Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 3 of 186
Found at i:840850 original size:48 final size:48
Alignment explanation
Indices: 840795--840895 Score: 166
Period size: 48 Copynumber: 2.1 Consensus size: 48
840785 TGGGCTATCA
*
840795 GCATCGATATGTGATCCCATGTAAGACAATGTCTGGGACATGGCATTG
1 GCATCGATATGTGATCCCATGTAAGACAATATCTGGGACATGGCATTG
** *
840843 GCATCGATATGTGATCCCATGTAAGATGATATCTGGGATATGGCATTG
1 GCATCGATATGTGATCCCATGTAAGACAATATCTGGGACATGGCATTG
840891 GCATC
1 GCATC
840896 CTATCTTGTG
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (48 bp):
GCATCGATATGTGATCCCATGTAAGACAATATCTGGGACATGGCATTG
Found at i:846198 original size:14 final size:16
Alignment explanation
Indices: 846171--846203 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
846161 AAATTCACTT
846171 ATTCAATCTCACATTC
1 ATTCAATCTCACATTC
846187 ATTCAAT-T-ACATTC
1 ATTCAATCTCACATTC
846201 ATT
1 ATT
846204 ATCACATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 1 0.06
16 7 0.41
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTCAATCTCACATTC
Found at i:855323 original size:14 final size:16
Alignment explanation
Indices: 855296--855328 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
855286 AAATTCACTT
855296 ATTCAATCTCACATTC
1 ATTCAATCTCACATTC
855312 ATTCAAT-T-ACATTC
1 ATTCAATCTCACATTC
855326 ATT
1 ATT
855329 ATCACATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 9 0.53
15 1 0.06
16 7 0.41
ACGTcount: A:0.33, C:0.24, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTCAATCTCACATTC
Found at i:857615 original size:50 final size:50
Alignment explanation
Indices: 857535--857665 Score: 201
Period size: 50 Copynumber: 2.6 Consensus size: 50
857525 GGGGTAAGGA
*
857535 GCCGAAGCCATGTCCCAGACATGGTCTTACACAGGCTCTAGCATATCTAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCTAGCATATCTAT
* * *
857585 GCCGATGCCATGTCCCAGACATGGTTTTACATAGGCTCTAGCATATCTGT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCTAGCATATCTAT
* *
857635 GTCGATGCCATGTCCCA-AAATGGTCTTACAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACAC
857666 TGACACATAT
Statistics
Matches: 73, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
49 11 0.15
50 62 0.85
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (50 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACAGGCTCTAGCATATCTAT
Found at i:867683 original size:11 final size:11
Alignment explanation
Indices: 867610--867685 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
867600 ATTCCAAAAA
*
867610 TAATATTATTT
1 TAATATTAATT
867621 TAATAGTTTAATAT
1 TAATA--TTAAT-T
867635 TAA-ATTAAATT
1 TAATATT-AATT
*
867646 TAATACTTATTT
1 TAATA-TTAATT
*
867658 TAATAGT-ATT
1 TAATATTAATT
867668 T--TATTAATT
1 TAATATTAATT
867677 TAATATTAA
1 TAATATTAA
867686 AGTGATTAAG
Statistics
Matches: 51, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 18 0.35
12 12 0.24
13 7 0.14
14 4 0.08
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (11 bp):
TAATATTAATT
Found at i:871344 original size:28 final size:28
Alignment explanation
Indices: 871311--871403 Score: 118
Period size: 28 Copynumber: 3.3 Consensus size: 28
871301 ATTGCATGAC
871311 TATGAATATGATTGGGCCTGATGGGCCA
1 TATGAATATGATTGGGCCTGATGGGCCA
871339 TATGAATATGATTGGGACC-GATGGGCCA
1 TATGAATATGATTGGG-CCTGATGGGCCA
* *
871367 TATGAATGA-GATTGGGCCTAAAGGGGCCA
1 TATGAAT-ATGATTGGGCCT-GATGGGCCA
*
871396 AATGAATA
1 TATGAATA
871404 AGTGTGGATC
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
27 2 0.03
28 40 0.69
29 16 0.28
ACGTcount: A:0.31, C:0.13, G:0.31, T:0.25
Consensus pattern (28 bp):
TATGAATATGATTGGGCCTGATGGGCCA
Found at i:874848 original size:29 final size:30
Alignment explanation
Indices: 874789--874849 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
874779 ATGAATCGGA
*
874789 AGCTTTGGCACTAAGTGTACGATTTAAACT
1 AGCTTGGGCACTAAGTGTACGATTTAAACT
874819 AGCTTGGGCACTAAGTGTACGATTT-AACT
1 AGCTTGGGCACTAAGTGTACGATTTAAACT
874848 AG
1 AG
874850 TTTCGACTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.31
Consensus pattern (30 bp):
AGCTTGGGCACTAAGTGTACGATTTAAACT
Found at i:881257 original size:27 final size:27
Alignment explanation
Indices: 881227--881404 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
881217 ATATTGAGTC
* * * *
881227 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
881254 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
881281 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
881309 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
881336 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
881363 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
881390 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
881405 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:881366 original size:82 final size:81
Alignment explanation
Indices: 881248--881403 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
881238 TGCTATATAA
* *
881248 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
881313 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
881330 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
881394 CACTTAGTGC
65 CACTTAGTGC
881404 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:889320 original size:27 final size:27
Alignment explanation
Indices: 889290--889467 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
889280 ATATTGAGCC
* *
889290 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
889317 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
889344 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
889372 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
889399 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
889426 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
889453 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
889468 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:889429 original size:82 final size:81
Alignment explanation
Indices: 889311--889466 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
889301 TGCTATATAA
* *
889311 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
889376 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
889393 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
889457 CACTTAGTGC
65 CACTTAGTGC
889467 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:893362 original size:29 final size:30
Alignment explanation
Indices: 893303--893363 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
893293 ATGAATCGGA
*
893303 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTGGGCACTAAGTGTGCGATTTAAACT
893333 AGCTTGGGCACTAAGTGTGCGATTT-AACT
1 AGCTTGGGCACTAAGTGTGCGATTTAAACT
893362 AG
1 AG
893364 TTTCGGCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.31
Consensus pattern (30 bp):
AGCTTGGGCACTAAGTGTGCGATTTAAACT
Found at i:897785 original size:15 final size:17
Alignment explanation
Indices: 897755--897786 Score: 50
Period size: 15 Copynumber: 2.0 Consensus size: 17
897745 TTGATACTTG
897755 TGAATGTGAGTTTGGTA
1 TGAATGTGAGTTTGGTA
897772 TGAAT-TGA-TTTGGTA
1 TGAATGTGAGTTTGGTA
897787 AATTATGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 7 0.47
16 3 0.20
17 5 0.33
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (17 bp):
TGAATGTGAGTTTGGTA
Found at i:907349 original size:25 final size:24
Alignment explanation
Indices: 907321--907376 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 24
907311 ACATGAACAT
* **
907321 TATGTACTTACCTTTGCTTTTCTAG
1 TATGAACTTACCTTACCTTTT-TAG
*
907346 TATGAACTTATCTTACCTTTTTAG
1 TATGAACTTACCTTACCTTTTTAG
907370 TAT-AACT
1 TATGAACT
907377 CGTCTTACCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
23 4 0.15
24 6 0.22
25 17 0.63
ACGTcount: A:0.23, C:0.18, G:0.09, T:0.50
Consensus pattern (24 bp):
TATGAACTTACCTTACCTTTTTAG
Found at i:907382 original size:23 final size:25
Alignment explanation
Indices: 907337--907387 Score: 70
Period size: 23 Copynumber: 2.1 Consensus size: 25
907327 CTTACCTTTG
*
907337 CTTTTCTAGTATGAACTTATCTTAC
1 CTTTTCTAGTATGAACTCATCTTAC
*
907362 CTTTT-TAGTAT-AACTCGTCTTAC
1 CTTTTCTAGTATGAACTCATCTTAC
907385 CTT
1 CTT
907388 AACTTACCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 13 0.54
24 6 0.25
25 5 0.21
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.49
Consensus pattern (25 bp):
CTTTTCTAGTATGAACTCATCTTAC
Found at i:907590 original size:53 final size:54
Alignment explanation
Indices: 907500--907716 Score: 235
Period size: 55 Copynumber: 4.0 Consensus size: 54
907490 TACGTGGTAT
* * *
907500 CCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * * * *
907554 GCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CATTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-CTTG
* * * * *
907607 CCTTATGGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
*
907662 CCTTA-GAAACCTTACCAATTGCCATACCTT-AGCATGGTCTTACATGGTATCCTTG
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTG
907717 AACCCTAATG
Statistics
Matches: 133, Mismatches: 23, Indels: 13
0.79 0.14 0.08
Matches are distributed among these distances:
52 1 0.01
53 46 0.35
54 14 0.11
55 71 0.53
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.18, T:0.35
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:908641 original size:49 final size:49
Alignment explanation
Indices: 908588--908685 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
908578 ATAACTAAAT
908588 GACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCC
1 GACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCC
908637 GACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCC
1 GACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCC
908686 AGTTTTTGTC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.35, C:0.33, G:0.06, T:0.27
Consensus pattern (49 bp):
GACCAAAATGCCCTTACTACTAAACTTTCCAAAAATTCCATCCATGTCC
Found at i:914885 original size:16 final size:16
Alignment explanation
Indices: 914866--914896 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
914856 CTTCTTCACT
914866 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
914882 TACTTACTTACTTAA
1 TACTCACTTACTTAA
914897 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:914902 original size:20 final size:20
Alignment explanation
Indices: 914863--914902 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
914853 AAACTTCTTC
* *
914863 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
914883 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
914903 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:915222 original size:53 final size:54
Alignment explanation
Indices: 915132--915348 Score: 235
Period size: 55 Copynumber: 4.0 Consensus size: 54
915122 TACGTGGTAT
* * *
915132 CCTTTTGAAACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
* * * * *
915186 GCTTATG-AACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CATTTG
1 CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATC-CTTG
* * * * *
915239 CCTTATAGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTG
1 CCTTAT-GAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
*
915294 CCTTA-GAAACCTTACCAATTGCCATACCTT-AGCATGGTCTTACATGGTATCCTTG
1 CCTTATGAAA-CTTACCAA-TGCCATGCCTTGA-CATGGTCTTACATGGTATCCTTG
915349 AACCCTAATG
Statistics
Matches: 133, Mismatches: 23, Indels: 13
0.79 0.14 0.08
Matches are distributed among these distances:
52 1 0.01
53 46 0.35
54 14 0.11
55 71 0.53
56 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
CCTTATGAAACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTG
Found at i:916830 original size:452 final size:454
Alignment explanation
Indices: 915945--917187 Score: 2082
Period size: 452 Copynumber: 2.7 Consensus size: 454
915935 CCTCATATTC
* * ** * **
915945 TATCATAAAACACCAAAATACACAAATTTCACCTATGGGTATTTTT-CAATATATGAACCCTATG
1 TATCATAAAACATCAAAATAAACACTTTTCACCTATGGGTATTTTTCCAA-ATATGAACCTTAAC
* * * * * * * * *
916009 TTGAATTATTGCTAGAATAAACGTAATCAAGTTATCGGGACTCCAAAAACGTAAAGATCATTAAA
65 TTAAATTATTGCTAGCATAAGCTTTATCGAGCTACCGAGACTCCAAAAACGTAAAGATCATTAAA
*
916074 AGCGGGGCTTGGAATCACTTACTATGGAGTTTTAAAGCTTGAAACAAACCCTAGCTATGGAGAAC
