGGTCTTACATGGGATCTCT
59 CCATGTCCCAGACATGGTCTTACAGGGGACCTCT
8399704 TTACCCAAAT
Statistics
Matches: 179, Mismatches: 12, Indels: 16
0.86 0.06 0.08
Matches are distributed among these distances:
99 1 0.01
100 50 0.28
101 36 0.20
103 3 0.02
104 1 0.01
105 2 0.01
106 41 0.23
108 1 0.01
109 2 0.01
110 1 0.01
111 2 0.01
112 39 0.22
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.26
Consensus pattern (103 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTGGTGCCCATGCCATGTC
CCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:8399641 original size:56 final size:52
Alignment explanation
Indices: 8399399--8399703 Score: 354
Period size: 56 Copynumber: 5.8 Consensus size: 52
8399389 GATAATAACA
* * **
8399399 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGA--T-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTC-TGATCTAGG
* * *
8399450 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTC--ATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCTGATCTAGG
* * *
8399500 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-G-TCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCTGATCTAGG
*
8399550 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC-TGATC-T-AGG
8399605 ATGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC-TGATC-T-AGG
* *
8399661 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
8399704 TTACCCAAAT
Statistics
Matches: 227, Mismatches: 17, Indels: 15
0.88 0.07 0.06
Matches are distributed among these distances:
47 1 0.00
49 1 0.00
50 91 0.40
51 33 0.15
52 1 0.00
53 2 0.01
54 1 0.00
55 2 0.01
56 95 0.42
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (52 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCTGATCTAGG
Found at i:8399819 original size:13 final size:13
Alignment explanation
Indices: 8399798--8399829 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
8399788 GCTTGGATCA
*
8399798 TCATCAAATAAAT
1 TCATAAAATAAAT
8399811 TCATAAAATAAAT
1 TCATAAAATAAAT
8399824 TCATAA
1 TCATAA
8399830 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:8400076 original size:30 final size:30
Alignment explanation
Indices: 8400041--8400098 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
8400031 CCTCGACTCT
*
8400041 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
8400071 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
8400099 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:8405372 original size:16 final size:16
Alignment explanation
Indices: 8405351--8405385 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
8405341 AAGCCAAATC
8405351 ACATGGCTTAGCTTAA
1 ACATGGCTTAGCTTAA
8405367 ACATGGCTTAGCTTAA
1 ACATGGCTTAGCTTAA
8405383 ACA
1 ACA
8405386 CAAAAATATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (16 bp):
ACATGGCTTAGCTTAA
Found at i:8406432 original size:45 final size:45
Alignment explanation
Indices: 8406361--8406453 Score: 107
Period size: 45 Copynumber: 2.1 Consensus size: 45
8406351 CCTGAGCTGA
* * **
8406361 TGAATAGTAAGCTCTATTGAGCTGAAACGATAAACTCTTTCGAGC
1 TGAACAGTAAGCTCTATCGAGCTGAAACGATAAACTCTCACGAGC
* * *
8406406 TGAACAGTAAGCTC-ATACGAGTTGAAACGGTAAGCTCTCACGAGC
1 TGAACAGTAAGCTCTAT-CGAGCTGAAACGATAAACTCTCACGAGC
8406451 TGA
1 TGA
8406454 TATATCGGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 2 0.05
45 38 0.95
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (45 bp):
TGAACAGTAAGCTCTATCGAGCTGAAACGATAAACTCTCACGAGC
Found at i:8406442 original size:23 final size:27
Alignment explanation
Indices: 8406412--8406470 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 27
8406402 GAGCTGAACA
*
8406412 GTAAGCTCAT-ACGAGTTGA-A-A-CG
1 GTAAGCTCATCACGAGCTGATATATCG
8406435 GTAAGCTC-TCACGAGCTGATATATCG
1 GTAAGCTCATCACGAGCTGATATATCG
8406461 GTAAGCTCAT
1 GTAAGCTCAT
8406471 GTGAGCTGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 1 0.03
23 16 0.53
24 1 0.03
25 1 0.03
26 10 0.33
27 1 0.03
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (27 bp):
GTAAGCTCATCACGAGCTGATATATCG
Found at i:8411163 original size:23 final size:23
Alignment explanation
Indices: 8411132--8411221 Score: 92
Period size: 23 Copynumber: 3.9 Consensus size: 23
8411122 ATACACAAAT
* * *
8411132 TCCAACCAAACACACTAGAATGA
1 TCCATCCAAACACACCAGAATAA
* *
8411155 TCCATCCAAACACACCAAAACAA
1 TCCATCCAAACACACCAGAATAA
*
8411178 TCC-TCCCAAACACACTAGAATAA
1 TCCAT-CCAAACACACCAGAATAA
* *
8411201 TCCACCCAAACAAACCAGAAT
1 TCCATCCAAACACACCAGAAT
8411222 GGCACTAAGT
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
22 1 0.02
23 53 0.98
ACGTcount: A:0.48, C:0.36, G:0.04, T:0.12
Consensus pattern (23 bp):
TCCATCCAAACACACCAGAATAA
Found at i:8411809 original size:25 final size:26
Alignment explanation
Indices: 8411775--8411823 Score: 75
Period size: 25 Copynumber: 1.9 Consensus size: 26
8411765 CACTCTCTGT
8411775 TTCTTTTTATGCT-TTGTTT-CTTTTA
1 TTCTTTTTATG-TGTTGTTTACTTTTA
8411800 TTCTTTTTATGTGTTGTTTACTTT
1 TTCTTTTTATGTGTTGTTTACTTT
8411824 ATTAGTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 1 0.05
25 17 0.77
26 4 0.18
ACGTcount: A:0.08, C:0.10, G:0.10, T:0.71
Consensus pattern (26 bp):
TTCTTTTTATGTGTTGTTTACTTTTA
Found at i:8411832 original size:25 final size:25
Alignment explanation
Indices: 8411779--8411834 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
8411769 CTCTGTTTCT
**
8411779 TTTTATGCTTTGTTTCTTTTATTCT
1 TTTTATGCTTTGTTTCTTTTATTAG
8411804 TTTTATG-TGTTGTTTAC-TTTATTAG
1 TTTTATGCT-TTGTTT-CTTTTATTAG
8411829 TTTTAT
1 TTTTAT
8411835 AATAATATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
24 1 0.04
25 25 0.93
26 1 0.04
ACGTcount: A:0.12, C:0.07, G:0.11, T:0.70
Consensus pattern (25 bp):
TTTTATGCTTTGTTTCTTTTATTAG
Found at i:8412016 original size:30 final size:28
Alignment explanation
Indices: 8411973--8412028 Score: 76
Period size: 30 Copynumber: 1.9 Consensus size: 28
8411963 CATAATTTAG
* *
8411973 TTTATTTTTATAATATAATATTTATAATAA
1 TTTAATTTAATAATAT-AT-TTTATAATAA
8412003 TTTAATTTAATAATATATTTTATAAT
1 TTTAATTTAATAATATATTTTATAAT
8412029 TAAATCATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 8 0.33
29 2 0.08
30 14 0.58
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (28 bp):
TTTAATTTAATAATATATTTTATAATAA
Found at i:8415505 original size:13 final size:14
Alignment explanation
Indices: 8415487--8415516 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
8415477 TTGTCTCTAA
8415487 CCCACCACTT-AGG
1 CCCACCACTTCAGG
8415500 CCCACCACTTCAGG
1 CCCACCACTTCAGG
8415514 CCC
1 CCC
8415517 TTCAGTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.20, C:0.53, G:0.13, T:0.13
Consensus pattern (14 bp):
CCCACCACTTCAGG
Found at i:8417106 original size:24 final size:24
Alignment explanation
