Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 36 of 186
Found at i:10828786 original size:9 final size:8
Alignment explanation
Indices: 10828764--10828788 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
10828754 AGTAAATATT
10828764 AATTTTTA
1 AATTTTTA
10828772 AATTTTTA
1 AATTTTTA
10828780 AATTTTTA
1 AATTTTTA
10828788 A
1 A
10828789 TCTTATTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (8 bp):
AATTTTTA
Found at i:10828916 original size:27 final size:27
Alignment explanation
Indices: 10828855--10828916 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 27
10828845 TGATAATTTG
* * *
10828855 AATATTTTAAAAAACATAATTTATTTC
1 AATATTTTAAAAAACAAAATTGACTTC
* *
10828882 AATTTTTTAATAAAATAAAATTGACTT-
1 AATATTTTAA-AAAACAAAATTGACTTC
10828909 AATATTTT
1 AATATTTT
10828917 CTACATTAAC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
27 16 0.57
28 12 0.43
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.47
Consensus pattern (27 bp):
AATATTTTAAAAAACAAAATTGACTTC
Found at i:10842474 original size:33 final size:33
Alignment explanation
Indices: 10842436--10842501 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
10842426 TAATATTGAG
* *
10842436 TTTGAATATGCTCTCATACATATACCCTTTCCC
1 TTTGAACATACTCTCATACATATACCCTTTCCC
10842469 TTTGAACATACTCTCATACATATACCCTTTCCC
1 TTTGAACATACTCTCATACATATACCCTTTCCC
10842502 CACAAAAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.26, C:0.32, G:0.05, T:0.38
Consensus pattern (33 bp):
TTTGAACATACTCTCATACATATACCCTTTCCC
Found at i:10848182 original size:46 final size:46
Alignment explanation
Indices: 10848122--10849039 Score: 1739
Period size: 46 Copynumber: 20.0 Consensus size: 46
10848112 TTTGACATGA
* * * ** * *
10848122 TGCCATAGTGTCTTTCAACTATGGTCTTACTTATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
*
10848168 TGCCATGGTATCTTTCAACCATGATCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848214 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848260 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848306 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848352 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848398 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848444 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848490 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848536 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848582 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848628 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848674 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848720 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848766 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848812 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848858 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848904 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
10848950 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
*
10848996 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATTTCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
10849040 AGAGCACACT
Statistics
Matches: 861, Mismatches: 10, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
45 4 0.00
46 857 1.00
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:10851532 original size:30 final size:30
Alignment explanation
Indices: 10851465--10851532 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
10851455 CACCCTTAAA
* * *
10851465 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
10851495 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
10851524 AGTATTTAC
1 A-TATTTAC
10851533 TCTTGGTCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:10853393 original size:22 final size:22
Alignment explanation
Indices: 10853368--10853413 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
10853358 TAGTCCAACT
*
10853368 ATGGTTTTACACAT-ATAATGCC
1 ATGGTCTTACA-ATCATAATGCC
*
10853390 ATGGTCTTACATTCATAATGCC
1 ATGGTCTTACAATCATAATGCC
10853412 AT
1 AT
10853414 AACCCGGTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (22 bp):
ATGGTCTTACAATCATAATGCC
Found at i:10853459 original size:33 final size:33
Alignment explanation
Indices: 10853390--10853467 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
10853380 ATATAATGCC
* * *
10853390 ATGGTCTTACATTCATAATGCCATAACCCGGTT
1 ATGGTCTTACATTCAGAATGCCATAACCCAGCT
**
10853423 ATGGTCTTATCATT-AGAATGCCATGGCCCAGCT
1 ATGGTCTTA-CATTCAGAATGCCATAACCCAGCT
*
10853456 ATGGTTTTACAT
1 ATGGTCTTACAT
10853468 ACTAATATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
32 3 0.08
33 31 0.82
34 4 0.11
ACGTcount: A:0.26, C:0.22, G:0.18, T:0.35
Consensus pattern (33 bp):
ATGGTCTTACATTCAGAATGCCATAACCCAGCT
Found at i:10861275 original size:13 final size:13
Alignment explanation
Indices: 10861257--10861282 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
10861247 AAGTAATCGA
10861257 ACACGGGCGTGTC
1 ACACGGGCGTGTC
10861270 ACACGGGCGTGTC
1 ACACGGGCGTGTC
10861283 CCTGCCGAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.38, T:0.15
Consensus pattern (13 bp):
ACACGGGCGTGTC
Found at i:10865655 original size:17 final size:17
Alignment explanation
Indices: 10865635--10865672 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
10865625 ATTTCTTTTA
10865635 TTTTTAAGATTCATTCG
1 TTTTTAAGATTCATTCG
*
10865652 TTTTTAAGATTCATTTG
1 TTTTTAAGATTCATTCG
10865669 TTTT
1 TTTT
10865673 CTTTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.21, C:0.08, G:0.11, T:0.61
Consensus pattern (17 bp):
TTTTTAAGATTCATTCG
Found at i:10876823 original size:12 final size:13
Alignment explanation
Indices: 10876798--10876826 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10876788 AAAAAGGGAA
10876798 AAAAATTAGTAAT
1 AAAAATTAGTAAT
10876811 AAAAATTAG-AAT
1 AAAAATTAGTAAT
10876823 AAAA
1 AAAA
10876827 TTTAAATTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.69, C:0.00, G:0.07, T:0.24
Consensus pattern (13 bp):
AAAAATTAGTAAT
Found at i:10888498 original size:15 final size:15
Alignment explanation
Indices: 10888478--10888506 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
10888468 TATGCATGTA
10888478 AAATATAAAAGACAG
1 AAATATAAAAGACAG
10888493 AAATATAAAAGACA
1 AAATATAAAAGACA
10888507 TAACAGTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.07, G:0.10, T:0.14
Consensus pattern (15 bp):
AAATATAAAAGACAG
Found at i:10890232 original size:22 final size:22
Alignment explanation
Indices: 10890193--10890235 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
10890183 AGCAAAATAA
*
10890193 TAGCGAAATGATAATAAAACAG
1 TAGCGAAATGACAATAAAACAG
* *
10890215 TAGCGAAATGGCAGTAAAACA
1 TAGCGAAATGACAATAAAACA
10890236 AAAAAAAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.12, G:0.21, T:0.16
Consensus pattern (22 bp):
TAGCGAAATGACAATAAAACAG
Found at i:10895414 original size:13 final size:13
Alignment explanation
Indices: 10895396--10895420 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
10895386 CTTTATATTT
10895396 TTTTAAAATTATA
1 TTTTAAAATTATA
10895409 TTTTAAAATTAT
1 TTTTAAAATTAT
10895421 TAATAATATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTAAAATTATA
Found at i:10895451 original size:19 final size:20
Alignment explanation
Indices: 10895427--10895465 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10895417 TTATTAATAA
*
10895427 TATAAAT-TTTTAGAATTTT
1 TATAAATATTTTAAAATTTT
10895446 TATAAATATTTTAAAATTTT
1 TATAAATATTTTAAAATTTT
10895466 AAAATTAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (20 bp):
TATAAATATTTTAAAATTTT
Found at i:10895462 original size:10 final size:9
Alignment explanation
Indices: 10895430--10895471 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
10895420 TTAATAATAT
10895430 AAATTTTTA
1 AAATTTTTA
*
10895439 GAATTTTTA
1 AAATTTTTA
10895448 TAAATATTTTA
1 -AAAT-TTTTA
10895459 AAA-TTTTA
1 AAATTTTTA
10895467 AAATT
1 AAATT
10895472 AGTTTGATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
8 8 0.29
9 9 0.32
10 6 0.21
11 5 0.18
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (9 bp):
AAATTTTTA
Found at i:10895466 original size:19 final size:19
Alignment explanation
Indices: 10895427--10895471 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 19
10895417 TTATTAATAA
*
10895427 TATAAATTTTTAGAATTTT
1 TATAAATTTTTAGAAATTT
10895446 TATAAATATTTTA-AAATTT
1 TATAAAT-TTTTAGAAATTT
10895465 TA-AAATT
1 TATAAATT
10895472 AGTTTGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 1 0.04
18 4 0.17
19 14 0.58
20 5 0.21
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
TATAAATTTTTAGAAATTT
Found at i:10900545 original size:12 final size:12
Alignment explanation
Indices: 10900528--10900552 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10900518 CCTACCTATA
10900528 CTACTCTTTAAG
1 CTACTCTTTAAG
10900540 CTACTCTTTAAG
1 CTACTCTTTAAG
10900552 C
1 C
10900553 CATAGCAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.28, G:0.08, T:0.40
Consensus pattern (12 bp):
CTACTCTTTAAG
Found at i:10908008 original size:4 final size:4
Alignment explanation
Indices: 10907999--10908075 Score: 64
Period size: 4 Copynumber: 18.8 Consensus size: 4
10907989 CCCTTTTCTA
** * * * **
10907999 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TCAC GTTTGC TCTC TGTA ACTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC -TTT-C TTTC TTTC TTTC
*
10908049 TTTC TATC TTTC TTTC TTTC TTTC TTT
