Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 32 of 186
Found at i:9569875 original size:22 final size:22
Alignment explanation
Indices: 9569844--9569906 Score: 101
Period size: 22 Copynumber: 2.9 Consensus size: 22
9569834 AAAACAAGTT
*
9569844 TTAAGAGGATAGGGGTTAGGCG
1 TTAAGGGGATAGGGGTTAGGCG
*
9569866 TTAAGGGGATAAGGGTTAGGCG
1 TTAAGGGGATAGGGGTTAGGCG
9569888 TTAA-GGGATAGGGGTTAGG
1 TTAAGGGGATAGGGGTTAGG
9569907 GGTTTATGAT
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
21 14 0.37
22 24 0.63
ACGTcount: A:0.27, C:0.03, G:0.46, T:0.24
Consensus pattern (22 bp):
TTAAGGGGATAGGGGTTAGGCG
Found at i:9569906 original size:7 final size:7
Alignment explanation
Indices: 9569853--9569910 Score: 53
Period size: 7 Copynumber: 8.1 Consensus size: 7
9569843 TTTAAGAGGA
9569853 TAGGGGT
1 TAGGGGT
*
9569860 TAGGCGT
1 TAGGGGT
*
9569867 TAAGGGGA
1 T-AGGGGT
*
9569875 TAAGGGT
1 TAGGGGT
*
9569882 TAGGCGT
1 TAGGGGT
* *
9569889 TAAGGGA
1 TAGGGGT
9569896 TAGGGGT
1 TAGGGGT
9569903 TAGGGGT
1 TAGGGGT
9569910 T
1 T
9569911 TATGATTTAT
Statistics
Matches: 38, Mismatches: 12, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
7 33 0.87
8 5 0.13
ACGTcount: A:0.22, C:0.03, G:0.48, T:0.26
Consensus pattern (7 bp):
TAGGGGT
Found at i:9569955 original size:14 final size:14
Alignment explanation
Indices: 9569936--9569964 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
9569926 AATATTTTAA
9569936 GGTTTATGGATTAT
1 GGTTTATGGATTAT
9569950 GGTTTATGGATTAT
1 GGTTTATGGATTAT
9569964 G
1 G
9569965 TGTTAGGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:9569990 original size:21 final size:21
Alignment explanation
Indices: 9569931--9570048 Score: 78
Period size: 21 Copynumber: 5.5 Consensus size: 21
9569921 GAGTTAATAT
* *
9569931 TTTAAGGTTTATGGATTATGG
1 TTTAAGGTTTATGGGTTAGGG
* * *
9569952 TTTATGGATTATGTGTTAGGG
1 TTTAAGGTTTATGGGTTAGGG
* *
9569973 TTTAAGGTTTAAGGGTTATGTG
1 TTTAAGGTTTATGGGTTA-GGG
* *
9569995 TTAAAGGTTTA-GGTTTTAAGGG
1 TTTAAGGTTTATGG-GTT-AGGG
**
9570017 -TTAAGGGATATGGGTTATGGG
1 TTTAAGGTTTATGGGTTA-GGG
*
9570038 TTTAGGGTTTA
1 TTTAAGGTTTA
9570049 GAATTTAATA
Statistics
Matches: 71, Mismatches: 20, Indels: 11
0.70 0.20 0.11
Matches are distributed among these distances:
20 1 0.01
21 44 0.62
22 25 0.35
23 1 0.01
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (21 bp):
TTTAAGGTTTATGGGTTAGGG
Found at i:9569991 original size:28 final size:28
Alignment explanation
Indices: 9569950--9570019 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
9569940 TATGGATTAT
* * *
9569950 GGTTTATGGATTATGTGTT-AGGGTTTAA
1 GGTTTAAGGGTTATGTGTTAAAGGTTT-A
9569978 GGTTTAAGGGTTATGTGTTAAAGGTTTA
1 GGTTTAAGGGTTATGTGTTAAAGGTTTA
9570006 GGTTTTAAGGGTTA
1 GG-TTTAAGGGTTA
9570020 AGGGATATGG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 20 0.54
29 17 0.46
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (28 bp):
GGTTTAAGGGTTATGTGTTAAAGGTTTA
Found at i:9570013 original size:36 final size:36
Alignment explanation
Indices: 9569967--9570048 Score: 110
Period size: 36 Copynumber: 2.3 Consensus size: 36
9569957 GGATTATGTG
* * *
9569967 TTAGGGTTTAAGGTTTAAGGGTTATGTGTTAAAGGT
1 TTAGGGTTTAAGGGTTAAGGGATATGGGTTAAAGGT
* **
9570003 TTAGGTTTTAAGGGTTAAGGGATATGGGTTATGGGT
1 TTAGGGTTTAAGGGTTAAGGGATATGGGTTAAAGGT
9570039 TTAGGGTTTA
1 TTAGGGTTTA
9570049 GAATTTAATA
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.41
Consensus pattern (36 bp):
TTAGGGTTTAAGGGTTAAGGGATATGGGTTAAAGGT
Found at i:9570442 original size:67 final size:67
Alignment explanation
Indices: 9570283--9570625 Score: 544
Period size: 67 Copynumber: 5.0 Consensus size: 67
9570273 AATTATAACA
* * *
9570283 AATAAAAATAAATATGAAAATTAAGAGATTAGTGGCG-TTTTTAAAAAAACACCACAAAAAACAC
1 AATAAAAATAAATATGAAAATTAAGAGATTAGTGGTGTTTTTTTAAAAAACGCCAC-AAAAACAC
9570347 TATTAT
65 ---TAT
* **
9570353 AACAAATAAAAATAAATATGAAAATTAAAAGATTAGTGGCATTTTTTTAAAAAACGCCACAAAAA
1 ----AATAAAAATAAATATGAAAATTAAGAGATTAGTGGTGTTTTTTTAAAAAACGCCACAAAAA
9570418 CACTAT
62 CACTAT
9570424 AATAAAAATAAATATGAAAATTAAGAGATTAGTGGTGTTTTTTTAAAAAACGCCACAAAAACACT
1 AATAAAAATAAATATGAAAATTAAGAGATTAGTGGTGTTTTTTTAAAAAACGCCACAAAAACACT
9570489 AT
66 AT
9570491 AATAAAAATAAATATGAAAATTAAGAGATTAGTGGTGTTTTTTTAAAAAACGCCACAAAAACACT
1 AATAAAAATAAATATGAAAATTAAGAGATTAGTGGTGTTTTTTTAAAAAACGCCACAAAAACACT
9570556 AT
66 AT
9570558 AATAAAAATAAATATGAAAATTAAGAGATTAGTGGTGTTTTTTTAAAAAACGCCACAAAAAACAC
1 AATAAAAATAAATATGAAAATTAAGAGATTAGTGGTGTTTTTTTAAAAAACGCCAC-AAAAACAC
9570623 TAT
65 TAT
9570626 GAAAACGACA
Statistics
Matches: 260, Mismatches: 7, Indels: 10
0.94 0.03 0.04
Matches are distributed among these distances:
67 187 0.72
68 11 0.04
71 3 0.01
74 43 0.17
75 16 0.06
ACGTcount: A:0.52, C:0.10, G:0.11, T:0.27
Consensus pattern (67 bp):
AATAAAAATAAATATGAAAATTAAGAGATTAGTGGTGTTTTTTTAAAAAACGCCACAAAAACACT
AT
Found at i:9570778 original size:18 final size:18
Alignment explanation
Indices: 9570755--9570798 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
9570745 CCCAAAATTG
*
9570755 ATTTCCCC-AATTCTCTAC
1 ATTTCCCCTAA-TCTCTAA
9570773 ATTTCCCCTAATCTCTAA
1 ATTTCCCCTAATCTCTAA
9570791 ATTTCCCC
1 ATTTCCCC
9570799 CAAAATTCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 22 0.92
19 2 0.08
ACGTcount: A:0.23, C:0.39, G:0.00, T:0.39
Consensus pattern (18 bp):
ATTTCCCCTAATCTCTAA
Found at i:9575027 original size:17 final size:18
Alignment explanation
Indices: 9575005--9575038 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
9574995 TACATGTGGG
9575005 GGAATATGGAG-TCAACT
1 GGAATATGGAGTTCAACT
9575022 GGAATATGGAGTTCAAC
1 GGAATATGGAGTTCAAC
9575039 ATTTTGGCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.35, C:0.12, G:0.29, T:0.24
Consensus pattern (18 bp):
GGAATATGGAGTTCAACT
Found at i:9575454 original size:236 final size:236
Alignment explanation
Indices: 9575041--9575513 Score: 946
Period size: 236 Copynumber: 2.0 Consensus size: 236
9575031 AGTTCAACAT
9575041 TTTGGCATTATTTTCTCACCAGGATGAATTATGTTTTAGAAATTCTAATACTTTGTATGTATGTT
1 TTTGGCATTATTTTCTCACCAGGATGAATTATGTTTTAGAAATTCTAATACTTTGTATGTATGTT
9575106 TTTTTTATGTATTAAATTACATATTGAATTAATGTTTATGTATTAAATTTAAATTCATTAATTTT
66 TTTTTTATGTATTAAATTACATATTGAATTAATGTTTATGTATTAAATTTAAATTCATTAATTTT
9575171 TATATTTAGTTTTGAAGTTTAAATTTTAATGGAAAATTTAATTTAATTAATATTTTTTATGTATC
131 TATATTTAGTTTTGAAGTTTAAATTTTAATGGAAAATTTAATTTAATTAATATTTTTTATGTATC
9575236 CTTAAAAGTATATAGTTTAAAGTTCAAATTTCAAAAATTAA
196 CTTAAAAGTATATAGTTTAAAGTTCAAATTTCAAAAATTAA
9575277 TTTGGCATTATTTTCTCACCAGGATGAATTATGTTTTAGAAATTCTAATACTTTGTATGTATGTT
1 TTTGGCATTATTTTCTCACCAGGATGAATTATGTTTTAGAAATTCTAATACTTTGTATGTATGTT
9575342 TTTTTTATGTATTAAATTACATATTGAATTAATGTTTATGTATTAAATTTAAATTCATTAATTTT
66 TTTTTTATGTATTAAATTACATATTGAATTAATGTTTATGTATTAAATTTAAATTCATTAATTTT
9575407 TATATTTAGTTTTGAAGTTTAAATTTTAATGGAAAATTTAATTTAATTAATATTTTTTATGTATC
131 TATATTTAGTTTTGAAGTTTAAATTTTAATGGAAAATTTAATTTAATTAATATTTTTTATGTATC
9575472 CTTAAAAGTATATAGTTTAAAGTTCAAATTTCAAAAATTAA
196 CTTAAAAGTATATAGTTTAAAGTTCAAATTTCAAAAATTAA
9575513 T
1 T
9575514 CATAATATAA
Statistics
Matches: 237, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
236 237 1.00
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (236 bp):
TTTGGCATTATTTTCTCACCAGGATGAATTATGTTTTAGAAATTCTAATACTTTGTATGTATGTT
TTTTTTATGTATTAAATTACATATTGAATTAATGTTTATGTATTAAATTTAAATTCATTAATTTT
TATATTTAGTTTTGAAGTTTAAATTTTAATGGAAAATTTAATTTAATTAATATTTTTTATGTATC
CTTAAAAGTATATAGTTTAAAGTTCAAATTTCAAAAATTAA
Found at i:9575649 original size:43 final size:43
Alignment explanation
Indices: 9575584--9575725 Score: 230
Period size: 43 Copynumber: 3.3 Consensus size: 43
9575574 GATCATTATT
* * * * *
9575584 TTTAGCGGCGTTTGTGAGAAAAGTGGCGCTAAAGGTCAAGATC
1 TTTAGCGGCGTTTGCGAAAAAAGTGCCGCTAAAGGTCATGGTC
*
9575627 TTTAGCGGCGTTTGCGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGTGCCGCTAAAGGTCATGGTC
9575670 TTTAGCGGCGTTTGCGAAAAAAGTGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGCGAAAAAAGTGCCGCTAAAGGTCATGGTC
9575713 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
9575726 TTTTCAAAAA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 92 1.00
ACGTcount: A:0.25, C:0.18, G:0.31, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGCGAAAAAAGTGCCGCTAAAGGTCATGGTC
Found at i:9577396 original size:15 final size:15
Alignment explanation
Indices: 9577378--9577406 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9577368 GACTCCATTT
9577378 TATTAGGATAATTAA
1 TATTAGGATAATTAA
9577393 TATTAGGATAATTA
1 TATTAGGATAATTA
9577407 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (15 bp):
TATTAGGATAATTAA
Found at i:9577410 original size:12 final size:13
Alignment explanation
Indices: 9577376--9577418 Score: 52
Period size: 15 Copynumber: 3.2 Consensus size: 13