Indices: 8417079--8417130 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8417069 TTAGTAAGTC
*
8417079 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8417103 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8417127 AAAT
1 AAAT
8417131 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8419078 original size:24 final size:24
Alignment explanation
Indices: 8419051--8419102 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
8419041 TTAGTAAGTC
*
8419051 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
8419075 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
8419099 AAAT
1 AAAT
8419103 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:8421034 original size:28 final size:27
Alignment explanation
Indices: 8420989--8421089 Score: 85
Period size: 28 Copynumber: 3.6 Consensus size: 27
8420979 AATTTTAATT
* * *
8420989 AAAAATTTTAAATATTAAAAATTAGAA
1 AAAAATGTAAAATATTAAAAAATAGAA
* *
8421016 AAAAATGTAGAAATGTTAAAAAATATATA
1 AAAAATGTA-AAATATTAAAAAATAGA-A
* *
8421045 AAAATTGTAAAATTTTATAAAAATAGTAA
1 AAAAATGTAAAATATTA-AAAAATAG-AA
*
8421074 AAAAATTATAAAATAT
1 AAAAA-TGTAAAATAT
8421090 ATAGAAATAT
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
27 7 0.12
28 21 0.36
29 21 0.36
30 9 0.16
ACGTcount: A:0.62, C:0.00, G:0.06, T:0.32
Consensus pattern (27 bp):
AAAAATGTAAAATATTAAAAAATAGAA
Found at i:8421037 original size:29 final size:29
Alignment explanation
Indices: 8421004--8421079 Score: 77
Period size: 29 Copynumber: 2.6 Consensus size: 29
8420994 TTTTAAATAT
8421004 TAAAAATTAGAAAAAAATGTAGAAATGTTA
1 TAAAAATTAGAAAAAAATGTA-AAATGTTA
* * *
8421034 -AAAAATATA-TAAAAATTGTAAAATTTTA
1 TAAAAAT-TAGAAAAAAATGTAAAATGTTA
8421062 TAAAAA-TAGTAAAAAAAT
1 TAAAAATTAG-AAAAAAAT
8421080 TATAAAATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
27 2 0.05
28 7 0.19
29 26 0.70
30 2 0.05
ACGTcount: A:0.63, C:0.00, G:0.08, T:0.29
Consensus pattern (29 bp):
TAAAAATTAGAAAAAAATGTAAAATGTTA
Found at i:8421048 original size:11 final size:10
Alignment explanation
Indices: 8421034--8421100 Score: 59
Period size: 10 Copynumber: 6.9 Consensus size: 10
8421024 AGAAATGTTA
8421034 AAAAATATAT
1 AAAAATATAT
*
8421044 AAAAAT-TGT
1 AAAAATATAT
* *
8421053 AAAATTTTAT
1 AAAAATATAT
*
8421063 AAAAATAGTAA
1 AAAAATA-TAT
8421074 AAAAAT-TAT
1 AAAAATATAT
8421083 -AAAATATAT
1 AAAAATATAT
*
8421092 AGAAATATA
1 AAAAATATA
8421101 AAATTTTATA
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
8 5 0.11
9 12 0.27
10 20 0.44
11 8 0.18
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (10 bp):
AAAAATATAT
Found at i:8421049 original size:20 final size:19
Alignment explanation
Indices: 8421026--8421086 Score: 61
Period size: 20 Copynumber: 3.1 Consensus size: 19
8421016 AAAAATGTAG
8421026 AAATGTTAAAAAATATATAA
1 AAATGTTAAAAAAT-TATAA
**
8421046 AAAT-TGTAAAATTTTATAA
1 AAATGT-TAAAAAATTATAA
*
8421065 AAATAGTAAAAAAATTATAA
1 AAAT-GTTAAAAAATTATAA
8421085 AA
1 AA
8421087 TATATAGAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
19 10 0.30
20 22 0.67
21 1 0.03
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (19 bp):
AAATGTTAAAAAATTATAA
Found at i:8421056 original size:19 final size:19
Alignment explanation
Indices: 8421034--8421100 Score: 64
Period size: 19 Copynumber: 3.5 Consensus size: 19
8421024 AGAAATGTTA
*
8421034 AAAAATATATAAAAATTGT
1 AAAAATATATAAAAATAGT
* *
8421053 AAAATTTTATAAAAATAGT
1 AAAAATATATAAAAATAGT
*
8421072 AAAAAAATTATAAAATATA-T
1 AAAAATA-TATAAAA-ATAGT
*
8421092 AGAAATATA
1 AAAAATATA
8421101 AAATTTTATA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
19 22 0.58
20 13 0.34
21 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.31
Consensus pattern (19 bp):
AAAAATATATAAAAATAGT
Found at i:8421092 original size:29 final size:27
Alignment explanation
Indices: 8420989--8421103 Score: 81
Period size: 28 Copynumber: 4.1 Consensus size: 27
8420979 AATTTTAATT
* *
8420989 AAAAATT-TTAAATATTAAAAATTAGAA
1 AAAAATTATAAAATATTAAAAA-TATAA
* * *
8421016 AAAAATGTA-GAAATGTTAAAAAATATAT
1 AAAAAT-TATAAAATATT-AAAAATATAA
* *
8421044 AAAAATTGTAAAATTTTATAAAAATAGTAA
1 AAAAATTATAAAA-TAT-TAAAAATA-TAA
*
8421074 AAAAATTATAAAATATATAGAAATATAA
1 AAAAATTATAAAATAT-TAAAAATATAA
8421102 AA
1 AA
8421104 TTTTATAAAA
Statistics
Matches: 70, Mismatches: 11, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
27 7 0.10
28 24 0.34
29 24 0.34
30 15 0.21
ACGTcount: A:0.63, C:0.00, G:0.06, T:0.30
Consensus pattern (27 bp):
AAAAATTATAAAATATTAAAAATATAA
Found at i:8421110 original size:10 final size:10
Alignment explanation
Indices: 8421097--8421122 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
8421087 TATATAGAAA
8421097 TATAAAATTT
1 TATAAAATTT
8421107 TATAAAATTT
1 TATAAAATTT
8421117 TATAAA
1 TATAAA
8421123 GTCGCAAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (10 bp):
TATAAAATTT
Found at i:8421154 original size:58 final size:56
Alignment explanation
Indices: 8421026--8421181 Score: 154
Period size: 58 Copynumber: 2.7 Consensus size: 56
8421016 AAAAATGTAG
** *
8421026 AAATGTTAAA-AAATATATAAAAATTGTAAAATTTTATAAAAATAGTAAAAAAATTATA
1 AAATG-TAAAGAAATATA-AAATTTTGTAAAATTTTAT-AAAATAGCAAAAAAATTATA
* * * * * *
8421084 AAATATATAGAAATATAAAATTTTATAAAATTTTATAAAGTCGCAAGAAAATTATACA
1 AAATGTAAAGAAATATAAAATTTTGTAAAATTTTATAAAATAGCAAAAAAATTAT--A
*
8421142 AAATGTAAAGAAATAT-AAATTTTGTAAATTTTTTATAAAA
1 AAATGTAAAGAAATATAAAATTTTGTAAA-ATTTTATAAAA
8421182 ATTATCGTAC
Statistics
Matches: 80, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
56 15 0.19
57 30 0.38
58 35 0.44
ACGTcount: A:0.57, C:0.02, G:0.06, T:0.35
Consensus pattern (56 bp):
AAATGTAAAGAAATATAAAATTTTGTAAAATTTTATAAAATAGCAAAAAAATTATA
Found at i:8421623 original size:87 final size:89
Alignment explanation
Indices: 8421460--8421624 Score: 239
Period size: 88 Copynumber: 1.9 Consensus size: 89
8421450 TTTTATTTTC
8421460 AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTGGAAAAAAAATAGGGGCTTA
1 AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTGGAAAAAAAATAGGGGCTTA
*
8421525 ATTTCTTTTTTTTGAAGAAGTTTG
66 ATTTCTATTTTTTGAAGAAGTTTG
* * * *
8421549 AGGGT-TTTTTTATGCATTTTAAAAGTTCAAGT-GCTAATTGAGTGCGAAAAAAAA-GGGGGCTT
1 AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTG-GAAAAAAAATAGGGGCTT
8421611 AATTGT-TATTTTTT
65 AATT-TCTATTTTTT
8421625 TAAAGTTTGA
Statistics
Matches: 69, Mismatches: 5, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
87 28 0.41
88 36 0.52
89 5 0.07
ACGTcount: A:0.32, C:0.08, G:0.21, T:0.40
Consensus pattern (89 bp):
AGGGTCTTTTTTATGCATTTTAAAAGTTCAAATACCCAATTGAGTGGAAAAAAAATAGGGGCTTA
ATTTCTATTTTTTGAAGAAGTTTG
Found at i:8423640 original size:468 final size:468
Alignment explanation
Indices: 8422859--8423747 Score: 1494