1 TTTC TTTC TTTC TTTC TTTC TTTC TTT
10908076 TTTTTAACTT
Statistics
Matches: 57, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
4 53 0.93
5 3 0.05
6 1 0.02
ACGTcount: A:0.05, C:0.26, G:0.04, T:0.65
Consensus pattern (4 bp):
TTTC
Found at i:10914889 original size:4 final size:4
Alignment explanation
Indices: 10914876--10914956 Score: 65
Period size: 4 Copynumber: 20.0 Consensus size: 4
10914866 TCAAATTTCC
** * * ***
10914876 CTTT -TTT CTTT CTTT CTTT CTTT CTTT CTCA CGTTT GCTCT CTGT AACT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C-TTT -CTTT CTTT CTTT
*
10914925 CTTT CTAT CTTT CTTT CTTT CTTT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT
10914957 TTAACTTACT
Statistics
Matches: 60, Mismatches: 14, Indels: 6
0.75 0.17 0.08
Matches are distributed among these distances:
3 3 0.05
4 53 0.88
5 3 0.05
6 1 0.02
ACGTcount: A:0.05, C:0.26, G:0.04, T:0.65
Consensus pattern (4 bp):
CTTT
Found at i:10925157 original size:7 final size:7
Alignment explanation
Indices: 10925145--10925171 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
10925135 AGAAAGAGAA
10925145 AAAAAAG
1 AAAAAAG
10925152 AAAAAAG
1 AAAAAAG
10925159 AAAAAAG
1 AAAAAAG
10925166 AAAAAA
1 AAAAAA
10925172 CTAAAAAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Found at i:10925171 original size:16 final size:17
Alignment explanation
Indices: 10925131--10925164 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
10925121 GAGGAGAAGG
*
10925131 AAAGAGAAAGAGAAAAA
1 AAAGAGAAAAAGAAAAA
10925148 AAAGA-AAAAAGAAAAA
1 AAAGAGAAAAAGAAAAA
10925164 A
1 A
10925165 GAAAAAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (17 bp):
AAAGAGAAAAAGAAAAA
Found at i:10925177 original size:14 final size:14
Alignment explanation
Indices: 10925145--10925179 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
10925135 AGAAAGAGAA
*
10925145 AAAAAAGAAAAAAG
1 AAAAAAGAAAAAAC
10925159 AAAAAAGAAAAAAC
1 AAAAAAGAAAAAAC
10925173 TAAAAAA
1 -AAAAAA
10925180 CATTTGTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.86, C:0.03, G:0.09, T:0.03
Consensus pattern (14 bp):
AAAAAAGAAAAAAC
Found at i:10926843 original size:20 final size:20
Alignment explanation
Indices: 10926814--10926857 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
10926804 ACATAGTAAG
*
10926814 TTGATTAGTGATAAGGTATA
1 TTGATCAGTGATAAGGTATA
* *
10926834 TTGATCAGTGATATGGTATG
1 TTGATCAGTGATAAGGTATA
10926854 TTGA
1 TTGA
10926858 CTAAGTTGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.30, C:0.02, G:0.27, T:0.41
Consensus pattern (20 bp):
TTGATCAGTGATAAGGTATA
Found at i:10934001 original size:16 final size:17
Alignment explanation
Indices: 10933976--10934025 Score: 59
Period size: 16 Copynumber: 3.1 Consensus size: 17
10933966 TTTTCTTACT
10933976 TTAT-TAAATTATTATA
1 TTATATAAATTATTATA
*
10933992 TTATAT-AATTATTATT
1 TTATATAAATTATTATA
* *
10934008 TTATTTAAATTATAATA
1 TTATATAAATTATTATA
10934025 T
1 T
10934026 GAATTATAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 18 0.64
17 10 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTATATAAATTATTATA
Found at i:10940920 original size:26 final size:26
Alignment explanation
Indices: 10940842--10941023 Score: 237
Period size: 26 Copynumber: 7.2 Consensus size: 26
10940832 GCCTAGCCTA
10940842 TTTT-AAT-AACTAGGGCA-AAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCC
** *
10940865 TTTTCGGTAAACTGGGGCA-AAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCC
10940890 TTTTCAATAAACTAGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCC
** *
10940916 TTTTCGGTAAACTAGGGCATAAGACC
1 TTTTCAATAAACTAGGGCATAAGCCC
10940942 TTTTCAATAAACTAGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCC
** *
10940968 TTTTCGGTAAACTGGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCC
* *
10940994 TTTTCAATAAATTGGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCC
10941020 TTTT
1 TTTT
10941024 GCACTTCCTC
Statistics
Matches: 138, Mismatches: 18, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
23 4 0.03
24 1 0.01
25 31 0.22
26 102 0.74
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (26 bp):
TTTTCAATAAACTAGGGCATAAGCCC
Found at i:10940963 original size:52 final size:52
Alignment explanation
Indices: 10940842--10941023 Score: 300
Period size: 52 Copynumber: 3.6 Consensus size: 52
10940832 GCCTAGCCTA
10940842 TTTT-AAT-AACTAGGGCA-AAGCCCTTTTCGGTAAACTGGGGCA-AAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
* *
10940890 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTAGGGCATAAGACC
1 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
10940942 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
1 TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
* *
10940994 TTTTCAATAAATTGGGGCATAAGCCCTTTT
1 TTTTCAATAAACTAGGGCATAAGCCCTTTT
10941024 GCACTTCCTC
Statistics
Matches: 124, Mismatches: 6, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
48 4 0.03
49 3 0.02
50 10 0.08
51 24 0.19
52 83 0.67
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (52 bp):
TTTTCAATAAACTAGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCC
Found at i:10941884 original size:27 final size:27
Alignment explanation
Indices: 10941807--10941886 Score: 78
Period size: 27 Copynumber: 3.0 Consensus size: 27
10941797 TCATGCGGAA
10941807 CATA-AGGGCATATT-C-GTCATTTTAC
1 CATACAGGGC-TATTACGGTCATTTTAC
* *
10941832 CATACAGGGGTATTACGGTCACTTTAC
1 CATACAGGGCTATTACGGTCATTTTAC
* *
10941859 CCTACAGGGACT-TTACGGTCTTTTTAC
1 CATACAGGG-CTATTACGGTCATTTTAC
10941886 C
1 C
10941887 TAATAGGGGT
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
25 8 0.18
26 5 0.11
27 31 0.69
28 1 0.02
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.34
Consensus pattern (27 bp):
CATACAGGGCTATTACGGTCATTTTAC
Found at i:10941970 original size:27 final size:27
Alignment explanation
Indices: 10941944--10942396 Score: 161
Period size: 27 Copynumber: 16.7 Consensus size: 27
10941934 ATCTACAAAC
* *
10941944 CAAGGGTATTTCAGTAATTTTGTAAAC
1 CAAGGGTATTTCAGTAATTTTATAAAT
** * *
10941971 CAATAGAATTTCCA-TAATTTTTAGAAAGT
1 CAAGGGTATTT-CAGTAA-TTTTATAAA-T
* *
10942000 CAAGGGTATTTCTA-TAACTTTGTAAAT
1 CAAGGGTATTTC-AGTAATTTTATAAAT
* *
10942027 CAAGGGTATTTTAGTAATTTTACAAATT
1 CAAGGGTATTTCAGTAATTTTATAAA-T
* * * *
10942055 GAA-GGTATTTCGGTAATTTCACAAA-
1 CAAGGGTATTTCAGTAATTTTATAAAT
* **
10942080 CCAGTGGTATTTTGGTAATTTTATAAA-
1 CAAG-GGTATTTCAGTAATTTTATAAAT
* ** * *
10942107 CTAGGGTTATTTTGGTAAATTTACAAAT
1 CAAGGG-TATTTCAGTAATTTTATAAAT
** * * * *
10942135 TGAGGGTATTCCTGTAATTTTACAAAC
1 CAAGGGTATTTCAGTAATTTTATAAAT
* * *
10942162 CAAGGGTATTTTAGCAATTTTACAAA-
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** *
10942188 CTAGGGTATTTTGGTAATTTTACT-GAT
1 CAAGGGTATTTCAGTAATTTTA-TAAAT
* * * *
10942215 CGAGGGTATTT-TGTTAATTTTGTAAAC
1 CAAGGGTATTTCAG-TAATTTTATAAAT
* * *
10942242 CGAGGGTATTTTAGTAATTTTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* *** * *
10942269 CGAGGGTAAAACAGTAATTCTGTAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
*** *
10942296 CAAGGGTAAAACAGTAATTCTATAAAT
1 CAAGGGTATTTCAGTAATTTTATAAAT
* ** * *
10942323 CGAGGGTAAAAT-GGTAATTCTATAAAT
1 CAAGGGT-ATTTCAGTAATTTTATAAAT
* * * *
10942350 CGAGGGTACTTT-GGTAATTTTACAATT
1 CAAGGGTA-TTTCAGTAATTTTATAAAT
** *
10942377 TGAGGGTATTTCAATAATTT
1 CAAGGGTATTTCAGTAATTT
10942397 GGTAAACTAA
Statistics
Matches: 337, Mismatches: 71, Indels: 36
0.76 0.16 0.08
Matches are distributed among these distances:
25 1 0.00
26 29 0.09
27 268 0.80
28 27 0.08
29 12 0.04
ACGTcount: A:0.34, C:0.09, G:0.19, T:0.38
Consensus pattern (27 bp):
CAAGGGTATTTCAGTAATTTTATAAAT
Found at i:10942089 original size:54 final size:53
Alignment explanation
Indices: 10942029--10942276 Score: 196
Period size: 54 Copynumber: 4.6 Consensus size: 53
10942019 TTGTAAATCA
* * *
10942029 AGGGTATTTTAGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAACC
1 AGGGTATTTTAGTAATTTTACAAATCGAAGGTATTTTGGTAATTTTACAAACC
* * * * * **
10942082 AGTGGTATTTTGGTAATTTTATAAA-CTAGGGTTATTTTGGTAAATTTACAAATTG
1 AG-GGTATTTTAGTAATTTTACAAATCGAAGG-TATTTTGGTAATTTTACAAA-CC
* * * * *
10942137 AGGGTATTCCT-GTAATTTTACAAA-CCAAGGGTATTTTAGCAATTTTACAAACT
1 AGGGTATT-TTAGTAATTTTACAAATCGAA-GGTATTTTGGTAATTTTACAAACC
* ** * * **
10942190 AGGGTATTTTGGTAATTTTACTGATCGAGGGTATTTTGTTAATTTTGTAAACC
1 AGGGTATTTTAGTAATTTTACAAATCGAAGGTATTTTGGTAATTTTACAAACC
** *
10942243 GAGGGTATTTTAGTAATTTTGTAAATCGAGGGTA
1 -AGGGTATTTTAGTAATTTTACAAATCGAAGGTA
10942277 AAACAGTAAT
Statistics
Matches: 152, Mismatches: 35, Indels: 15
0.75 0.17 0.07
Matches are distributed among these distances:
52 1 0.01
53 42 0.28
54 104 0.68
55 5 0.03
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (53 bp):
AGGGTATTTTAGTAATTTTACAAATCGAAGGTATTTTGGTAATTTTACAAACC
Found at i:10942130 original size:81 final size:80
Alignment explanation
Indices: 10942029--10942210 Score: 258
Period size: 81 Copynumber: 2.3 Consensus size: 80
10942019 TTGTAAATCA
* *
10942029 AGGGTATTTTAGTAATTTTACAAATTGAAGGTATTTCGGTAATTTCACAAACC-AGTGGTATTTT
1 AGGGTATTTTGGTAATTTTACAAATTGAAGGTATTCCGGTAATTTCACAAACCAAG-GGTATTTT
* * *
10942093 GGTAATTTTATAAACT
65 AGCAATTTTACAAACT
* * * *
10942109 AGGGTTATTTTGGTAAATTTACAAATTGAGGGTATTCCTGTAATTTTACAAACCAAGGGTATTTT
1 AGGG-TATTTTGGTAATTTTACAAATTGAAGGTATTCCGGTAATTTCACAAACCAAGGGTATTTT
10942174 AGCAATTTTACAAACT
65 AGCAATTTTACAAACT
10942190 AGGGTATTTTGGTAATTTTAC