9577366 AAGACTCCAT
9577376 TTTATTAGGATAA
1 TTTATTAGGATAA
9577389 TTAATATTAGGATAA
1 TT--TATTAGGATAA
*
9577404 -TTATTAGGATTA
1 TTTATTAGGATAA
9577416 TTT
1 TTT
9577419 CAATTTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 10 0.38
13 4 0.15
14 1 0.04
15 11 0.42
ACGTcount: A:0.37, C:0.00, G:0.14, T:0.49
Consensus pattern (13 bp):
TTTATTAGGATAA
Found at i:9577459 original size:20 final size:20
Alignment explanation
Indices: 9577431--9577478 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
9577421 ATTTTAAAAT
*
9577431 TTTAT-TTTAATT-ATCTTTA
1 TTTATCTTTAATTAAT-TGTA
9577450 TTTATCTTTAATTAATTGTA
1 TTTATCTTTAATTAATTGTA
9577470 TTTATCTTT
1 TTTATCTTT
9577479 TTAGAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTATCTTTAATTAATTGTA
Found at i:9578049 original size:19 final size:19
Alignment explanation
Indices: 9578025--9578061 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
9578015 TGGAAGCTAG
9578025 AATCTCGCCACATAAGAAC
1 AATCTCGCCACATAAGAAC
9578044 AATCTCGCCACATAAGAA
1 AATCTCGCCACATAAGAA
9578062 ACTTTCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.30, G:0.11, T:0.16
Consensus pattern (19 bp):
AATCTCGCCACATAAGAAC
Found at i:9582614 original size:10 final size:10
Alignment explanation
Indices: 9582599--9582648 Score: 84
Period size: 10 Copynumber: 5.0 Consensus size: 10
9582589 ATATATTTTC
9582599 ATTTATCTTT
1 ATTTATCTTT
9582609 ATTTATCTTT
1 ATTTATCTTT
9582619 ATTTATCTTT
1 ATTTATCTTT
9582629 ATTTAT-TTGT
1 ATTTATCTT-T
9582639 ATTTATCTTT
1 ATTTATCTTT
9582649 TAGAATTTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
9 2 0.05
10 34 0.89
11 2 0.05
ACGTcount: A:0.20, C:0.08, G:0.02, T:0.70
Consensus pattern (10 bp):
ATTTATCTTT
Found at i:9583340 original size:17 final size:18
Alignment explanation
Indices: 9583308--9583341 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
9583298 TTTTCCTCAT
9583308 TTTAATTTCTGCAATTTA
1 TTTAATTTCTGCAATTTA
9583326 TTTAATTTC-GCAATTT
1 TTTAATTTCTGCAATTT
9583342 CAATTCACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.26, C:0.12, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTAATTTCTGCAATTTA
Found at i:9586760 original size:21 final size:20
Alignment explanation
Indices: 9586728--9586766 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
9586718 ATAAATAATA
*
9586728 TAAACAAATCAAATTTGAAT
1 TAAACAAATCAAAATTGAAT
*
9586748 TAAATCAATTCAAAATTGA
1 TAAA-CAAATCAAAATTGA
9586767 TTCAATTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.54, C:0.10, G:0.05, T:0.31
Consensus pattern (20 bp):
TAAACAAATCAAAATTGAAT
Found at i:9595006 original size:188 final size:188
Alignment explanation
Indices: 9594689--9595064 Score: 752
Period size: 188 Copynumber: 2.0 Consensus size: 188
9594679 AACTGATTGT
9594689 CTTGGTTTTCAGCCATCTCTTCGGTTGGGGGTTGAGTATCGTCTTCTTGCTCGTACTATGTGTAT
1 CTTGGTTTTCAGCCATCTCTTCGGTTGGGGGTTGAGTATCGTCTTCTTGCTCGTACTATGTGTAT
9594754 CTTAGGCTTCGTCGGATTTCTCTTTGGTTTCTGCGAACTGTGCGATCAATTTCTTCGTCAAAAAG
66 CTTAGGCTTCGTCGGATTTCTCTTTGGTTTCTGCGAACTGTGCGATCAATTTCTTCGTCAAAAAG
9594819 TAGTGGTCTTGACAGGTTTCTTCTAGTCATAAACTATAAAAACCTACCAGAAGGAGGA
131 TAGTGGTCTTGACAGGTTTCTTCTAGTCATAAACTATAAAAACCTACCAGAAGGAGGA
9594877 CTTGGTTTTCAGCCATCTCTTCGGTTGGGGGTTGAGTATCGTCTTCTTGCTCGTACTATGTGTAT
1 CTTGGTTTTCAGCCATCTCTTCGGTTGGGGGTTGAGTATCGTCTTCTTGCTCGTACTATGTGTAT
9594942 CTTAGGCTTCGTCGGATTTCTCTTTGGTTTCTGCGAACTGTGCGATCAATTTCTTCGTCAAAAAG
66 CTTAGGCTTCGTCGGATTTCTCTTTGGTTTCTGCGAACTGTGCGATCAATTTCTTCGTCAAAAAG
9595007 TAGTGGTCTTGACAGGTTTCTTCTAGTCATAAACTATAAAAACCTACCAGAAGGAGGA
131 TAGTGGTCTTGACAGGTTTCTTCTAGTCATAAACTATAAAAACCTACCAGAAGGAGGA
9595065 AAAAGAAAAT
Statistics
Matches: 188, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
188 188 1.00
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.37
Consensus pattern (188 bp):
CTTGGTTTTCAGCCATCTCTTCGGTTGGGGGTTGAGTATCGTCTTCTTGCTCGTACTATGTGTAT
CTTAGGCTTCGTCGGATTTCTCTTTGGTTTCTGCGAACTGTGCGATCAATTTCTTCGTCAAAAAG
TAGTGGTCTTGACAGGTTTCTTCTAGTCATAAACTATAAAAACCTACCAGAAGGAGGA
Found at i:9595101 original size:12 final size:12
Alignment explanation
Indices: 9595079--9595107 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
9595069 GAAAATTAGT
9595079 AAATT-AAAATA
1 AAATTAAAAATA
9595090 AAATTAAAAATA
1 AAATTAAAAATA
9595102 AAATTA
1 AAATTA
9595108 GATTGCAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
AAATTAAAAATA
Found at i:9599846 original size:19 final size:19
Alignment explanation
Indices: 9599822--9599859 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9599812 ATGAAAATAA
9599822 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
9599841 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
9599860 TCTTATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
AACAAAATTCAGGGATTTT
Found at i:9603564 original size:21 final size:20
Alignment explanation
Indices: 9603540--9603578 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
9603530 CCGTTTTGAT
9603540 TTCGTACTTTGGCCCATTTTC
1 TTCGT-CTTTGGCCCATTTTC
* *
9603561 TTCGTTTTTGGCCTATTT
1 TTCGTCTTTGGCCCATTT
9603579 CTCGTTCTTC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.08, C:0.23, G:0.15, T:0.54
Consensus pattern (20 bp):
TTCGTCTTTGGCCCATTTTC
Found at i:9607988 original size:24 final size:24
Alignment explanation
Indices: 9607954--9608007 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
9607944 TATAATTTAT
*
9607954 TTATTAAAAAAACTATACATATATTA
1 TTATTAAAAATAC--TACATATATTA
* *
9607980 TTATTAAAAATACTACTTATATTT
1 TTATTAAAAATACTACATATATTA
9608004 TTAT
1 TTAT
9608008 CATATATTAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 13 0.52
26 12 0.48
ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46
Consensus pattern (24 bp):
TTATTAAAAATACTACATATATTA
Found at i:9608118 original size:13 final size:13
Alignment explanation
Indices: 9608090--9608139 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
9608080 ATTATCTTAC
*
9608090 ATTTTAAATATATT
1 ATTTTATAT-TATT
9608104 ATTTTATATTATT
1 ATTTTATATTATT
* *
9608117 ATTTCACATTATT
1 ATTTTATATTATT
9608130 ATTTATATAT
1 ATTT-TATAT
9608140 GGTTATTATA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
13 19 0.63
14 11 0.37
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (13 bp):
ATTTTATATTATT
Found at i:9608185 original size:24 final size:23
Alignment explanation
Indices: 9608158--9608215 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 23
9608148 TATTTGTGCT
9608158 TATATTATATATTAATATATATAC
1 TATATTATATATT-ATATATATAC
* *
9608182 TATA-CAT-TATT-TTTATATAC
1 TATATTATATATTATATATATAC
9608202 -ATATTATATATTAT
1 TATATTATATATTAT
9608216 TCTAGATTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
19 3 0.11
20 10 0.36
21 4 0.14
22 5 0.18
23 2 0.07
24 4 0.14
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.53
Consensus pattern (23 bp):
TATATTATATATTATATATATAC
Found at i:9608216 original size:24 final size:25
Alignment explanation
Indices: 9608158--9608216 Score: 66
Period size: 24 Copynumber: 2.4 Consensus size: 25
9608148 TATTTGTGCT
*
9608158 TATATTATATATTAATATATATACTA
1 TATATTAT-TATTAATATACATACTA
* * *
9608184 TACATTATT-TTTATATACATATTA
1 TATATTATTATTAATATACATACTA
9608208 TATATTATT
1 TATATTATT
9608217 CTAGATTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
24 20 0.71
25 1 0.04
26 7 0.25
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (25 bp):
TATATTATTATTAATATACATACTA
Found at i:9608259 original size:19 final size:19
Alignment explanation
Indices: 9608189--9608261 Score: 56
Period size: 22 Copynumber: 3.5 Consensus size: 19
9608179 TACTATACAT
9608189 TATTTTTATATACATATTATA
1 TATTTTT-TATAC-TATTATA
* * *
9608210 TATTATTCTAGATTATTATGTTA
1 TATT-TTTTATACTATTA---TA
*
9608233 TTTTTTTTATACTATTATA
1 TATTTTTTATACTATTATA
9608252 TATTTTTTAT
1 TATTTTTTAT
9608262 CCGTATATTA
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
19 11 0.28
20 5 0.12
21 7 0.17
22 12 0.30
23 5 0.12
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (19 bp):
TATTTTTTATACTATTATA
Found at i:9608764 original size:33 final size:34
Alignment explanation
Indices: 9608722--9608785 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
9608712 TGTACATTGA
*
9608722 TATTGTATTACTT-TTTTTTTGTATGTCATGTAG
1 TATTGTATTACTTCTTTTTTTGTATATCATGTAG
*
9608755 TATTTTATTACTTCTTTTTTTGTATATCATG
1 TATTGTATTACTTCTTTTTTTGTATATCATG
9608786 CATTATTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
33 12 0.43
34 16 0.57
ACGTcount: A:0.19, C:0.08, G:0.11, T:0.62
Consensus pattern (34 bp):
TATTGTATTACTTCTTTTTTTGTATATCATGTAG
Found at i:9608793 original size:34 final size:33
Alignment explanation
Indices: 9608722--9608798 Score: 100
Period size: 34 Copynumber: 2.3 Consensus size: 33
9608712 TGTACATTGA
* * *
9608722 TATTGTATTACTTTTTTTTTGTATGTCATGTAG