130 AACGGGGCTTGGAATCACTTACTATGGAGTTTTAAAGCTTGAAACAAACCCTAGCTATGGAGAAC
916139 CCTTGAAATTTCGTCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTCA
195 CCTTGAAATTTCGTCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTCA
916204 TTTTAATAACTAAATAACCAAAATGCCCTTCCTTATTAAACTTTCAAAAATTCCATCCATGTCCT
260 TTTTAATAACTAAATAACCAAAATGCCCTTCCTTATTAAACTTTCAAAAATTCCATCCATGTCCT
*
916269 ATTTTGTCCATGAACTTAGAAATTGGTCAAATTTTTATTTAAACCCTCCTAATTAATATTCCAAA
325 ATTTTGTCCATGAACTTAGAAATTGGTCAAATTGTTATTTAAACCCTCCTAATTAATATTCCAAA
916334 GCAATTTCATACTAAAAACTTCTATAATGCAAGTTTTGCAAATTATTAGAGTTTGAATTTGATGT
390 GCAATTTCATACTAAAAACTTCTATAATGCAAGTTTTGCAAATTATTAGAGTTTGAATTTGATGT
916399 TATCATAAAACATCAAAATAAACACTTTTCACCTATGGGTATTTTTCCAAATATGAACCTTAACT
1 TATCATAAAACATCAAAATAAACACTTTTCACCTATGGGTATTTTTCCAAATATGAACCTTAACT
*
916464 TAAATTATTGCTAGCATAAGCTTTATCGAGCTACCGAGACTCCAAAAACGTAAAGAACATTAAAA
66 TAAATTATTGCTAGCATAAGCTTTATCGAGCTACCGAGACTCCAAAAACGTAAAGATCATTAAAA
* * * * * *
916529 ACGGGGCTTGGAATCACTTGCTTTGGAGCTTGAAAGCTTGAAACAAACCTTAGCTATGAAGAACC
131 ACGGGGCTTGGAATCACTTACTATGGAGTTTTAAAGCTTGAAACAAACCCTAGCTATGGAGAACC
* ** * * * * * *
916594 CTTGAAATTTCGTGCTAATGAAGAAGAT-GA-TGAATTTTG-TGTTATTTTTCCCTTTTTATTTC
196 CTTGAAATTTCGTCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTT--GTTTTTAATTC
* * *
916656 A-TTTAATATCCAAATGACCAAAATGCCCTTCCTTATTAAACTTTCAAAAATTCCATCCATGTCC
259 ATTTTAATAACTAAATAACCAAAATGCCCTTCCTTATTAAACTTTCAAAAATTCCATCCATGTCC
916720 TATTTTGTCCATGAACTTAGAAATTGGTCAAATTGTTATTTAAACCCTCCTAATTAATATTCCAA
324 TATTTTGTCCATGAACTTAGAAATTGGTCAAATTGTTATTTAAACCCTCCTAATTAATATTCCAA
916785 AGCAATTTCATACTAAAAACTTCTATAATGCAAGTTTTGCAAATTATTAGAGTTTGAATTTGATG
389 AGCAATTTCATACTAAAAACTTCTATAATGCAAGTTTTGCAAATTATTAGAGTTTGAATTTGATG
916850 T
454 T
916851 TATCATAAAACATCAAAATAAACACTTTTCACCTATGGGTATTTTTCCAAATATGAACCTTAACT
1 TATCATAAAACATCAAAATAAACACTTTTCACCTATGGGTATTTTTCCAAATATGAACCTTAACT
*
916916 TAAATTATTGCTAGCATAAGCTTTATCGAGCTACCGAGACTCTAAAAACGTAAAGATCATTAAAA
66 TAAATTATTGCTAGCATAAGCTTTATCGAGCTACCGAGACTCCAAAAACGTAAAGATCATTAAAA
916981 ACGGGGCTTGGAATCACTTACTATGGAGTTTTAAAGCTTGAAACAAACCCTAGCTATGGAGAACC
131 ACGGGGCTTGGAATCACTTACTATGGAGTTTTAAAGCTTGAAACAAACCCTAGCTATGGAGAACC
917046 CTTGAAATTTCGTCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTCAT
196 CTTGAAATTTCGTCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTCAT
917111 TTTAATAACTAAATAACCAAAATGCCCTTCCTTATTAAACTTTCAAAAATTCCATCCATGTCCTA
261 TTTAATAACTAAATAACCAAAATGCCCTTCCTTATTAAACTTTCAAAAATTCCATCCATGTCCTA
917176 TTTTGTCCATGA
326 TTTTGTCCATGA
917188 TACTAAAATG
Statistics
Matches: 725, Mismatches: 57, Indels: 14
0.91 0.07 0.02
Matches are distributed among these distances:
451 8 0.01
452 409 0.56
453 24 0.03
454 273 0.38
455 11 0.02
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.34
Consensus pattern (454 bp):
TATCATAAAACATCAAAATAAACACTTTTCACCTATGGGTATTTTTCCAAATATGAACCTTAACT
TAAATTATTGCTAGCATAAGCTTTATCGAGCTACCGAGACTCCAAAAACGTAAAGATCATTAAAA
ACGGGGCTTGGAATCACTTACTATGGAGTTTTAAAGCTTGAAACAAACCCTAGCTATGGAGAACC
CTTGAAATTTCGTCCTAATGAAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTCAT
TTTAATAACTAAATAACCAAAATGCCCTTCCTTATTAAACTTTCAAAAATTCCATCCATGTCCTA
TTTTGTCCATGAACTTAGAAATTGGTCAAATTGTTATTTAAACCCTCCTAATTAATATTCCAAAG
CAATTTCATACTAAAAACTTCTATAATGCAAGTTTTGCAAATTATTAGAGTTTGAATTTGATGT
Found at i:917221 original size:63 final size:63
Alignment explanation
Indices: 917129--917249 Score: 183
Period size: 63 Copynumber: 1.9 Consensus size: 63
917119 CTAAATAACC
* *
917129 AAAATGCCCTTCCTTATTAAACTTTCAAAAATTCCATCCATGTCCTA-TTTTGTCCATGATACT
1 AAAATGCCCTTACTTACTAAACTTTCAAAAATTCCATCCATGTCC-AGTTTTGTCCATGATACT
917192 AAAATGCCCTTAC-TACTAAACTTTCCAAAAATTCCATCCATGTCCAGTTTTTGTCCAT
1 AAAATGCCCTTACTTACTAAACTTT-CAAAAATTCCATCCATGTCCAG-TTTTGTCCAT
917250 AGACTTAGAA
Statistics
Matches: 53, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
62 11 0.21
63 32 0.60
64 10 0.19
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (63 bp):
AAAATGCCCTTACTTACTAAACTTTCAAAAATTCCATCCATGTCCAGTTTTGTCCATGATACT
Found at i:938530 original size:13 final size:13
Alignment explanation
Indices: 938514--938538 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
938504 AAAAAAATAT
938514 AAATATTAAATTG
1 AAATATTAAATTG
938527 AAATATTAAATT
1 AAATATTAAATT
938539 TACCGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (13 bp):
AAATATTAAATTG
Found at i:943984 original size:1 final size:1
Alignment explanation
Indices: 943978--944006 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
943968 ATTAGTAAGT
943978 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
944007 CTATGAAAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:944474 original size:65 final size:59
Alignment explanation
Indices: 944396--944520 Score: 187
Period size: 59 Copynumber: 2.0 Consensus size: 59
944386 TTTAAAAGTA
944396 AATATAACTTATAAAAATATATTTTAAAAAATATATATATATGAGAATATTTTAAAGATTTTTGT
1 AATATAACTTAT---AAT-TATTTTAAAAAA-AT-TATATATGAGAATATTTTAAAGATTTTTGT
*
944461 AATATAACTTATAATTTTTTTAAAAAAATTATATATGAGAATATTTTAAAGATTTTTGT
1 AATATAACTTATAATTATTTTAAAAAAATTATATATGAGAATATTTTAAAGATTTTTGT
944520 A
1 A
944521 CCAAAATGAC
Statistics
Matches: 59, Mismatches: 1, Indels: 6
0.89 0.02 0.09
Matches are distributed among these distances:
59 31 0.53
60 2 0.03
61 11 0.19
62 3 0.05
65 12 0.20
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (59 bp):
AATATAACTTATAATTATTTTAAAAAAATTATATATGAGAATATTTTAAAGATTTTTGT
Found at i:945190 original size:31 final size:31
Alignment explanation
Indices: 945155--945217 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
945145 GCCTAAAATA
*
945155 AAATTAATTGAACAATTGAGTAACTATTCTT
1 AAATTAATTCAACAATTGAGTAACTATTCTT
945186 AAATTAATTCAACAATTGAGTAACTATTCTT
1 AAATTAATTCAACAATTGAGTAACTATTCTT
945217 A
1 A
945218 CACTTTAACC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.43, C:0.11, G:0.08, T:0.38
Consensus pattern (31 bp):
AAATTAATTCAACAATTGAGTAACTATTCTT
Found at i:947025 original size:15 final size:15
Alignment explanation
Indices: 947005--947036 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
946995 ATCTTTCATG
947005 TTAAGTTAAGCTTTA
1 TTAAGTTAAGCTTTA
947020 TTAAGTTAAGCTTTA
1 TTAAGTTAAGCTTTA
947035 TT
1 TT
947037 TGATAAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.12, T:0.50
Consensus pattern (15 bp):
TTAAGTTAAGCTTTA
Found at i:950570 original size:30 final size:30
Alignment explanation
Indices: 950529--950585 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
950519 CACGGACTGG
*
950529 CACATAGGCGTGTGGC-CAGCCCGTGTGTCT
1 CACACAGGCGTGT-GCTCAGCCCGTGTGTCT
950559 CACACAGGCGTGTGCTCAGCCCGTGTG
1 CACACAGGCGTGTGCTCAGCCCGTGTG
950586 GGAATGGCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
29 2 0.08
30 23 0.92
ACGTcount: A:0.14, C:0.32, G:0.33, T:0.21
Consensus pattern (30 bp):
CACACAGGCGTGTGCTCAGCCCGTGTGTCT
Found at i:951449 original size:12 final size:12
Alignment explanation
Indices: 951432--951462 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
951422 CATACATATA
951432 TTTTTTTT-ACT
1 TTTTTTTTCACT
951443 TTTTTTTTCACT
1 TTTTTTTTCACT
951455 TTTTTTTT
1 TTTTTTTT
951463 GAATTATGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTTCACT
Found at i:955892 original size:46 final size:45
Alignment explanation
Indices: 955743--955968 Score: 206
Period size: 46 Copynumber: 4.9 Consensus size: 45
955733 ACATATTGAT
* * * * *
955743 GCCGATGCCATATCCCAGATATGGTCTTACACTGGCTCTCACATATCCGT
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCT-T-ACATCT-CGA
955793 GCCGATGCATGTCCCAGACATGTCTTACACTAGC--ACATCTCGTA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCG-A
* *
955837 GCCGATGCATGTTCCAGACATGTCTTACACTTGCTTACATCTCGA
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
* * ** * *
955882 GGCCGATGCATGTCCCAAACATGTCTTGCACTAGCTCT-TGTTTCAA
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCT-TACATCTCGA
* * *
955928 TGTCGATGCATGTCCCAGACATGTCTTACACTGGCTCACAT
1 -GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACAT
955969 AACAACAATG
Statistics
Matches: 147, Mismatches: 23, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
43 2 0.01
44 37 0.25
45 1 0.01
46 75 0.51
47 1 0.01
48 12 0.08
49 12 0.08
50 7 0.05
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTTACATCTCGA
Found at i:958069 original size:18 final size:18
Alignment explanation
Indices: 958048--958086 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
958038 GGGTAAAGGA
958048 GGTGGCGCGGTTGGGGCT
1 GGTGGCGCGGTTGGGGCT
* *
958066 GGT-GCGTGGTTGGGGGT
1 GGTGGCGCGGTTGGGGCT
958083 GGTG
1 GGTG
958087 TGTAGGCGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
17 15 0.83
18 3 0.17
ACGTcount: A:0.00, C:0.10, G:0.64, T:0.26
Consensus pattern (18 bp):
GGTGGCGCGGTTGGGGCT
Found at i:963097 original size:31 final size:31
Alignment explanation
Indices: 963059--963121 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
963049 CCCGTGTGGA
963059 CTGTGTAGATCCTGAAAGTAGCTCGTCTTGT
1 CTGTGTAGATCCTGAAAGTAGCTCGTCTTGT
*
963090 CTGTGTAGATCTTGAAAGTAGCTCGTCTTGT
1 CTGTGTAGATCCTGAAAGTAGCTCGTCTTGT
963121 C
1 C
963122 CGATTTTGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (31 bp):
CTGTGTAGATCCTGAAAGTAGCTCGTCTTGT
Found at i:968142 original size:46 final size:46
Alignment explanation
Indices: 968075--968169 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
968065 ACAACCTGAA
968075 ATCATGCCAAATTTGTTCATTCGGGTTATGACAGAGTCCTCTGGAT
1 ATCATGCCAAATTTGTTCATTCGGGTTATGACAGAGTCCTCTGGAT
968121 ATCATGCCAAATTTGTTCATTCGGGTTATGACAGAGTCCTCTGGAT
1 ATCATGCCAAATTTGTTCATTCGGGTTATGACAGAGTCCTCTGGAT
968167 ATC
1 ATC
968170 CGTAATCACC
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.35
Consensus pattern (46 bp):
ATCATGCCAAATTTGTTCATTCGGGTTATGACAGAGTCCTCTGGAT
Found at i:969280 original size:43 final size:43
Alignment explanation
Indices: 969215--969443 Score: 304
Period size: 43 Copynumber: 5.3 Consensus size: 43
969205 AGTATTCCAT
* *
969215 CAGCATCATAGCCTACTAGGCACGAAGGCCCAAATACACATCAC
1 CAGCA-CAAAGCCTGCTAGGCACGAAGGCCCAAATACACATCAC
** *
969259 CAGCATGAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
1 CAGCACAAAGCCTGCTAGGCACGAAGGCCCAAATACACATCAC
* *
969302 CGGCACGAAGCCTGCTAGGCACGAAGGCCCAAATACACATCA-
1 CAGCACAAAGCCTGCTAGGCACGAAGGCCCAAATACACATCAC
*
969344 CAGGCACAAAGCCTGCTAGGCACGAAGGCCCGAATACACATCAC
1 CA-GCACAAAGCCTGCTAGGCACGAAGGCCCAAATACACATCAC
*
969388 C-GACACAAAGCCTGCTAGGCACGAAGGCCCAAATATA-AT-AC
1 CAG-CACAAAGCCTGCTAGGCACGAAGGCCCAAATACACATCAC
* *
969429 CAGCACTAGGCCTGC
1 CAGCACAAAGCCTGC
969444 GGGATTTATC
Statistics
Matches: 166, Mismatches: 15, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
41 13 0.08
42 5 0.03
43 142 0.86
44 6 0.04
ACGTcount: A:0.34, C:0.33, G:0.21, T:0.11
Consensus pattern (43 bp):
CAGCACAAAGCCTGCTAGGCACGAAGGCCCAAATACACATCAC
Found at i:969330 original size:86 final size:86
Alignment explanation
Indices: 969224--969422 Score: 337
Period size: 86 Copynumber: 2.3 Consensus size: 86
969214 TCAGCATCAT
* **
969224 AGCCTACTAGGCACGAAGGCCCAAATACACATCACCA-GCATGAAGCCTGCTAGGCACGAAGGCC
1 AGCCTGCTAGGCACGAAGGCCCAAATACACATCA-CAGGCACAAAGCCTGCTAGGCACGAAGGCC
* *
969288 CGAATACACATCACCGGCACGA
65 CGAATACACATCACCGACACAA
969310 AGCCTGCTAGGCACGAAGGCCCAAATACACATCACAGGCACAAAGCCTGCTAGGCACGAAGGCCC
1 AGCCTGCTAGGCACGAAGGCCCAAATACACATCACAGGCACAAAGCCTGCTAGGCACGAAGGCCC
969375 GAATACACATCACCGACACAA
66 GAATACACATCACCGACACAA
969396 AGCCTGCTAGGCACGAAGGCCCAAATA
1 AGCCTGCTAGGCACGAAGGCCCAAATA
969423 TAATACCAGC
Statistics
Matches: 107, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
85 2 0.02
86 105 0.98
ACGTcount: A:0.35, C:0.33, G:0.22, T:0.10
Consensus pattern (86 bp):
AGCCTGCTAGGCACGAAGGCCCAAATACACATCACAGGCACAAAGCCTGCTAGGCACGAAGGCCC
GAATACACATCACCGACACAA
Found at i:983552 original size:27 final size:27
Alignment explanation
Indices: 983508--983595 Score: 83
Period size: 27 Copynumber: 3.3 Consensus size: 27
983498 TCATACGAAC
*
983508 ATAAGGGCATAATC-GTCATTCTAC-C-
1 ATAAGGGCATTA-CGGTCATTCTACTCT
* *
983533 ATACAGGGGTATTACGGTCATTTTACTCT
1 ATA-A-GGGCATTACGGTCATTCTACTCT