1 AGGGTATTTTGGTAATTTTAC
10942211 TGATCGAGGG
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
80 20 0.22
81 68 0.76
82 2 0.02
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.41
Consensus pattern (80 bp):
AGGGTATTTTGGTAATTTTACAAATTGAAGGTATTCCGGTAATTTCACAAACCAAGGGTATTTTA
GCAATTTTACAAACT
Found at i:10944015 original size:7 final size:7
Alignment explanation
Indices: 10944005--10944083 Score: 56
Period size: 7 Copynumber: 11.7 Consensus size: 7
10943995 GCTAACTCTT
10944005 AACCCTA
1 AACCCTA
*
10944012 AA-CCTT
1 AACCCTA
10944018 AA-C-TA
1 AACCCTA
*
10944023 AACCCCA
1 AACCCTA
*
10944030 CACCCTA
1 AACCCTA
* *
10944037 AATCTTA
1 AACCCTA
*
10944044 AACCTTA
1 AACCCTA
10944051 AACCCTA
1 AACCCTA
10944058 AACCCTA
1 AACCCTA
* *
10944065 AATCATA
1 AACCCTA
*
10944072 CACCCTA
1 AACCCTA
10944079 AACCC
1 AACCC
10944084 CTTATATATG
Statistics
Matches: 54, Mismatches: 16, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
5 3 0.06
6 7 0.13
7 44 0.81
ACGTcount: A:0.42, C:0.39, G:0.00, T:0.19
Consensus pattern (7 bp):
AACCCTA
Found at i:10944062 original size:28 final size:27
Alignment explanation
Indices: 10944005--10944084 Score: 83
Period size: 28 Copynumber: 3.0 Consensus size: 27
10943995 GCTAACTCTT
*
10944005 AACCCTAAACCTT-AA-CTAAACCCCA
1 AACCCTAAATCTTAAACCTAAACCCCA
* *
10944030 CACCCTAAATCTTAAACCTTAAACCCTA
1 AACCCTAAATCTTAAACC-TAAACCCCA
* *
10944058 AACCCTAAATCATACACCCTAAACCCC
1 AACCCTAAATCTTA-AACCTAAACCCC
10944085 TTATATATGC
Statistics
Matches: 44, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
25 11 0.25
26 2 0.05
27 1 0.02
28 27 0.61
29 3 0.07
ACGTcount: A:0.41, C:0.40, G:0.00, T:0.19
Consensus pattern (27 bp):
AACCCTAAATCTTAAACCTAAACCCCA
Found at i:10944591 original size:141 final size:141
Alignment explanation
Indices: 10944315--10945025 Score: 943
Period size: 141 Copynumber: 5.1 Consensus size: 141
10944305 AATATATATA
** * * * * * *
10944315 TCGTCTTAGGACTGGAC-AAATCCAACTATTATTTAAGTGTTGACTTAGGCATACATATACCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
* * *
10944379 CCTTATACAAAGAGTTGGCC-AAAACATA-AGTTGGCAAGTCTATCCCAACACTTAAGAAAGTGT
66 CCTTATACAAAGAGTT-GCCGAAAGCGTATA-TTGGCATGTCTATCCCAACACTTAAGAAAGTGT
10944442 CGCCACAATAGTG
129 CGCCACAATAGTG
* * *
10944455 TCGTCTTAGGACTACACAAAAGTCAACTCTTATTCAAGCATTGCCTTAGGCATACATATTCCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
* * * *
10944520 CCTTATACAAAGAGTTTCCTAAAGTGTATATTGGCATGTATATCCCAACACTTAAGAAAGTGTCG
66 CCTTATACAAAGAGTTGCCGAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCG
10944585 CCACAATAGTG
131 CCACAATAGTG
10944596 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
* *
10944661 CCTTATACAAAGAGTTGCCGAAAGCGTATATTGGCATGTCTATCCCAACACATAAGAAAGTGTCA
66 CCTTATACAAAGAGTTGCCGAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCG
*
10944726 CCAAAATAGTG
131 CCACAATAGTG
* *
10944737 TCGTCTTAGGACTACACAAAAACCAACTCTTA-TCAAGCATTGCCTTAGGCATACATATCCCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
* * * **
10944801 CCTTATACAAAGAGTTG-CGTAAAGCGTATCTTGGCATGTCTATCGCAACACTTAAAAAAACGTC
66 CCTTATACAAAGAGTTGCCG-AAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTC
*
10944865 GCCATAATAGTG
130 GCCACAATAGTG
* * * * * * *
10944877 TCATCTTAGGGCTAGAC-AAAGCCAACTCTTATTTAAGCGTTGCTTTAAGCATGCATATCCCAAC
1 TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
* * * *
10944941 CCTTATACAAAAAGTTGGCGAAAGCGTATGTTGGCCA-GTCTATCCCAACACTTAAGAAAGTGTT
66 CCTTATACAAAGAGTTGCCGAAAGCGTATATTGG-CATGTCTATCCCAACACTTAAGAAAGTGTC
*
10945005 GCC-CCATAAGTG
130 GCCACAAT-AGTG
*
10945017 TCGTATTAG
1 TCGTCTTAG
10945026 CACTGTTTTG
Statistics
Matches: 507, Mismatches: 56, Indels: 16
0.88 0.10 0.03
Matches are distributed among these distances:
139 17 0.03
140 219 0.43
141 270 0.53
142 1 0.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.27
Consensus pattern (141 bp):
TCGTCTTAGGACTACACAAAAGCCAACTCTTATTCAAGCGTTGCCTTAGGCATACATATCCCAAC
CCTTATACAAAGAGTTGCCGAAAGCGTATATTGGCATGTCTATCCCAACACTTAAGAAAGTGTCG
CCACAATAGTG
Found at i:10947755 original size:13 final size:13
Alignment explanation
Indices: 10947732--10947773 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
10947722 GCTCAGCAGG
*
10947732 GACACGCCCGTGT
1 GACACGACCGTGT
10947745 GACAC-AGCCGTGT
1 GACACGA-CCGTGT
10947758 GACACGACCGTGT
1 GACACGACCGTGT
10947771 GAC
1 GAC
10947774 GTGATTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
13 25 0.96
14 1 0.04
ACGTcount: A:0.21, C:0.33, G:0.31, T:0.14
Consensus pattern (13 bp):
GACACGACCGTGT
Found at i:10953939 original size:28 final size:28
Alignment explanation
Indices: 10953907--10954008 Score: 116
Period size: 28 Copynumber: 3.6 Consensus size: 28
10953897 TAATTATATG
** *
10953907 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* * *
10953935 TGGCACTTAGTGTGCGATA-CATCCAGAA
1 TGGCACTTAGTGTGCGA-AGTATCGAGGA
*
10953963 TGGCACTTAGTGTGCGAAGTAACGAGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
*
10953991 TGGCACTTAGTGTCCGAA
1 TGGCACTTAGTGTGCGAA
10954009 ACATCCAGAA
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
27 1 0.02
28 59 0.97
29 1 0.02
ACGTcount: A:0.26, C:0.19, G:0.31, T:0.24
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCGAGGA
Found at i:10953993 original size:56 final size:56
Alignment explanation
Indices: 10953907--10954033 Score: 182
Period size: 56 Copynumber: 2.3 Consensus size: 56
10953897 TAATTATATG
** * * * *
10953907 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTCCGAAACATCCAGAA
10953963 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTCCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTCCGAAACATCCAGAA
* *
10954019 CGACACTTAGTGTGC
1 TGGCACTTAGTGTGC
10954034 AAGGTATAGG
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTCCGAAACATCCAGAA
Found at i:10954025 original size:28 final size:28
Alignment explanation
Indices: 10953934--10954033 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 28
10953924 AGTATCGGGG
*
10953934 ATGGCACTTAGTGTGCGATACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
** * * *
10953962 ATGGCACTTAGTGTGCGAAGTAACGAGG
1 ATGGCACTTAGTGTGCGAAACATCCAGA
*
10953990 ATGGCACTTAGTGTCCGAAACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
* *
10954018 ACGACACTTAGTGTGC
1 ATGGCACTTAGTGTGC
10954034 AAGGTATAGG
Statistics
Matches: 57, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAACATCCAGA
Found at i:10954147 original size:32 final size:32
Alignment explanation
Indices: 10954111--10954205 Score: 136
Period size: 32 Copynumber: 3.0 Consensus size: 32
10954101 TGAGTATAAG
* * * *
10954111 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
*
10954143 ATTGGTACAATATGGTACAGGTATGTACGAAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
*
10954175 ATTGGTACAATATGGTACATGTATGTACGGA
1 ATTGGTACAATATGGTACAGGTATGTACGGA
10954206 GATTCAATTG
Statistics
Matches: 56, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 56 1.00
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (32 bp):
ATTGGTACAATATGGTACAGGTATGTACGGAA
Found at i:10960161 original size:28 final size:28
Alignment explanation
Indices: 10960129--10960230 Score: 116
Period size: 28 Copynumber: 3.6 Consensus size: 28
10960119 TAATTATATG
* *
10960129 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAATGTGCGAAGTATCGAGGA
* * *
10960157 TGGCACTTAATGTGCGATA-CATCCAGAA
1 TGGCACTTAATGTGCGA-AGTATCGAGGA
* *
10960185 TGGCACTTAGTGTGCGAAGTAACGAGGA
1 TGGCACTTAATGTGCGAAGTATCGAGGA
*
10960213 TGGCACTTAGTGTGCGAA
1 TGGCACTTAATGTGCGAA
10960231 ACATCCAGAA
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.02
28 60 0.97
29 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (28 bp):
TGGCACTTAATGTGCGAAGTATCGAGGA
Found at i:10960215 original size:56 final size:56
Alignment explanation
Indices: 10960129--10960290 Score: 186
Period size: 56 Copynumber: 2.9 Consensus size: 56
10960119 TAATTATATG
** * *
10960129 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAATGTGCGATACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAATGTGCGATACATCCAGAA
* *
10960185 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAATGTGCGATACATCCAGAA
* * * *
10960241 CGACACTTAGTGTGC-AAGGTATAGGA-TATGGCA-TCTAATGTGCGATACAT
1 TGGCACTTAGTGTGCGAA-GTA-ACGAGGATGGCACT-TAATGTGCGATACAT
10960291 TGAATATTCA
Statistics
Matches: 91, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
55 3 0.03
56 85 0.93
57 3 0.03
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (56 bp):
TGGCACTTAGTGTGCGAAGTAACGAGGATGGCACTTAATGTGCGATACATCCAGAA
Found at i:10960247 original size:28 final size:28
Alignment explanation
Indices: 10960156--10960255 Score: 119
Period size: 28 Copynumber: 3.6 Consensus size: 28
10960146 AGTATCGGGG
* *
10960156 ATGGCACTTAATGTGCGATACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
** * * *
10960184 ATGGCACTTAGTGTGCGAAGTAACGAGG
1 ATGGCACTTAGTGTGCGAAACATCCAGA
10960212 ATGGCACTTAGTGTGCGAAACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
* *
10960240 ACGACACTTAGTGTGC
1 ATGGCACTTAGTGTGC
10960256 AAGGTATAGG
Statistics
Matches: 58, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAACATCCAGA
Found at i:10960407 original size:32 final size:32
Alignment explanation
Indices: 10960333--10960423 Score: 119
Period size: 32 Copynumber: 2.8 Consensus size: 32
10960323 TGAGTATGAG
* * * *
10960333 ATTGGTACGAGATGATACAAGTATCTACGGAA
1 ATTGGTACAATATGGTACAAGTATGTACGGAA