1 TATTTTATTACTTTTTTTTTGTATATCATGCAG
*
9608755 TATTTTATTACTTCTTTTTTTGTATATCATGCAT
1 TATTTTATTACTT-TTTTTTTGTATATCATGCAG
*
9608789 TATTTAATTA
1 TATTTTATTA
9608799 TTGCAATGTA
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
33 12 0.32
34 26 0.68
ACGTcount: A:0.22, C:0.08, G:0.09, T:0.61
Consensus pattern (33 bp):
TATTTTATTACTTTTTTTTTGTATATCATGCAG
Found at i:9612301 original size:15 final size:15
Alignment explanation
Indices: 9612265--9612314 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
9612255 GATATTCTTT
9612265 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
9612279 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
9612295 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
9612308 TTTGCAT
1 TTTGCAT
9612315 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:9620887 original size:212 final size:210
Alignment explanation
Indices: 9620329--9620901 Score: 977
Period size: 210 Copynumber: 2.7 Consensus size: 210
9620319 CTTCATCGGG
* *
9620329 GCAGATCCAAGATGACAGATCTTATCTCTCTATATTCGGCGGGGAGCAGATCGAAGATATAGCTG
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAGCGGGGAGCAGATCGAAGATATAGCTG
* * *
9620394 ATTTGGCATTCACGTGTTTACGATGAAGCAAATGTAAGATGATTTGTCATCTCTGTATTGTCAGA
66 ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
* ** * *
9620459 AAACAAATTGAAGTCTGGCATTTCCATTTTGATGGAAGGCAGACACATAGCAGATCTTACCTTCA
131 GAACAAATCAAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
9620524 GATTTTTACGCTGAA
196 GATTTTTACGCTGAA
*
9620539 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATT-TGACGGGGAGCAGATCGAAGATATAGCT
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAG-CGGGGAGCAGATCGAAGATATAGCT
*
9620603 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTTTCGTCTCTGTATTGTCAG
65 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAG
*
9620668 AGAACAAATCAAAGTCTGGCATTTCCACTTTGATTGAAGGCAGACACATAGCAGATCTCACCTTC
130 AGAACAAATCAAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTC
*
9620733 AGATTTTTACGTTGAA
195 AGATTTTTACGCTGAA
9620749 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAAAGCGGGGAGCAGATCGAAGATATAGC
1 GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTC--AGCGGGGAGCAGATCGAAGATATAGC
*
9620814 TGATTTGGCTTTCACTTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCA
64 TGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCA
9620879 GAGAACAAATCAAAGTCTGGCAT
129 GAGAACAAATCAAAGTCTGGCAT
9620902 CTCTACATTC
Statistics
Matches: 343, Mismatches: 16, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
209 1 0.00
210 231 0.67
212 110 0.32
213 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.31
Consensus pattern (210 bp):
GCAGATCCAAGATGACAGATCTTATCTCTCTGTATTCAGCGGGGAGCAGATCGAAGATATAGCTG
ATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGTCGTCTCTGTATTGTCAGA
GAACAAATCAAAGTCTGGCATTTCCACTTTGATGGAAGGCAGACACATAGCAGATCTCACCTTCA
GATTTTTACGCTGAA
Found at i:9622920 original size:24 final size:25
Alignment explanation
Indices: 9622874--9622927 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 25
9622864 TATAATTTAT
9622874 TTATTAAAAATACTATACATATATTA
1 TTATTAAAAATAC-ATACATATATTA
* *
9622900 TTATTAAAAATAC-TACTTATATTT
1 TTATTAAAAATACATACATATATTA
9622924 TTAT
1 TTAT
9622928 CATATATTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 13 0.50
26 13 0.50
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATTAAAAATACATACATATATTA
Found at i:9623039 original size:16 final size:15
Alignment explanation
Indices: 9623010--9623055 Score: 67
Period size: 16 Copynumber: 3.0 Consensus size: 15
9623000 ATTATCTTAC
9623010 ATTTTAATTA-TATT
1 ATTTTAATTATTATT
9623024 ATTTTATATTATTATT
1 ATTTTA-ATTATTATT
9623040 ATTTTACATTATTATT
1 ATTTTA-ATTATTATT
9623056 TATATATGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
14 6 0.21
15 4 0.14
16 19 0.66
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (15 bp):
ATTTTAATTATTATT
Found at i:9623040 original size:21 final size:21
Alignment explanation
Indices: 9622996--9623185 Score: 67
Period size: 21 Copynumber: 8.7 Consensus size: 21
9622986 ATCTTTATCT
* *
9622996 TTATATTATCTTACATT-TTAA
1 TTATATTATTTTATATTATT-A
9623017 TTATATTATTTTATATTATTA
1 TTATATTATTTTATATTATTA
*
9623038 TTATTTTACATTATTAT-TTATATA
1 TTATATT--ATT-TTATATTAT-TA
* *
9623062 TGGT-TATTATATTTGTGCTTA-TA
1 T--TATATTAT-TTTAT-ATTATTA
9623085 TTATA-TATTAATATATATATATTA
1 TTATATTATT--T-TATAT-TATTA
*
9623109 -TACATTATTTTTATATACATATTA
1 TTATATTA-TTTTATAT---TATTA
*
9623133 -TATATTATTTTAGATTATTA
1 TTATATTATTTTATATTATTA
* *
9623153 TGT-TATTTTTTTATACTATTA
1 T-TATATTATTTTATATTATTA
9623174 -TATATT-TTTTAT
1 TTATATTATTTTAT
9623186 CCGTATATTA
Statistics
Matches: 133, Mismatches: 13, Indels: 48
0.69 0.07 0.25
Matches are distributed among these distances:
19 7 0.05
20 10 0.08
21 41 0.31
22 12 0.09
23 30 0.23
24 24 0.18
25 8 0.06
26 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.03, T:0.61
Consensus pattern (21 bp):
TTATATTATTTTATATTATTA
Found at i:9623105 original size:14 final size:15
Alignment explanation
Indices: 9623081--9623139 Score: 52
Period size: 14 Copynumber: 3.9 Consensus size: 15
9623071 TATTTGTGCT
9623081 TATATTATATATTAA
1 TATATTATATATTAA
9623096 TATA-TATATATT-A
1 TATATTATATATTAA
* *
9623109 TACATTAT-TTTTATA
1 TATATTATATATTA-A
9623124 TACATATTATATATTA
1 T--ATATTATATATTA
9623140 TTTTAGATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
13 7 0.21
14 11 0.32
15 6 0.18
17 6 0.18
18 4 0.12
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.54
Consensus pattern (15 bp):
TATATTATATATTAA
Found at i:9623117 original size:24 final size:24
Alignment explanation
Indices: 9623090--9623141 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
9623080 TTATATTATA
*
9623090 TATTAATATATATATATTATACAT
1 TATTAATATATACATATTATACAT
** *
9623114 TATTTTTATATACATATTATATAT
1 TATTAATATATACATATTATACAT
9623138 TATT
1 TATT
9623142 TTAGATTATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (24 bp):
TATTAATATATACATATTATACAT
Found at i:9623142 original size:24 final size:24
Alignment explanation
Indices: 9623096--9623143 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
9623086 TATATATTAA
*
9623096 TATATATATATTATACATTATTTT
1 TATATACATATTATACATTATTTT
*
9623120 TATATACATATTATATATTATTTT
1 TATATACATATTATACATTATTTT
9623144 AGATTATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (24 bp):
TATATACATATTATACATTATTTT
Found at i:9623701 original size:34 final size:34
Alignment explanation
Indices: 9623646--9623723 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
9623636 TGTACATTGA
* * * *
9623646 TATTGTATTACTTTTTTTTTTGTATGTCATGCAC
1 TATTTTATTACTTCTTCTTTTGTATATCATGCAC
*
9623680 TATTTTATTACTTCTTCTTTTGTATATCATGCAT
1 TATTTTATTACTTCTTCTTTTGTATATCATGCAC
*
9623714 TATTTAATTA
1 TATTTTATTA
9623724 TTGCAATGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.22, C:0.12, G:0.08, T:0.59
Consensus pattern (34 bp):
TATTTTATTACTTCTTCTTTTGTATATCATGCAC
Found at i:9625271 original size:19 final size:19
Alignment explanation
Indices: 9625247--9625284 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
9625237 ATGAAAATAA
9625247 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
9625266 AACAAAATTCAGGGATTTT
1 AACAAAATTCAGGGATTTT
9625285 TCTTATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
AACAAAATTCAGGGATTTT
Found at i:9629192 original size:27 final size:27
Alignment explanation
Indices: 9629156--9629231 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
9629146 AATAAATTAG
* *
9629156 ATAATCGTGGCAGAGCCACCAGAACAG
1 ATAATTGTGGCAGAGCCACCAGAACAA
*
9629183 A-AATATGTGGCAGAGCCACCAGATCAA
1 ATAAT-TGTGGCAGAGCCACCAGAACAA
*
9629210 ATAATTGTGGCATAGCCACCAG
1 ATAATTGTGGCAGAGCCACCAG
9629232 GACGCTTCCT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 3 0.07
27 37 0.86
28 3 0.07
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.16
Consensus pattern (27 bp):
ATAATTGTGGCAGAGCCACCAGAACAA
Found at i:9635131 original size:20 final size:20
Alignment explanation
Indices: 9635103--9635144 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
9635093 AAATAAACAC
* *
9635103 ATAATTATTCATCTAATATT
1 ATAACTATTCAACTAATATT
9635123 ATAACTATTCAACTAATATT
1 ATAACTATTCAACTAATATT
9635143 AT
1 AT
9635145 TTAAATAGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (20 bp):
ATAACTATTCAACTAATATT
Found at i:9643128 original size:3 final size:3
Alignment explanation
Indices: 9643120--9643166 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
9643110 ATGAATTAAA
*
9643120 TAT TAT TA- TAT TAT TAT TAT AAT GTAT TAT TAT TAT TAAT T-T TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT T-AT TAT TAT
9643165 TA
1 TA
9643167 ACTAATACAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
2 4 0.11