* *
983562 ATAAGGGCATTACGGTCATTTTACACT
1 ATAAGGGCATTACGGTCATTCTACTCT
983589 ATAAGGG
1 ATAAGGG
983596 TATTTCGATA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
25 3 0.06
26 2 0.04
27 43 0.81
28 2 0.04
29 3 0.06
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32
Consensus pattern (27 bp):
ATAAGGGCATTACGGTCATTCTACTCT
Found at i:983609 original size:27 final size:27
Alignment explanation
Indices: 983543--983612 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
983533 ATACAGGGGT
* * *
983543 ATTACGGTCATTTTACTCTATAAGGGC
1 ATTACGATAATTTTACACTATAAGGGC
* * *
983570 ATTACGGTCATTTTACACTATAAGGGT
1 ATTACGATAATTTTACACTATAAGGGC
*
983597 ATTTCGATAATTTTAC
1 ATTACGATAATTTTAC
983613 CAATATTAGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.40
Consensus pattern (27 bp):
ATTACGATAATTTTACACTATAAGGGC
Found at i:992379 original size:56 final size:56
Alignment explanation
Indices: 992313--992437 Score: 153
Period size: 56 Copynumber: 2.2 Consensus size: 56
992303 GAGATTGGCG
* * * *
992313 CTAAGAGTGCGGGTTTAAATTGTGCAGCACTAAGTGTGTGA-ATTGACTATGTAGCA
1 CTAAGTGTGCGAGTTT-AATTATGCAGCACTAAGTGTGCGAGATTGACTATGTAGCA
* * * *
992369 CTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAATTATGCAGCACTAAGTGTGCGAGATTGACTATGTAGCA
*
992425 CTAGGTGTGCGAG
1 CTAAGTGTGCGAG
992438 CTGATTATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
55 20 0.34
56 39 0.66
ACGTcount: A:0.26, C:0.12, G:0.30, T:0.32
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAATTATGCAGCACTAAGTGTGCGAGATTGACTATGTAGCA
Found at i:992395 original size:28 final size:28
Alignment explanation
Indices: 992338--992462 Score: 173
Period size: 28 Copynumber: 4.5 Consensus size: 28
992328 TAAATTGTGC
* * *
992338 AGCACTAAGTGTGTGA-ATTGACTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
992365 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
992393 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
* * *
992421 AGCACTAGGTGTGCGAG-CTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
992448 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
992463 GACTTAATAT
Statistics
Matches: 89, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
27 36 0.40
28 53 0.60
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:992402 original size:55 final size:55
Alignment explanation
Indices: 992338--992462 Score: 171
Period size: 55 Copynumber: 2.3 Consensus size: 55
992328 TAAATTGTGC
* * *
992338 AGCACTAAGTGTGTGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAG-CTGATTATAT
* * *
992393 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAGGTGTGCGAGCTGATTATAT
1 AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGCTGATTATAT
*
992448 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
992463 GACTTAATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 37 0.60
56 25 0.40
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.32
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGATTGACTATGTAGCACTAAGTGTGCGAGCTGATTATAT
Found at i:995692 original size:46 final size:45
Alignment explanation
Indices: 995625--995791 Score: 153
Period size: 46 Copynumber: 3.6 Consensus size: 45
995615 CACCCCTAAG
995625 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCGTT-GCATCCATAAA
* * *
995671 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGCTCGG--G-C--GTTGCATCCATAAA
* * * * * *
995718 CGAACTCGGACTCAACTCAACAAGCTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTCGGGC-GTTGCATCCATAAA
*
995764 TGAACT-GGACTCAACTCAACGAGTTCGG
1 TGAACTCGGACTCAACTCAACGAGCTCGG
995792 ATGCTCAACC
Statistics
Matches: 97, Mismatches: 16, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 20 0.21
46 33 0.34
47 26 0.27
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (45 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGGCGTTGCATCCATAAA
Found at i:995736 original size:93 final size:92
Alignment explanation
Indices: 995626--995795 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 92
995616 ACCCCTAAGT
* * * *
995626 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAATGAACT-GGACTCAACTCAA
995691 CGAGTTCGGATGCCTAGTTACATCTCAC
65 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
995719 GAACTCGGACTCAACTCAACAAGCTCAGACATTTGCATCCATAAGTGAACTGGACTCAACTCAAC
1 GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAATGAACTGGACTCAACTCAAC
995784 GAGTTCGGATGC
66 GAGTTCGGATGC
995796 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
92 26 0.37
93 45 0.63
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (92 bp):
GAACTCGGACTCAACTCAACAAGCTCAGACATTCGCATCCATAAATGAACTGGACTCAACTCAAC
GAGTTCGGATGCCTAGTTACATCTCAC
Found at i:1003315 original size:46 final size:46
Alignment explanation
Indices: 1003248--1003410 Score: 163
Period size: 46 Copynumber: 3.5 Consensus size: 46
1003238 CGCCCCTAAG
*
1003248 TGAACTCGAACTCAACTCAACGAGCTCGGGC-GATTGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCAG-TTGCATCCATAAA
* * *
1003294 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGCTCGG--G-C-AGTTGCATCCATAAA
* * * * *
1003341 CGAACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGCTCGGGCAGTTGCATCCATAAA
*
1003387 TGAGCTCGGACTCAACTCAACGAG
1 TGAACTCGGACTCAACTCAACGAG
1003411 TTTGGATGCT
Statistics
Matches: 95, Mismatches: 14, Indels: 16
0.76 0.11 0.13
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 49 0.52
47 27 0.28
48 2 0.02
49 2 0.02
50 5 0.05
51 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.20, T:0.21
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGCTCGGGCAGTTGCATCCATAAA
Found at i:1003355 original size:93 final size:93
Alignment explanation
Indices: 1003249--1003419 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
1003239 GCCCCTAAGT
* *
1003249 GAACTCGAACTCAACTCAACGAGCTCGGGCGA-TTGCATCCATAAATGAACTCGGACTCAACTCA
1 GAACTCGAACTCAACTCAACGAGCTCAGAC-ATTTGCATCCATAAATGAACTCGGACTCAACTCA
1003313 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* * *
1003342 GAACTCGGACTCAACTCAACGAGCTCAGACATTTGCATCCATAAGTGAGCTCGGACTCAACTCAA
1 GAACTCGAACTCAACTCAACGAGCTCAGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
*
1003407 CGAGTTTGGATGC
66 CGAGTTCGGATGC
1003420 TCAACCATCC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 1 0.01
93 70 0.99
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (93 bp):
GAACTCGAACTCAACTCAACGAGCTCAGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:1003871 original size:29 final size:30
Alignment explanation
Indices: 1003838--1003897 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
1003828 CATTTAATAC
*
1003838 AAAC-TTTGGAAAATTACACCTTTGCCCCT
1 AAACTTTTGCAAAATTACACCTTTGCCCCT
* * *
1003867 AAACTTTTTCATAATTACACTTTTGCCCCT
1 AAACTTTTGCAAAATTACACCTTTGCCCCT
1003897 A
1 A
1003898 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.30, C:0.27, G:0.07, T:0.37
Consensus pattern (30 bp):
AAACTTTTGCAAAATTACACCTTTGCCCCT
Found at i:1007912 original size:27 final size:27
Alignment explanation
Indices: 1007880--1007998 Score: 157
Period size: 27 Copynumber: 4.4 Consensus size: 27
1007870 TGTCATAATT
* * * *
1007880 GTCATTTTAACATACAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGCATTACA
*
1007907 GTCATTTTACCCTATAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACA
*
1007934 GTCATTTTACCCTACAAGGGCATTACA
1 GTCATTTTACCCTACAGGGGCATTACA
* **
1007961 ATCATTTTACCCTACAGGGATATTACA
1 GTCATTTTACCCTACAGGGGCATTACA
1007988 GTCATTTTACC
1 GTCATTTTACC
1007999 TTAGATCATT
Statistics
Matches: 80, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 80 1.00
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.34
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGCATTACA
Found at i:1008038 original size:41 final size:42
Alignment explanation
Indices: 1007961--1008039 Score: 126
Period size: 42 Copynumber: 1.9 Consensus size: 42
1007951 GGGCATTACA
1007961 ATCATTTTACCCTACAGGGATATTACAGTCATTTTACCTTAG
1 ATCATTTTACCCTACAGGGATATTACAGTCATTTTACCTTAG
*
1008003 ATCATTTTATCCTACAGGG-TATTAC-GATCATTTTACC
1 ATCATTTTACCCTACAGGGATATTACAG-TCATTTTACC
1008040 CTACAAGAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
40 1 0.03
41 16 0.46
42 18 0.51
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.39
Consensus pattern (42 bp):
ATCATTTTACCCTACAGGGATATTACAGTCATTTTACCTTAG
Found at i:1008061 original size:27 final size:27
Alignment explanation
Indices: 1008002--1008276 Score: 349
Period size: 27 Copynumber: 10.3 Consensus size: 27
1007992 TTTTACCTTA
*
1008002 GATCATTTTATCCTAC-AGGGTATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
* *
1008028 GATCATTTTACCCTACAAGAGCATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
*
1008055 GATCATTTTATCCTAC-AGGGTATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
*
1008081 GATCATTTTACCCTACAGGGGTATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
* * * *
1008108 GGTCATTTTACCCTATAGGGGCATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
* * *
1008135 GGTCATTTTACCCTATAGGGGTATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
* *
1008162 GATCATTTTACCCTACAAGAGCATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
*
1008189 GATCATTTTATCCTAC-AGGGTATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
*
1008215 GATCATTTTACCCTACAGGGGTATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
* * * *
1008242 GGTCATTTTACCCTATAAAGGCATTAC
1 GATCATTTTACCCTACAAGGGTATTAC
1008269 GATCATTT
1 GATCATTT
1008277 AACTAATTTT
Statistics
Matches: 218, Mismatches: 28, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
26 61 0.28
27 157 0.72
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.35
Consensus pattern (27 bp):
GATCATTTTACCCTACAAGGGTATTAC
Found at i:1008082 original size:53 final size:53
Alignment explanation
Indices: 1008002--1008276 Score: 354
Period size: 53 Copynumber: 5.2 Consensus size: 53
1007992 TTTTACCTTA
* * *
1008002 GATCATTTTATCCTACAGGGTATTACGATCATTTTACCCTACAAGAGCATTAC
1 GATCATTTTACCCTACAGGGTATTACGATCATTTTACCCTACAAGGGTATTAC
* *
1008055 GATCATTTTATCCTACAGGGTATTACGATCATTTTACCCTACAGGGGTATTAC
1 GATCATTTTACCCTACAGGGTATTACGATCATTTTACCCTACAAGGGTATTAC
* * * * * *
1008108 GGTCATTTTACCCTATAGGGGCATTACGGTCATTTTACCCTATAGGGGTATTAC
1 GATCATTTTACCCTACA-GGGTATTACGATCATTTTACCCTACAAGGGTATTAC
* * *
1008162 GATCATTTTACCCTACAAGAGCATTACGATCATTTTATCCTAC-AGGGTATTAC
1 GATCATTTTACCCTAC-AGGGTATTACGATCATTTTACCCTACAAGGGTATTAC
* * * *
1008215 GATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAAAGGCATTAC
1 GATCATTTTACCCTACA-GGGTATTACGATCATTTTACCCTACAAGGGTATTAC
1008269 GATCATTT
1 GATCATTT
1008277 AACTAATTTT
Statistics
Matches: 195, Mismatches: 23, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
52 1 0.01
53 109 0.56
54 84 0.43
55 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.35
Consensus pattern (53 bp):
GATCATTTTACCCTACAGGGTATTACGATCATTTTACCCTACAAGGGTATTAC
Found at i:1008265 original size:134 final size:133
Alignment explanation
Indices: 1008002--1008276 Score: 496
Period size: 134 Copynumber: 2.1 Consensus size: 133
1007992 TTTTACCTTA
*
1008002 GATCATTTTATCCTACAGGGTATTACGATCATTTTACCCTACAAGAGCATTACGATCATTTTATC
1 GATCATTTTACCCTACAGGGTATTACGATCATTTTACCCTACAAGAGCATTACGATCATTTTATC
**
1008067 CTACAGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAGGGGCAT
66 CTACAGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAAAGGCAT
1008132 TAC
131 TAC
* *
1008135 GGTCATTTTACCCTATAGGGGTATTACGATCATTTTACCCTACAAGAGCATTACGATCATTTTAT
1 GATCATTTTACCCTACA-GGGTATTACGATCATTTTACCCTACAAGAGCATTACGATCATTTTAT
1008200 CCTACAGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAAAGGCA
65 CCTACAGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAAAGGCA
1008265 TTAC
130 TTAC
1008269 GATCATTT
1 GATCATTT
1008277 AACTAATTTT
Statistics
Matches: 135, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
133 14 0.10
134 121 0.90
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.35
Consensus pattern (133 bp):
GATCATTTTACCCTACAGGGTATTACGATCATTTTACCCTACAAGAGCATTACGATCATTTTATC
CTACAGGGTATTACGATCATTTTACCCTACAGGGGTATTACGGTCATTTTACCCTATAAAGGCAT
TAC
Found at i:1011572 original size:45 final size:45