Period size: 468 Copynumber: 1.9 Consensus size: 468
8422849 AACTTTTTGC
8422859 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
1 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
* * *
8422924 GACTTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGTTATATGAACTTATCACTTCAAGT
66 GAATTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGCTATACGAACTTATCACTTCAAGT
* * ** *
8422989 GTGGCATTTGTTTTACCTTTGGTTCCTATCTCGTTAGATAGTGGGTCAAGGTTTATTTGTTGTCT
131 GTGGCATTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAAGGTTTATTTGTTGTCT
* *
8423054 TCTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCTACATTGTTGGT
196 TCTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCCACACTGTTGGT
* *
8423119 TCATCCTTTGCTTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGAG
261 TCAGCCTTTGCCTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGAG
8423184 CCTATCTTCTA-CTCGTTTTCAGCCTTTCTTGAAACGAAGCACAACTTACTCAATTTCTCAATCG
326 CCTATCTTCTACCT-GTTTTCAGCCTTTCTTGAAACGAAGCACAACTTACTCAATTTCTCAATCG
*
8423248 GGCACACACATACGACTCAAAACTACATCAACCGAGTTCGTATCAAGTGTTATGTTTCAAATACT
390 GGCAAACACATACGACTCAAAACTACATCAACCGAGTTCGTATCAAGTGTTATGTTTCAAATACT
8423313 CATATTTTTTTCTT
455 CATATTTTTTTCTT
8423327 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
1 CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
* * *
8423392 GAATTATCAAGTTAGGCTTGTGGCGTCATTTCCTTCCTTTGCTATCCGAACTTATCACTTCAAGT
66 GAATTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGCTATACGAACTTATCACTTCAAGT
* *
8423457 GTGGCGTTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAATGTTTATTTGTTGT-T
131 GTGGCATTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAAGGTTTATTTGTTGTCT
* * *
8423521 TCCTAAATTAAATTATCCAACTAAGTGCTTTTAAGACTTGGGTCAACAATCATCCATACTGTTGG
196 T-CTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCCACACTGTTGG
* *
8423586 TTCAGCCTTTGCCTTAGCCAAACCTATCTATCCATTTCTTAAACATTCTTTGAACCTCTGTTTGA
260 TTCAGCCTTTGCCTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGA
** * *
8423651 GCCTATCTTCTACCTGTTTTCAGCCTTTCTTGAAACGACTCACAACTTACTCAATTTCTCGATTG
325 GCCTATCTTCTACCTGTTTTCAGCCTTTCTTGAAACGAAGCACAACTTACTCAATTTCTCAATCG
*
8423716 GGCAAACACATACGACTCGAAACTACATCAAC
390 GGCAAACACATACGACTCAAAACTACATCAAC
8423748 TGATTTCATA
Statistics
Matches: 391, Mismatches: 28, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
467 2 0.01
468 387 0.99
469 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (468 bp):
CAATTTTATCAAGCAATTGAAACTTGTGAGAATTCAAATCTCCTTGTTCTCTTTGGGACTGATCT
GAATTATCAAGATAGACTTGTGGCGTCATTTCCTTCCTTTGCTATACGAACTTATCACTTCAAGT
GTGGCATTCGTTTTACCTTCGGTTCCTATCTCGTTAGATAGCCGATCAAGGTTTATTTGTTGTCT
TCTAAATCAAATTATCCAACTAAGTGCTTTTAAGACTTAGGTCAACAATCATCCACACTGTTGGT
TCAGCCTTTGCCTTAGCCAAACCTATCCATCCATTTCCTAAACATTCTTTGAACCTCTGTTTGAG
CCTATCTTCTACCTGTTTTCAGCCTTTCTTGAAACGAAGCACAACTTACTCAATTTCTCAATCGG
GCAAACACATACGACTCAAAACTACATCAACCGAGTTCGTATCAAGTGTTATGTTTCAAATACTC
ATATTTTTTTCTT
Found at i:8423859 original size:23 final size:24
Alignment explanation
Indices: 8423829--8423875 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
8423819 GTGATTTTAT
*
8423829 AAAAAAAAGATTCG-AAAAAAATA
1 AAAAAAAAAATTCGCAAAAAAATA
8423852 AAAAAAAAAATTCGTCAAAAAAAT
1 AAAAAAAAAATTCG-CAAAAAAAT
8423876 TTCAACATCA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 13 0.62
25 8 0.38
ACGTcount: A:0.72, C:0.06, G:0.06, T:0.15
Consensus pattern (24 bp):
AAAAAAAAAATTCGCAAAAAAATA
Found at i:8435782 original size:38 final size:38
Alignment explanation
Indices: 8435740--8435817 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
8435730 CTAATTTCAC
8435740 ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
1 ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
*
8435778 ATCAACAACTATTAAATCATGATATTCCTTTAATGACA
1 ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
8435816 AT
1 AT
8435818 GTTAAAAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.33
Consensus pattern (38 bp):
ATCAACAACTATTAAATCATGATATTCCTTCAATGACA
Found at i:8436442 original size:18 final size:18
Alignment explanation
Indices: 8436410--8436459 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
8436400 AGATTAGAGT
**
8436410 TTGATATTTTGATTTAAA
1 TTGATATTTAAATTTAAA
*
8436428 TTGATATTTAAATTTAAT
1 TTGATATTTAAATTTAAA
**
8436446 TTTTTATTTAAATT
1 TTGATATTTAAATT
8436460 AGTATTTATA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (18 bp):
TTGATATTTAAATTTAAA
Found at i:8437863 original size:20 final size:19
Alignment explanation
Indices: 8437840--8437910 Score: 61
Period size: 21 Copynumber: 3.4 Consensus size: 19
8437830 TTTTATTAAT
8437840 TTAATATTAAAGTGATTATA
1 TTAATATTAAAGT-ATTATA
*
8437860 TTAATATTAAATTTAATCTAATA
1 TTAATATTAAA-GT-AT-T-ATA
*
8437883 TTTATATTGATAAGTATTATA
1 TTAATATT-A-AAGTATTATA
8437904 TTAATAT
1 TTAATAT
8437911 AATATTAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
20 11 0.27
21 12 0.29
22 2 0.05
23 12 0.29
24 2 0.05
25 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.06, T:0.49
Consensus pattern (19 bp):
TTAATATTAAAGTATTATA
Found at i:8438710 original size:20 final size:20
Alignment explanation
Indices: 8438685--8438736 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
8438675 GGGCACACGA
* *
8438685 CCGTGTGGCCTGGGATATGC
1 CCGTGTGGCCTAGGACATGC
*
8438705 CCGTGTGGTCTAGGACATGC
1 CCGTGTGGCCTAGGACATGC
*
8438725 CCGTTTGGCCTA
1 CCGTGTGGCCTA
8438737 CTTGTGGGCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.12, C:0.27, G:0.35, T:0.27
Consensus pattern (20 bp):
CCGTGTGGCCTAGGACATGC
Found at i:8439554 original size:46 final size:50
Alignment explanation
Indices: 8439504--8439611 Score: 125
Period size: 53 Copynumber: 2.2 Consensus size: 50
8439494 TAGCCCTGCC
* *
8439504 ATGGTCTTACACG-GATCACA-TA-ACAT-ACCGATGCCATATCCCAAAT
1 ATGGTCTTACACGAAATCACATTACACATCACCGATGCCATAGCCCAAAT
* *
8439550 ATGGTCTTATACGAAATCACATTATCACATCACACCGATGCCATAGCCCAACT
1 ATGGTCTTACACGAAATCACATTA-CACAT--CACCGATGCCATAGCCCAAAT
8439603 ATGGTCTTA
1 ATGGTCTTA
8439612 TATGGAAGTA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
46 12 0.24
47 6 0.12
48 2 0.04
50 4 0.08
53 27 0.53
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACACGAAATCACATTACACATCACCGATGCCATAGCCCAAAT
Found at i:8441528 original size:49 final size:49
Alignment explanation
Indices: 8441412--8441552 Score: 115
Period size: 49 Copynumber: 2.9 Consensus size: 49
8441402 CATGAAACTG
* * * *
8441412 GAACTCGAGACCGTATAACCACCGTCAATTGGGGGCCTAAGTTATATTT
1 GAACTCGTGACCGTATAACCACCGTCAACTGGGAGCCCAAGTTATATTT
*** ** *
8441461 GAAC-CTGTGACTACATAACCATTGTTAACTGGGAGCCCAAGTTATACTTT
1 GAACTC-GTGACCGTATAACCACCGTCAACTGGGAGCCCAAGTTATA-TTT
* * * * *
8441511 -AACTCGTGACCGTATAACTACCGTGAAATGAGATCCCAAGTT