*
10960365 ATTGGTACAATATGGTACAGGTATGTACGGAA
1 ATTGGTACAATATGGTACAAGTATGTACGGAA
* *
10960397 ATTGGTACAATATGGTATATGTATGTA
1 ATTGGTACAATATGGTACAAGTATGTA
10960424 TGGAGATTCA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (32 bp):
ATTGGTACAATATGGTACAAGTATGTACGGAA
Found at i:10964448 original size:156 final size:156
Alignment explanation
Indices: 10964164--10964479 Score: 614
Period size: 156 Copynumber: 2.0 Consensus size: 156
10964154 ATAACTTAGA
10964164 AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAGTGTGAAAAGTTAGGGGCA
1 AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAGTGTGAAAAGTTAGGGGCA
*
10964229 AATTGGTTATTTTTCCCAGGGGTGAGTCTTAAGCCAAAAATAAACAATGGGAGGTATTAATAATT
66 AATTGGTTATTTTGCCCAGGGGTGAGTCTTAAGCCAAAAATAAACAATGGGAGGTATTAATAATT
10964294 TATTTTTCCTGATATAAACCTCGAGC
131 TATTTTTCCTGATATAAACCTCGAGC
10964320 AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAGTGTGAAAAGTTAGGGGCA
1 AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAGTGTGAAAAGTTAGGGGCA
*
10964385 AATTGGTTATTTTGCCCAGGGGTGAGTCTTAAGCCGAAAATAAACAATGGGAGGTATTAATAATT
66 AATTGGTTATTTTGCCCAGGGGTGAGTCTTAAGCCAAAAATAAACAATGGGAGGTATTAATAATT
10964450 TATTTTTCCTGATATAAACCTCGAGC
131 TATTTTTCCTGATATAAACCTCGAGC
10964476 AACT
1 AACT
10964480 AATTCCGGAG
Statistics
Matches: 158, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
156 158 1.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (156 bp):
AACTTCATGCATTTCATTATACGAGCCTTAGGACTAAATTGTAAAAGTGTGAAAAGTTAGGGGCA
AATTGGTTATTTTGCCCAGGGGTGAGTCTTAAGCCAAAAATAAACAATGGGAGGTATTAATAATT
TATTTTTCCTGATATAAACCTCGAGC
Found at i:10970687 original size:6 final size:6
Alignment explanation
Indices: 10970676--10971470 Score: 1590
Period size: 6 Copynumber: 132.5 Consensus size: 6
10970666 TGATGGTTTG
10970676 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10970724 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10970772 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10970820 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10970868 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10970916 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10970964 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971012 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971060 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971108 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971156 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971204 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971252 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971300 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971348 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971396 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
1 GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT GTATAT
10971444 GTATAT GTATAT GTATAT GTATAT GTA
1 GTATAT GTATAT GTATAT GTATAT GTA
10971471 ATATTTGGTT
Statistics
Matches: 789, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 789 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
GTATAT
Found at i:10974764 original size:22 final size:22
Alignment explanation
Indices: 10974736--10974857 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
10974726 TTCCACATCC
10974736 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
10974758 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
10974782 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
10974805 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
10974829 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
10974852 ATCACA
1 ATCACA
10974858 CATACAATCA
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:10974771 original size:47 final size:47
Alignment explanation
Indices: 10974708--10975240 Score: 681
Period size: 47 Copynumber: 11.6 Consensus size: 47
10974698 CCCTTCGGGA
* * *
10974708 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
10974755 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
10974802 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* * ** * *
10974849 CTTATCAC--ACATACA--ATCACATT-GGC-CATTCGGCCTTATC-AC
1 CTTATCACATATATACACTTTCACATTCATCACATT-GGCCAT-TCGGC
* * **
10974891 ATATAT-ACACT-T-T-CACATTCATCA--CAT-TG----GCCATTCGGC
1 CT-TATCACA-TATATACACTTTCA-CATTCATCACATTGGCCATTCGGC
10974930 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
10974977 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
10975024 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
10975071 CTTATCATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
10975118 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
10975165 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
10975214 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
10975241 TATTCAAATA
Statistics
Matches: 431, Mismatches: 29, Indels: 52
0.84 0.06 0.10
Matches are distributed among these distances:
38 6 0.01
39 10 0.02
40 3 0.01
41 11 0.03
42 15 0.03
43 13 0.03
44 3 0.01
45 7 0.02
46 1 0.00
47 315 0.73
49 47 0.11
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:10976765 original size:56 final size:56
Alignment explanation
Indices: 10976698--10976817 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
10976688 TATTAGTTTA
10976698 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
10976754 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
10976810 TTTCCCAT
1 TTGCCCAT
10976818 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:10983159 original size:14 final size:14
Alignment explanation
Indices: 10983101--10983160 Score: 52
Period size: 14 Copynumber: 4.1 Consensus size: 14
10983091 AAACAAATAA
10983101 TTTAAAAT-TAATAT
1 TTTAAAATCTAA-AT
10983115 ATTTAAAAATCATAAAT
1 -TTT-AAAATC-TAAAT
*
10983132 TTT-AAAGCTAAAAT
1 TTTAAAATCT-AAAT
10983146 TTTAAAATCTAAAT
1 TTTAAAATCTAAAT
10983160 T
1 T
10983161 CAAATTTCAA
Statistics
Matches: 38, Mismatches: 2, Indels: 11
0.75 0.04 0.22
Matches are distributed among these distances:
13 1 0.03
14 16 0.42
15 8 0.21
16 8 0.21
17 2 0.05
18 3 0.08
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.42
Consensus pattern (14 bp):
TTTAAAATCTAAAT
Found at i:10984053 original size:18 final size:18
Alignment explanation
Indices: 10984011--10984053 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
10984001 TTATTAAAAA
*
10984011 AAAACATTTTTTACATTT
1 AAAATATTTTTTACATTT
*
10984029 AATATATTTTTTA-ATTT
1 AAAATATTTTTTACATTT
10984046 CAAAATAT
1 -AAAATAT
10984054 ATGGTGATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.42, C:0.07, G:0.00, T:0.51
Consensus pattern (18 bp):
AAAATATTTTTTACATTT
Found at i:10984480 original size:13 final size:13
Alignment explanation
Indices: 10984455--10984492 Score: 60
Period size: 13 Copynumber: 2.9 Consensus size: 13
10984445 AATTTGGCAA
10984455 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
10984468 TG-TTTTGGAAAAG
1 TGCTTTT-GAAAAG
10984481 TGCTTTTGAAAA
1 TGCTTTTGAAAA
10984493 ATTTGGTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 4 0.17
13 15 0.65
14 4 0.17
ACGTcount: A:0.32, C:0.05, G:0.24, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:10986470 original size:23 final size:23
Alignment explanation
Indices: 10986421--10986475 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
10986411 ATAAAATACA
*
10986421 AAAATAGT-ATATTTTAAAAAAT
1 AAAATAATAATATTTTAAAAAAT
* *
10986443 AAAATCATAATATTTT-AGAAAT
1 AAAATAATAATATTTTAAAAAAT
10986465 ACAAATAATAA
1 A-AAATAATAA
10986476 AGGGACAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 12 0.44
23 15 0.56
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (23 bp):
AAAATAATAATATTTTAAAAAAT
Found at i:10986580 original size:22 final size:21
Alignment explanation
Indices: 10986555--10986605 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 21
10986545 ATAAAATACG
*
10986555 AAAATAGTATATTTTAAAAAAT
1 AAAATAGAATATTTT-AAAAAT
*
10986577 AAAATCCGAATATTTTAAAAAT
1 AAAAT-AGAATATTTTAAAAAT
10986599 ACAAATA
1 A-AAATA
10986606 ATAAAGGGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
22 12 0.50
23 12 0.50
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (21 bp):
AAAATAGAATATTTTAAAAAT
Found at i:10986603 original size:134 final size:133
Alignment explanation
Indices: 10986300--10986633 Score: 571
Period size: 134 Copynumber: 2.5 Consensus size: 133
10986290 NNNNNNNNNN
*
10986300 TAAAAAATAAAATTCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
1 TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATAT--
10986365 AAAAACACTAAAGTAATACATTTATGTACTAAAATAAGATAAAAAAATAAAATACAAAAATAGTA
64 AAAAACACTAAAGTAATACATTTATGTACTAAAATAAGATAAAAAAATAAAATACAAAAATAGTA
10986430 TATTT
129 TATTT
**
10986435 TAAAAAATAAAATCATAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
1 TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
* *
10986500 AAACACTAAAGTTATACATTTATGTACTAAAATATA-ATATAAAAAATAAAATACGAAAATAGTA
66 AAACACTAAAGTAATACATTTATGTACTAAAATA-AGATA-AAAAAATAAAATACAAAAATAGTA
10986564 TATTT
129 TATTT
*
10986569 TAAAAAATAAAATCCGAATATTTTAAAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
1 TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
10986634 GATAAAAAAT
Statistics
Matches: 189, Mismatches: 8, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
133 38 0.20
134 91 0.48
135 60 0.32
ACGTcount: A:0.57, C:0.06, G:0.09, T:0.28