Alignment explanation
Indices: 1011481--1011605 Score: 135
Period size: 45 Copynumber: 2.8 Consensus size: 45
1011471 TAGGATTTTG
* * * * *
1011481 ATATGTATTTTTGAGTAAGACCACGTTTGGGACGTTGGAAATGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGAAATGAT
* *
1011526 ATATGTGTTTTCGTGTAAGACCACGTCTGGAACATTGG-CATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGAAAT-GAT
* * * *
1011571 ATATGTGGTTACGTGTAAAACCATGTCTGGGACAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTGGGACAT
1011606 CAGCATCGTA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
44 2 0.03
45 65 0.97
ACGTcount: A:0.27, C:0.14, G:0.26, T:0.34
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTGGGACATTGGAAATGAT
Found at i:1021485 original size:112 final size:111
Alignment explanation
Indices: 1021330--1021542 Score: 345
Period size: 112 Copynumber: 1.9 Consensus size: 111
1021320 ACCTGGAAGT
* *
1021330 ATATGTGGCATCGATATGTGACTTTGATATAAGTGTGCGAGTAAGTCCACATTTAATACGTTGGC
1 ATATGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGC
* *
1021395 ATTGATATGTGATTCCGATATATGTGTGCGAGTAAGTCTACGTTTC
66 ATCGATATGTGATTCCGATATATGTGTACGAGTAAGTCTACGTTTC
* * *
1021441 ATATGTTGGCATCGATATGTGACTCTGATATATGTGTGTGAGTAAGACCACGTTTAATACGTTGG
1 ATATG-TGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGG
*
1021506 CATCGATATGTGATTTCGATATATGTGTACGAGTAAG
65 CATCGATATGTGATTCCGATATATGTGTACGAGTAAG
1021543 ACCTTGTATG
Statistics
Matches: 93, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
111 5 0.05
112 88 0.95
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.36
Consensus pattern (111 bp):
ATATGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGC
ATCGATATGTGATTCCGATATATGTGTACGAGTAAGTCTACGTTTC
Found at i:1021543 original size:56 final size:56
Alignment explanation
Indices: 1021335--1021545 Score: 282
Period size: 56 Copynumber: 3.8 Consensus size: 56
1021325 GAAGTATATG
* * *
1021335 TGGCATCGATATGTGACTTT-GATATAAGTGTGCGAGTAAGTCCACATTTAATACGT
1 TGGCATCGATATGTGA-TTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
* * * * * *
1021391 TGGCATTGATATGTGATTCCGATATATGTGTGCGAGTAAGTCTACGTTTCATATGT
1 TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
* *
1021447 TGGCATCGATATGTGA-CTCTGATATATGTGTGTGAGTAAGACCACGTTTAATACGT
1 TGGCATCGATATGTGATTTC-GATATATGTGTGCGAGTAAGACCACGTTTAATACGT
*
1021503 TGGCATCGATATGTGATTTCGATATATGTGTACGAGTAAGACC
1 TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACC
1021546 TTGTATGAGG
Statistics
Matches: 134, Mismatches: 18, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
55 3 0.02
56 129 0.96
57 2 0.01
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.35
Consensus pattern (56 bp):
TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACCACGTTTAATACGT
Found at i:1021563 original size:56 final size:54
Alignment explanation
Indices: 1021334--1021576 Score: 172
Period size: 56 Copynumber: 4.4 Consensus size: 54
1021324 GGAAGTATAT
* * *** * *
1021334 GTGGCATCGATATGTGACTTT-GATATAAGTGTGCGAGTAAGTCCACATTTAATA
1 GTGGCATCGATATGTGA-TTTCGATATATGTGTGCGAGTAAGACCTTGTATAGTA
* * *
1021388 CGTTGGCATTGATATGTGATTCCGATATATGTGTGCGAGTAAGTCTACGTT-TCATA-T-
1 -G-TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAG---ACCTTGT-ATAGTA
* * ** * *
1021445 GTTGGCATCGATATGTGA-CTCTGATATATGTGTGTGAGTAAGACCACGTTTAATA
1 G-TGGCATCGATATGTGATTTC-GATATATGTGTGCGAGTAAGACCTTGTATAGTA
*
1021500 CGTTGGCATCGATATGTGATTTCGATATATGTGTACGAGTAAGACCTTGTATGAGGTA
1 -G-TGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACCTTGTAT-A-GTA
*
1021558 GTGGCATCGTTATGTGATT
1 GTGGCATCGATATGTGATT
1021577 ACACGTAAGA
Statistics
Matches: 150, Mismatches: 24, Indels: 27
0.75 0.12 0.13
Matches are distributed among these distances:
53 4 0.03
54 2 0.01
55 4 0.03
56 129 0.86
57 4 0.03
58 4 0.03
59 3 0.02
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (54 bp):
GTGGCATCGATATGTGATTTCGATATATGTGTGCGAGTAAGACCTTGTATAGTA
Found at i:1021563 original size:112 final size:111
Alignment explanation
Indices: 1021333--1021574 Score: 319
Period size: 112 Copynumber: 2.2 Consensus size: 111
1021323 TGGAAGTATA
* * *
1021333 TGTGGCATCGATATGTGACTTTGATATAAGTGTGCGAGTAAGTCCACATTTAATACGTTGGCATT
1 TGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGCATC
* * *
1021398 GATATGTGATTCCGATATATGTGTGCGAGTAAGTCTACGTTTCATATG
66 GATATGTGATTCCGATATATGTGTACGAGTAAG--TACCTTTCATAGG
* * *
1021446 T-TGGCATCGATATGTGACTCTGATATATGTGTGTGAGTAAGACCACGTTTAATACGTTGGCATC
1 TGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGCATC
*
1021510 GATATGTGATTTCGATATATGTGTACGAGTAAG-ACCTTGT-ATGAGG
66 GATATGTGATTCCGATATATGTGTACGAGTAAGTACCTT-TCAT-AGG
*
1021556 TAGTGGCATCGTTATGTGA
1 T-GTGGCATCGATATGTGA
1021575 TTACACGTAA
Statistics
Matches: 114, Mismatches: 11, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
109 6 0.05
110 4 0.04
112 103 0.90
113 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (111 bp):
TGTGGCATCGATATGTGACTCTGATATAAGTGTGCGAGTAAGACCACATTTAATACGTTGGCATC
GATATGTGATTCCGATATATGTGTACGAGTAAGTACCTTTCATAGG
Found at i:1023267 original size:22 final size:22
Alignment explanation
Indices: 1023242--1023286 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
1023232 ATATGTTCGA
1023242 CATATGTATAAGTTATGCTGAT
1 CATATGTATAAGTTATGCTGAT
1023264 CATATGTATAAGTTATGCTGAT
1 CATATGTATAAGTTATGCTGAT
1023286 C
1 C
1023287 TACTTTGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (22 bp):
CATATGTATAAGTTATGCTGAT
Found at i:1028889 original size:22 final size:22
Alignment explanation
Indices: 1028857--1028917 Score: 99
Period size: 22 Copynumber: 2.9 Consensus size: 22
1028847 TAGGGTTTAG
1028857 AAGA-AGA-AAGAATCGGACAC
1 AAGATAGAGAAGAATCGGACAC
*
1028877 AAGATAGAGAAGAATCAGACAC
1 AAGATAGAGAAGAATCGGACAC
1028899 AAGATAGAGAAGAATCGGA
1 AAGATAGAGAAGAATCGGA
1028918 GGGTTTGGCT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.11
21 3 0.08
22 30 0.81
ACGTcount: A:0.54, C:0.11, G:0.26, T:0.08
Consensus pattern (22 bp):
AAGATAGAGAAGAATCGGACAC
Found at i:1029101 original size:10 final size:10
Alignment explanation
Indices: 1029086--1029124 Score: 51
Period size: 10 Copynumber: 3.6 Consensus size: 10
1029076 TGAAGAGAGG
1029086 AAAAAAGAAA
1 AAAAAAGAAA
1029096 AAAAAAGAAA
1 AAAAAAGAAA
1029106 AGAAAATAGAAGA
1 A-AAAA-AGAA-A
1029119 AAAAAA
1 AAAAAA
1029125 CTAAATCCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 11 0.42
11 5 0.19
12 8 0.31
13 2 0.08
ACGTcount: A:0.85, C:0.00, G:0.13, T:0.03
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:1029108 original size:15 final size:15
Alignment explanation
Indices: 1029088--1029121 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1029078 AAGAGAGGAA
1029088 AAAAGAAAAAAAAAG
1 AAAAGAAAAAAAAAG
* *
1029103 AAAAGAAAATAGAAG
1 AAAAGAAAAAAAAAG
1029118 AAAA
1 AAAA
1029122 AAACTAAATC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (15 bp):
AAAAGAAAAAAAAAG
Found at i:1029339 original size:39 final size:39
Alignment explanation
Indices: 1029285--1029362 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
1029275 TAGACCCCAA
*
1029285 CTCTTTCTCCACGCATGCAGCAAAAATACCAACCTTGCG
1 CTCTTTCCCCACGCATGCAGCAAAAATACCAACCTTGCG
1029324 CTCTTTCCCCACGCATGCAGCAAAAATACCAACCTTGCG
1 CTCTTTCCCCACGCATGCAGCAAAAATACCAACCTTGCG
1029363 TGCGCGAGAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.37, G:0.13, T:0.22
Consensus pattern (39 bp):
CTCTTTCCCCACGCATGCAGCAAAAATACCAACCTTGCG
Found at i:1031754 original size:39 final size:38
Alignment explanation
Indices: 1031626--1031754 Score: 114
Period size: 39 Copynumber: 3.2 Consensus size: 38
1031616 AGCGGCGCTT
**
1031626 TTAGCGGCGATTGGACAACAAACGCCGCTAAAAATTAAGCA
1 TTAGCGGCGATTTAACAA-AAACGCCGCT-AAAA-TAAGCA
* * * *
1031667 TTAGCGGTGATTTAAAAAAAAACGCCGCTAAATATCAGTA
1 TTAGCGGCGATTT-AACAAAAACGCCGCTAAA-ATAAGCA
* * * *
1031707 TTACCGGCGCTTTTACAAAAACGCCGCTAATAATGAGCA
1 TTAGCGGCGATTTAACAAAAACGCCGCTAA-AATAAGCA
1031746 TTAGCGGCG
1 TTAGCGGCG
1031755 TTTCTTAAAA
Statistics
Matches: 71, Mismatches: 14, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
39 28 0.39
40 18 0.25
41 22 0.31
42 3 0.04
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.22
Consensus pattern (38 bp):
TTAGCGGCGATTTAACAAAAACGCCGCTAAAATAAGCA
Found at i:1031954 original size:113 final size:113
Alignment explanation
Indices: 1031746--1032058 Score: 380
Period size: 113 Copynumber: 2.8 Consensus size: 113
1031736 ATAATGAGCA
* * * *
1031746 TTAGCGGCGTTTCTTAAAAAGTGCCGCTAAAAACCTAAACCAAACGACGTCGTTTTTCTTAGTTT
1 TTAGCGGCGTTTCTTAAAAAGCGCCGC-AAAAACCTAAGCCCAACGACATCGTTTTTCTTAGTTT
* * *
1031811 TCGAGGCTTTGGTGGCGTTTTTGGAGAAGCGCAAG-TAATTCTCAGGGCT
65 TCGAGGCTTTGGTGGCGTTTTGGGAGAAGCGC-AGCTAATGCTCAAGGCT
* *
1031860 TTAGCAGCGTTTCTTAAAAAGCGCCGCAAAAGACCTAAGCCCAACGACATC-ATTTTCTTAGTTT
1 TTAGCGGCGTTTCTTAAAAAGCGCCGCAAAA-ACCTAAGCCCAACGACATCGTTTTTCTTAGTTT
* * *
1031924 TCGAGGCTTTGGTGGCGTTTTCGGGA-AAGCGCCGCTAATGCTCAATGTT
65 TCGAGGCTTTGGTGGCGTTTT-GGGAGAAGCGCAGCTAATGCTCAAGGCT
* * * * *
1031973 TTAGCGGCATTTTTTAAAAATCGCCACAAAAAACTGAAGCCCAACGACATCGTTTTTCTTAGTTT
1 TTAGCGGCGTTTCTTAAAAAGCGCCGCAAAAACCT-AAGCCCAACGACATCGTTTTTCTTAGTTT
** *
1032038 GGGAGGCTTTAGTGGCGTTTT
65 TCGAGGCTTTGGTGGCGTTTT
1032059 TGTAAAAGCG
Statistics
Matches: 172, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
112 4 0.02
113 94 0.55
114 74 0.43
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.31
Consensus pattern (113 bp):
TTAGCGGCGTTTCTTAAAAAGCGCCGCAAAAACCTAAGCCCAACGACATCGTTTTTCTTAGTTTT
CGAGGCTTTGGTGGCGTTTTGGGAGAAGCGCAGCTAATGCTCAAGGCT
Found at i:1032574 original size:7 final size:7
Alignment explanation
Indices: 1032541--1032714 Score: 51
Period size: 7 Copynumber: 25.1 Consensus size: 7
1032531 TGCAAATTAT
1032541 GGGTTTA
1 GGGTTTA
* *
1032548 GTGATTA
1 GGGTTTA
*
1032555 TGGTTTA
1 GGGTTTA
**
1032562 CAGTTTA
1 GGGTTTA
1032569 GGGTTTA
1 GGGTTTA
* *
1032576 TGAG-TTG
1 -GGGTTTA
1032583 GGGTTTA
1 GGGTTTA
*
1032590 AGGTTTA
1 GGGTTTA
1032597 CGGG-TT-
1 -GGGTTTA
* *
1032603 GGGGTTG
1 GGGTTTA
1032610 GGGTTTA
1 GGGTTTA
*
1032617 AGGTTTA
1 GGGTTTA
*
1032624 CGGG-TTG
1 -GGGTTTA
*
1032631 GGGTTCA
1 GGGTTTA
*
1032638 GGGTCTA
1 GGGTTTA
*
1032645 -GG-CTA
1 GGGTTTA
1032650 -GGTTTA
1 GGGTTTA
*
1032656 GGGATTA
1 GGGTTTA
* *
1032663 TGATTT-
1 GGGTTTA
1032669 GGGTTTA
1 GGGTTTA
1032676 GGGTTTAA
1 GGGTTT-A
1032684 GGGATTTAA
1 GGG-TTT-A
1032693 GGG-TTA
1 GGGTTTA
*
1032699 TGTGTTTA
1 -GGGTTTA
1032707 GGGTTTA
1 GGGTTTA
1032714 G
1 G
1032715 ATTGATTAGT
Statistics
Matches: 120, Mismatches: 33, Indels: 28
0.66 0.18 0.15
Matches are distributed among these distances:
5 8 0.07
6 16 0.13
7 75 0.62
8 13 0.11
9 8 0.07
ACGTcount: A:0.17, C:0.03, G:0.39, T:0.40
Consensus pattern (7 bp):
GGGTTTA
Found at i:1032588 original size:21 final size:21
Alignment explanation
Indices: 1032564--1032616 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
1032554 ATGGTTTACA
*
1032564 GTTTAGGGTTTATGAGTTGGG
1 GTTTAGGGTTTACGAGTTGGG
* *
1032585 GTTTAAGGTTTACGGGTTGGG
1 GTTTAGGGTTTACGAGTTGGG
*
1032606 G-TTGGGGTTTA
1 GTTTAGGGTTTA
1032617 AGGTTTACGG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 8 0.30
21 19 0.70
ACGTcount: A:0.13, C:0.02, G:0.43, T:0.42
Consensus pattern (21 bp):
GTTTAGGGTTTACGAGTTGGG
Found at i:1032616 original size:27 final size:27
Alignment explanation
Indices: 1032579--1032635 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
1032569 GGGTTTATGA
1032579 GTTGGGGTTTAAGGTTTACGGGTTGGG
1 GTTGGGGTTTAAGGTTTACGGGTTGGG
1032606 GTTGGGGTTTAAGGTTTACGGGTTGGG
1 GTTGGGGTTTAAGGTTTACGGGTTGGG
1032633 GTT
1 GTT
1032636 CAGGGTCTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.11, C:0.04, G:0.47, T:0.39
Consensus pattern (27 bp):
GTTGGGGTTTAAGGTTTACGGGTTGGG
Found at i:1033285 original size:75 final size:74
Alignment explanation
Indices: 1033162--1033307 Score: 177
Period size: 75 Copynumber: 1.9 Consensus size: 74
1033152 ATTTAAAGGA
* * *
1033162 ATTTTGTTTCAATAAAAACGGCAGTGTTCTATAGGATATATTAGTGGCGTTTTGGGTAAAACACC
1 ATTTTGTTTCAATAAAAACGGCA-CGTTCTATAAGATATATTACTGGCGTTTTGGGTAAAACACC
1033227 GCAAAATGTG
65 GCAAAATGTG
* * * * *
1033237 ATTTTGTTTCAATAAAAACGTTGC-CGTTCTGTAAGATTTCTTACTGGCGTTTTTGGTAAAACGC