3 29 0.76
4 5 0.13
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:9644246 original size:23 final size:23
Alignment explanation
Indices: 9644220--9644308 Score: 124
Period size: 23 Copynumber: 3.9 Consensus size: 23
9644210 CTGAGTGCCG
**
9644220 TTCTGGTGCATTTGGGTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
9644243 TTCTGGTGTGTTTGGGTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
*
9644266 TTCTGGTGTGTTTGGTTGGATTA
1 TTCTGGTGTGTTTGGGTGGATTA
* * *
9644289 TTTTGGTTTGTTTGGTTGGA
1 TTCTGGTGTGTTTGGGTGGA
9644309 ATCCGTGTAT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.09, C:0.04, G:0.36, T:0.51
Consensus pattern (23 bp):
TTCTGGTGTGTTTGGGTGGATTA
Found at i:9651313 original size:13 final size:13
Alignment explanation
Indices: 9651295--9651321 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9651285 GGGGTTGTTT
9651295 ATTAAACTAATTA
1 ATTAAACTAATTA
9651308 ATTAAACTAATTA
1 ATTAAACTAATTA
9651321 A
1 A
9651322 ATAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:9651318 original size:9 final size:9
Alignment explanation
Indices: 9651306--9651339 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
9651296 TTAAACTAAT
9651306 TAATTAAAC
1 TAATTAAAC
9651315 TAATTAAA-
1 TAATTAAAC
9651323 TAATTAAAC
1 TAATTAAAC
*
9651332 TAAGTAAA
1 TAATTAAA
9651340 GAGAAAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (9 bp):
TAATTAAAC
Found at i:9651328 original size:17 final size:17
Alignment explanation
Indices: 9651306--9651339 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9651296 TTAAACTAAT
*
9651306 TAATTAAACTAATTAAA
1 TAATTAAACTAAGTAAA
9651323 TAATTAAACTAAGTAAA
1 TAATTAAACTAAGTAAA
9651340 GAGAAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAACTAAGTAAA
Found at i:9653763 original size:6 final size:6
Alignment explanation
Indices: 9653754--9653798 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
9653744 AATAAAATTT
* * *
9653754 AAATGA AAATAA AAATAA AAAGAA GAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAA
9653799 GATAAGAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (6 bp):
AAATAA
Found at i:9658151 original size:161 final size:161
Alignment explanation
Indices: 9657886--9658207 Score: 644
Period size: 161 Copynumber: 2.0 Consensus size: 161
9657876 TCAATCTTTT
9657886 TATTGAGAAGTTCTACCTAATTAGAGAGCATGGTGACTGAATCGATGTTATAAACGTCGGTTGTT
1 TATTGAGAAGTTCTACCTAATTAGAGAGCATGGTGACTGAATCGATGTTATAAACGTCGGTTGTT
9657951 TTCGTTGGCTTTGTCTTCATAACTTGCCACTGATAGTTATTCAGTGACATCTCCTCTATAAATTC
66 TTCGTTGGCTTTGTCTTCATAACTTGCCACTGATAGTTATTCAGTGACATCTCCTCTATAAATTC
9658016 ATTGGCATCTTCTGGTGTTTTATTATTGATA
131 ATTGGCATCTTCTGGTGTTTTATTATTGATA
9658047 TATTGAGAAGTTCTACCTAATTAGAGAGCATGGTGACTGAATCGATGTTATAAACGTCGGTTGTT
1 TATTGAGAAGTTCTACCTAATTAGAGAGCATGGTGACTGAATCGATGTTATAAACGTCGGTTGTT
9658112 TTCGTTGGCTTTGTCTTCATAACTTGCCACTGATAGTTATTCAGTGACATCTCCTCTATAAATTC
66 TTCGTTGGCTTTGTCTTCATAACTTGCCACTGATAGTTATTCAGTGACATCTCCTCTATAAATTC
9658177 ATTGGCATCTTCTGGTGTTTTATTATTGATA
131 ATTGGCATCTTCTGGTGTTTTATTATTGATA
9658208 GTTCCGCCAG
Statistics
Matches: 161, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
161 161 1.00
ACGTcount: A:0.24, C:0.16, G:0.19, T:0.40
Consensus pattern (161 bp):
TATTGAGAAGTTCTACCTAATTAGAGAGCATGGTGACTGAATCGATGTTATAAACGTCGGTTGTT
TTCGTTGGCTTTGTCTTCATAACTTGCCACTGATAGTTATTCAGTGACATCTCCTCTATAAATTC
ATTGGCATCTTCTGGTGTTTTATTATTGATA
Found at i:9659337 original size:13 final size:13
Alignment explanation
Indices: 9659319--9659345 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9659309 GGGATTGTTT
9659319 ATTAAACTAATTA
1 ATTAAACTAATTA
9659332 ATTAAACTAATTA
1 ATTAAACTAATTA
9659345 A
1 A
9659346 ATAATTAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (13 bp):
ATTAAACTAATTA
Found at i:9659342 original size:9 final size:9
Alignment explanation
Indices: 9659330--9659363 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
9659320 TTAAACTAAT
9659330 TAATTAAAC
1 TAATTAAAC
9659339 TAATTAAA-
1 TAATTAAAC
9659347 TAATTAAAC
1 TAATTAAAC
*
9659356 TAAGTAAA
1 TAATTAAA
9659364 GAGAAAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.35
9 15 0.65
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (9 bp):
TAATTAAAC
Found at i:9659352 original size:17 final size:17
Alignment explanation
Indices: 9659330--9659363 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
9659320 TTAAACTAAT
*
9659330 TAATTAAACTAATTAAA
1 TAATTAAACTAAGTAAA
9659347 TAATTAAACTAAGTAAA
1 TAATTAAACTAAGTAAA
9659364 GAGAAAAGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (17 bp):
TAATTAAACTAAGTAAA
Found at i:9671135 original size:46 final size:46
Alignment explanation
Indices: 9671072--9671164 Score: 132
Period size: 46 Copynumber: 2.0 Consensus size: 46
9671062 GTCTTATTTA
* * *
9671072 TCTTTGACATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCAT
1 TCTTTGACATGATGCCATAGTATCTTTCAACCATGGTCTTACACAT
* * *
9671118 TCTTTGTCATGTTGCCATGGTATCTTTCAACCATGGTCTTACACAT
1 TCTTTGACATGATGCCATAGTATCTTTCAACCATGGTCTTACACAT
9671164 T
1 T
9671165 TCATATCAGA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.20, C:0.23, G:0.15, T:0.42
Consensus pattern (46 bp):
TCTTTGACATGATGCCATAGTATCTTTCAACCATGGTCTTACACAT
Found at i:9672873 original size:11 final size:11
Alignment explanation
Indices: 9672857--9672904 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
9672847 CTTTATATAC
9672857 TAATAAAATAA
1 TAATAAAATAA
*
9672868 TAATAAAATATCT
1 TAATAAAATA--A
* *
9672881 TATTAAAATAT
1 TAATAAAATAA
9672892 TAATAAAATAA
1 TAATAAAATAA
9672903 TA
1 TA
9672905 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:9674537 original size:30 final size:30
Alignment explanation
Indices: 9674483--9674540 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
9674473 CACGGCCATG
* *
9674483 ACACACGGGCGTGTGGCCTACCCGTGTGTC
1 ACACACGGGCATGTGGACTACCCGTGTGTC
* *
9674513 ACACACGGGCATGTGGATTGCCCGTGTG
1 ACACACGGGCATGTGGACTACCCGTGTG
9674541 GAACTGCCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.16, C:0.29, G:0.34, T:0.21
Consensus pattern (30 bp):
ACACACGGGCATGTGGACTACCCGTGTGTC
Found at i:9676745 original size:11 final size:11
Alignment explanation
Indices: 9676725--9676763 Score: 51
Period size: 12 Copynumber: 3.4 Consensus size: 11
9676715 AAATAGAACT
*
9676725 AAAAATAAAAG
1 AAAAAGAAAAG
9676736 AAAAAGAAAAAG
1 AAAAAG-AAAAG
9676748 AAAAAGAAAAG
1 AAAAAGAAAAG
9676759 CAAAA
1 -AAAA
9676764 TAAAGTAGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
11 10 0.40
12 15 0.60
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:9676763 original size:6 final size:6
Alignment explanation
Indices: 9676731--9676757 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
9676721 AACTAAAAAT
9676731 AAAAGA AAAAGA AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAA
9676758 GCAAAATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:9676763 original size:12 final size:11
Alignment explanation
Indices: 9676725--9676763 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
9676715 AAATAGAACT
*
9676725 AAAAATAAAAG
1 AAAAAGAAAAG
9676736 AAAAAGAAAAAG
1 AAAAAG-AAAAG
9676748 AAAAAGAAAAG
1 AAAAAGAAAAG
*
9676759 CAAAA
1 AAAAA
9676764 TAAAGTAGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.82, C:0.03, G:0.13, T:0.03
Consensus pattern (11 bp):
AAAAAGAAAAG
Found at i:9678017 original size:28 final size:27
Alignment explanation
Indices: 9677986--9678040 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 27
9677976 TTTATTATTT
* *
9677986 TTCAATAGCAATTAATCAATCAGTAATA
1 TTCAATAACAATCAATCAATCAG-AATA
* *
9678014 TTCATTAACAATCAGTCAATCAGAATA
1 TTCAATAACAATCAATCAATCAGAATA
9678041 ATTATTTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.31
Consensus pattern (27 bp):
TTCAATAACAATCAATCAATCAGAATA
Found at i:9678069 original size:18 final size:18
Alignment explanation
Indices: 9678002--9678197 Score: 106
Period size: 18 Copynumber: 10.3 Consensus size: 18
9677992 AGCAATTAAT
*
9678002 CAATCAGTAATATTCATTAA
1 CAATCAGT--TATTCAGTAA
* *
9678022 CAATCAGTCAATCAG-AA
1 CAATCAGTTATTCAGTAA
* * *
9678039 TAATTATTTATTCAGTAA
1 CAATCAGTTATTCAGTAA
* *
9678057 CAGTCAGTTATTCGGTAA
1 CAATCAGTTATTCAGTAA
* *
9678075 CAATCAATTATTCAATAA
1 CAATCAGTTATTCAGTAA
*
9678093 TAATCAGTTATTCAGTATCAA
1 CAATCAGTTATTCAG--T-AA
* *
9678114 TCAATTGATTGGTTATCCAGTAA
1 -CAA-TCA---GTTATTCAGTAA
* *
9678137 CAGTCAATTATTCAGTAA
1 CAATCAGTTATTCAGTAA
* * *
9678155 AAATCAGATATACAGTAA
1 CAATCAGTTATTCAGTAA
* *
9678173 CAATTAAATTATTCAGTAA
1 CAA-TCAGTTATTCAGTAA
9678192 CAATCA
1 CAATCA
9678198 ATCTTTCTAG
Statistics
Matches: 128, Mismatches: 38, Indels: 22
0.68 0.20 0.12
Matches are distributed among these distances:
17 12 0.09
18 72 0.56
19 14 0.11
20 9 0.07
21 4 0.03
22 4 0.03
23 4 0.03
24 1 0.01