Consensus pattern (133 bp):
TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
AAACACTAAAGTAATACATTTATGTACTAAAATAAGATAAAAAAATAAAATACAAAAATAGTATA
TTT
Found at i:10986639 original size:97 final size:97
Alignment explanation
Indices: 10986531--10986730 Score: 366
Period size: 97 Copynumber: 2.1 Consensus size: 97
10986521 ATGTACTAAA
*
10986531 ATATAATATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCC-GAATATTTTAA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAA-CCTGAATATTTTAA
10986595 AAATACAAATAATAAAGGGACAAAATTAGGGTT
65 AAATACAAATAATAAAGGGACAAAATTAGGGTT
*
10986628 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAACCTGAATATTTTAGA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAACCTGAATATTTTAAA
10986693 AATACAAATAATAAAGGGACAAAATTAGGGTT
66 AATACAAATAATAAAGGGACAAAATTAGGGTT
10986725 ATATAA
1 ATATAA
10986731 AAAAACACTA
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
96 2 0.02
97 98 0.98
ACGTcount: A:0.57, C:0.05, G:0.10, T:0.28
Consensus pattern (97 bp):
ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAACCTGAATATTTTAAA
AATACAAATAATAAAGGGACAAAATTAGGGTT
Found at i:10986676 original size:134 final size:131
Alignment explanation
Indices: 10986300--10986677 Score: 431
Period size: 134 Copynumber: 2.8 Consensus size: 131
10986290 NNNNNNNNNN
*
10986300 TAAAAAATAAAATTCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
1 TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
* * * * *
10986365 AAAAACACTAAAGTA-ATACAT-TTATGTACTAAAATAAGATAAAAAAATAAAATACAAAAATAG
66 AAAAA-ACTAAAATACA-AAATAGTATATA-TTAAA-AA-AT-AAAAAATAAAATACAAAAATAG
10986428 TATATTT
125 TATATTT
**
10986435 TAAAAAATAAAATCATAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATAT-A
1 TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
* ** * * * * *
10986499 AAAACACTAAAGTTATAC-ATTTATGTACTAAAATATAATATAAAAAATAAAATACGAAAATAGT
66 AAAAAACTAAA---ATACAAAATA-GTA-TATATTAAAAAATAAAAAATAAAATACAAAAATAGT
10986563 ATATTT
126 ATATTT
*
10986569 TAAAAAATAAAATCCGAATATTTTAAAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
1 TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
* *
10986634 GATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAA
66 -A-AAAAACTAAAATAC-AAAATAGTATATATTAAAAAATAAAA
10986678 CCTGAATATT
Statistics
Matches: 204, Mismatches: 27, Indels: 25
0.80 0.11 0.10
Matches are distributed among these distances:
133 6 0.03
134 109 0.53
135 68 0.33
136 7 0.03
137 12 0.06
138 2 0.01
ACGTcount: A:0.58, C:0.06, G:0.09, T:0.28
Consensus pattern (131 bp):
TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
AAAAAACTAAAATACAAAATAGTATATATTAAAAAATAAAAAATAAAATACAAAAATAGTATATT
T
Found at i:10986842 original size:135 final size:136
Alignment explanation
Indices: 10986628--10987000 Score: 664
Period size: 135 Copynumber: 2.8 Consensus size: 136
10986618 AATTAGGGTT
10986628 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAA-CCTGAATATTTTAG
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCC-GAATATTTTAG
10986692 AAATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATG
65 AAATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATG
10986757 TACT-AA
130 TACTAAA
10986763 A-ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAG
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTT-AAAAAATAAAATCCGAATATTTTAG
* *
10986827 AAATACAAATAATAAAGGGACAAAATTAGAGTTATAT-AAAAAACACTAAAGTTATACATTTATG
65 AAATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATG
10986891 TACTAAA
130 TACTAAA
*
10986898 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGA
*
10986963 AATAAAAATAATAAAGGGACAAAATTAGGGTTATATAA
66 AATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
10987001 GATAAAAAAT
Statistics
Matches: 228, Mismatches: 5, Indels: 9
0.94 0.02 0.04
Matches are distributed among these distances:
134 67 0.29
135 121 0.53
136 40 0.18
ACGTcount: A:0.57, C:0.06, G:0.09, T:0.28
Consensus pattern (136 bp):
ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGA
AATACAAATAATAAAGGGACAAAATTAGGGTTATATAAAAAAACACTAAAATTATACATTTATGT
ACTAAA
Found at i:10987015 original size:97 final size:96
Alignment explanation
Indices: 10986898--10987096 Score: 362
Period size: 97 Copynumber: 2.1 Consensus size: 96
10986888 ATGTACTAAA
10986898 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
10986963 AATAAAAATAATAAAGGGACAAAATTAGGGTT
66 AATAAAAATAATAAAGGGAC-AAATTAGGGTT
* *
10986995 ATATAAGATAAAAAATAAAATATGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAGA
1 ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
*
10987060 AATACAAATAATAAAGGGACAAATTAGGGTT
66 AATAAAAATAATAAAGGGACAAATTAGGGTT
10987091 ATATAA
1 ATATAA
10987097 AAAACACTAA
Statistics
Matches: 99, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
96 17 0.17
97 82 0.83
ACGTcount: A:0.58, C:0.04, G:0.11, T:0.28
Consensus pattern (96 bp):
ATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAA
AATAAAAATAATAAAGGGACAAATTAGGGTT
Found at i:10987086 original size:366 final size:365
Alignment explanation
Indices: 10986300--10987197 Score: 1649
Period size: 367 Copynumber: 2.5 Consensus size: 365
10986290 NNNNNNNNNN
*
10986300 TAAAAAATAAAATTCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
1 TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
* *
10986365 AAAAACACTAAAGTAATACATTTATGTACTAAAATAAGATAAAAAAATAAAATACAAAAATAGTA
66 AAAAACACTAAAGTTATACATTTATGTACTAAAATAAGAT-AAAAAATAAAATACGAAAATAGTA
*
10986430 TATTTTAAAAAATAAAATCATAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTA
130 TATTTTAAAAAATAAAATCATAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGAGTTA
*
10986495 TATAAAAACACTAAAGTTATACATTTATGTACTAAAATATAATATAAAAAATAAAATACGAAAAT
195 TATAAAAACACTAAAGTTATACATTTATGTACTAAAATATAAGATAAAAAATAAAATACGAAAAT
*
10986560 AGTATATTTTAAAAAATAAAATCCGAATATTTTAAAAATACAAATAATAAAGGGACAAAATTAGG
260 AGTATATTTTAAAAAATAAAATCCGAATATTTTAAAAATAAAAATAATAAAGGGACAAAATTAGG
10986625 GTTATATAAGATAAAAAATAAAATACGAAAATAGTATATTT
325 GTTATATAAGATAAAAAATAAAATACGAAAATAGTATATTT
10986666 TAAAAAATAAAA-CCTGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATA
1 TAAAAAATAAAATCC-GAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATA
*
10986730 AAAAAACACTAAAATTATACATTTATGTACTAAAATAAGATAAAAAATAAAATACGAAAATAGTA
65 AAAAAACACTAAAGTTATACATTTATGTACTAAAATAAGATAAAAAATAAAATACGAAAATAGTA
**
10986795 TATTTTAAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGAGTT
130 TATTTT-AAAAAATAAAATCATAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGAGTT
10986860 ATATAAAAAACACTAAAGTTATACATTTATGTACTAAAATATAAGATAAAAAATAAAATACGAAA
194 ATAT-AAAAACACTAAAGTTATACATTTATGTACTAAAATATAAGATAAAAAATAAAATACGAAA
10986925 ATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAAAATAAAAATAATAAAGGGACAAAATTA
258 ATAGTATATTTTAAAAAATAAAATCCGAATATTTTAAAAATAAAAATAATAAAGGGACAAAATTA
*
10986990 GGGTTATATAAGATAAAAAATAAAATATGAAAATAGTATATTT
323 GGGTTATATAAGATAAAAAATAAAATACGAAAATAGTATATTT
10987033 TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGAC-AAATTAGGGTTATAT-A
1 TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
10987096 AAAAACACTAAAGTTATACATTTATGTACTAAAATAAGATAAAAAATAAAATACGAAAATAGTAT
66 AAAAACACTAAAGTTATACATTTATGTACTAAAATAAGATAAAAAATAAAATACGAAAATAGTAT
10987161 ATTTTAAAAAATAAAATCATAATATTTTAGAAATACA
131 ATTTTAAAAAATAAAATCATAATATTTTAGAAATACA
10987198 CCTATTCAAT
Statistics
Matches: 515, Mismatches: 13, Indels: 10
0.96 0.02 0.02
Matches are distributed among these distances:
364 30 0.06
365 100 0.19
366 174 0.34
367 209 0.41
368 2 0.00
ACGTcount: A:0.57, C:0.06, G:0.09, T:0.28
Consensus pattern (365 bp):
TAAAAAATAAAATCCGAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGGGTTATATAA
AAAAACACTAAAGTTATACATTTATGTACTAAAATAAGATAAAAAATAAAATACGAAAATAGTAT
ATTTTAAAAAATAAAATCATAATATTTTAGAAATACAAATAATAAAGGGACAAAATTAGAGTTAT
ATAAAAACACTAAAGTTATACATTTATGTACTAAAATATAAGATAAAAAATAAAATACGAAAATA
GTATATTTTAAAAAATAAAATCCGAATATTTTAAAAATAAAAATAATAAAGGGACAAAATTAGGG
TTATATAAGATAAAAAATAAAATACGAAAATAGTATATTT
Found at i:10987187 original size:229 final size:233
Alignment explanation
Indices: 10986764--10987195 Score: 791
Period size: 229 Copynumber: 1.9 Consensus size: 233
10986754 ATGTACTAAA
10986764 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAGAA
1 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAGAA
10986829 ATACAAATAATAAAGGGACAAAATTAGAGTTATATAAAAAACACTAAAGTTATACATTTATGTAC
66 ATACAAATAATAAAGGGACAAAATTAGAGTTATATAAAAAACACTAAAGTTATACATTTATGTAC
*
10986894 TAAAATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCCGAATATTT
131 TAAAATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCAGAATATTT
10986959 TAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
196 TAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
*
10986997 ATAAGATAAAAAATAAAATATGAAAATAGTATATTTT-AAAAAATAAAATCCGAATATTTTAGAA
1 ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAGAA
*
10987061 ATACAAATAATAAAGGGAC-AAATTAGGGTTATATAAAAAACACTAAAGTTATACATTTATGTAC
66 ATACAAATAATAAAGGGACAAAATTAGAGTTATATAAAAAACACTAAAGTTATACATTTATGTAC
*
10987125 T-AAA-ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCATAATATTT
131 TAAAATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCAGAATATTT
*
10987188 TAGAAATA
196 TAAAAATA
10987196 CACCTATTCA
Statistics
Matches: 194, Mismatches: 5, Indels: 4
0.96 0.02 0.02
Matches are distributed among these distances:
229 64 0.33