1 GAACTCGTGACCGTATAACCACCGTCAACTGGGAGCCCAAGTT
8441553 GCAATGTGAC
Statistics
Matches: 69, Mismatches: 20, Indels: 6
0.73 0.21 0.06
Matches are distributed among these distances:
48 1 0.01
49 64 0.93
50 4 0.06
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (49 bp):
GAACTCGTGACCGTATAACCACCGTCAACTGGGAGCCCAAGTTATATTT
Found at i:8443999 original size:23 final size:22
Alignment explanation
Indices: 8443964--8444009 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
8443954 CCGAACGTGG
* *
8443964 TTCGGGAAGTGGACATCTCGATT
1 TTCGCGAAATGGACAT-TCGATT
*
8443987 TTCGCGAAATGGAGATTCGATT
1 TTCGCGAAATGGACATTCGATT
8444009 T
1 T
8444010 CTTCGAACTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (22 bp):
TTCGCGAAATGGACATTCGATT
Found at i:8446395 original size:25 final size:25
Alignment explanation
Indices: 8446360--8446409 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
8446350 AAATATAATT
8446360 AAATAAGTAATATAATTTTCTTCTC
1 AAATAAGTAATATAATTTTCTTCTC
*
8446385 AAATAATTAATATAATTTTCTTCTC
1 AAATAAGTAATATAATTTTCTTCTC
8446410 TTGAATTTAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.12, G:0.02, T:0.46
Consensus pattern (25 bp):
AAATAAGTAATATAATTTTCTTCTC
Found at i:8446750 original size:29 final size:30
Alignment explanation
Indices: 8446718--8446781 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
8446708 TGTTTATCGG
*
8446718 TAAAATTTTACTTTAA-TTTTTAAAAATAA
1 TAAAATTTTAATTTAATTTTTTAAAAATAA
*
8446747 TAAAATTTTAATTTAATTTTTTAAAAATTA
1 TAAAATTTTAATTTAATTTTTTAAAAATAA
8446777 TAAAA
1 TAAAA
8446782 GTATAAATTA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 15 0.47
30 17 0.53
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (30 bp):
TAAAATTTTAATTTAATTTTTTAAAAATAA
Found at i:8446791 original size:15 final size:17
Alignment explanation
Indices: 8446770--8446810 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
8446760 TAATTTTTTA
*
8446770 AAAATTATAAAAGT-AT
1 AAAATTATAAAAATAAT
8446786 -AAATTATAAAAATAAT
1 AAAATTATAAAAATAAT
8446802 AAAATTATA
1 AAAATTATA
8446811 TTTTTACTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
15 12 0.55
16 2 0.09
17 8 0.36
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (17 bp):
AAAATTATAAAAATAAT
Found at i:8454366 original size:15 final size:15
Alignment explanation
Indices: 8454346--8454386 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
8454336 AATTGGACAG
8454346 TGGATACATCACTAA
1 TGGATACATCACTAA
*
8454361 TGGATACATCACTAG
1 TGGATACATCACTAA
8454376 TGGATACATCA
1 TGGATACATCA
8454387 TTGTTTAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.27
Consensus pattern (15 bp):
TGGATACATCACTAA
Found at i:8459593 original size:357 final size:358
Alignment explanation
Indices: 8458931--8460337 Score: 2442
Period size: 357 Copynumber: 3.9 Consensus size: 358
8458921 AAGAAATGAT
8458931 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
8458996 CATAAGAACAACAATCGGGGACCCATGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGC
66 CATAAGAACAACAATCGGGGACCCATGA-CCAT------GAGTGCAGTTTGAAAGACAGTCTAGC
*
8459061 AAATCAGGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATC
124 AAATCAGGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATC
* * *
8459126 TATGTCCCTTTCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAA
189 TATGTCCCTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAA
*
8459191 TAACCAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
254 TAACCAACAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
8459256 CAGGGAACTAAAAGC-AATGCCAAACCATGTTTAATTGCA
319 CAGGGAACTAAAAGCAAATGCCAAACCATGTTTAATTGCA
*
8459295 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTTACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* *
8459360 CATAAGAGCAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAG
66 CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
* *
8459425 GTAACGATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGGTCTATGTCC
131 GTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
8459490 CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
196 CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
* *
8459555 CAATGGTTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAA
261 CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
* *
8459620 CTAAAAGCAAATACCAAACCATGTTCAATTGCA
326 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
*
8459653 ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* *
8459718 CATAAGGACAACAATCGGGGACCCATGACCA-GAGTGCAGTTTGAAAGATAGTCTAGCAAATCAG
66 CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
*
8459782 ATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
131 GTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
* * * *
8459847 CGATCAAGAGCGATTCAAATGACAACATTCAAATATCAACCAACTAGTAATCACGAAATAACCAA
196 CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
8459912 CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
261 CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
8459977 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
326 CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
* *
8460010 ATAACATACAACTTTTACCTTATGAAGTCAAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* ** *
8460075 CAGAAGAACAACAATCGGGGACCCATGACTGTGGGTGCAGTTTG-AAGACAGTCTAGCAAATCAG
66 CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
8460139 GTAACTATGTTACAAATTATATCAACAGCATAACAAATTTTCTTGATGACTAATTGATCTATGTC
131 GTAACTATGTTACAAATTATATCAACAGCATAAC-AATTTTCTTGATGACTAATTGATCTATGTC
*
8460204 CCTACCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCA
195 CCTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCA
* *
8460269 ACAATGGTTTCGGAACATTATTTCCAGTGGCAAATGTGATTTTGATTGTAAGCTCTGAACAGGGA
260 ACAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGA
8460334 ACTA
325 ACTA
8460338 TTGTGATTGT
Statistics
Matches: 992, Mismatches: 48, Indels: 12
0.94 0.05 0.01
Matches are distributed among these distances:
357 615 0.62
358 282 0.28
363 4 0.00
364 91 0.09
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (358 bp):
ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
CATAAGAACAACAATCGGGGACCCATGACCATGAGTGCAGTTTGAAAGACAGTCTAGCAAATCAG
GTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGTCC
CTATCAAGAGAGATTCAAAAGACAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAA
CAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGGAA
CTAAAAGCAAATGCCAAACCATGTTTAATTGCA
Found at i:8460336 original size:715 final size:717
Alignment explanation
Indices: 8458931--8460337 Score: 2498
Period size: 715 Copynumber: 2.0 Consensus size: 717
8458921 AAGAAATGAT
*
8458931 ATAACATACAACTTTTACCTTATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