26 8 0.06
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.34
Consensus pattern (18 bp):
CAATCAGTTATTCAGTAA
Found at i:9687839 original size:27 final size:28
Alignment explanation
Indices: 9687787--9687839 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
9687777 AATTCCTCAT
*
9687787 TTTCCCTCTTTCTCTTTTTCCTTCTTTC
1 TTTCCCTCTCTCTCTTTTTCCTTCTTTC
* *
9687815 TTTCCCT-TCTCTGTTTTTCGTTCTT
1 TTTCCCTCTCTCTCTTTTTCCTTCTT
9687840 CATTCTGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 15 0.68
28 7 0.32
ACGTcount: A:0.00, C:0.32, G:0.04, T:0.64
Consensus pattern (28 bp):
TTTCCCTCTCTCTCTTTTTCCTTCTTTC
Found at i:9688215 original size:35 final size:31
Alignment explanation
Indices: 9688151--9688219 Score: 84
Period size: 35 Copynumber: 2.1 Consensus size: 31
9688141 TATTTATCAT
* *
9688151 ATAAATATCTTATAATATAATTATTTATTTA
1 ATAAATATCTTATAATATAAATATCTATTTA
9688182 ATAAATATCTTTTATAAATAATAAATATCTATTTA
1 ATAAATATC--TTAT-AAT-ATAAATATCTATTTA
9688217 ATA
1 ATA
9688220 TCAAATACAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 9 0.28
33 4 0.12
34 3 0.09
35 16 0.50
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (31 bp):
ATAAATATCTTATAATATAAATATCTATTTA
Found at i:9691199 original size:16 final size:17
Alignment explanation
Indices: 9691175--9691208 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
9691165 TAGTAACAAG
*
9691175 ATCTGCCTTAGGT-TTT
1 ATCTCCCTTAGGTATTT
9691191 ATCTCCCTTAGGTATTT
1 ATCTCCCTTAGGTATTT
9691208 A
1 A
9691209 GGGGATTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.47
Consensus pattern (17 bp):
ATCTCCCTTAGGTATTT
Found at i:9693618 original size:7 final size:7
Alignment explanation
Indices: 9693608--9693635 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
9693598 AAGATAAAAG
9693608 TAAATAA
1 TAAATAA
9693615 TAAATAA
1 TAAATAA
9693622 TAAATAA
1 TAAATAA
9693629 TAAATAA
1 TAAATAA
9693636 AAGTCTTCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
TAAATAA
Found at i:9708882 original size:16 final size:16
Alignment explanation
Indices: 9708831--9708899 Score: 54
Period size: 17 Copynumber: 4.1 Consensus size: 16
9708821 CACTTTAATA
*
9708831 TTAAATTAATATAATAC
1 TTAAATTAATAT-ATAT
9708848 TTAAGTATTAGAT-TATAT
1 TTAA--ATTA-ATATATAT
9708866 TTAATATTAA-ATATA-
1 TTAA-ATTAATATATAT
9708881 TTAAATTAATATAATAT
1 TTAAATTAATAT-ATAT
9708898 TT
1 TT
9708900 TACCTACAAG
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
14 5 0.11
15 6 0.14
16 8 0.18
17 11 0.25
18 7 0.16
19 5 0.11
20 2 0.05
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (16 bp):
TTAAATTAATATATAT
Found at i:9711511 original size:20 final size:20
Alignment explanation
Indices: 9711470--9711512 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
9711460 ATTCGACCAA
*
9711470 TTTTGGGTCTCAGTCTCGAT
1 TTTTGGGTCTCAGTCTCAAT
* *
9711490 TTTTGGGTCTCGGTTTCAAT
1 TTTTGGGTCTCAGTCTCAAT
9711510 TTT
1 TTT
9711513 CAATCTCAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.09, C:0.16, G:0.23, T:0.51
Consensus pattern (20 bp):
TTTTGGGTCTCAGTCTCAAT
Found at i:9712577 original size:22 final size:22
Alignment explanation
Indices: 9712549--9712594 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
9712539 TTGGAATTGT
9712549 AGACACCATAATAATCTTTCTA
1 AGACACCATAATAATCTTTCTA
9712571 AGACACCATAATAATCTTTCTA
1 AGACACCATAATAATCTTTCTA
9712593 AG
1 AG
9712595 TATTTGAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.30
Consensus pattern (22 bp):
AGACACCATAATAATCTTTCTA
Found at i:9713884 original size:32 final size:33
Alignment explanation
Indices: 9713841--9713947 Score: 103
Period size: 32 Copynumber: 3.6 Consensus size: 33
9713831 TTATAATTTA
9713841 TACAAAATTATA-TATTTTAATATGAAGTAATT
1 TACAAAATTATACTATTTTAATATGAAGTAATT
*
9713873 TACAAATTTATACTA--TT--T-T--A-T--TT
1 TACAAAATTATACTATTTTAATATGAAGTAATT
*
9713896 TCCAAAATTATA-TATTTTAATATGAAGTAATT
1 TACAAAATTATACTATTTTAATATGAAGTAATT
*
9713928 TACAAATTTATACTATTTTA
1 TACAAAATTATACTATTTTA
9713948 TTTTCCAAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 23
0.67 0.06 0.27
Matches are distributed among these distances:
22 2 0.03
23 12 0.21
24 2 0.03
25 1 0.02
26 2 0.03
27 1 0.02
28 1 0.02
29 2 0.03
30 1 0.02
31 2 0.03
32 23 0.40
33 9 0.16
ACGTcount: A:0.42, C:0.07, G:0.04, T:0.48
Consensus pattern (33 bp):
TACAAAATTATACTATTTTAATATGAAGTAATT
Found at i:9713895 original size:22 final size:22
Alignment explanation
Indices: 9713871--9713914 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
9713861 TATGAAGTAA
*
9713871 TTTACAAATTTATACTATTTTAT
1 TTTACAAAATTATA-TATTTTAT
*
9713894 TTTCCAAAATTATATATTTTA
1 TTTACAAAATTATATATTTTA
9713915 ATATGAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTACAAAATTATATATTTTAT
Found at i:9713902 original size:55 final size:55
Alignment explanation
Indices: 9713843--9713969 Score: 254
Period size: 55 Copynumber: 2.3 Consensus size: 55
9713833 ATAATTTATA
9713843 CAAAATTATATATTTTAATATGAAGTAATTTACAAATTTATACTATTTTATTTTC
1 CAAAATTATATATTTTAATATGAAGTAATTTACAAATTTATACTATTTTATTTTC
9713898 CAAAATTATATATTTTAATATGAAGTAATTTACAAATTTATACTATTTTATTTTC
1 CAAAATTATATATTTTAATATGAAGTAATTTACAAATTTATACTATTTTATTTTC
9713953 CAAAATTATATATTTTA
1 CAAAATTATATATTTTA
9713970 GCATGTAACA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 72 1.00
ACGTcount: A:0.41, C:0.07, G:0.03, T:0.49
Consensus pattern (55 bp):
CAAAATTATATATTTTAATATGAAGTAATTTACAAATTTATACTATTTTATTTTC
Found at i:9713950 original size:22 final size:22
Alignment explanation
Indices: 9713926--9713969 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
9713916 TATGAAGTAA
*
9713926 TTTACAAATTTATACTATTTTAT
1 TTTACAAAATTATA-TATTTTAT
*
9713949 TTTCCAAAATTATATATTTTA
1 TTTACAAAATTATATATTTTA
9713970 GCATGTAACA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (22 bp):
TTTACAAAATTATATATTTTAT
Found at i:9715355 original size:24 final size:24
Alignment explanation
Indices: 9715328--9715379 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
9715318 TTAGTAAGTC
*
9715328 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
9715352 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
9715376 AAAT
1 AAAT
9715380 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:9716831 original size:24 final size:24
Alignment explanation
Indices: 9716804--9716855 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
9716794 TTAGTAAGTC
*
9716804 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
9716828 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
9716852 AAAT
1 AAAT
9716856 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:9718894 original size:24 final size:24
Alignment explanation
Indices: 9718867--9718918 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
9718857 TTAGTAAGTC
*
9718867 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
9718891 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
9718915 AAAT
1 AAAT
9718919 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:9720595 original size:24 final size:24
Alignment explanation
Indices: 9720568--9720619 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
9720558 TTAGTAAGTC
*
9720568 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
9720592 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
9720616 AAAT
1 AAAT
9720620 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:9732976 original size:23 final size:23
Alignment explanation
Indices: 9732950--9732994 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
9732940 TAGGTATGTG
*
9732950 ATGACGTTATCTT-ATAAATATGC
1 ATGAAGTTATCTTGA-AAATATGC
*
9732973 ATGAATTTATCTTGAAAATATG
1 ATGAAGTTATCTTGAAAATATG
9732995 TTGAATTGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.40
Consensus pattern (23 bp):
ATGAAGTTATCTTGAAAATATGC
Found at i:9734655 original size:12 final size:12
Alignment explanation
Indices: 9734615--9734648 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
9734605 TTATCTACAA
*
9734615 TACAAATATAAG
1 TACAAATATAAC
9734627 TACAAA-ATAAC
1 TACAAATATAAC
9734638 TACAAATATAA
1 TACAAATATAA
9734649 TTCCAAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.24
Consensus pattern (12 bp):
TACAAATATAAC
Found at i:9735121 original size:20 final size:20
Alignment explanation
Indices: 9735096--9735146 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
9735086 ATTTTTTAAC
9735096 AAAAATTGTAAAAAAAAATA
1 AAAAATTGTAAAAAAAAATA
* *
9735116 AAAAATCT-TATAAATAAATA
1 AAAAAT-TGTAAAAAAAAATA
9735136 AATAAATTGTA
1 AA-AAATTGTA
9735147 TAAAGACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.27
Consensus pattern (20 bp):
AAAAATTGTAAAAAAAAATA
Found at i:9737660 original size:56 final size:56
Alignment explanation
Indices: 9737574--9737685 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