230 3 0.02
231 45 0.23
232 46 0.24
233 36 0.19
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.28
Consensus pattern (233 bp):
ATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAAATAAAATCCGAATATTTTAGAA
ATACAAATAATAAAGGGACAAAATTAGAGTTATATAAAAAACACTAAAGTTATACATTTATGTAC
TAAAATATAAGATAAAAAATAAAATACGAAAATAGTATATTTTAAAAAATAAAATCAGAATATTT
TAAAAATAAAAATAATAAAGGGACAAAATTAGGGTTAT
Found at i:10989238 original size:12 final size:12
Alignment explanation
Indices: 10989223--10989261 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
10989213 GCCGATATAG
*
10989223 AGCCCGATCCAT
1 AGCCCGATCCAC
10989235 AGCCCGATCCAC
1 AGCCCGATCCAC
*
10989247 AGCCCGATCTAC
1 AGCCCGATCCAC
10989259 AGC
1 AGC
10989262 TAGATCCTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.26, C:0.44, G:0.18, T:0.13
Consensus pattern (12 bp):
AGCCCGATCCAC
Found at i:10993184 original size:122 final size:123
Alignment explanation
Indices: 10992984--10993220 Score: 415
Period size: 122 Copynumber: 1.9 Consensus size: 123
10992974 TATTATAATA
10992984 TGTTATATTTAAAAATAACAAAAAAAATACCTTTAATTTTTTCTTCTCCTTCTTTCTCCCTCTCT
1 TGTTATATTTAAAAATAACAAAAAAAATACCTTTAA--TTTTCTTCTCCTTCTTTCTCCCTCTCT
*
10993049 TCTCTTCTGTAATC-TTTTTTTACTGAAATTTTTTTCCTTCTTTATTTTTTTCAGAAAATC
64 TCTCTTCTCTAATCTTTTTTTTACTGAAATTTTTTTCCTTCTTT-TTTTTTTCAGAAAATC
*
10993109 TGTTATATTTAAAAATAAGAAAAAAAATACCTTTAA-TTTCTTCTCCTTCTTTCTCCCTCTCTTC
1 TGTTATATTTAAAAATAACAAAAAAAATACCTTTAATTTTCTTCTCCTTCTTTCTCCCTCTCTTC
10993173 TCTTCTCTAATCTTTTTTTTACTGAAATTTTTTTCCTTCTTTTTTTTT
66 TCTTCTCTAATCTTTTTTTTACTGAAATTTTTTTCCTTCTTTTTTTTT
10993221 CTTTTGTTCT
Statistics
Matches: 109, Mismatches: 2, Indels: 5
0.94 0.02 0.04
Matches are distributed among these distances:
122 45 0.41
123 29 0.27
125 35 0.32
ACGTcount: A:0.24, C:0.19, G:0.03, T:0.53
Consensus pattern (123 bp):
TGTTATATTTAAAAATAACAAAAAAAATACCTTTAATTTTCTTCTCCTTCTTTCTCCCTCTCTTC
TCTTCTCTAATCTTTTTTTTACTGAAATTTTTTTCCTTCTTTTTTTTTTCAGAAAATC
Found at i:10993407 original size:15 final size:15
Alignment explanation
Indices: 10993387--10993436 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
10993377 ATATTTTATT
10993387 ATTTTTTTCAGATTC
1 ATTTTTTTCAGATTC
10993402 ATTTTTTT-A-A--C
1 ATTTTTTTCAGATTC
*
10993413 AGTTTTTTCAGATTC
1 ATTTTTTTCAGATTC
10993428 AATTTTTTT
1 -ATTTTTTT
10993437 AACAGATTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 9
0.72 0.05 0.23
Matches are distributed among these distances:
11 8 0.29
12 1 0.04
13 2 0.07
14 1 0.04
15 9 0.32
16 7 0.25
ACGTcount: A:0.22, C:0.10, G:0.06, T:0.62
Consensus pattern (15 bp):
ATTTTTTTCAGATTC
Found at i:10993418 original size:26 final size:27
Alignment explanation
Indices: 10993389--10993441 Score: 99
Period size: 26 Copynumber: 2.0 Consensus size: 27
10993379 ATTTTATTAT
10993389 TTTTTTCAGATTC-ATTTTTTTAACAG
1 TTTTTTCAGATTCAATTTTTTTAACAG
10993415 TTTTTTCAGATTCAATTTTTTTAACAG
1 TTTTTTCAGATTCAATTTTTTTAACAG
10993442 ATTGTATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.25, C:0.11, G:0.08, T:0.57
Consensus pattern (27 bp):
TTTTTTCAGATTCAATTTTTTTAACAG
Found at i:10995689 original size:228 final size:225
Alignment explanation
Indices: 10995281--10996629 Score: 1068
Period size: 228 Copynumber: 5.9 Consensus size: 225
10995271 ATTCAAATAG
* * * *
10995281 ATGCAAATTTTTGTCAAGACCCTGACCGGCAAGACTATCACCCTT-GAGGTGGAAAGCTCCGACA
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACTATCA-CCTTGGAGGTTGAAAGCTCAGACA
* * * * * *
10995345 CCATCGATAATGTCAAGGCAAAGATCCAAGATAAAGAAGGAATCCCACCAAATCAACAGAGGCTT
65 CCATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCC-CCAGACCAACAGAGG-TT
* * * * * * * *
10995410 -ATCTTTGCTA-GTAAGCAGCTAGAATATGGTCGTACACTTGCTGACTACAACATTCAGAAGGAG
128 GATCTTTGC-AGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAA
* *
10995473 TCCACCCTGCACTTGGTCCTTCGTTTGAGGAGTGGT
192 TCCACCCTCCATTTGGTCCTTCGTTTG-GG-GTGGT
* * * * *
10995509 ATGCAAATCTTTGTTAAGACCCTCACCGGCAAGACTATCACCCTT-GAGGTGGAAAGCTCGGACA
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACTATCA-CCTTGGAGGTTGAAAGCTCAGACA
* * * * *
10995573 CCATTGATAATGTCAAGGCCAAGATCCAAGACAAATAAGGGATCCCTCCAGACCAGCAGGGGCTT
65 CCATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCC-CCAGACCAACAGAGG-TT
* * * * * *
10995638 -ATCTTTGCCGGTAAGCAACTAGAAGATGGTCGTACCCTGGCTGATTACAACATCCAAAAGGATT
128 GATCTTTGCAGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAAT
* * * * * *
10995702 CCACCCTCCATTTGGTGCTCCGCCTTCGTGGAGGA
193 CCACCCTCCATTTGGTCCTTCG--TTTGGGGTGGT
* * * * * * * * *
10995737 ATGCAAATCTTTGTTAAGACCTTGACAGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATAC
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACTATCACCTTGGAGGTTGAAAGCTCAGACAC
* * * ** *
10995802 CATTGACAATGTCAAGGCTAAGATCCAGGAT-AAGGAGGGTATTCAGCCAGACCAGCAGAGGTTG
66 CATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGG-A-TCCCCCAGACCAACAGAGGTTG
* * *
10995866 ATCTTTGCTGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACATCATCCAAAAGGAATC
129 ATCTTTGCAGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAATC
*
10995931 CACCCTCTATTTGGTGCTTCGTCTCCGTGGTGGTATGCAAATGTGGTGGT
194 CACCCTCCATTTGGT-C--C-T-T-C---GT--T-TG-----G-GGTGGT
* * * * * * * * *
10995981 ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCAGATAC
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACTATCACCTTGGAGGTTGAAAGCTCAGACAC
* * *
10996046 CATTGACAATGTCAAGGCTAAGATCCAGGACAAAG-AGGGTATTCCCCCAGACCAACAGAGGTTG
66 CATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGG-A-TCCCCCAGACCAACAGAGGTTG
* * * *
10996110 ATCTTTGCAGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAACATCCAAAAGGAATC
129 ATCTTTGCAGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAATC
* * *
10996175 CACCCTCCACTTGGTGCTTCGTCTTTGTGGTGGT
194 CACCCTCCATTTGGTCCTTCG--TTTGGGGTGGT
* * * * * * * * *
10996209 ATGCAGATTTTTGTGAAGACTCTTACCAGGAAA-ACGATCACCTTGGAAGTTGAGAGTTCTGACA
1 ATGCAAATTTTTGTTAAGACCCTGACC-GGAAAGACTATCACCTTGGAGGTTGAAAGCTCAGACA
* * * * *
10996273 CTATTGACAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATCCCTCCAGACCAACAGAGGTTG
65 CCATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCC-CCAGACCAACAGAGGTTG
** * * * * * * *
10996338 AT-TTTCGTGGGTAAGCAGCTTG-AGAATGGCAGGACACTTGCAGACTACAACAT-TAAAAGGAA
129 ATCTTT-GCAGGTAAGCAACTAGAAG-ATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAA
* * * *
10996400 TCGACCCTCCATTTGGTTCTTCGTCTTCGTGGTGGG
192 TCCACCCTCCATTTGGTCCTTCGT-TT-GGGGTGGT
* ** * * * * *
10996436 ATGCAAATTTTTGTGAAGACATTGACAGGAAAGACTATCACTTTGGAAGTTGAAAGCTCGGACAT
1 ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACTATCACCTTGGAGGTTGAAAGCTCAGACAC
* * * * * *
10996501 TATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCTAGACCAGCAGAGGTTGA
66 CATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCCCC-AGACCAACAGAGGTTGA
* * ** * *
10996566 TCTTTGCAGGGAAGCAACTTGAAGATGGAAGGAC-CTTGGCAGACTACAACATCCAGAAA-GAAT
130 TCTTTGCAGGTAAGCAACTAGAAGATGGCCGCACAC-TGGCTGACTACAACATCCA-AAAGGAAT
10996629 C
193 C
10996630 GACTCTGCAC
Statistics
Matches: 941, Mismatches: 138, Indels: 84
0.81 0.12 0.07
Matches are distributed among these distances:
225 1 0.00
226 10 0.01
227 196 0.21
228 507 0.54
229 14 0.01
230 3 0.00
231 1 0.00
232 1 0.00
234 3 0.00
235 3 0.00
237 3 0.00
238 2 0.00
239 1 0.00
240 1 0.00
241 1 0.00
244 191 0.20
245 3 0.00
ACGTcount: A:0.30, C:0.22, G:0.24, T:0.24
Consensus pattern (225 bp):
ATGCAAATTTTTGTTAAGACCCTGACCGGAAAGACTATCACCTTGGAGGTTGAAAGCTCAGACAC
CATTGACAATGTCAAGGCCAAGATCCAAGATAAAGAAGGGATCCCCCAGACCAACAGAGGTTGAT
CTTTGCAGGTAAGCAACTAGAAGATGGCCGCACACTGGCTGACTACAACATCCAAAAGGAATCCA
CCCTCCATTTGGTCCTTCGTTTGGGGTGGT
Found at i:10995976 original size:16 final size:16
Alignment explanation
Indices: 10995957--10995988 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10995947 CTTCGTCTCC
10995957 GTGGTGGTATGCAAAT
1 GTGGTGGTATGCAAAT
10995973 GTGGTGGTATGCAAAT
1 GTGGTGGTATGCAAAT
10995989 ATTTGTTAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.06, G:0.38, T:0.31
Consensus pattern (16 bp):
GTGGTGGTATGCAAAT
Found at i:10996166 original size:244 final size:243
Alignment explanation
Indices: 10995737--10996443 Score: 835
Period size: 244 Copynumber: 3.0 Consensus size: 243
10995727 TCGTGGAGGA
* *
10995737 ATGCAAATCTTTGTTAAGAC-CTTGACAGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATA
1 ATGCAAATATTTGTTAAGACTCTT-ACCGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATA
** *
10995801 CCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCAGCCAGACCAGCAGAGGTTG
65 CCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAACAGAGGTTG
* * * * *
10995866 ATCTTTGCTGGTAAGCAACTAGAAGATGGCCGCACCCTGGCTGACTACATCATCCAAAAGGAATC
130 ATCTTTGCAGGTAAGCAACTTGAAGATGGCCGCACACTCGCTGACTACAACATCCAAAAGGAATC
*
10995931 CACCCTCTATTTGGTGCTTCGTCTCCGTGGTGGTATGCAAATGTGGTGGT
195 CACCCTCCATTTGGTGCTTCGTCT-CGTGGTGGTATGCAAATGTGGTGGT
*
10995981 ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGTTCAGATAC
1 ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATAC
* *
10996046 CATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAACAGAGGTTGA
66 CATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAACAGAGGTTGA
* *
10996111 TCTTTGCAGGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAACATCCAAAAGGAATCC
131 TCTTTGCAGGTAAGCAACTTGAAGATGGCCGCACACTCGCTGACTACAACATCCAAAAGGAATCC
*
10996176 ACCCTCCACTTGGTGCTTCG--TC-------T-T-----TGTGGTGGT