8458996 CATAAGAACAACAATCGGGGACCCATGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGC
66 CATAAGAACAACAATCGGGG---C--GACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGC
* *
8459061 AAATCAGGTAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTGATTGATC
126 AAATCAGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATC
**
8459126 TATGTCCCTTTCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAA
191 TATGTCCCGATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAA
8459191 TAACCAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
256 TAACCAACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAA
*
8459256 CAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAG
321 CAGGGAACTAAAAGCAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAA
* * * *
8459321 GTCGAAACGGCAGTTCATCTCAGTTTACATTCCGCATCACATAAGAGCAACAATCGGGGACCCAT
386 GTCAAAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCAT
8459386 GACCATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAAC
451 GACCATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAAC
* *
8459451 AGCATAACAATTTTCTTGATGACTAATTGGTCTATGTCCCTATCAAGAGAGATTCAAAAGACAAC
516 AGCATAACAATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAAC
8459516 ATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAG
581 ATTCAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAG
8459581 TGGCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTAAAAGCAAATACCAAACCATGTTC
646 TGGCAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTAAAAGCAAATACCAAACCATGTTC
8459646 AATTGCA
711 AATTGCA
8459653 ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
1 ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
* *
8459718 CATAAGGACAACAATC-GGG-GACCCATGACCA-GAGTGCAGTTTGAAAGATAGTCTAGCAAATC
66 CATAAGAACAACAATCGGGGCGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGCAAATC
8459780 AGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGT
131 AGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGT
* * *
8459845 CCCGATCAAGAGCGATTCAAATGACAACATTCAAATATCAACCAACTAGTAATCACGAAATAACC
196 CCCGATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACC
*
8459910 AACAATGATTTCGGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGG
261 AACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGG
8459975 AACTAAAAGCAAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAAGTCA
326 AACTAAAAGC-AATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAAGTCA
*
8460040 AAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCATGACT
390 AAACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCATGACC
* * * *
8460105 GTGGGTGCAGTTTG-AAGACAGTCTAGCAAATCAGGTAACTATGTTACAAATTATATCAACAGCA
455 ATGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAACAGCA
8460169 TAACAAATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAACATT
520 TAAC-AATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAACATT
8460234 CAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTGG
584 CAAATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTGG
* *
8460299 CAAATGTGATTTTGATTGTAAGCTCTGAACAGGGAACTA
649 CAAATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTA
8460338 TTGTGATTGT
Statistics
Matches: 658, Mismatches: 25, Indels: 11
0.95 0.04 0.02
Matches are distributed among these distances:
714 279 0.42
715 297 0.45
721 3 0.00
722 79 0.12
ACGTcount: A:0.37, C:0.20, G:0.16, T:0.26
Consensus pattern (717 bp):
ATAACATACAACTTTTACCTCATGAGGTCGAAACGGCAGTTCATCTCAGTTCACATTCCGCATCA
CATAAGAACAACAATCGGGGCGACCCATGACCACGAGTGCAGTTTGAAAGACAGTCTAGCAAATC
AGATAACTATGTTACAAATTATATCAACAGCATAACAATTTTCTTGATGACTAATTGATCTATGT
CCCGATCAAGAGAGATTCAAATGAAAACATTCAAATATCAACCAACTAGTAATCAAGAAATAACC
AACAATGATTTCAGAACATTATTTCCAGTGGCAAATGTGATTGTGATTGTAAGCTCTGAACAGGG
AACTAAAAGCAATGCCAAACCATGTTTAATTGCAATAACATACAACTTTTACCTTATGAAGTCAA
AACGGCAGTTCATCTCAGTTCACATTCCGCATCACAGAAGAACAACAATCGGGGACCCATGACCA
TGAGTGCAGTTTGAAAGACAGGCTAGCAAATCAGGTAACGATGTTACAAATTATATCAACAGCAT
AACAATTTTCTTGATGACTAATTGATCTATGTCCCTACCAAGAGAGATTCAAAAGACAACATTCA
AATATCAACCAACTAGTAATCAAGAAATAACCAACAATGGTTTCGGAACATTATTTCCAGTGGCA
AATGTGATTGTGATTGCAAGCTCTGAACAGGGAACTAAAAGCAAATACCAAACCATGTTCAATTG
CA
Found at i:8469312 original size:56 final size:56
Alignment explanation
Indices: 8469212--8469323 Score: 136
Period size: 56 Copynumber: 2.0 Consensus size: 56
8469202 CCCATATGAA
* * * * *
8469212 TATACTGACTTGGGACACACGGCCAAACCACACGCTTGTGTGCTAAGCTGTGTGAG
1 TATACTGACTTAGGACACACCGCCAAACCACACGCTCGTATGCTAAGCCGTGTGAG
* * *
8469268 TATACTGACTTAGGTCACACCGCCAAACCATACG-TCCGTATGCTAGGCCGTGTGAG
1 TATACTGACTTAGGACACACCGCCAAACCACACGCT-CGTATGCTAAGCCGTGTGAG
8469324 CAATTTGAGC
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
55 1 0.02
56 46 0.98
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (56 bp):
TATACTGACTTAGGACACACCGCCAAACCACACGCTCGTATGCTAAGCCGTGTGAG
Found at i:8472304 original size:3 final size:3
Alignment explanation
Indices: 8472283--8472341 Score: 95
Period size: 3 Copynumber: 20.0 Consensus size: 3
8472273 TTATCTCAAT
8472283 TAA TAGA TAA -AA T-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8472327 TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA
8472342 GTAAATATCT
Statistics
Matches: 53, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
2 4 0.08
3 46 0.87
4 3 0.06
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:8475107 original size:47 final size:46
Alignment explanation
Indices: 8474993--8475159 Score: 244
Period size: 46 Copynumber: 3.6 Consensus size: 46
8474983 TCTAATATGG
* * * *
8474993 AATGTGTAAGACCATGGTTGAAAGATACCATGGCAACCTGACATGA
1 AATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACATAA
8475039 AATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACATAAA
1 AATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACAT-AA
* * *
8475086 AATGAATAAGACCATGGTTGAAAGATACCATGGCAACATGACAGAA
1 AATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACATAA
* *
8475132 AACGAGTAAAACCATAGTTGAAAGATAC
1 AATGAGTAAGACCATAGTTGAAAGATAC
8475160 TATGACATCA
Statistics
Matches: 109, Mismatches: 11, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 67 0.61
47 42 0.39
ACGTcount: A:0.44, C:0.16, G:0.21, T:0.19
Consensus pattern (46 bp):
AATGAGTAAGACCATAGTTGAAAGATACCATGGCAACATGACATAA
Found at i:8476551 original size:25 final size:25
Alignment explanation
Indices: 8476506--8476570 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
8476496 TGAGCATGTA
* *
8476506 AACGAGAAGCTCTTCCAAGCTATAT
1 AACGAGAAGCTCATGCAAGCTATAT
* *
8476531 AACGAGAAGCTCATGCGAGCTGTAT
1 AACGAGAAGCTCATGCAAGCTATAT
* *
8476556 ATCGGGAAGCTCATG
1 AACGAGAAGCTCATG
8476571 AGAGTTGTGG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.22