1 ATTTTGTTTCAATAAAAACG--GCACGTTCTATAAGATATATTACTGGCGTTTTGGGTAAAACAC
*
1033301 CGGAAAA
64 CGCAAAA
1033308 GATCATCCTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
75 58 0.97
77 2 0.03
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (74 bp):
ATTTTGTTTCAATAAAAACGGCACGTTCTATAAGATATATTACTGGCGTTTTGGGTAAAACACCG
CAAAATGTG
Found at i:1033502 original size:114 final size:115
Alignment explanation
Indices: 1033247--1033503 Score: 277
Period size: 114 Copynumber: 2.3 Consensus size: 115
1033237 ATTTTGTTTC
* *
1033247 AATAAAAACGTTGCCGTTCTGTAAGATTTCTTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
1 AATAAAAACGTTGCCGTTCTGTAGGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
* * * * * * * *
1033312 ATCCTTTAGCGGCGCTATGTCAAAAATGCCGCAAAATGTGATTCTGTTTT
66 AGCCTTTAGCGGCGCTACGTCAAAAACGCCACAAAATGTCAATCGGTTAT
* ** * *
1033362 AAT-AAAACGCTGCCGTGGTGTAGGATTTATTAGTGGCGTTTTTTGTAAAACGCC-GAAAACG-T
1 AATAAAAACGTTGCCGTTCTGTAGGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAA-GAT
* *** * *
1033424 CAGCCTTTAGCGGCGCTGCGTTGGAAACGCCACAAAATTTCAATGGGTTAT
65 CAGCCTTTAGCGGCGCTACGTCAAAAACGCCACAAAATGTCAATCGGTTAT
* *
1033475 AATAAAAACGTTGCCGTTTTGTTGGATTT
1 AATAAAAACGTTGCCGTTCTGTAGGATTT
1033504 TGTGTTGACC
Statistics
Matches: 115, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
113 46 0.40
114 66 0.57
115 3 0.03
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.32
Consensus pattern (115 bp):
AATAAAAACGTTGCCGTTCTGTAGGATTTATTACTGGCGTTTTTGGTAAAACGCCGGAAAAGATC
AGCCTTTAGCGGCGCTACGTCAAAAACGCCACAAAATGTCAATCGGTTAT
Found at i:1033764 original size:74 final size:74
Alignment explanation
Indices: 1033592--1033837 Score: 420
Period size: 74 Copynumber: 3.3 Consensus size: 74
1033582 GGCGCTTATC
*
1033592 TTAAAACGCCGCAAGAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGT
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCG-TTTTTTATGTATTTAGT
1033657 GGCGTTTTTA
65 GGCGTTTTTA
1033667 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
*
1033732 GCGTTTTTT
66 GCGTTTTTA
** *
1033741 TTAAAACGCCGCAATCATTTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
1 TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
*
1033806 GCGTTTTTG
66 GCGTTTTTA
1033815 TTAAAACGCCGCAAAAGATGTTA
1 TTAAAACGCCGCAAAA-ATGTTA
1033838 CTTTAGCGGC
Statistics
Matches: 161, Mismatches: 9, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
74 110 0.68
75 51 0.32
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.41
Consensus pattern (74 bp):
TTAAAACGCCGCAAAAATGTTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTG
GCGTTTTTA
Found at i:1033951 original size:115 final size:115
Alignment explanation
Indices: 1033760--1034057 Score: 517
Period size: 115 Copynumber: 2.6 Consensus size: 115
1033750 CGCAATCATT
1033760 TTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCC
1 TTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCC
* * *
1033825 GCAAAAGATGTTACTTTAGCGGCGCTTCTTTTAAAATGCCAC-AAAAATG
66 GCAAAAGATGTTACTTTAGCGGCGCTTATCTTAAAACGCCACAAAAAATG
* *
1033874 TTATTATGTGTTTACCAAAACGTGACCGTTTTTTTATGTATTTAGTGGCGTTTTTGTTAAAATGC
1 TTATTTTGTGTTTACCAAAACGTGACCG-TTTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGC
* *
1033939 CGCAAAATATGTTACTTTAGCGGCGCTTATCTTAAAACGCCGCAAAAAATG
65 CGCAAAAGATGTTACTTTAGCGGCGCTTATCTTAAAACGCCACAAAAAATG
1033990 TTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCC
1 TTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCC
1034055 GCA
66 GCA
1034058 GGTGTTTATT
Statistics
Matches: 173, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
114 27 0.16
115 112 0.65
116 34 0.20
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (115 bp):
TTATTTTGTGTTTACCAAAACGTGACCGTTTTTTATGTATTTAGTGGCGTTTTTGTTAAAACGCC
GCAAAAGATGTTACTTTAGCGGCGCTTATCTTAAAACGCCACAAAAAATG
Found at i:1035206 original size:53 final size:53
Alignment explanation
Indices: 1035126--1035600 Score: 777
Period size: 53 Copynumber: 9.3 Consensus size: 53
1035116 TGAATAAATA
1035126 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1035179 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1035232 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1035285 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1035338 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1035391 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACA--T---T
1 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
* *
1035439 T--A--ACTTACATAATACAT-TTAACTTACAACTTACACAATACATTTAACT
1 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1035487 TACA--ACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
1 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
* * *
1035538 TACA--ACTTACACAATACAT-TTAACTTACAACTTACATAATACATAATAACT
1 TACATTACTTACATAATACATAATAACTTACAACTTACATAATACAT-TTAACT
1035589 TACA--ACTTACAT
1 TACATTACTTACAT
1035601 TTAACTTACA
Statistics
Matches: 405, Mismatches: 8, Indels: 20
0.94 0.02 0.05
Matches are distributed among these distances:
43 22 0.05
44 15 0.04
45 1 0.00
46 1 0.00
48 4 0.01
50 40 0.10
51 64 0.16
53 258 0.64
ACGTcount: A:0.45, C:0.20, G:0.00, T:0.35
Consensus pattern (53 bp):
TACATTACTTACATAATACATAATAACTTACAACTTACATAATACATTTAACT
Found at i:1035608 original size:11 final size:10
Alignment explanation
Indices: 1035592--1035645 Score: 55
Period size: 9 Copynumber: 5.7 Consensus size: 10
1035582 AATAACTTAC
1035592 AACTTACATTT
1 AACTTACA-TT
1035603 AACTTACA-T
1 AACTTACATT
1035612 AA--TACATTT
1 AACTTACA-TT
1035621 AACTTACA-T
1 AACTTACATT
1035630 AACTTACA-T
1 AACTTACATT
1035639 AACTTAC
1 AACTTAC
1035646 CATTGCAATT
Statistics
Matches: 39, Mismatches: 0, Indels: 10
0.80 0.00 0.20
Matches are distributed among these distances:
7 4 0.10
9 23 0.59
11 12 0.31
ACGTcount: A:0.43, C:0.20, G:0.00, T:0.37
Consensus pattern (10 bp):
AACTTACATT
Found at i:1037698 original size:14 final size:14
Alignment explanation
Indices: 1037679--1037712 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
1037669 ATTGCTATTG
1037679 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
1037693 GTTGCTTTTGAAAT
1 GTTGCTTTTGAAAT
*
1037707 TTTGCT
1 GTTGCT
1037713 ACAGGAGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.18, C:0.09, G:0.21, T:0.53
Consensus pattern (14 bp):
GTTGCTTTTGAAAT
Found at i:1037834 original size:42 final size:42
Alignment explanation
Indices: 1037780--1037901 Score: 190
Period size: 42 Copynumber: 2.9 Consensus size: 42
1037770 TTTTGTATAA
* *
1037780 AAGCGCCACTAAAGAACATGTTCTTTAGCGGCGTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* *
1037822 AAGCGCCGCTAAAGAACATGATCTTTAGCAGCTTTTTTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
* *
1037864 AAGCGCCGCTAAAGAACATGGTCTTTAACGGCGTTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
1037902 GTTTGTAAAC
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCT
Found at i:1038585 original size:10 final size:10
Alignment explanation
Indices: 1038565--1038602 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
1038555 CCTAAAATTG
1038565 ACTATCATCC
1 ACTATCATCC
* *
1038575 ATTATCCTCC
1 ACTATCATCC
1038585 ACTATCATCC
1 ACTATCATCC
1038595 ACTATCAT
1 ACTATCAT
1038603 GTTAATGGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.29, C:0.37, G:0.00, T:0.34
Consensus pattern (10 bp):
ACTATCATCC
Found at i:1045940 original size:27 final size:27
Alignment explanation
Indices: 1045916--1046095 Score: 247
Period size: 27 Copynumber: 6.7 Consensus size: 27
1045906 TTTGTAGAAC
* * *
1045916 TACCATTTTACCCTCGATTTATAGAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
* *
1045943 TA-CGTTTCACCCTTGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
* *
1045969 TACCGTTTTACCCTCGATTTATAGAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
*
1045996 TACCATTTTACCCTCGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
*
1046023 TACCGTTTTACACTCGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTACAAAAT
*
1046050 TACCATTTTACCCTC-AGTTTACAAAAT
1 TACCGTTTTACCCTCGA-TTTACAAAAT
1046077 TACCGTTTTACCCTCGATT
1 TACCGTTTTACCCTCGATT
1046096 GTGAAATTAC
Statistics
Matches: 133, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
26 22 0.17
27 110 0.83
28 1 0.01
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCGTTTTACCCTCGATTTACAAAAT
Found at i:1046030 original size:54 final size:54
Alignment explanation
Indices: 1045916--1046095 Score: 274
Period size: 54 Copynumber: 3.4 Consensus size: 54
1045906 TTTGTAGAAC
* * * *
1045916 TACCATTTTACCCTCGATTTATAGAATTA-CGTTTCACCCTTGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAAT
1045969 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAAT
* * *
1046023 TACCGTTTTACACTCGATTTACAAAATTACCATTTTACCCTC-AGTTTACAAAAT
1 TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGA-TTTACAAAAT
1046077 TACCGTTTTACCCTCGATT
1 TACCGTTTTACCCTCGATT
1046096 GTGAAATTAC
Statistics
Matches: 117, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
53 29 0.25
54 88 0.75
ACGTcount: A:0.29, C:0.24, G:0.07, T:0.39
Consensus pattern (54 bp):
TACCGTTTTACCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAAAAT
Found at i:1046219 original size:29 final size:27
Alignment explanation
Indices: 1046135--1046252 Score: 98
Period size: 27 Copynumber: 4.3 Consensus size: 27
1046125 AGAATTACCA
** *
1046135 AAATACCCCT-AGTTTGTAAAATTATCG
1 AAATACCCCTGA-TTTACAAAATTATAG
*
1046162 AAATACCCCTGATTTACAAAATTACAG
1 AAATACCCCTGATTTACAAAATTATAG
*
1046189 AAATACCCTTGACTTT-CTAAAAATTATAG
1 AAATACCCCTGA-TTTAC--AAAATTATAG
** *
1046218 AAATACCATTGGTTTACAAAATTACT-G
1 AAATACCCCTGATTTACAAAATTA-TAG
1046245 AAATACCC
1 AAATACCC
1046253 TTGGTTTGTA
Statistics
Matches: 76, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
27 48 0.63
28 8 0.11
29 20 0.26
ACGTcount: A:0.42, C:0.19, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATACCCCTGATTTACAAAATTATAG
Found at i:1046256 original size:27 final size:27
Alignment explanation
Indices: 1046152--1046259 Score: 112
Period size: 27 Copynumber: 3.9 Consensus size: 27
1046142 CCTAGTTTGT
* * *
1046152 AAAATTATCGAAATACCCCTGATTTAC
1 AAAATTATAGAAATACCCTTGGTTTAC
* *
1046179 AAAATTACAGAAATACCCTTGACTTT-C
1 AAAATTATAGAAATACCCTTG-GTTTAC
*
1046206 TAAAAATTATAGAAATACCATTGGTTTAC
1 --AAAATTATAGAAATACCCTTGGTTTAC
1046235 AAAATTACT-GAAATACCCTTGGTTT
1 AAAATTA-TAGAAATACCCTTGGTTT
1046260 GTAGATTTAC
Statistics
Matches: 68, Mismatches: 8, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
27 41 0.60
28 7 0.10
29 20 0.29
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (27 bp):
AAAATTATAGAAATACCCTTGGTTTAC
Found at i:1046372 original size:27 final size:27
Alignment explanation
Indices: 1046316--1046377 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
1046306 CCTAATAGGC
*
1046316 AAAAAGACCGTAAAGCCCCTGTAGGTT
1 AAAATGACCGTAAAGCCCCTGTAGGTT
* *
1046343 AAAGTGACCGTAATA-CCCTTGTATGG-T
1 AAAATGACCGTAA-AGCCCCTGTA-GGTT
1046370 AAAATGAC
1 AAAATGAC
1046378 GAATATGCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
27 26 0.90
28 3 0.10
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AAAATGACCGTAAAGCCCCTGTAGGTT
Found at i:1047269 original size:24 final size:24
Alignment explanation
Indices: 1047187--1047269 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
1047177 AGGAAGTGCT
* *
1047187 AAAAGGGCTCTGCCCCAGTTTACC
1 AAAAGGGCTTTGCCCCAGTTTATC
1047211 GAAAAGGGCTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTGCCCCAGTTTATC
* *
1047236 AGAAAGGGCTTTGCCCTAG-TTATT
1 A-AAAGGGCTTTGCCCCAGTTTATC
1047260 AAAAGAGGCT
1 AAAAG-GGCT
1047270 AGGCTTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 4 0.08
24 10 0.19
25 38 0.73
ACGTcount: A:0.28, C:0.23, G:0.24, T:0.25
Consensus pattern (24 bp):
AAAAGGGCTTTGCCCCAGTTTATC
Found at i:1047463 original size:42 final size:42
Alignment explanation
Indices: 1047404--1047495 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
1047394 TAGTCTCCCC
*
1047404 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1047446 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
1047488 AAATGGGC