196 ACCCTCCATTTGGTGCTTCGTCTCGTGGTGGTATGCAAATGTGGTGGT
* * * * * * * * *
10996209 ATGCAGATTTTTGTGAAGACTCTTACCAGGAAA-ACGATCACCTTGGAAGTTGAGAGTTCTGACA
1 ATGCAAATATTTGTTAAGACTCTTACC-GGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATA
* * * *
10996273 CTATTGACAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTA-TCCCTCCAGACCAACAGAGGTT
65 CCATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCC-CCAGACCAACAGAGGTT
** * * * * * *
10996337 GAT-TTTCGTGGGTAAGCAGCTTG-AGAATGGCAGGACACTTGCAGACTACAACAT-TAAAAGGA
129 GATCTTT-GCAGGTAAGCAACTTGAAG-ATGGCCGCACACTCGCTGACTACAACATCCAAAAGGA
* * *
10996399 ATCGACCCTCCATTTGGTTCTTCGTCTTCGTGGTGGGATGCAAAT
192 ATCCACCCTCCATTTGGTGCTTCGTC-TCGTGGTGGTATGCAAAT
10996444 TTTTGTGAAG
Statistics
Matches: 397, Mismatches: 45, Indels: 43
0.82 0.09 0.09
Matches are distributed among these distances:
227 37 0.09
228 149 0.38
229 5 0.01
230 2 0.01
233 1 0.00
234 1 0.00
238 1 0.00
241 1 0.00
242 1 0.00
243 1 0.00
244 195 0.49
245 3 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (243 bp):
ATGCAAATATTTGTTAAGACTCTTACCGGAAAGACAATTACTTTGGAGGTTGAGAGTTCAGATAC
CATTGACAATGTCAAGGCTAAGATCCAGGATAAGGAGGGTATTCCCCCAGACCAACAGAGGTTGA
TCTTTGCAGGTAAGCAACTTGAAGATGGCCGCACACTCGCTGACTACAACATCCAAAAGGAATCC
ACCCTCCATTTGGTGCTTCGTCTCGTGGTGGTATGCAAATGTGGTGGT
Found at i:10996520 original size:227 final size:226
Alignment explanation
Indices: 10995973--10996629 Score: 772
Period size: 227 Copynumber: 2.9 Consensus size: 226
10995963 GTATGCAAAT
* * * * *
10995973 GTGGTGGTATGCAAATATTTGTTAAGACTCTTACCGGAAAGACCATTACTTTGGAGGTTGAGAGT
1 GTGGTGGTATGCAAATTTTTGTGAAGACTCTTACAGGAAAGACCATCACTTTGGAAGTTGAGAGT
* * * * * *
10996038 TCAGATACCATTGACAATGTCAAGGCTAAGATCCAGGACAAAGAGGGTATTCCCCCAGACCAACA
66 TCAGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTA-TCCCCCAGACCAACA
* * * * *
10996103 GAGGTTGATCTTTGCA-GGTAAGCAACTTGAAGATGGCCGCACTCTCGCTGATTACAACATCCAA
130 GAGGTTGATCTTTG-AGGGTAAGCAACTTGAAGATGGCAGGAC-CTTGCAGACTACAACATCCAA
*
10996167 AAGGAATCCACCCTCCACTTGGTGCTTCGTCTTT
193 AAGGAATCCACCCTCCACTTGGTGCTTCGTCTTC
* * *
10996201 GTGGTGGTATGCAGATTTTTGTGAAGACTCTTACCAGGAAA-ACGATCACCTTGGAAGTTGAGAG
1 GTGGTGGTATGCAAATTTTTGTGAAGACTCTTA-CAGGAAAGACCATCACTTTGGAAGTTGAGAG
* *
10996265 TTCTGACACTATTGACAATGTCAAGGCCAAAATCCAGGATAAGGAAGGTATCCCTCCAGACCAAC
65 TTCAGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCC-CCAGACCAAC
* * *
10996330 AGAGGTTGAT-TTTCGTGGGTAAGCAGCTTG-AGAATGGCAGGACACTTGCAGACTACAACAT-T
129 AGAGGTTGATCTTT-GAGGGTAAGCAACTTGAAG-ATGGCAGGAC-CTTGCAGACTACAACATCC
* * *
10996392 AAAAGGAATCGACCCTCCATTTGGTTCTTCGTCTTC
191 AAAAGGAATCCACCCTCCACTTGGTGCTTCGTCTTC
* * * *
10996428 GTGGTGGGATGCAAATTTTTGTGAAGACAT-TGACAGGAAAGACTATCACTTTGGAAGTTGAAAG
1 GTGGTGGTATGCAAATTTTTGTGAAGAC-TCTTACAGGAAAGACCATCACTTTGGAAGTTGAGAG
* * * * * * * *
10996492 CTCGGACATTATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAAGGAATCCCCCTAGACCAGC
65 TTCAGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCC-AGACCAAC
*
10996557 AGAGGTTGATCTTTGCAGGG-AAGCAACTTGAAGATGGAAGGACCTTGGCAGACTACAACATCCA
129 AGAGGTTGATCTTTG-AGGGTAAGCAACTTGAAGATGGCAGGACCTT-GCAGACTACAACATCCA
10996621 GAAA-GAATC
192 -AAAGGAATC
10996630 GACTCTGCAC
Statistics
Matches: 367, Mismatches: 48, Indels: 28
0.83 0.11 0.06
Matches are distributed among these distances:
226 12 0.03
227 185 0.50
228 161 0.44
229 9 0.02
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.25
Consensus pattern (226 bp):
GTGGTGGTATGCAAATTTTTGTGAAGACTCTTACAGGAAAGACCATCACTTTGGAAGTTGAGAGT
TCAGACACTATTGACAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCAGACCAACAG
AGGTTGATCTTTGAGGGTAAGCAACTTGAAGATGGCAGGACCTTGCAGACTACAACATCCAAAAG
GAATCCACCCTCCACTTGGTGCTTCGTCTTC
Found at i:10997708 original size:17 final size:18
Alignment explanation
Indices: 10997669--10997711 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
10997659 GCTCCTATTG
10997669 TCTTTTTTCTTTCCTCTCC
1 TCTTTTTTCTTTCCTCT-C
* *
10997688 TCTTTTTTTTTTGCTCT-
1 TCTTTTTTCTTTCCTCTC
10997705 TCTTTTT
1 TCTTTTT
10997712 CTCCCCCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 7 0.32
19 15 0.68
ACGTcount: A:0.00, C:0.26, G:0.02, T:0.72
Consensus pattern (18 bp):
TCTTTTTTCTTTCCTCTC
Found at i:11000761 original size:26 final size:26
Alignment explanation
Indices: 11000732--11000836 Score: 183
Period size: 26 Copynumber: 4.0 Consensus size: 26
11000722 TGGTACAAAT
11000732 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
11000758 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
11000784 TGATAATGGGTTAGGTAAAAGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11000810 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11000836 T
1 T
11000837 AATGGGCATT
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.34
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:11002465 original size:27 final size:27
Alignment explanation
Indices: 11002433--11002573 Score: 164
Period size: 27 Copynumber: 5.2 Consensus size: 27
11002423 AGGAAGCGTC
*
11002433 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
11002460 CTGGTGGCTCTGCCAC-ATATATCTG-T
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
11002486 CCTAGTGGCTATGCCACAATTATCTGAT
1 -CTGGTGGCTCTGCCACAATTATCTGAT
* *
11002514 CTGGTGGCTCTACCA-AATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
11002541 CTGGTGGCTCTGCCACAA-TATCAGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
11002568 CTGGTG
1 CTGGTG
11002574 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 11 0.11
27 81 0.84
28 5 0.05
ACGTcount: A:0.21, C:0.24, G:0.22, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:11002512 original size:54 final size:54
Alignment explanation
Indices: 11002430--11002573 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
11002420 TAGAGGAAGC
* *
11002430 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCAAATATATCT
*
11002484 GTCCTAGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCAAATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCAAATATATCT
* * *
11002538 GTTCTGGTGGCTCTGCCACAA-TATCAGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
11002574 ACTTCGTCAC
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
53 5 0.06
54 77 0.94
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.33
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCAAATATATCT
Found at i:11002585 original size:81 final size:80
Alignment explanation
Indices: 11002433--11002591 Score: 189
Period size: 81 Copynumber: 2.0 Consensus size: 80
11002423 AGGAAGCGTC
* * *
11002433 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTCCTAGTGGCTAT
1 CTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATATCAGTCCTAGTGACTAT
11002498 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * *
11002514 CTGGTGGCTCTACCA-AATATATCTGTTCTGGTGGCTCTGCCACA-ATATCAGTATCTGGTGACT
1 CTGGTGGCTATACCACAAT-TATCTGATCTGGTGGCTCTGCCACATATATCAGT-CCTAGTGACT
*
11002577 -TCGTCACAATATCTG
64 AT-GCCACAATATCTG
11002592 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 8, Indels: 7
0.82 0.10 0.09
Matches are distributed among these distances:
80 17 0.25
81 50 0.75
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.33
Consensus pattern (80 bp):
CTGGTGGCTATACCACAATTATCTGATCTGGTGGCTCTGCCACATATATCAGTCCTAGTGACTAT
GCCACAATATCTGAT
Found at i:11007333 original size:31 final size:30
Alignment explanation
Indices: 11007297--11007357 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 30
11007287 CCTGGACTTA
*
11007297 AACGAGAAGTAACGAAATTTGTAGGGAAAT
1 AACGAGAAGTAACGAAATTTATAGGGAAAT
* *
11007327 NAACGAGAAGTAACGGAGTTTATAGGGAAAT
1 -AACGAGAAGTAACGAAATTTATAGGGAAAT
11007358 GTCTGACATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.07, G:0.28, T:0.20
Consensus pattern (30 bp):
AACGAGAAGTAACGAAATTTATAGGGAAAT
Found at i:11008887 original size:26 final size:26
Alignment explanation
Indices: 11008858--11008965 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
11008848 TGGTACAACT
*
11008858 TGATAATGGGTTAGGCAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
11008884 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11008910 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
11008936 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
11008962 TGAT
1 TGAT
11008966 GGGCATTTCA
Statistics
Matches: 74, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 74 1.00
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:11010587 original size:27 final size:26
Alignment explanation
Indices: 11010547--11010687 Score: 115
Period size: 27 Copynumber: 5.2 Consensus size: 26
11010537 AGGAAGTGTC
11010547 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTATGCCA-AATTATCTGAT
* *
11010574 CTGGTGGCTTTGCCACATATATCTG-T
1 CTGGTGGCTATGCCAAAT-TATCTGAT
* *
11010600 CTTTGTGGGTATGCCACAATTATCTGAT
1 C-TGGTGGCTATGCCA-AATTATCTGAT
* * * * *
11010628 ATGTTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAAAT-TATCTGAT
*
11010655 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTATGCCA-AATTATCTG-AT
11010682 CTGGTG
1 CTGGTG
11010688 ACTTCGTCAC
Statistics
Matches: 90, Mismatches: 17, Indels: 14
0.74 0.14 0.12
Matches are distributed among these distances:
26 12 0.13
27 74 0.82
28 4 0.04
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTATGCCAAATTATCTGAT
Found at i:11010642 original size:54 final size:54
Alignment explanation
Indices: 11010547--11010687 Score: 178