Consensus pattern (25 bp):
AACGAGAAGCTCATGCAAGCTATAT
Found at i:8480521 original size:13 final size:13
Alignment explanation
Indices: 8480503--8480527 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8480493 GAAAACGTAA
8480503 AAAAAAGAAAAAG
1 AAAAAAGAAAAAG
8480516 AAAAAAGAAAAA
1 AAAAAAGAAAAA
8480528 AAACCCATAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:8481897 original size:15 final size:15
Alignment explanation
Indices: 8481877--8481917 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
8481867 TAAGAGAGTG
8481877 TAATTACTACTTTAA
1 TAATTACTACTTTAA
* *
8481892 TAATTATTACTCTAA
1 TAATTACTACTTTAA
8481907 TAATTAC-ACTT
1 TAATTACTACTT
8481918 CTATTCAATT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 3 0.14
15 19 0.86
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (15 bp):
TAATTACTACTTTAA
Found at i:8490390 original size:31 final size:32
Alignment explanation
Indices: 8490336--8490398 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 32
8490326 TTAATTTTTT
*
8490336 ATAATATCTACTTTACCCCTATTAACT-TTAA
1 ATAATACCTACTTTACCCCTATTAACTCTTAA
***
8490367 ATAATACCTACTTTACGTTTATTAACTCTTAA
1 ATAATACCTACTTTACCCCTATTAACTCTTAA
8490399 TAACTCCTTC
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
31 23 0.85
32 4 0.15
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.43
Consensus pattern (32 bp):
ATAATACCTACTTTACCCCTATTAACTCTTAA
Found at i:8490401 original size:31 final size:31
Alignment explanation
Indices: 8490321--8490382 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
8490311 ATAAAATTGT
* ** *
8490321 CCCTATTAATTTTTTATAATATCTACTTTAC
1 CCCTATTAACTTTAAATAATACCTACTTTAC
8490352 CCCTATTAACTTTAAATAATACCTACTTTAC
1 CCCTATTAACTTTAAATAATACCTACTTTAC
8490383 GTTTATTAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.32, C:0.23, G:0.00, T:0.45
Consensus pattern (31 bp):
CCCTATTAACTTTAAATAATACCTACTTTAC
Found at i:8491804 original size:17 final size:19
Alignment explanation
Indices: 8491781--8491818 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
8491771 CATGTGTGCA
8491781 AATAATATACATATGTATAT
1 AATAATA-ACATATGTATAT
*
8491801 AATAATAATATATGTATA
1 AATAATAACATATGTATA
8491819 CTTAAACTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.39
Consensus pattern (19 bp):
AATAATAACATATGTATAT
Found at i:8491836 original size:5 final size:5
Alignment explanation
Indices: 8491826--8491873 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
8491816 ATACTTAAAC
8491826 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
1 TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTATA TTA
8491874 GTATAATAAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TTATA
Found at i:8491966 original size:13 final size:13
Alignment explanation
Indices: 8491935--8491980 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 13
8491925 AAATTGAAAC
* *
8491935 GAAACAGAGGGAA
1 GAAAGAGAGAGAA
8491948 -AAAGAGAGAGAA
1 GAAAGAGAGAGAA
8491960 GAAAGAGAGA-AA
1 GAAAGAGAGAGAA
8491972 GAAAG-GAGA
1 GAAAGAGAGA
8491981 AGAGTTAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 4 0.13
12 17 0.57
13 9 0.30
ACGTcount: A:0.61, C:0.02, G:0.37, T:0.00
Consensus pattern (13 bp):
GAAAGAGAGAGAA
Found at i:8499221 original size:2 final size:2
Alignment explanation
Indices: 8499214--8499240 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8499204 TCTTTTATTT
8499214 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
8499241 TATTCCCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8500406 original size:22 final size:22
Alignment explanation
Indices: 8500381--8500423 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8500371 AATTTAGTTG
8500381 TAAAACAAAAAT-TATTATTTTA
1 TAAAA-AAAAATATATTATTTTA
*
8500403 TAAAATAAAATATATTATTTT
1 TAAAAAAAAATATATTATTTT
8500424 GAATGTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (22 bp):
TAAAAAAAAATATATTATTTTA
Found at i:8501990 original size:24 final size:27
Alignment explanation
Indices: 8501957--8502007 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 27
8501947 GTGAGGGGAA
8501957 ATTATATTATGGATT-TTTTT-ATTAT
1 ATTATATTATGGATTATTTTTAATTAT
8501982 ATTAT-TTATGGATTATTTTTAATTAT
1 ATTATATTATGGATTATTTTTAATTAT
8502008 TTAATGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 9 0.38
25 10 0.42
26 5 0.21
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (27 bp):
ATTATATTATGGATTATTTTTAATTAT
Found at i:8502008 original size:24 final size:25
Alignment explanation
Indices: 8501957--8502008 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
8501947 GTGAGGGGAA
*
8501957 ATTATATTATGGATTTTTTTATTAT
1 ATTATATTATGGATTTTTTTAATAT
8501982 ATTAT-TTATGGATTATTTTTAAT-T
1 ATTATATTATGGATT-TTTTTAATAT
8502006 ATT
1 ATT
8502009 TAATGATATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 13 0.52
25 12 0.48
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (25 bp):
ATTATATTATGGATTTTTTTAATAT
Found at i:8502146 original size:20 final size:20
Alignment explanation
Indices: 8502123--8502160 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8502113 TCCTAAATCA
*
8502123 TGAACTTGAACCCTAAACTT
1 TGAACCTGAACCCTAAACTT
*
8502143 TGAACCTGAACTCTAAAC
1 TGAACCTGAACCCTAAAC
8502161 CTTAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (20 bp):
TGAACCTGAACCCTAAACTT
Found at i:8502463 original size:18 final size:19
Alignment explanation
Indices: 8502435--8502474 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
8502425 TGTAATTTAA
**
8502435 ATTTGTAGTTTTTTTTCAT
1 ATTTGTAGTTTAATTTCAT
8502454 ATTT-TAGTTTAATTTCAT
1 ATTTGTAGTTTAATTTCAT
8502472 ATT
1 ATT
8502475 ACCATTGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.23, C:0.05, G:0.07, T:0.65
Consensus pattern (19 bp):
ATTTGTAGTTTAATTTCAT
Found at i:8502605 original size:3 final size:3
Alignment explanation
Indices: 8502597--8502657 Score: 122
Period size: 3 Copynumber: 20.3 Consensus size: 3
8502587 GATCATTGCC
8502597 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
8502645 TAA TAA TAA TAA T
1 TAA TAA TAA TAA T
8502658 TATTGTGTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:8503441 original size:3 final size:3
Alignment explanation
Indices: 8503433--8503480 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
8503423 CTCGAACTAA
8503433 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8503481 CTTGATGTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8504155 original size:9 final size:9
Alignment explanation
Indices: 8504141--8504174 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8504131 AAAATTGGGT
8504141 AATTAACCG
1 AATTAACCG
*
8504150 AATTAACTG
1 AATTAACCG
8504159 AATTAACCG
1 AATTAACCG
8504168 AACTTAA
1 AA-TTAA
8504175 TAAATAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 18 0.82