1 AAATGGGC
1047496 CTAAGGACCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (42 bp):
AAATGGGCTTGCATACATCCATTGACATTACATGTGATATTG
Found at i:1047557 original size:31 final size:31
Alignment explanation
Indices: 1047519--1047633 Score: 178
Period size: 31 Copynumber: 3.7 Consensus size: 31
1047509 CGTTTACAGT
*
1047519 AAAGGCTTCAGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
*
1047550 AAAGGCTTCGGCCCAGTAATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* * *
1047581 AAAGGCTTCGGTCCAGTGATATAATTTATGG
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1047612 AAAGGCTTCGGCCCAGT-ATATG
1 AAAGGCTTCGGCCCAGTGATATG
1047634 TCAAGACTAA
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
30 4 0.05
31 72 0.95
ACGTcount: A:0.30, C:0.17, G:0.24, T:0.29
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:1052168 original size:80 final size:80
Alignment explanation
Indices: 1051201--1052150 Score: 1726
Period size: 80 Copynumber: 11.9 Consensus size: 80
1051191 TTATAGTAAT
* *** * * *
1051201 TCGCACAAATGCCTTTGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG-GCTTA
1 TCGCACAAATGCC-TTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTG
* *
1051264 GCCCGGAATTAGTATC
65 GTCCGGATTTAGTATC
1051280 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051345 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
1051360 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051425 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
1051440 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051505 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
1051520 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051585 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
1051600 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051665 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
1051680 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051745 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
1051760 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051825 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
1051840 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051905 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
1051920 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051985 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
* *
1052000 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1052065 TCCGGATTTAGTATC
66 TCCGGATTTAGTATC
* * * * *
1052080 TCGCACAAATGCCTTCGG-GCTTAGCCCGGAATTAGTATCTCGCACAAATTCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1052144 TCCGGAT
66 TCCGGAT
1052151 ATTGTCACTT
Statistics
Matches: 855, Mismatches: 14, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
78 5 0.01
79 97 0.11
80 753 0.88
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.31
Consensus pattern (80 bp):
TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
TCCGGATTTAGTATC
Found at i:1052168 original size:120 final size:120
Alignment explanation
Indices: 1051201--1052150 Score: 1726
Period size: 120 Copynumber: 7.9 Consensus size: 120
1051191 TTATAGTAAT
* *** * * *
1051201 TCGCACAAATGCCTTTGGGA-CTTAACCCGGATTTAGTAACTCGCACAAATGCCTTCGG-GCTTA
1 TCGCACAAATGCC-TTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTG
* *
1051264 GCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
65 GTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1051320 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051385 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
66 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1051440 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051505 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
66 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1051560 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051625 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
66 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1051680 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051745 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
66 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1051800 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1051865 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
66 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1051920 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
* *
1051985 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
66 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
* *
1052040 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGG-GCTTAG
1 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
* * *
1052104 CCCGGAATTAGTATCTCGCACAAATTCCTTCGGATCTTGGTCCGGAT
66 TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGAT
1052151 ATTGTCACTT
Statistics
Matches: 811, Mismatches: 18, Indels: 4
0.97 0.02 0.00
Matches are distributed among these distances:
118 5 0.01
119 93 0.11
120 713 0.88
ACGTcount: A:0.21, C:0.25, G:0.22, T:0.31
Consensus pattern (120 bp):
TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGG
TCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
Found at i:1052189 original size:40 final size:40
Alignment explanation
Indices: 1051201--1052189 Score: 1434
Period size: 40 Copynumber: 24.8 Consensus size: 40
1051191 TTATAGTAAT
* ** * *
1051201 TCGCACAAATGCCTTTGGGA-CTTAACCCGGATTTAGTAAC
1 TCGCACAAATGCC-TTCGGATCTTGGCCCGGAATTAGTATC
* *
1051241 TCGCACAAATGCCTTCGG-GCTTAGCCCGGAATTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051280 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051320 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051360 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051400 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051440 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051480 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051520 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051560 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051600 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051640 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051680 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051720 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051760 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051800 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051840 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051880 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051920 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1051960 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
1052000 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1052040 TCGCACAAATGCCTTCGGATCTTGGTCCGGATTTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1052080 TCGCACAAATGCCTTCGG-GCTTAGCCCGGAATTAGTATC
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
* *
1052119 TCGCACAAATTCCTTCGGATCTTGGTCCGGATATT-GTCA-C
1 TCGCACAAATGCCTTCGGATCTTGGCCCGGA-ATTAGT-ATC
*
1052159 TTAGCACAAA-GCCTTCGGGA-CTTGGCCCGGA
1 -TCGCACAAATGCCTTC-GGATCTTGGCCCGGA
1052190 CATCATTCAA
Statistics
Matches: 919, Mismatches: 23, Indels: 14
0.96 0.02 0.01
Matches are distributed among these distances:
39 73 0.08
40 831 0.90
41 15 0.02
ACGTcount: A:0.21, C:0.26, G:0.23, T:0.31
Consensus pattern (40 bp):
TCGCACAAATGCCTTCGGATCTTGGCCCGGAATTAGTATC
Found at i:1068743 original size:34 final size:33
Alignment explanation
Indices: 1068699--1068765 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 33
1068689 GTTAAGATTC
*
1068699 CCCTTTGGAAGTAGGAAAGAATGAGTATTAATT
1 CCCTTAGGAAGTAGGAAAGAATGAGTATTAATT
*
1068732 NCCCTTAGGAAGTAGGAAAGAGTGAGTATTAATT
1 -CCCTTAGGAAGTAGGAAAGAATGAGTATTAATT
1068766 TCGTTAGTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.28
Consensus pattern (33 bp):
CCCTTAGGAAGTAGGAAAGAATGAGTATTAATT
Found at i:1073102 original size:42 final size:42
Alignment explanation
Indices: 1073007--1073154 Score: 147
Period size: 43 Copynumber: 3.5 Consensus size: 42
1072997 TAGCTTAGAA
* * * * *
1073007 AGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCTC
1 AGACATGGTCTTACACGAAATCAAATA-CGATGCCAATGTCCC
* * *
1073050 AGACAAGGTCTTCCACGAAATCAAATACGTTGCCAATGTCCC
1 AGACATGGTCTTACACGAAATCAAATACGATGCCAATGTCCC
* *
1073092 AGACATGGTCTTACACGTAAATCATAAGT-CGATGCTAACGTCCC
1 AGACATGGTCTTACACG-AAATCA-AA-TACGATGCCAATGTCCC
*
1073136 -GACGTGGTCTTACACGAAA
1 AGACATGGTCTTACACGAAA
1073155 ACACATATCG
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
42 30 0.34
43 43 0.49
44 14 0.16
45 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (42 bp):
AGACATGGTCTTACACGAAATCAAATACGATGCCAATGTCCC
Found at i:1075642 original size:23 final size:23
Alignment explanation
Indices: 1075615--1075665 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
1075605 CCTCACACGT
* *
1075615 CCGTGTGGAGGCAATGCGCACAC
1 CCGTGTAGAGACAATGCGCACAC
1075638 CCGTGTAGAGACAATGCGCACAC
1 CCGTGTAGAGACAATGCGCACAC
1075661 CCGTG
1 CCGTG
1075666 CGTATTAGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.24, C:0.31, G:0.31, T:0.14
Consensus pattern (23 bp):
CCGTGTAGAGACAATGCGCACAC
Found at i:1077200 original size:43 final size:43
Alignment explanation
Indices: 1077129--1077212 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
1077119 TACATGAATT
* **
1077129 GCATCCATTATGAACTCGGACTTCTCAACGAGCTCAGATGCTC
1 GCATCCATAATGAACTCAAACTTCTCAACGAGCTCAGATGCTC
1077172 GCATCCATAATGAACTCAAACCTT-TCAACGAGCTCAGATGC
1 GCATCCATAATGAACTCAAA-CTTCTCAACGAGCTCAGATGC
1077213 CACATATCTC
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 34 0.92
44 3 0.08
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.24
Consensus pattern (43 bp):
GCATCCATAATGAACTCAAACTTCTCAACGAGCTCAGATGCTC
Found at i:1081242 original size:43 final size:43
Alignment explanation
Indices: 1081085--1081243 Score: 135
Period size: 43 Copynumber: 3.7 Consensus size: 43
1081075 TATGTGTTAT
* * *
1081085 CATGTAAGGCCACGTTTAAGACGTTGGCATCGAT-TTGTGAGTTA
1 CATGTAAGACCACGTCTAGGACGTTGGCATCGATATT-TGA-TTA
* * * * *
1081129 CGTGTAAGACCATGTCTAGGACATTGGCATCG-TATATGATTT
1 CATGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
** * ** *
1081171 TGTATAAGACCTTGTCTGGGACAG-TGGCATCGATATTTGATTA
1 CATGTAAGACCACGTCTAGGAC-GTTGGCATCGATATTTGATTA
*
1081214 CATGTAAGACCACGTCTAGGATGTTGGCAT
1 CATGTAAGACCACGTCTAGGACGTTGGCAT
1081244 TGTACGAGCT
Statistics
Matches: 89, Mismatches: 22, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
42 29 0.33
43 33 0.37
44 27 0.30
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (43 bp):
CATGTAAGACCACGTCTAGGACGTTGGCATCGATATTTGATTA
Found at i:1088543 original size:37 final size:37
Alignment explanation
Indices: 1088485--1088592 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
1088475 TAGCTCGAAT
* *
1088485 AATCCCCACACGTAGTTATCGGGTCTTACCCGGACAA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
1088522 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
*
1088559 AATCTCCATACGTAGTCATCGGGTCTTACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1088593 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAA
Found at i:1088791 original size:48 final size:48
Alignment explanation
Indices: 1088733--1089022 Score: 463
Period size: 48 Copynumber: 6.0 Consensus size: 48
1088723 ATATACACAC
* *
1088733 ATCTCCTACATATTTCACATTAGCCATTCGGCTTTACCAAATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
1088781 ATCTCATACATATTTCACATTAGCCATTCGGATTTACCACATATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
** *
1088829 ATCTCATACATATTTCATGTTAGCCATTCGGCTTTACCACATATACGT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
1088877 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATACATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
1088925 ATCTCATACATATTTCATATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* * *
1088973 ATCTCATACATATTTCACACTAGCCATTCGGCTTTACCACACATATAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1089021 AT
1 AT
1089023 ATTTATCTTG
Statistics
Matches: 221, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 221 1.00