9737564 AGAATTCCAC
9737574 GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
1 GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
9737630 GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
1 GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
9737686 ATGGAATGGC
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.34, C:0.16, G:0.36, T:0.14
Consensus pattern (56 bp):
GGAAGCCCAGAGATGGTGCTAAGGAAAGGCTCAGAAAAGTACCAACGGAGTGGGTT
Found at i:9756340 original size:16 final size:17
Alignment explanation
Indices: 9756314--9756352 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
9756304 TTAAAAGAAT
*
9756314 AATTTTATTATTATATA
1 AATTTTATTATTATAAA
*
9756331 AATTTT-TTATTTTAAA
1 AATTTTATTATTATAAA
9756347 AATTTT
1 AATTTT
9756353 GAAAGAATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
AATTTTATTATTATAAA
Found at i:9756978 original size:23 final size:23
Alignment explanation
Indices: 9756927--9756984 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
9756917 CTTTTAATGT
*
9756927 TATATTTTTAAAAAAATAAAATA
1 TATATTTTTAAATAAATAAAATA
* * * *
9756950 TGTATTTTTAAATATATTAATTA
1 TATATTTTTAAATAAATAAAATA
9756973 TATA-TTTTAAAT
1 TATATTTTTAAAT
9756985 TAATTTCCTA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
22 8 0.28
23 21 0.72
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (23 bp):
TATATTTTTAAATAAATAAAATA
Found at i:9764068 original size:23 final size:23
Alignment explanation
Indices: 9764038--9764088 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
9764028 TTTGTTTATT
9764038 TAGATTTGACCTGATTCAAAATG
1 TAGATTTGACCTGATTCAAAATG
9764061 TAGATTTGACCTGATTCAAAATG
1 TAGATTTGACCTGATTCAAAATG
9764084 TAGAT
1 TAGAT
9764089 ATTTCTCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (23 bp):
TAGATTTGACCTGATTCAAAATG
Found at i:9766667 original size:68 final size:68
Alignment explanation
Indices: 9766572--9766776 Score: 216
Period size: 69 Copynumber: 3.0 Consensus size: 68
9766562 AGTGTAAGTG
* * * * *
9766572 TGAG-TATAGGAGTGTTCTTTAGCCAATGTGAGATTAAAATTAACTTTTAGTGAAAATAGTGTAG
1 TGAGCTATAGGAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAG
9766636 AAA
66 AAA
* * *
9766639 TGAGCTATGGGAGTATTCTCTAGTCAATGT-AGAATAAAAATTAACTTTTGAATGAAAGTAGTGA
1 TGAGCTATAGGAGTATTCTCTAGTCAATGTGAG-ATTAAAATTAACTTTT-AATGAAAATAGTGA
*
9766703 AGAAG
64 AGAAA
* * * * * * * * *
9766708 CGAGCTACAAGTGTATTCTCTAATCAATGTGAGATTAAATTTAAATTTTAATGAAAATTGCGAAG
1 TGAGCTATAGGAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAG
9766773 AAA
66 AAA
9766776 T
1 T
9766777 TACACTTACT
Statistics
Matches: 111, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
67 6 0.05
68 51 0.46
69 52 0.47
70 2 0.02
ACGTcount: A:0.39, C:0.08, G:0.20, T:0.33
Consensus pattern (68 bp):
TGAGCTATAGGAGTATTCTCTAGTCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAG
AAA
Found at i:9766974 original size:51 final size:51
Alignment explanation
Indices: 9766866--9766975 Score: 125
Period size: 51 Copynumber: 2.2 Consensus size: 51
9766856 ATTAATTTTT
* **
9766866 AATAAAATAATGAAGAAGTGAGCTATAAGAGTATTTCATAGTCAATGTAGA
1 AATAAAATAATGAAGAAGTGAGCTATAAGAATATTTCATAGTCAACATAGA
* * *
9766917 AATAAAATAATTGAA-AAGTGTGCTATGAGAATATTCTC-TAGTCAACATGGA
1 AATAAAATAA-TGAAGAAGTGAGCTATAAGAATATT-TCATAGTCAACATAGA
*
9766968 ATTAAAAT
1 AATAAAAT
9766976 TAACTTTTTT
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
51 44 0.88
52 6 0.12
ACGTcount: A:0.46, C:0.07, G:0.17, T:0.29
Consensus pattern (51 bp):
AATAAAATAATGAAGAAGTGAGCTATAAGAATATTTCATAGTCAACATAGA
Found at i:9767159 original size:36 final size:36
Alignment explanation
Indices: 9767112--9767184 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
9767102 TATATATATA
9767112 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
1 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
9767148 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
1 TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
9767184 T
1 T
9767185 CTAGAAAGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (36 bp):
TATATATGGTTATAAATGTTTTAAATAATAAGTTAT
Found at i:9776531 original size:18 final size:18
Alignment explanation
Indices: 9776508--9776563 Score: 50
Period size: 18 Copynumber: 3.3 Consensus size: 18
9776498 AAAAAAAGGA
9776508 AAATTAAATAATAAATTT
1 AAATTAAATAATAAATTT
9776526 AAATT--AT-A-AAATTT
1 AAATTAAATAATAAATTT
* *
9776540 ATATTCAAAAAAT-AATTT
1 AAATT-AAATAATAAATTT
9776558 AAATTA
1 AAATTA
9776564 TTCATTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 11
0.68 0.07 0.25
Matches are distributed among these distances:
14 10 0.33
15 1 0.03
16 2 0.07
17 2 0.07
18 15 0.50
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATTAAATAATAAATTT
Found at i:9782370 original size:12 final size:12
Alignment explanation
Indices: 9782349--9782382 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
9782339 ATATATTTTT
*
9782349 AAAATTATATAA
1 AAAATAATATAA
9782361 AAAATAATATAA
1 AAAATAATATAA
*
9782373 AAATTAATAT
1 AAAATAATAT
9782383 GGGCTGGCCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:9784329 original size:22 final size:22
Alignment explanation
Indices: 9784304--9784346 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
9784294 TATAATTATG
* *
9784304 AAATTTAAATATTAAAATAAAA
1 AAATATAAATATCAAAATAAAA
*
9784326 AAATATAAATATCAAAGTAAA
1 AAATATAAATATCAAAATAAA
9784347 CTATAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (22 bp):
AAATATAAATATCAAAATAAAA
Found at i:9790381 original size:20 final size:19
Alignment explanation
Indices: 9790338--9790381 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
9790328 ACAATTAAAG
*
9790338 AAAA-CAAATAATAAATAA
1 AAAAGCAAATAAAAAATAA
9790356 ATAAAGCAAATAAAAAATGAA
1 A-AAAGCAAATAAAAAAT-AA
9790377 AAAAG
1 AAAAG
9790382 TCTTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 1 0.05
19 3 0.14
20 15 0.68
21 3 0.14
ACGTcount: A:0.75, C:0.05, G:0.07, T:0.14
Consensus pattern (19 bp):
AAAAGCAAATAAAAAATAA
Found at i:9800644 original size:7 final size:7
Alignment explanation
Indices: 9800632--9800657 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
9800622 GTTATAAAGT
9800632 TTTATTC
1 TTTATTC
9800639 TTTATTC
1 TTTATTC
9800646 TTTATTC
1 TTTATTC
9800653 TTTAT
1 TTTAT
9800658 ATACATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTATTC
Found at i:9802855 original size:14 final size:14
Alignment explanation
Indices: 9802836--9802868 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
9802826 CATGCGTTAG
9802836 TTGTGATTTAGTTT
1 TTGTGATTTAGTTT
9802850 TTGTGATTTAGTTT
1 TTGTGATTTAGTTT
9802864 TTGTG
1 TTGTG
9802869 CTTTGAGTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.24, T:0.64
Consensus pattern (14 bp):
TTGTGATTTAGTTT
Found at i:9810222 original size:108 final size:108
Alignment explanation
Indices: 9810108--9810313 Score: 344
Period size: 108 Copynumber: 1.9 Consensus size: 108
9810098 GTTGGACTGA
*
9810108 TAGATCACGACATGAGAATGTGTAAGTCCATGTGGCT-AAGACTCAT-GACAATATATGATTGTA
1 TAGATCACGACATGAGAATGTGTAAGTCCATGTGGCTGAA-ACCCATAG-CAATATATGATTGTA
*
9810171 TGAATGTTCATGGTGAAGCCTGCGATAATGTGTAGATTGAATTGG
64 TGAATGTTCATGGTGAAGCCTGCAATAATGTGTAGATTGAATTGG
*
9810216 TAGATCACGACATGAGAATGTGTAAGTCCATGTGGTTGAAACCCATAGCAATATATGATTGTATG
1 TAGATCACGACATGAGAATGTGTAAGTCCATGTGGCTGAAACCCATAGCAATATATGATTGTATG
*
9810281 AATGTTCATGGTGAAGCCTTCAATAATGTGTAG
66 AATGTTCATGGTGAAGCCTGCAATAATGTGTAG
9810314 GTCAAACTAG
Statistics
Matches: 92, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
108 89 0.97
109 3 0.03
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.31
Consensus pattern (108 bp):
TAGATCACGACATGAGAATGTGTAAGTCCATGTGGCTGAAACCCATAGCAATATATGATTGTATG
AATGTTCATGGTGAAGCCTGCAATAATGTGTAGATTGAATTGG
Found at i:9810329 original size:108 final size:108
Alignment explanation
Indices: 9810109--9810338 Score: 338
Period size: 108 Copynumber: 2.1 Consensus size: 108
9810099 TTGGACTGAT
*
9810109 AGATCACGACATGAGAATGTGTAAGTCCATGTGGCTAAGACTCATGACAATATATGATTGTATGA
1 AGATCACGACATGAGAATGTGTAAGTCCATGTGGCTAAGACCCATGACAATATATGATTGTATGA
* ** * * *
9810174 ATGTTCATGGTGAAGCCTGCGATAATGTGTAGATTGAATTGGT
66 ATGTTCATGGTGAAGCCTGCAATAATGTGTAGATCAAACTAGA
*
9810217 AGATCACGACATGAGAATGTGTAAGTCCATGTGGTTGAA-ACCCAT-AGCAATATATGATTGTAT
1 AGATCACGACATGAGAATGTGTAAGTCCATGTGGCT-AAGACCCATGA-CAATATATGATTGTAT
* *
9810280 GAATGTTCATGGTGAAGCCTTCAATAATGTGTAGGTCAAACTAGA
64 GAATGTTCATGGTGAAGCCTGCAATAATGTGTAGATCAAACTAGA
9810325 AGATCACGACATGA
1 AGATCACGACATGA
9810339 AATTATGTGC
Statistics
Matches: 110, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
107 1 0.01
108 107 0.97
109 2 0.02
ACGTcount: A:0.33, C:0.13, G:0.24, T:0.29
Consensus pattern (108 bp):
AGATCACGACATGAGAATGTGTAAGTCCATGTGGCTAAGACCCATGACAATATATGATTGTATGA