10 4 0.18
ACGTcount: A:0.47, C:0.18, G:0.09, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:8508547 original size:6 final size:6
Alignment explanation
Indices: 8508536--8508590 Score: 56
Period size: 6 Copynumber: 8.7 Consensus size: 6
8508526 AAGAAGACGG
* * *
8508536 TGAAGA TGAAGA TGAAGA TGAAGA CGAATACGA AGAAGA CGAAGA TGAAGA
1 TGAAGA TGAAGA TGAAGA TGAAGA TG-A-A-GA TGAAGA TGAAGA TGAAGA
8508587 TGAA
1 TGAA
8508591 AACGACGACG
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
6 35 0.83
7 2 0.05
8 2 0.05
9 3 0.07
ACGTcount: A:0.51, C:0.05, G:0.31, T:0.13
Consensus pattern (6 bp):
TGAAGA
Found at i:8508573 original size:27 final size:27
Alignment explanation
Indices: 8508543--8508595 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8508533 CGGTGAAGAT
* *
8508543 GAAGATGAAGATGAAGACGAATACGAA
1 GAAGACGAAGATGAAGACGAAAACGAA
*
8508570 GAAGACGAAGATGAAGATGAAAACGA
1 GAAGACGAAGATGAAGACGAAAACGA
8508596 CGACGTCCTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.53, C:0.08, G:0.30, T:0.09
Consensus pattern (27 bp):
GAAGACGAAGATGAAGACGAAAACGAA
Found at i:8508574 original size:45 final size:45
Alignment explanation
Indices: 8508489--8508590 Score: 107
Period size: 45 Copynumber: 2.3 Consensus size: 45
8508479 TGATCTCGAT
* * * * * * *
8508489 GGTGAAGATTACGATGACGATGAAGACGATGCTATTGAAGAAGAC
1 GGTGAAGATGAAGATGAAGATGAAGACGATACGATAGAAGAAGAA
*
8508534 GGTGAAGATGAAGATGAAGATGAAGACGAATACGA-AGAAGACGAA
1 GGTGAAGATGAAGATGAAGATGAAGACG-ATACGATAGAAGAAGAA
*
8508579 GATGAAGATGAA
1 GGTGAAGATGAA
8508591 AACGACGACG
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 43 0.91
46 4 0.09
ACGTcount: A:0.44, C:0.08, G:0.32, T:0.16
Consensus pattern (45 bp):
GGTGAAGATGAAGATGAAGATGAAGACGATACGATAGAAGAAGAA
Found at i:8510999 original size:28 final size:28
Alignment explanation
Indices: 8510959--8511014 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
8510949 AGCATTAATG
*
8510959 GTGCAATTGACTGCTAGATGGAAGTTTA
1 GTGCAATTGACTGCCAGATGGAAGTTTA
8510987 GTGCAATTGACTGCCAGATGGAAGTTTA
1 GTGCAATTGACTGCCAGATGGAAGTTTA
8511015 CGTATTGTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (28 bp):
GTGCAATTGACTGCCAGATGGAAGTTTA
Found at i:8515453 original size:6 final size:6
Alignment explanation
Indices: 8515433--8515506 Score: 94
Period size: 6 Copynumber: 12.2 Consensus size: 6
8515423 CTAAATCTTC
* *
8515433 TCCCCTT TCCTCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TTCCCT
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT
* * *
8515482 TTCCCT TTCCCT TTCCCT TCCCCT T
1 TCCCCT TCCCCT TCCCCT TCCCCT T
8515507 GGGTTGCAAA
Statistics
Matches: 63, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
6 59 0.94
7 4 0.06
ACGTcount: A:0.00, C:0.58, G:0.00, T:0.42
Consensus pattern (6 bp):
TCCCCT
Found at i:8516537 original size:84 final size:84
Alignment explanation
Indices: 8516396--8516567 Score: 272
Period size: 84 Copynumber: 2.0 Consensus size: 84
8516386 TTGTAGGCTA
*
8516396 TATTAATATAGATGTAATGTAATTTAGCTAATGACAAAGAAGATGGTTCAAATTTGAACTAGTTT
1 TATTAATATAGATGTAATGTAATTCAGCTAATGACAAAGAAGATGGTTCAAATTTGAACTAGTTT
*
8516461 TGCATATTCATTTTGATTT
66 TGCATATTCATTTTGATTC
* * * * *
8516480 TATTAATATAGATGTAATGTAATTCAGTTGATGCCAGAGAAGATGGTTCAAATTTGAACTGGTTT
1 TATTAATATAGATGTAATGTAATTCAGCTAATGACAAAGAAGATGGTTCAAATTTGAACTAGTTT
*
8516545 TGCATCTTCATTTTGATTC
66 TGCATATTCATTTTGATTC
8516564 TATT
1 TATT
8516568 GGCAATAATA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
84 80 1.00
ACGTcount: A:0.33, C:0.09, G:0.17, T:0.42
Consensus pattern (84 bp):
TATTAATATAGATGTAATGTAATTCAGCTAATGACAAAGAAGATGGTTCAAATTTGAACTAGTTT
TGCATATTCATTTTGATTC
Found at i:8517076 original size:17 final size:16
Alignment explanation
Indices: 8517054--8517087 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
8517044 TTTAAAATAG
8517054 TTTTTTTT-AAATAGTT
1 TTTTTTTTGAAATA-TT
8517070 TTTTTTTTGAAATATT
1 TTTTTTTTGAAATATT
8517086 TT
1 TT
8517088 CAAGAAAGTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.24, C:0.00, G:0.06, T:0.71
Consensus pattern (16 bp):
TTTTTTTTGAAATATT
Found at i:8517087 original size:14 final size:14
Alignment explanation
Indices: 8517048--8517075 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8517038 GTTTCATTTA
8517048 AAATAGTTTTTTTT
1 AAATAGTTTTTTTT
8517062 AAATAGTTTTTTTT
1 AAATAGTTTTTTTT
8517076 TTGAAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.64
Consensus pattern (14 bp):
AAATAGTTTTTTTT
Found at i:8517173 original size:107 final size:107
Alignment explanation
Indices: 8516987--8517181 Score: 320
Period size: 107 Copynumber: 1.8 Consensus size: 107
8516977 CACTTTGTTT
8516987 AGTGAACTTAGCTAAACAATTAAATGAAAAGAAAAACTCAAATATATGTTTGTTTCATTTAAAAT
1 AGTGAACTTAGCTAAACAATTAAATGAAAAGAAAAACTCAAATATATGTTTGTTTCATTTAAAAT
*
8517052 AGTTTTTTTTAAATAGTTTTTTTTTTGAAATATTTTCAAGAA
66 AGTTTTTTTAAAATAGTTTTTTTTTTGAAATATTTTCAAGAA
* * * * *
8517094 AGTGAATTTAGCTAAACAATTAACA-GACAAGAAAAATTCAAATGTATGTTTGTTTCGTTTAAAA
1 AGTGAACTTAGCTAAACAATTAA-ATGAAAAGAAAAACTCAAATATATGTTTGTTTCATTTAAAA
8517158 TAGTTTTTTTAAAATAGTTTTTTT
65 TAGTTTTTTTAAAATAGTTTTTTT
8517182 GAAATATTTT
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
107 80 0.99
108 1 0.01
ACGTcount: A:0.40, C:0.07, G:0.11, T:0.42
Consensus pattern (107 bp):
AGTGAACTTAGCTAAACAATTAAATGAAAAGAAAAACTCAAATATATGTTTGTTTCATTTAAAAT
AGTTTTTTTAAAATAGTTTTTTTTTTGAAATATTTTCAAGAA
Found at i:8517180 original size:13 final size:14
Alignment explanation
Indices: 8517151--8517192 Score: 68
Period size: 14 Copynumber: 3.1 Consensus size: 14
8517141 GTTTGTTTCG
8517151 TTTAAAATAGTTTT
1 TTTAAAATAGTTTT
8517165 TTTAAAATAGTTTT
1 TTTAAAATAGTTTT
*
8517179 TTTGAAATA-TTTT
1 TTTAAAATAGTTTT
8517192 T
1 T
8517193 AGGAAATCTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
13 5 0.19
14 22 0.81
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (14 bp):
TTTAAAATAGTTTT
Found at i:8517397 original size:24 final size:24
Alignment explanation
Indices: 8517365--8517413 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
8517355 TCCAATACAT
8517365 TTTGGTTGACTGATGTCCCTGAGG
1 TTTGGTTGACTGATGTCCCTGAGG
8517389 TTTGGTTGACTGATGTCCCTGAGG
1 TTTGGTTGACTGATGTCCCTGAGG
8517413 T
1 T
8517414 CTATTTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.16, G:0.33, T:0.39
Consensus pattern (24 bp):
TTTGGTTGACTGATGTCCCTGAGG
Found at i:8518747 original size:15 final size:13
Alignment explanation
Indices: 8518692--8518734 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
8518682 CTAATATGTG
* *
8518692 AAAAATAAATTTA
1 AAAAATATATATA
8518705 AAATAATATATATA
1 AAA-AATATATATA
8518719 AAAAATATATATA
1 AAAAATATATATA
8518732 AAA
1 AAA