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.36
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:1103391 original size:51 final size:51
Alignment explanation
Indices: 1103331--1103430 Score: 139
Period size: 51 Copynumber: 2.0 Consensus size: 51
1103321 AGATCTGTGG
*
1103331 CATCTGAGCTCGTTGAAAGGTCCGATTTCATAATAGATGTGATT-CATGTAA
1 CATCTGAGCTCGTTGAAAGGTCCGAGTTCATAATAGATGTG-TTACATGTAA
* * * *
1103382 CATCTGAGCTCGTTGAGAGGTTCGAGTTCATTATGGATGTGTTACATGT
1 CATCTGAGCTCGTTGAAAGGTCCGAGTTCATAATAGATGTGTTACATGT
1103431 TATGTGGTAG
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
50 2 0.05
51 41 0.95
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.35
Consensus pattern (51 bp):
CATCTGAGCTCGTTGAAAGGTCCGAGTTCATAATAGATGTGTTACATGTAA
Found at i:1106243 original size:13 final size:14
Alignment explanation
Indices: 1106201--1106245 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
1106191 TAATAATGAT
1106201 TAAAGTATATTATAA
1 TAAAGTA-ATTATAA
1106216 TAATA-TAA-TATAA
1 TAA-AGTAATTATAA
1106229 TAAAGTAATTA-AA
1 TAAAGTAATTATAA
1106242 TAAA
1 TAAA
1106246 ACAAATAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
12 1 0.04
13 17 0.63
14 3 0.11
15 5 0.19
16 1 0.04
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (14 bp):
TAAAGTAATTATAA
Found at i:1106595 original size:9 final size:9
Alignment explanation
Indices: 1106581--1106607 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
1106571 ATAGTAGGGA
1106581 TTAAATTGT
1 TTAAATTGT
1106590 TTAAATTGT
1 TTAAATTGT
1106599 TTAAATTGT
1 TTAAATTGT
1106608 AAAATTGATG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.11, T:0.56
Consensus pattern (9 bp):
TTAAATTGT
Found at i:1108592 original size:17 final size:18
Alignment explanation
Indices: 1108549--1108593 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
1108539 TTGTTTATCA
1108549 TCTTTATTTT-TCACCTT
1 TCTTTATTTTATCACCTT
* *
1108566 T-TTAATTTTATC-CTTT
1 TCTTTATTTTATCACCTT
1108582 TCTTTATTTTAT
1 TCTTTATTTTAT
1108594 TTTCCACGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (18 bp):
TCTTTATTTTATCACCTT
Found at i:1126086 original size:46 final size:46
Alignment explanation
Indices: 1126033--1126169 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
1126023 TATATATACA
* * * *
1126033 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
1126079 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
1126125 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
1126170 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:1126204 original size:47 final size:47
Alignment explanation
Indices: 1126143--1126384 Score: 331
Period size: 47 Copynumber: 5.1 Consensus size: 47
1126133 ACACATTTCG
* *
1126143 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
1126190 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* **
1126237 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
*
1126284 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C--ATATATACATGTTCACATTCATCA
** * **
1126335 CATTTTCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
1126382 CAT
1 CAT
1126385 AAAATCCTAA
Statistics
Matches: 175, Mismatches: 16, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
47 134 0.77
49 2 0.01
51 39 0.22
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:1126271 original size:94 final size:96
Alignment explanation
Indices: 1126143--1126384 Score: 335
Period size: 98 Copynumber: 2.5 Consensus size: 96
1126133 ACACATTTCG
*
1126143 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
* * *
1126208 AT-CTC-ATATATGCATGTTCACATTCATCA
66 ATACGCAATATATACAGGTTCACATTCATCA
* * **
1126237 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
1126302 ATCACGCATATATATACAGGTTCACATTCATCA
66 AT-ACGCA-ATATATACAGGTTCACATTCATCA
** * **
1126335 CATTTTCCATTCGGCCTTATCTCATATATACACATTCACATTCATCACAT
1 CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACAT
1126385 AAAATCCTAA
Statistics
Matches: 128, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
94 62 0.48
96 2 0.02
98 64 0.50
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.33
Consensus pattern (96 bp):
CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATACGCAATATATACAGGTTCACATTCATCA
Found at i:1128606 original size:67 final size:67
Alignment explanation
Indices: 1128513--1128644 Score: 255
Period size: 67 Copynumber: 2.0 Consensus size: 67
1128503 GGCTTCTTCT
1128513 TCTTTTTTTTCTTTCACTAGTTACGGCAATGGGGAAAAGAAAGATCAACATACCTTGTTTCTATC
1 TCTTTTTTTTCTTTCACTAGTTACGGCAATGGGGAAAAGAAAGATCAACATACCTTGTTTCTATC
1128578 AC
66 AC
*
1128580 TCTTTTTTTTCTTTCACTAGTTACGGCAATGGGGAAAAGAAAGATGAACATACCTTGTTTCTATC
1 TCTTTTTTTTCTTTCACTAGTTACGGCAATGGGGAAAAGAAAGATCAACATACCTTGTTTCTATC
1128645 CTTTCCTTCT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (67 bp):
TCTTTTTTTTCTTTCACTAGTTACGGCAATGGGGAAAAGAAAGATCAACATACCTTGTTTCTATC
AC
Found at i:1136756 original size:15 final size:15
Alignment explanation
Indices: 1136736--1136765 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1136726 TTCTTGAAAG
1136736 GTATCAACTAGTGAA
1 GTATCAACTAGTGAA
*
1136751 GTATCAATTAGTGAA
1 GTATCAACTAGTGAA
1136766 TTGGAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (15 bp):
GTATCAACTAGTGAA
Found at i:1137016 original size:20 final size:20
Alignment explanation
Indices: 1136991--1137034 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1136981 TCTAATAAAT
*
1136991 AAAGTAATT-CGTAAAATATG
1 AAAGT-ATTACGTAAAACATG
*
1137011 AAAGTATTACTTAAAACATG
1 AAAGTATTACGTAAAACATG
1137031 AAAG
1 AAAG
1137035 AGTTTTAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 3 0.14
20 18 0.86
ACGTcount: A:0.52, C:0.07, G:0.14, T:0.27
Consensus pattern (20 bp):
AAAGTATTACGTAAAACATG
Found at i:1137077 original size:56 final size:55
Alignment explanation
Indices: 1137008--1137151 Score: 155
Period size: 56 Copynumber: 2.6 Consensus size: 55
1136998 TTCGTAAAAT
* *
1137008 ATGAAAGTATTACTTAAAACATGAAAGAGTTTTAAGAAATTAA-TAATCCATAATAC
1 ATGAAAG-ATTACTTAAAACATGAAAGAG-TTAAAGAAAGTAAGTAATCCATAATAC
* * * * *
1137064 ATGAAAGAGTTACTTCAAATATGAAAGTGTTAAAGAAAGTAAGTAATTCGTAATAC
1 ATGAAAGA-TTACTTAAAACATGAAAGAGTTAAAGAAAGTAAGTAATCCATAATAC
* * *
1137120 ATGTAAGAATTACTTAAAACTTGAAAGTGTTA
1 ATGAAAG-ATTACTTAAAACATGAAAGAGTTA
1137152 CTTAAAACAT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
55 12 0.16
56 61 0.82
57 1 0.01
ACGTcount: A:0.47, C:0.08, G:0.15, T:0.31
Consensus pattern (55 bp):
ATGAAAGATTACTTAAAACATGAAAGAGTTAAAGAAAGTAAGTAATCCATAATAC
Found at i:1137563 original size:20 final size:21
Alignment explanation
Indices: 1137527--1137579 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
1137517 AAGTTATTTC
1137527 AAAAATAATAAATAAA-TTCTT
1 AAAAATAA-AAATAAATTTCTT
1137548 AAAACATAAAAA-AAATTTCTT
1 AAAA-ATAAAAATAAATTTCTT
1137569 AAAATATAAAA
1 AAAA-ATAAAA
1137580 GATTTCTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 3 0.10
21 22 0.76
22 4 0.14
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAAATAAAAATAAATTTCTT
Found at i:1137584 original size:19 final size:19
Alignment explanation
Indices: 1137528--1137590 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 19
1137518 AGTTATTTCA
1137528 AAAATAATAAATAAA-TTCTT
1 AAAATAA-AAA-AAATTTCTT
1137548 AAAACATAAAAAAAATTTCTT
1 -AAA-ATAAAAAAAATTTCTT
* *
1137569 AAAATATAAAAGATTTC-T
1 AAAATAAAAAAAATTTCTT
1137587 AAAA
1 AAAA
1137591 CAAATTAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.13
19 12 0.32
20 6 0.16
21 11 0.29
22 4 0.11
ACGTcount: A:0.62, C:0.06, G:0.02, T:0.30
Consensus pattern (19 bp):
AAAATAAAAAAAATTTCTT
Found at i:1140933 original size:206 final size:206
Alignment explanation
Indices: 1140578--1140994 Score: 793
Period size: 206 Copynumber: 2.0 Consensus size: 206
1140568 GTGTTTTATT
1140578 TTAGGGATGTTTCCATATTTTGACACCAAAAAAAAAAAAAATCAAAGCAAGTCATGTGCAGGAGC
1 TTAGGGATGTTTCCATATTTTGACACCAAAAAAAAAAAAAATCAAAGCAAGTCA-GTGCAGGAGC
1140643 TGCACGCATTGGTGTGGTGACCATATGCCTCCCTCAGTTTTATCCGTATTTGCAAATGGTGAAAA
65 TGCACGCATTGGTGTGGTGACCATATGCCTCCCTCAGTTTTATCCGTATTTGCAAATGGTGAAAA
1140708 AAGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTAA
130 AAGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTAA
1140773 CTTTGTAATTAA
195 CTTTGTAATTAA
1140785 TTAGGGATGTTTCCATATTTTGACACCAAAAAAAAAAAAAAAATCAAAGCAAGTCA-TG-AGGAG
1 TTAGGGATGTTTCCATATTTTGACACC--AAAAAAAAAAAAAATCAAAGCAAGTCAGTGCAGGAG
1140848 CTGCACGCATTGGTGTGGTGACCATATGCCTCCCTCAGTTTTATCCGTATTTGCAAATGGTGAAA
64 CTGCACGCATTGGTGTGGTGACCATATGCCTCCCTCAGTTTTATCCGTATTTGCAAATGGTGAAA
1140913 AAAGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTA
129 AAAGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTA
1140978 ACTTTGTAATTAA
194 ACTTTGTAATTAA
1140991 TTAG
1 TTAG
1140995 AAACTTAAAT
Statistics
Matches: 208, Mismatches: 0, Indels: 5
0.98 0.00 0.02
Matches are distributed among these distances:
206 152 0.73
207 29 0.14
209 27 0.13
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.28
Consensus pattern (206 bp):
TTAGGGATGTTTCCATATTTTGACACCAAAAAAAAAAAAAATCAAAGCAAGTCAGTGCAGGAGCT
GCACGCATTGGTGTGGTGACCATATGCCTCCCTCAGTTTTATCCGTATTTGCAAATGGTGAAAAA
AGAAACAAAGAAAATGAGACCTACATTTTAATTGAACAAGATTAAGATAAAACTGACCTTGTAAC
TTTGTAATTAA
Found at i:1143214 original size:21 final size:21
Alignment explanation
Indices: 1143190--1143232 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
1143180 AAAGTAACTT
1143190 CACAATCTCAAATGAACAAAC
1 CACAATCTCAAATGAACAAAC
1143211 CACAATCTCAAATGAACAAAC
1 CACAATCTCAAATGAACAAAC
1143232 C
1 C
1143233 TTGACAGGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.51, C:0.30, G:0.05, T:0.14
Consensus pattern (21 bp):
CACAATCTCAAATGAACAAAC
Found at i:1146094 original size:274 final size:272
Alignment explanation
Indices: 1145605--1146109 Score: 707
Period size: 274 Copynumber: 1.8 Consensus size: 272
1145595 AGATGTAAGG
* * * *
1145605 TTTCATCAATGATAACCTTTGTTTGTACCCTTTGATGCTAAATACAAAATATTAGCCATCTCATC
1 TTTCATCAATAATAACCTTTGATAGTACCATTTGATGCTAAATACAAAATATTAGCCATCTCATC
* **
1145670 TCTTTAAGGTACAAAATAATGCCTGCAAAACTAGCCATGCTAAATTCTTAAAGGTGGAATTAAAA
66 TCTTTAAGGCACAAAATAATGCCTGCAAAAC-A-CCATGCTAAATTCTTAAAGGCAGAATTAAAA
*
1145735 GATGAGTCAGCAGCTAAATCAAAGGTCATACAACTTTTGTACCTGAAGTCCCTAATAAAAGTCAC
129 GATGAGTCAGCAGCTAAATCAAAGGTCATACAACTCTTGTACCTGAAGTCCCTAATAAAAGTCAC
* * *
1145800 CAATTTGTTTGCAGCACTACCAAAATTCATGCTCTAAATACTACATGATATGTTATCTCAGATGT
194 CAATTTGTTTGCAACACTACCAAAATACAAGCTCTAAATACTACATGATATGTTATCTCAGATGT
1145865 CTGGAAGTGAATGA
259 CTGGAAGTGAATGA
*
1145879 TTTCATCAATAATAACCTTTGATAGTACCATTTGATGCTAAATAC-TAATATTAGCCATCTCATC
1 TTTCATCAATAATAACCTTTGATAGTACCATTTGATGCTAAATACAAAATATTAGCCATCTCATC
* * * *
1145943 TCTTTAATGCACAAACTAATTCCTGC-AAAC-CCGTGCTCAAAATTCTTAAAGGCAG-ATTAAAA
66 TCTTTAAGGCACAAAATAATGCCTGCAAAACACCATGCT--AAATTCTTAAAGGCAGAATT-AAA
* * *
1146005 AGATGA-TCCAGCAGCTAAATCGAAGGTCATACAAC-CTTGTACCCTGAGCTGTCCCTACTAAAA
128 AGATGAGT-CAGCAGCTAAATCAAAGGTCATACAACTCTTGTA-CCTGA--AGTCCCTAATAAAA
1146068 TGTCACCAATTTGTTTGCAACACTACCAAAATACAAGCTCTA
189 -GTCACCAATTTGTTTGCAACACTACCAAAATACAAGCTCTA
1146110 GATGCAACAT
Statistics
Matches: 204, Mismatches: 19, Indels: 16
0.85 0.08 0.07
Matches are distributed among these distances:
269 6 0.03
270 9 0.04
271 54 0.26
272 4 0.02
273 52 0.25
274 79 0.39
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.30
Consensus pattern (272 bp):
TTTCATCAATAATAACCTTTGATAGTACCATTTGATGCTAAATACAAAATATTAGCCATCTCATC
TCTTTAAGGCACAAAATAATGCCTGCAAAACACCATGCTAAATTCTTAAAGGCAGAATTAAAAGA
TGAGTCAGCAGCTAAATCAAAGGTCATACAACTCTTGTACCTGAAGTCCCTAATAAAAGTCACCA
ATTTGTTTGCAACACTACCAAAATACAAGCTCTAAATACTACATGATATGTTATCTCAGATGTCT
GGAAGTGAATGA
Found at i:1149873 original size:17 final size:17
Alignment explanation
Indices: 1149851--1149884 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
1149841 ATGTCTCTAT
1149851 CTAAATTGAATTTTTAG
1 CTAAATTGAATTTTTAG
1149868 CTAAATTGAATTTTTAG
1 CTAAATTGAATTTTTAG
1149885 TGAGGAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (17 bp):
CTAAATTGAATTTTTAG
Found at i:1150457 original size:54 final size:54
Alignment explanation