ATGTTCATGGTGAAGCCTGCAATAATGTGTAGATCAAACTAGA
Found at i:9810459 original size:29 final size:29
Alignment explanation
Indices: 9810422--9810484 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
9810412 ATTCTGTATG
*
9810422 TTTGCTTGTGCAGCGTGATTTGCTAAGAT
1 TTTGTTTGTGCAGCGTGATTTGCTAAGAT
*
9810451 TTTGTTTGTGTAGCGTGATTTGCTAAGAT
1 TTTGTTTGTGCAGCGTGATTTGCTAAGAT
9810480 TTTGT
1 TTTGT
9810485 GGCAAGTTCT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.16, C:0.10, G:0.27, T:0.48
Consensus pattern (29 bp):
TTTGTTTGTGCAGCGTGATTTGCTAAGAT
Found at i:9813982 original size:35 final size:36
Alignment explanation
Indices: 9813899--9813971 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
9813889 CACACGAACC
9813899 TAACCATAAACGACAGTAAAAAAGGTGTTAAAGAGA
1 TAACCATAAACGACAGTAAAAAAGGTGTTAAAGAGA
9813935 TAACCATAAACGACAGTAAAAAAGGTGTTAAAGAGA
1 TAACCATAAACGACAGTAAAAAAGGTGTTAAAGAGA
9813971 T
1 T
9813972 TACAACAACG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.52, C:0.11, G:0.19, T:0.18
Consensus pattern (36 bp):
TAACCATAAACGACAGTAAAAAAGGTGTTAAAGAGA
Found at i:9816929 original size:6 final size:6
Alignment explanation
Indices: 9816918--9816980 Score: 81
Period size: 6 Copynumber: 10.5 Consensus size: 6
9816908 TAAGTCTAAG
* * *
9816918 AAAATA ATAATA AACATA AACATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
9816966 GATATA AAAATA AAA
1 AAAATA AAAATA AAA
9816981 CAAATAAACT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 49 1.00
ACGTcount: A:0.76, C:0.03, G:0.02, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:9818648 original size:5 final size:5
Alignment explanation
Indices: 9818638--9818753 Score: 55
Period size: 5 Copynumber: 23.2 Consensus size: 5
9818628 GAAGCAGAAT
* **
9818638 AATAA AATAA AATAA AAT-A AAGAA AATAA TAATTTT AATAA GAAT-A
1 AATAA AATAA AATAA AATAA AATAA AATAA -AA-TAA AATAA -AATAA
* * * * *
9818684 AATAG AA-AA TATAA AATAA CAA-AC AA-AA GATAA TAATAA GA-AA AATAA
1 AATAA AATAA AATAA AATAA -AATAA AATAA AATAA -AATAA AATAA AATAA
*
9818732 AGTAA AATAA AATAAA AATAA A
1 AATAA AATAA AAT-AA AATAA A
9818754 GAATTAAAAT
Statistics
Matches: 82, Mismatches: 18, Indels: 22
0.67 0.15 0.18
Matches are distributed among these distances:
4 15 0.18
5 48 0.59
6 18 0.22
7 1 0.01
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:9822599 original size:12 final size:12
Alignment explanation
Indices: 9822560--9822601 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
9822550 AAATAAAAGA
9822560 AAAATTAGAAAAT
1 AAAATTA-AAAAT
*
9822573 AAAAATT-AAACT
1 -AAAATTAAAAAT
9822585 AAAATTAAAAAT
1 AAAATTAAAAAT
9822597 AAAAT
1 AAAAT
9822602 GCAATAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
11 6 0.24
12 13 0.52
14 6 0.24
ACGTcount: A:0.71, C:0.02, G:0.02, T:0.24
Consensus pattern (12 bp):
AAAATTAAAAAT
Found at i:9829781 original size:33 final size:33
Alignment explanation
Indices: 9829735--9829817 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
9829725 GGTGTGGCCA
*
9829735 TGTGGG-CCACACAGGCTACGAAAAATTGGGCG
1 TGTGGGCCCACACAGGCAACGAAAAATTGGGCG
* * ** *
9829767 TGTGGGCCCACACAGACAAGGCCAATTTGGGCG
1 TGTGGGCCCACACAGGCAACGAAAAATTGGGCG
9829800 TGTGGGCCCACACAGGCA
1 TGTGGGCCCACACAGGCA
9829818 TGTAGGCCCA
Statistics
Matches: 43, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 6 0.14
33 37 0.86
ACGTcount: A:0.25, C:0.27, G:0.34, T:0.14
Consensus pattern (33 bp):
TGTGGGCCCACACAGGCAACGAAAAATTGGGCG
Found at i:9840073 original size:20 final size:21
Alignment explanation
Indices: 9840039--9840092 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
9840029 TGATGATATT
*
9840039 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
9840060 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
9840080 TTTTATTATTTTA
1 TTATATTATTTTA
9840093 TTATTATTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:9840096 original size:3 final size:3
Alignment explanation
Indices: 9840078--9840126 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
9840068 TTTAATGAGA
*
9840078 TAT T-T TAT TAT T-T TAT TAT TAT T-T CAT TAT TAT T-T TAT TAT TAAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-AT
9840123 TAT T
1 TAT T
9840127 TAGTATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
2 7 0.18
3 29 0.74
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TAT
Found at i:9840098 original size:11 final size:11
Alignment explanation
Indices: 9840082--9840120 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
9840072 ATGAGATATT
9840082 TTATTATTTTA
1 TTATTATTTTA
*
9840093 TTATTATTTCA
1 TTATTATTTTA
9840104 TTATTATTTTA
1 TTATTATTTTA
9840115 TTATTA
1 TTATTA
9840121 ATTATTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (11 bp):
TTATTATTTTA
Found at i:9840106 original size:19 final size:19
Alignment explanation
Indices: 9840078--9840119 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
9840068 TTTAATGAGA
*
9840078 TATTTTATTATT-TTATTAT
1 TATTTCATTATTATT-TTAT
9840097 TATTTCATTATTATTTTAT
1 TATTTCATTATTATTTTAT
9840116 TATT
1 TATT
9840120 AATTATTTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 19 0.90
20 2 0.10
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.71
Consensus pattern (19 bp):
TATTTCATTATTATTTTAT
Found at i:9842384 original size:23 final size:22
Alignment explanation
Indices: 9842273--9842385 Score: 86
Period size: 23 Copynumber: 4.8 Consensus size: 22
9842263 CCCTATATAT
9842273 GGCTCTTCGTGAGCTTCCCGATA
1 GGCTCTTC-TGAGCTTCCCGATA
* *
9842296 GGCTTTTTATGAGCTTCCCGATA
1 GGC-TCTTCTGAGCTTCCCGATA
*
9842319 GTGCTCCTT-TGAACTTCCCGATATA
1 G-GCT-CTTCTGAGCTTCCCG--ATA
* *
9842344 TGACT-ATCTGGAGCTTCCCGATA
1 -GGCTCTTCT-GAGCTTCCCGATA
9842367 GGCTCTTCGTGAGCTTCCC
1 GGCTCTTC-TGAGCTTCCC
9842386 AATATGGTTC
Statistics
Matches: 71, Mismatches: 9, Indels: 20
0.71 0.09 0.20
Matches are distributed among these distances:
22 3 0.04
23 44 0.62
24 9 0.13
25 14 0.20
26 1 0.01
ACGTcount: A:0.16, C:0.28, G:0.22, T:0.34
Consensus pattern (22 bp):
GGCTCTTCTGAGCTTCCCGATA
Found at i:9842384 original size:48 final size:48
Alignment explanation
Indices: 9842273--9842390 Score: 120
Period size: 48 Copynumber: 2.5 Consensus size: 48
9842263 CCCTATATAT
* * * *
9842273 GGCTCTTCGTGAGCTTCCCG--ATAGGCTTTTTATGAGCTTCCCGATA
1 GGCTCTTCGTGAGCTTCCCGATATAGACTATCTAGGAGCTTCCCGATA
*
9842319 GTGCTCCTT--TGAACTTCCCGATATATGACTATCT-GGAGCTTCCCGATA
1 G-GCT-CTTCGTGAGCTTCCCGATATA-GACTATCTAGGAGCTTCCCGATA
*
9842367 GGCTCTTCGTGAGCTTCCCAATAT
1 GGCTCTTCGTGAGCTTCCCGATAT
9842391 GGTTCTTTGT
Statistics
Matches: 58, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
46 14 0.24
47 6 0.10
48 33 0.57
49 5 0.09
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (48 bp):
GGCTCTTCGTGAGCTTCCCGATATAGACTATCTAGGAGCTTCCCGATA
Found at i:9856768 original size:17 final size:17
Alignment explanation
Indices: 9856746--9856778 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
9856736 CCAATTTTAT
9856746 TTATATT-TATATATATA
1 TTATATTCTAT-TATATA
9856763 TTATATTCTATTATAT
1 TTATATTCTATTATAT
9856779 TTTTTATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATATTCTATTATATA
Found at i:9863172 original size:21 final size:21
Alignment explanation
Indices: 9863137--9863177 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
9863127 ATATAAGCCC
**
9863137 TATATTTTATTTATTAATTTT
1 TATATTTTAGGTATTAATTTT
*
9863158 TATATTTTAGGTATTTATTT
1 TATATTTTAGGTATTAATTT
9863178 CGAATTTTAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.05, T:0.68
Consensus pattern (21 bp):
TATATTTTAGGTATTAATTTT
Found at i:9864795 original size:21 final size:19
Alignment explanation
Indices: 9864744--9864795 Score: 52
Period size: 21 Copynumber: 2.6 Consensus size: 19
9864734 ATTATTTCAA
9864744 AAATAA-AGAAATAAATAT
1 AAATAATAGAAATAAATAT
* *
9864762 AATAAAATGGAAATAAAATATT
1 AA-ATAATAGAAAT-AAATA-T
9864784 AAATAATAGAAA
1 AAATAATAGAAA
9864796 ATCGAGATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
18 2 0.08
19 3 0.12
20 5 0.19
21 13 0.50
22 3 0.12
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.23
Consensus pattern (19 bp):
AAATAATAGAAATAAATAT
Found at i:9872111 original size:12 final size:12
Alignment explanation
Indices: 9872079--9872105 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
9872069 AATAAAAGCG
9872079 TATAAACAACAA
1 TATAAACAACAA
9872091 TATAAACAACAA
1 TATAAACAACAA
9872103 TAT
1 TAT
9872106 GTACAAGGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.63, C:0.15, G:0.00, T:0.22
Consensus pattern (12 bp):
TATAAACAACAA
Found at i:9872500 original size:3 final size:3
Alignment explanation
Indices: 9872492--9872524 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
9872482 ATACTAGTAC
*
9872492 TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