8518735 CAATTTAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
13 16 0.59
14 11 0.41
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
AAAAATATATATA
Found at i:8518755 original size:24 final size:23
Alignment explanation
Indices: 8518727--8518825 Score: 67
Period size: 24 Copynumber: 4.1 Consensus size: 23
8518717 TAAAAAATAT
8518727 ATATAAAACAATTTAATATAAGTA
1 ATATAAAACAATTTAA-ATAAGTA
** *
8518751 ATATATGA-AATCTTAAAGTAAATA
1 ATATAAAACAAT-TTAAA-TAAGTA
* *
8518775 ATAATAGAACGATTTAAAATAAGTA
1 AT-ATAAAACAATTT-AAATAAGTA
* *
8518800 ATATAAAA-AACTTAGAATAAATA
1 ATATAAAACAATTTA-AATAAGTA
8518823 ATA
1 ATA
8518826 GTTACAAACA
Statistics
Matches: 58, Mismatches: 11, Indels: 13
0.71 0.13 0.16
Matches are distributed among these distances:
22 1 0.02
23 17 0.29
24 22 0.38
25 13 0.22
26 5 0.09
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (23 bp):
ATATAAAACAATTTAAATAAGTA
Found at i:8521378 original size:18 final size:20
Alignment explanation
Indices: 8521336--8521372 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8521326 ACATTTTATG
*
8521336 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
8521355 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
8521373 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:8528474 original size:18 final size:20
Alignment explanation
Indices: 8528432--8528468 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8528422 ATATTTTATG
*
8528432 ATTA-TTTAATTAGATATAT
1 ATTATTTTAATGAGATATAT
8528451 ATTATTTTAATGAGATAT
1 ATTATTTTAATGAGATAT
8528469 TTTATTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (20 bp):
ATTATTTTAATGAGATATAT
Found at i:8530429 original size:46 final size:46
Alignment explanation
Indices: 8530358--8530493 Score: 168
Period size: 46 Copynumber: 3.0 Consensus size: 46
8530348 GCTCTCTTAT
* * * *
8530358 ATGAAATGTATAAGACCATGGTTGAAAGATACCATGGCAGCGTGAC
1 ATGAAATGAATAAGACCATGATTGAAAGATACCATGGCAACATGAC
8530404 ATGAAATGAATAAGACCATGATTGAAAGATACCATGGCAACATGAC
1 ATGAAATGAATAAGACCATGATTGAAAGATACCATGGCAACATGAC
* * * *
8530450 A-GAAAATGAGTAAGACCAT-AGTTGAAAGACACTATGGCATCATG
1 ATG-AAATGAATAAGACCATGA-TTGAAAGATACCATGGCAACATG
8530494 TCAAAGATAA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
45 2 0.03
46 78 0.98
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.21
Consensus pattern (46 bp):
ATGAAATGAATAAGACCATGATTGAAAGATACCATGGCAACATGAC
Found at i:8540696 original size:21 final size:21
Alignment explanation
Indices: 8540632--8540696 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
8540622 AGTTAACTTG
*
8540632 TATGAGTTTCAGTTTAACCC-
1 TATGAGTTTCCGTTTAACCCT
* * * *
8540652 TATTGGGTTTCCGTTCAGCTCT
1 TA-TGAGTTTCCGTTTAACCCT
*
8540674 TATGAGCTTCCGTTTAACCCT
1 TATGAGTTTCCGTTTAACCCT
8540695 TA
1 TA
8540697 CGGGTTTCTA
Statistics
Matches: 33, Mismatches: 10, Indels: 3
0.72 0.22 0.07
Matches are distributed among these distances:
20 2 0.06
21 29 0.88
22 2 0.06
ACGTcount: A:0.18, C:0.23, G:0.17, T:0.42
Consensus pattern (21 bp):
TATGAGTTTCCGTTTAACCCT
Found at i:8540718 original size:42 final size:42
Alignment explanation
Indices: 8540632--8540719 Score: 97
Period size: 42 Copynumber: 2.1 Consensus size: 42
8540622 AGTTAACTTG
* * * *
8540632 TATGAGTTTCAGTTTAACCCTATTGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCAGTTTAACCCTATCGGGTTTCCATTCAGCACT
* * *
8540674 TATGAGCTTCCGTTTAACCCT-TACGGGTTTCTATTTAGCACT
1 TATGAGCTTCAGTTTAACCCTAT-CGGGTTTCCATTCAGCACT
8540716 TATG
1 TATG
8540720 TCTTTAGTGC
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 1 0.03
42 37 0.97
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (42 bp):
TATGAGCTTCAGTTTAACCCTATCGGGTTTCCATTCAGCACT
Found at i:8546730 original size:16 final size:16
Alignment explanation
Indices: 8546697--8546743 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
8546687 GTTCAATATA
*
8546697 TATATATTTCA-AAATT
1 TATATATTT-AGAATTT
8546713 TATATATTTAGAATTT
1 TATATATTTAGAATTT
*
8546729 TATAATTTTTAGAAT
1 TAT-ATATTTAGAAT
8546744 ACCATATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
15 1 0.04
16 16 0.59
17 10 0.37
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (16 bp):
TATATATTTAGAATTT
Found at i:8547923 original size:3 final size:3
Alignment explanation
Indices: 8547915--8548043 Score: 102
Period size: 3 Copynumber: 42.3 Consensus size: 3
8547905 ATATACTATA
* * * *
8547915 AAT AAT AAT AAT AGAA AAT AAT AAT AGT ACT AAT AGT AAT AAT AAT
1 AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * *
8547961 GAT GAT AAT AAT ATAT AAT ATAT AAA AAA AAT AA- AA- AAT AAT GAT
1 AAT AAT AAT AAT A-AT AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT
*
8548006 ATT AAT ACAT AA- ATAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT A-AT AAT A-AT AAT AAT AAT AAT AAT AAT AAT A
8548044 GTAGTAAAAG
Statistics
Matches: 104, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
2 5 0.05
3 87 0.84
4 12 0.12
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:8548249 original size:15 final size:15
Alignment explanation
Indices: 8548189--8548234 Score: 74
Period size: 15 Copynumber: 2.9 Consensus size: 15
8548179 ATATAAATAG
8548189 AAATAGAAATATAAT
1 AAATAGAAATATAAT
8548204 AAATAGAAATATAAT
1 AAATAGAAATATAAT
8548219 AATAGTAGAAATATAA
1 AA-A-TAGAAATATAA
8548235 ATAGATAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
15 17 0.59
16 1 0.03
17 11 0.38
ACGTcount: A:0.65, C:0.00, G:0.09, T:0.26
Consensus pattern (15 bp):
AAATAGAAATATAAT
Found at i:8552576 original size:27 final size:26
Alignment explanation
Indices: 8552542--8552627 Score: 63
Period size: 26 Copynumber: 3.3 Consensus size: 26
8552532 TGTTATATGA
8552542 CATTAGCAAGTGGACCTTATGAAATC
1 CATTAGCAAGTGGACCTTATGAAATC
* * * * *
8552568 CATTCAGC-ATTAGA-ATGT-T-ATATGA
1 CATT-AGCAAGTGGACCT-TATGAAAT-C
8552593 CATTAGCAAGTGGACCTTATGAAATC
1 CATTAGCAAGTGGACCTTATGAAATC
8552619 CATTCAGCA
1 CATT-AGCA
8552628 TGATTGGTGG
Statistics
Matches: 42, Mismatches: 10, Indels: 15
0.63 0.15 0.22
Matches are distributed among these distances:
24 6 0.14
25 11 0.26
26 15 0.36
27 10 0.24
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (26 bp):
CATTAGCAAGTGGACCTTATGAAATC
Found at i:8552602 original size:51 final size:51
Alignment explanation
Indices: 8552526--8552628 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
8552516 TGTGATAAAC
8552526 TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
1 TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
8552577 TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
1 TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
8552628 T
1 T
8552629 GATTGGTGGT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (51 bp):
TTAGAATGTTATATGACATTAGCAAGTGGACCTTATGAAATCCATTCAGCA
Done.