Indices: 1150375--1150484 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
1150365 TAATCAGAGA
*
1150375 AAGCATGATAATGCTATGATCATGATTGTGTAGTATTAGCAATGACAAAATGTT
1 AAGCATGATAATGCTATGATCATGATTGTGTAATATTAGCAATGACAAAATGTT
1150429 AAGCATGATAATGCTATGATCATGATTGTGTAATATTAGCAATGACAAAATGTT
1 AAGCATGATAATGCTATGATCATGATTGTGTAATATTAGCAATGACAAAATGTT
1150483 AA
1 AA
1150485 ACGTAAAACA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.39, C:0.09, G:0.19, T:0.33
Consensus pattern (54 bp):
AAGCATGATAATGCTATGATCATGATTGTGTAATATTAGCAATGACAAAATGTT
Found at i:1152453 original size:94 final size:94
Alignment explanation
Indices: 1152304--1152895 Score: 760
Period size: 94 Copynumber: 6.3 Consensus size: 94
1152294 TCAATCCATT
* * * *
1152304 CCACTGCAATTTTAAGGATATAGG-TTTGTAGCCTCATCTTGCTCCACTGCAACTTCAGGGAGAT
1 CCACTGCAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
* * * * *
1152368 AAAATTCGCTATGGTAGCTTTAATCCGCC
66 AAGATTCACTATTGTAGCTTCAATCCGAC
* * * * *
1152397 CCACTGCAACTTCAAGGGCATAGGATTTGTAGTTTCATCTTGCTCCACTACAACTTCAGGGAGAT
1 CCACTGCAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
* *
1152462 AAGATTCACTATCGTAACTTCAATCCGAC
66 AAGATTCACTATTGTAGCTTCAATCCGAC
* * * * *
1152491 CCACTACAAATTTAGGGGTATAGGATTTGTAGCTTCATCTTACTCCATTGCAACTTTAGGGAGAT
1 CCACTGCAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
1152556 AAGATTCACTATTGTAGCTTCAATCCGAC
66 AAGATTCACTATTGTAGCTTCAATCCGAC
* * *
1152585 CCACTAG-AACTTT-AGTGGTATAGGATTTGTAGCTTCATTTTGCTCCATTGCAACTTTAAGGAG
1 CCACT-GCAACTTTAAG-GGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAG
* * *
1152648 ATAACATTCACTATCGTAGCTTCAATCTGAC
64 ATAAGATTCACTATTGTAGCTTCAATCCGAC
* * *
1152679 CCACTACAACTTTAGGGGTATAGGATTTATAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
1 CCACTGCAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
* *
1152744 AAGATTCATTATTGTAGCTTCAATCTGAC
66 AAGATTCACTATTGTAGCTTCAATCCGAC
* * * *
1152773 CCACTACAACTTT-AGTGGTATAGGATTTGTAGCTTTATCTTGTTCCCCTGCAACTTTAGGGAGA
1 CCACTGCAACTTTAAG-GGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGA
* * *
1152837 TAAGATTCGCTATTGTAGCTTTAATTCGAC
65 TAAGATTCACTATTGTAGCTTCAATCCGAC
* *
1152867 CAACTGCAACTTTAGGGGTATAGGATTTG
1 CCACTGCAACTTTAAGGGTATAGGATTTG
1152896 GGGTTTCACT
Statistics
Matches: 436, Mismatches: 56, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
93 22 0.05
94 412 0.94
95 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (94 bp):
CCACTGCAACTTTAAGGGTATAGGATTTGTAGCTTCATCTTGCTCCACTGCAACTTTAGGGAGAT
AAGATTCACTATTGTAGCTTCAATCCGAC
Found at i:1152551 original size:44 final size:44
Alignment explanation
Indices: 1152397--1152833 Score: 190
Period size: 44 Copynumber: 9.4 Consensus size: 44
1152387 TTAATCCGCC
* * * * *
1152397 CCACTGCAACTTCAAGGGCATAGGATTTGTAGTTTCATCTTGCT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
* * * * **
1152441 CCACTACAACTTCAGGGAG-ATAAGATTCACTATCGTAACTTCAATCCGAC-
1 CCACTGCAACTTTAGGG-GTATAGGA-T---T-T-GTAGCTTC-ATCTTACT
* *
1152491 CCACTACAAATTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
* * **
1152535 CCATTGCAACTTTAGGGAG-ATAAGATTCACTATTGTAGCTTCAATCCGAC-
1 CCACTGCAACTTTAGGG-GTAT-AG---GA-T-TTGTAGCTTC-ATCTTACT
* * *
1152585 CCACTAG-AACTTTAGTGGTATAGGATTTGTAGCTTCATTTTGCT
1 CCACT-GCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
* * ** *
1152629 CCATTGCAACTTTAAGGAG-ATAACATTCACTATCGTAGCTTCAATCTGAC-
1 CCACTGCAACTTT-AGGGGTATAGGA-T---T-T-GTAGCTTC-ATCTTACT
* * *
1152679 CCACTACAACTTTAGGGGTATAGGATTTATAGCTTCATCTTGCT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
* *
1152723 CCACTGCAACTTTAGGGAG-ATAAGATTCATTATTGTAGCTTCAATCTGAC-
1 CCACTGCAACTTTAGGG-GTAT-AG---GA-T-TTGTAGCTTC-ATCTTACT
* * * **
1152773 CCACTACAACTTTAGTGGTATAGGATTTGTAGCTTTATCTTGTT
1 CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
*
1152817 CCCCTGCAACTTTAGGG
1 CCACTGCAACTTTAGGG
1152834 AGATAAGATT
Statistics
Matches: 293, Mismatches: 58, Indels: 84
0.67 0.13 0.19
Matches are distributed among these distances:
43 18 0.06
44 115 0.39
45 16 0.05
46 4 0.01
48 4 0.01
49 17 0.06
50 100 0.34
51 19 0.06
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (44 bp):
CCACTGCAACTTTAGGGGTATAGGATTTGTAGCTTCATCTTACT
Found at i:1152596 original size:50 final size:49
Alignment explanation
Indices: 1152441--1152883 Score: 246
Period size: 50 Copynumber: 9.3 Consensus size: 49
1152431 TCATCTTGCT
* * * *
1152441 CCACTACAACTTCAGGGAGATAAGATTCACTATCGTAACTTCAATCCGAC
1 CCACTACAACTTTAGGGAGATAAGATTCA-TATTGTAGCTTCAATCTGAC
* * *
1152491 CCACTACAAATTTAGGG-G-TATAG---GAT-TTGTAGCTTC-ATCTTAC
1 CCACTACAACTTTAGGGAGATA-AGATTCATATTGTAGCTTCAATCTGAC
* * *
1152534 TCCATTGCAACTTTAGGGAGATAAGATTCACTATTGTAGCTTCAATCCGAC
1 -CCACTACAACTTTAGGGAGATAAGATTCA-TATTGTAGCTTCAATCTGAC
* * * * *
1152585 CCACTAGAACTTTAGTG-G-TATAG---GAT-TTGTAGCTTCATTTTG-C
1 CCACTACAACTTTAGGGAGATA-AGATTCATATTGTAGCTTCAATCTGAC
* * * * *
1152628 TCCATTGCAACTTTAAGGAGATAACATTCACTATCGTAGCTTCAATCTGAC
1 -CCACTACAACTTTAGGGAGATAAGATTCA-TATTGTAGCTTCAATCTGAC
*
1152679 CCACTACAACTTTAGGG-GTATAGGATT--TA---TAGCTTC-ATCTTG-C
1 CCACTACAACTTTAGGGAG-ATAAGATTCATATTGTAGCTTCAATC-TGAC
*
1152722 TCCACTGCAACTTTAGGGAGATAAGATTCATTATTGTAGCTTCAATCTGAC
1 -CCACTACAACTTTAGGGAGATAAGATTCA-TATTGTAGCTTCAATCTGAC
* * * *
1152773 CCACTACAACTTTAGTG-G-TATAG---GAT-TTGTAGCTT-TATCTTGTTC
1 CCACTACAACTTTAGGGAGATA-AGATTCATATTGTAGCTTCAATC-TG-AC
* * *
1152818 CC-CTGCAACTTTAGGGAGATAAGATTCGCTATTGTAGCTTTAAT-TCGAC
1 CCACTACAACTTTAGGGAGATAAGATTC-ATATTGTAGCTTCAATCT-GAC
* *
1152867 CAACTGCAACTTTAGGG
1 CCACTACAACTTTAGGG
1152884 GTATAGGATT
Statistics
Matches: 298, Mismatches: 50, Indels: 90
0.68 0.11 0.21
Matches are distributed among these distances:
43 13 0.04
44 102 0.34
45 15 0.05
46 9 0.03
47 4 0.01
48 8 0.03
49 16 0.05
50 119 0.40
51 12 0.04
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (49 bp):
CCACTACAACTTTAGGGAGATAAGATTCATATTGTAGCTTCAATCTGAC
Found at i:1158860 original size:40 final size:40
Alignment explanation
Indices: 1158802--1158964 Score: 240
Period size: 40 Copynumber: 4.1 Consensus size: 40
1158792 TCTTCAGGAT
1158802 TTAG-CCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
*
1158841 TTAGCCCGGATATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
* * *
1158881 TTAGCCCGGATATAATC-ACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATATAA-CAACTCGCACAAATGCCTTCGGGTC
* * *
1158921 ATAGCCCGGATATAACAACTCGCACGAATGCCTTCGGATC
1 TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
1158961 TTAG
1 TTAG
1158965 TTCGGTTATC
Statistics
Matches: 109, Mismatches: 12, Indels: 5
0.87 0.10 0.04
Matches are distributed among these distances:
39 5 0.05
40 103 0.94
41 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATATAACAACTCGCACAAATGCCTTCGGGTC
Found at i:1164861 original size:57 final size:57
Alignment explanation
Indices: 1164782--1164895 Score: 183
Period size: 57 Copynumber: 2.0 Consensus size: 57
1164772 TCAACTTCTC
* *
1164782 GATTCGGAGTTAATCCAGGAAGCTCTTCCGGAAAAACATCCCAAAATTCCCTAACAG
1 GATTCGGAGGTAATCCAGGAAGCTCTTCCGAAAAAACATCCCAAAATTCCCTAACAG
* **
1164839 GATTTGGAGGTAATCCAGGAAGCTCTTCCGAAAAAACATCCCGGAATTCCCTAACAG
1 GATTCGGAGGTAATCCAGGAAGCTCTTCCGAAAAAACATCCCAAAATTCCCTAACAG
1164896 TTCTGATGGT
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 52 1.00
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.21
Consensus pattern (57 bp):
GATTCGGAGGTAATCCAGGAAGCTCTTCCGAAAAAACATCCCAAAATTCCCTAACAG
Found at i:1177111 original size:39 final size:38
Alignment explanation
Indices: 1177026--1177299 Score: 305
Period size: 39 Copynumber: 7.0 Consensus size: 38
1177016 AAATCCAATC
* * * *
1177026 ACCACCACAAAGCATGCGGGACTTTAAGCCTGGATATAAT
1 ACCAGCACAAAGCCTTCGGGAC-TT-AGCCCGGATATAAT
*
1177066 ACCAGCACAAAGCCTGCGGGACTTTAGCCCGGATATAAT
1 ACCAGCACAAAGCCTTCGGGAC-TTAGCCCGGATATAAT
* *
1177105 ACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAAC
1 ACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAAT
* *
1177144 ACCAGCACAAATGCCTTCGGGGCTTAGCCCAGATATAAT
1 ACCAGCACAAA-GCCTTCGGGACTTAGCCCGGATATAAT
* * ** *
1177183 ACTAGTACGAATTCTTTCGGGACTTAGCCCGGATATAAT
1 ACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAAT
** *
1177222 ACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAAC
1 ACCAGCAC-AAAGCCTTCGGGACTTAGCCCGGATATAAT
* *
1177261 ACCAGCACAAATGCCTTCGGGACTTAACCCAGATATAAT
1 ACCAGCACAAA-GCCTTCGGGACTTAGCCCGGATATAAT
1177300 TCTCCATTAT
Statistics
Matches: 204, Mismatches: 26, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
38 4 0.02
39 163 0.80
40 37 0.18
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.21
Consensus pattern (38 bp):
ACCAGCACAAAGCCTTCGGGACTTAGCCCGGATATAAT
Found at i:1177193 original size:78 final size:78
Alignment explanation
Indices: 1177042--1177299 Score: 347
Period size: 78 Copynumber: 3.3 Consensus size: 78
1177032 ACAAAGCATG
* *
1177042 CGGGACTTTAAGCCTGGATATAATACCAGCACAAA-GCCTGCGGGACTTTAGCCCGGATATAATA
1 CGGGAC-TT-AGCCCGGATATAATACCAGCACAAATGCCTTCGGGAC-TTAGCCCGGATATAATA
1177106 CCAGCACGAATGCCTT
63 CCAGCACGAATGCCTT
* * * *
1177122 CGGGACTTAGCCCGGATATAACACCAGCACAAATGCCTTCGGGGCTTAGCCCAGATATAATACTA
1 CGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
* * *
1177187 GTACGAATTCTTT
66 GCACGAATGCCTT
* * *
1177200 CGGGACTTAGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAACACCA
1 CGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
*
1177265 GCACAAATGCCTT
66 GCACGAATGCCTT
* *
1177278 CGGGACTTAACCCAGATATAAT
1 CGGGACTTAGCCCGGATATAAT
1177300 TCTCCATTAT
Statistics
Matches: 155, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 138 0.89
79 11 0.07
80 6 0.04
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (78 bp):
CGGGACTTAGCCCGGATATAATACCAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATACCA
GCACGAATGCCTT
Found at i:1177232 original size:117 final size:118
Alignment explanation
Indices: 1177082--1177299 Score: 402
Period size: 117 Copynumber: 1.9 Consensus size: 118
1177072 ACAAAGCCTG
1177082 CGGGACTTTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
1 CGGGACTTTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
* *
1177147 AGCACAAATGCCTTCGGGGCTTAGCCCAGATATAATACTAGTACGAATTCTTT
66 AGCACAAATGCCTTCGGGACTTAACCCAGATATAATACTAGTACGAATTCTTT
*
1177200 CGGGAC-TTAGCCCGGATATAATACCAGCACGAATTCCTTCGGGACTTAGCCCGGATATAACACC
1 CGGGACTTTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
1177264 AGCACAAATGCCTTCGGGACTTAACCCAGATATAAT
66 AGCACAAATGCCTTCGGGACTTAACCCAGATATAAT
1177300 TCTCCATTAT
Statistics
Matches: 97, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
117 91 0.94
118 6 0.06
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (118 bp):
CGGGACTTTAGCCCGGATATAATACCAGCACGAATGCCTTCGGGACTTAGCCCGGATATAACACC
AGCACAAATGCCTTCGGGACTTAACCCAGATATAATACTAGTACGAATTCTTT
Found at i:1182801 original size:47 final size:47
Alignment explanation
Indices: 1182748--1183158 Score: 732
Period size: 47 Copynumber: 8.7 Consensus size: 47
1182738 TTAGGATTCT
1182748 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1182795 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1182842 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1182889 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
1182936 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1182983 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
1183030 ATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
1183077 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
1183124 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
1183159 TCCCGAAGGG
Statistics
Matches: 350, Mismatches: 14, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 350 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:1183333 original size:37 final size:37
Alignment explanation
Indices: 1183277--1183355 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
1183267 CCGAGCTCTA
* * *
1183277 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
1183314 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
1183351 AAGAC
1 AAGAC
1183356 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Done.