9872525 ATATATGCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:9872504 original size:15 final size:15
Alignment explanation
Indices: 9872481--9872524 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
9872471 AATGAAAATC
* *
9872481 AATACTAGTACTAAT
1 AATAATAGTAATAAT
9872496 AATAATAGTAATAAT
1 AATAATAGTAATAAT
*
9872511 AATAATAATAATAA
1 AATAATAGTAATAA
9872525 ATATATGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (15 bp):
AATAATAGTAATAAT
Found at i:9872599 original size:13 final size:13
Alignment explanation
Indices: 9872583--9872621 Score: 60
Period size: 15 Copynumber: 2.8 Consensus size: 13
9872573 GATATAATAT
9872583 AATAATATATAAA
1 AATAATATATAAA
9872596 AATAATAGTGATAAA
1 AATAATA-T-ATAAA
9872611 AATAATATATA
1 AATAATATATA
9872622 TATCATGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
13 10 0.42
14 2 0.08
15 12 0.50
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (13 bp):
AATAATATATAAA
Found at i:9874462 original size:15 final size:15
Alignment explanation
Indices: 9874438--9874470 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
9874428 TTGATCTTTG
*
9874438 AAAAATATAAATTGA
1 AAAAACATAAATTGA
9874453 AAAAACATAAATTGA
1 AAAAACATAAATTGA
9874468 AAA
1 AAA
9874471 TACCTCAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.06, T:0.21
Consensus pattern (15 bp):
AAAAACATAAATTGA
Found at i:9874680 original size:77 final size:77
Alignment explanation
Indices: 9874461--9874668 Score: 364
Period size: 77 Copynumber: 2.7 Consensus size: 77
9874451 GAAAAAACAT
* *
9874461 AAATTGAAAATACCTCAGCATGTGAACC-GAGGCTTAACTCACCTCTCGCAATATAAGTTGGTTT
1 AAATTGAAAATACCTCAGCA--TG-CCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGGTTT
9874525 TTTTTTGAAAAGCGG
63 TTTTTTGAAAAGCGG
9874540 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGGTTTTTT
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGGTTTTTT
9874605 TTTGAAAAGCGG
66 TTTGAAAAGCGG
9874617 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATAT
1 AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATAT
9874669 GAGCTAATTT
Statistics
Matches: 126, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
76 2 0.02
77 104 0.83
79 20 0.16
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.28
Consensus pattern (77 bp):
AAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATAAGTTGGTTTTTT
TTTGAAAAGCGG
Found at i:9874768 original size:89 final size:86
Alignment explanation
Indices: 9874616--9874869 Score: 330
Period size: 89 Copynumber: 2.9 Consensus size: 86
9874606 TTGAAAAGCG
* * * *
9874616 GAAATTGAAAATACCTCAGCATGCCCTGAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTTT
1 GAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTT
* *
9874681 GAAAAACATAAATTGGAGAACACA
66 GAAAAACAGAAATT--A-AAAACA
*
9874705 GAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTT
1 GAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTT
*
9874770 GAAAAACAGAAATTAAAAATA
66 GAAAAACAGAAATTAAAAACA
* * *
9874791 GAAATTGAAAAAACCTCGGCATGTGAGCTGAGGCTCAACTCACCTCTCGC-GATATGAGTTGATT
1 GAAATTGAAAATACCTCAGCATGT--CCTGAGGCTCAACTCACCTCTCGCAG-TATGAGTTGA-T
*
9874855 TTTTGACAAACAGAA
62 TTTTGAAAAACAGAA
9874870 GTTGAAATTA
Statistics
Matches: 148, Mismatches: 13, Indels: 8
0.88 0.08 0.05
Matches are distributed among these distances:
86 25 0.17
87 2 0.01
88 33 0.22
89 88 0.59
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (86 bp):
GAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAGTATGAGTTGATTTTT
GAAAAACAGAAATTAAAAACA
Found at i:9874793 original size:13 final size:14
Alignment explanation
Indices: 9874768--9874802 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
9874758 GAGTTGATTT
9874768 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
*
9874782 TT-AAAAATAGAAA
1 TTGAAAAACAGAAA
9874795 TTGAAAAA
1 TTGAAAAA
9874803 ACCTCGGCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.66, C:0.03, G:0.11, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:9875049 original size:75 final size:72
Alignment explanation
Indices: 9874785--9875242 Score: 501
Period size: 75 Copynumber: 6.2 Consensus size: 72
9874775 ACAGAAATTA
* * * ** *
9874785 AAAATAGAAATTGAAAAAACCTCGGCATGTGAGCTGAGGCTCAACTCACCTCTCGCGATATGAGT
1 AAAACAGAAATTGAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
9874850 TGATTTTTTG
64 TGA-TTTTTG
* *
9874860 ACAAACAGAAGTTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 A-AAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
9874925 GATTTTCG
65 GATTTTTG
* *
9874933 AAAAC-GAAAATCAAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
9874997 GATTATTTTG
65 GA-T-TTTTG
* * * * *
9875007 AAAGACAGAAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTT
1 AAA-ACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
9875072 GAATTTTG
65 GATTTTTG
* * ** *
9875080 -AAACAGAAA-TAAAAATTATCTCAGCGTGTCCCAAAGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAACAGAAATTGAAAA-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
9875143 GATTTTTTTG
65 GA--TTTTTG
* * * * * * *
9875153 ACAAACA-ATAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAATTAACCTATAGCAATATGAAT
1 A-AAACAGA-AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
9875217 TGATTTTTG
64 TGATTTTTG
*
9875226 AAAACATAAATTGAAAA
1 AAAACAGAAATTGAAAA
9875243 ACAGAAATCG
Statistics
Matches: 326, Mismatches: 43, Indels: 31
0.81 0.11 0.08
Matches are distributed among these distances:
70 5 0.02
71 54 0.17
72 69 0.21
73 25 0.08
74 45 0.14
75 94 0.29
76 34 0.10
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (72 bp):
AAAACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG
ATTTTTG
Found at i:9875119 original size:146 final size:146
Alignment explanation
Indices: 9874823--9875230 Score: 538
Period size: 146 Copynumber: 2.8 Consensus size: 146
9874813 GTGAGCTGAG
* * *
9874823 GCTCAACTCACCTCTCGCGATATGAGTTGATTTTTTGACAAACAGAAGTTGAAATTACCTCAGCG
1 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
*
9874888 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCGAAAACGAAAATCAAAATTAC
66 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCGAAAACGAAAATAAAAATTAC
** *
9874953 CTCAGCGTGTCCTGAG
131 CTCAGCGTGTCCCAAA
*
9874969 GCTCAACTCACCTCTCGCAATATGAGTTGATTATTTTGA-AAGACAGAAATTGAAAATACCTCAA
1 GCTCAACTCACCTCTCGCAATATGAGTTGATT-TTTTGACAA-ACAGAAATTGAAAATACCTCAG
* * * *
9875033 CGTGTCTTGAGGCTCAACTCACTTCTTGCAGTATGAGTTGAATTTT-G-AAAC-AGAAATAAAAA
64 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTCGAAAACGA-AAATAAAAA
*
9875095 TTATCTCAGCGTGTCCCAAA
127 TTACCTCAGCGTGTCCCAAA
9875115 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGACAAACA-ATAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTGACAAACAGA-AATTGAAAATACCTCAG
* * * * * * * *
9875179 CGTGCCCCGAGGCTCAATTAACCTATAGCAATATGAATTGATTTTTGAAAAC
64 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCGAAAAC
9875231 ATAAATTGAA
Statistics
Matches: 229, Mismatches: 24, Indels: 17
0.85 0.09 0.06
Matches are distributed among these distances:
145 7 0.03
146 147 0.64
147 70 0.31
148 5 0.02
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (146 bp):
GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGACAAACAGAAATTGAAAATACCTCAGCG
TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTCGAAAACGAAAATAAAAATTAC
CTCAGCGTGTCCCAAA
Found at i:9887114 original size:27 final size:28
Alignment explanation
Indices: 9887048--9887139 Score: 98
Period size: 27 Copynumber: 3.2 Consensus size: 28
9887038 CGTACATACT
*
9887048 ATATATATACATATAATATAGTTATTAAGA
1 ATATATATACA-AT-ATATAGATATTAAGA
* *
9887078 AAATACATACAATATATA-ATATTAAGA
1 ATATATATACAATATATAGATATTAAGA
* *
9887105 ATATATATACAATACATATGGTATTAAGA
1 ATATATATACAATATATA-GATATTAAGA
9887134 A-ATATA
1 ATATATA
9887140 GTATTATAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
27 23 0.43
28 10 0.19
29 11 0.21
30 9 0.17
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (28 bp):
ATATATATACAATATATAGATATTAAGA
Found at i:9887559 original size:20 final size:21
Alignment explanation
Indices: 9887511--9887556 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
9887501 AGTATTAGAA
*
9887511 AAAAATATACTTGATATATAT
1 AAAAATATACTTAATATATAT
9887532 AAAAATATACTTAATA-ATAAT
1 AAAAATATACTTAATATAT-AT
9887553 AAAA
1 AAAA
9887557 TATTATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.61, C:0.04, G:0.02, T:0.33
Consensus pattern (21 bp):
AAAAATATACTTAATATATAT
Found at i:9892502 original size:17 final size:17
Alignment explanation
Indices: 9892480--9892512 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
9892470 CATCTCGCAT
*
9892480 TTTATTTCTTTTATTAC
1 TTTATTTATTTTATTAC
9892497 TTTATTTATTTTATTA
1 TTTATTTATTTTATTA
9892513 TTAATATCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTATTTATTTTATTAC
Done.