Period size: 54 Copynumber: 2.6 Consensus size: 54
11010537 AGGAAGTGTC
* * *
11010547 CTGGTGGCTATGCCATAATTATCTGATCTGGTGGCTTTGCCACATATATCTG-T
1 CTGGTGGCTATGCCACAATTATCTGATATGGTGGCTCTGCCACATATATCTGTT
* * *
11010600 CTTTGTGGGTATGCCACAATTATCTGATATGTTGGCTCTGCCACATATATCTGTT
1 C-TGGTGGCTATGCCACAATTATCTGATATGGTGGCTCTGCCACATATATCTGTT
* *
11010655 CTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTG-ATATGGTG
11010688 ACTTCGTCAC
Statistics
Matches: 74, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
53 7 0.09
54 65 0.88
55 2 0.03
ACGTcount: A:0.18, C:0.21, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATATGGTGGCTCTGCCACATATATCTGTT
Found at i:11010698 original size:27 final size:26
Alignment explanation
Indices: 11010547--11010705 Score: 97
Period size: 27 Copynumber: 5.9 Consensus size: 26
11010537 AGGAAGTGTC
* * * *
11010547 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGTT
* *
11010574 CTGGTGGCTTTGCCACATATATCTG-T
1 CTGGTGACTCTGCCACA-ATATCTGTT
* ** * *
11010600 CTTTGTGGGTATGCCACAATTATCTGAT
1 C-TGGTGACTCTGCCACAA-TATCTGTT
* * *
11010628 ATGTTGGCTCTGCCACATATATCTGTT
1 CTGGTGACTCTGCCACA-ATATCTGTT
*
11010655 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTGT-T
*
11010682 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
11010706 ACAGCCTTGC
Statistics
Matches: 110, Mismatches: 15, Indels: 14
0.79 0.11 0.10
Matches are distributed among these distances:
26 12 0.11
27 95 0.86
28 3 0.03
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.37
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGTT
Found at i:11015895 original size:3 final size:3
Alignment explanation
Indices: 11015881--11016202 Score: 71
Period size: 3 Copynumber: 106.3 Consensus size: 3
11015871 AATAGGACGG
* * * * *
11015881 ATA ATA AAA ATA ATA GTA ATG ATA ATA ATA A-A GATA ATG GTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA ATA ATA ATA
* * * * * *
11015926 ATA TTA A-A A-A ATTA AT- ATA ATG ATG ATA ATA GTG TTA A-A A-A
1 ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * **
11015967 ATA ATA ATA ATA A-A CA-A ACGA CATA TTA ATG ATA ATA GATA ATA ACG
1 ATA ATA ATA ATA ATA -ATA A-TA -ATA ATA ATA ATA ATA -ATA ATA ATA
*
11016014 ATA ATA ATA ATGGA AGTA ATGA A-A ATA ATA ATA ATA GA-A ACA ATA
1 ATA ATA ATA AT--A A-TA AT-A ATA ATA ATA ATA ATA -ATA ATA ATA
* * * *
11016059 GTA ATA A-A AGTA ATA ATA A-A ATA GAAA ATA ACA ATG ATA CATTA ATA
1 ATA ATA ATA A-TA ATA ATA ATA ATA -ATA ATA ATA ATA ATA -A-TA ATA
* * * * * * *
11016106 ATA ATA AT- ATA CGTG CTA ATA ATA ATA ACA AT- ATA AAA AAA AAA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
* * * * *
11016150 ATA ATA CT- ATA TTA ATA AAA ATA ATA ATA GTA GGTTA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA --ATA ATA ATA ATA
*
11016196 GTA ATA A
1 ATA ATA A
11016203 AAAGGTAAAA
Statistics
Matches: 232, Mismatches: 57, Indels: 60
0.66 0.16 0.17
Matches are distributed among these distances:
2 25 0.11
3 179 0.77
4 20 0.09
5 7 0.03
6 1 0.00
ACGTcount: A:0.60, C:0.03, G:0.09, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:11016160 original size:20 final size:20
Alignment explanation
Indices: 11016137--11016175 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
11016127 ATAATAACAA
11016137 TATAAAAAAAAAAATAATAC
1 TATAAAAAAAAAAATAATAC
** *
11016157 TATATTAATAAAAATAATA
1 TATAAAAAAAAAAATAATA
11016176 ATAGTAGGTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (20 bp):
TATAAAAAAAAAAATAATAC
Found at i:11016169 original size:23 final size:22
Alignment explanation
Indices: 11016126--11016178 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
11016116 ACGTGCTAAT
11016126 AATAATAACAATATAAAAAAAAA
1 AATAAT-ACAATATAAAAAAAAA
* * *
11016149 AATAATACTATATTAATAAAAAT
1 AATAATACAATA-TAAAAAAAAA
11016172 AATAATA
1 AATAATA
11016179 GTAGGTTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
22 5 0.19
23 21 0.81
ACGTcount: A:0.70, C:0.04, G:0.00, T:0.26
Consensus pattern (22 bp):
AATAATACAATATAAAAAAAAA
Found at i:11016187 original size:23 final size:23
Alignment explanation
Indices: 11016143--11016201 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 23
11016133 ACAATATAAA
* *
11016143 AAAAAAAATAATACTATATTAAT
1 AAAAATAATAATACTAGATTAAT
* *
11016166 AAAAATAATAATAGTAGGTTAAT
1 AAAAATAATAATACTAGATTAAT
* *
11016189 AATAATAGTAATA
1 AAAAATAATAATA
11016202 AAAAGGTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.31
Consensus pattern (23 bp):
AAAAATAATAATACTAGATTAAT
Found at i:11016313 original size:15 final size:15
Alignment explanation
Indices: 11016282--11016338 Score: 50
Period size: 15 Copynumber: 4.0 Consensus size: 15
11016272 AAGCAAACAG
*
11016282 TAATAGTATATAG-AA
1 TAATAGTA-AAAGTAA
11016297 TAATAGTAAAAGTAA
1 TAATAGTAAAAGTAA
*
11016312 TAATA--ATAA-TAA
1 TAATAGTAAAAGTAA
*
11016324 TAATATTAAAAGTAA
1 TAATAGTAAAAGTAA
11016339 CACTCTCCCC
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
12 8 0.23
13 3 0.09
14 6 0.17
15 18 0.51
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.32
Consensus pattern (15 bp):
TAATAGTAAAAGTAA
Found at i:11016325 original size:27 final size:27
Alignment explanation
Indices: 11016258--11016338 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
11016248 CTACTACTAC
*
11016258 TAATAATAATAATAA-AGCAAACAGTAA
1 TAATAATAATAATAATAGTAAA-AGTAA
* *
11016285 TAGT-ATATAGAATAATAGTAAAAGTAA
1 TAATAATA-ATAATAATAGTAAAAGTAA
*
11016312 TAATAATAATAATAATATTAAAAGTAA
1 TAATAATAATAATAATAGTAAAAGTAA
11016339 CACTCTCCCC
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
26 3 0.07
27 34 0.76
28 8 0.18
ACGTcount: A:0.60, C:0.02, G:0.09, T:0.28
Consensus pattern (27 bp):
TAATAATAATAATAATAGTAAAAGTAA
Found at i:11016631 original size:24 final size:26
Alignment explanation
Indices: 11016604--11016656 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
11016594 ATCTCGTGTA
*
11016604 TTTCTTGTATT-GAAAGTCTCT-CTT
1 TTTCTTGTATTCGAAACTCTCTCCTT
*
11016628 TTTCTTGTATTCGAATCTCTCTCCTT
1 TTTCTTGTATTCGAAACTCTCTCCTT
11016654 TTT
1 TTT
11016657 TCTCCAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 11 0.44
25 8 0.32
26 6 0.24
ACGTcount: A:0.13, C:0.21, G:0.09, T:0.57
Consensus pattern (26 bp):
TTTCTTGTATTCGAAACTCTCTCCTT
Found at i:11016655 original size:25 final size:24
Alignment explanation
Indices: 11016604--11016655 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 24
11016594 ATCTCGTGTA
* *
11016604 TTTCTTGTATTGAAAGTCTCTCTT
1 TTTCTTGTATTGAAACTCTCTCCT
*
11016628 TTTCTTGTATTCGAATCTCTCTCCT
1 TTTCTTGTATT-GAAACTCTCTCCT
11016653 TTT
1 TTT
11016656 TTCTCCAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 11 0.46
25 13 0.54
ACGTcount: A:0.13, C:0.21, G:0.10, T:0.56
Consensus pattern (24 bp):
TTTCTTGTATTGAAACTCTCTCCT
Found at i:11016788 original size:24 final size:24
Alignment explanation
Indices: 11016756--11016805 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
11016746 TCTTTTTGCA
11016756 GGCAAGTAGGGTGATGGAGTTAGT
1 GGCAAGTAGGGTGATGGAGTTAGT
11016780 GGCAAGTAGGGTGATGGAGTTAGT
1 GGCAAGTAGGGTGATGGAGTTAGT
11016804 GG
1 GG
11016806 TTGGTTTAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.04, G:0.48, T:0.24
Consensus pattern (24 bp):
GGCAAGTAGGGTGATGGAGTTAGT
Found at i:11017358 original size:177 final size:176
Alignment explanation
Indices: 11017092--11017439 Score: 507
Period size: 177 Copynumber: 2.0 Consensus size: 176
11017082 GAGAAGAGAT
* * *
11017092 TTGTAGCTTGAAGCTGCCCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATTTACTCCA
1 TTGTAGCTTGAACCTGCCCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTACGCCA
* * * * *
11017157 TTGTCGCTACATGGAGATAAGATTCGCCCTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAG
66 TTGCCACTACATGAAGATAAGATTCGCCCTCTTCAATCTGCTCCACTACTACTTAGAGAGATAAG
11017222 ATCTACAATTTTCAGTCTGCTCCACTGCAACTTCAAGGAGATAAGAC
131 ATCTACAATTTTCAGTCTGCTCCACTGCAAC-TCAAGGAGATAAGAC
* * * * *
11017269 TTGTATCTTGAACCTGCTCTACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCGCCA
1 TTGTAGCTTGAACCTGCCCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTACGCCA
* * **
11017334 TTGCCACTACATGAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTGCTGGTTAGAGAGATAAG
66 TTGCCACTACATGAAGATAAGATTCGCCCTCTTCAATCTGCTCCACTACTACTTAGAGAGATAAG
* * *
11017399 ATCTGCAATTTTCAGTCTGCTTCACTGCAACTCAGGGAGAT
131 ATCTACAATTTTCAGTCTGCTCCACTGCAACTCAAGGAGAT
11017440 GAGGCTAGTA
Statistics
Matches: 151, Mismatches: 20, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
176 9 0.06
177 142 0.94
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (176 bp):
TTGTAGCTTGAACCTGCCCCACTGCAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTACGCCA
TTGCCACTACATGAAGATAAGATTCGCCCTCTTCAATCTGCTCCACTACTACTTAGAGAGATAAG
ATCTACAATTTTCAGTCTGCTCCACTGCAACTCAAGGAGATAAGAC
Found at i:11017533 original size:88 final size:88
Alignment explanation
Indices: 11017432--11017617 Score: 282
Period size: 88 Copynumber: 2.1 Consensus size: 88
11017422 ACTGCAACTC
*
11017432 AGGGAGATGAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATC
1 AGGGAGATAAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATC
*
11017497 TTCGATCTGTTCCACTACTGCTT
66 TTCGATCTGCTCCACTACTGCTT
* ** * * *
11017520 AGGGAGATAAGGCTAGTGGTTTAAATCTGCTTCCCTAGTACCTCGGGAAGATAATATTCGCCATC
1 AGGGAGATAAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATC
*
11017585 TTCGATCTGCTCCACTACTGTTT
66 TTCGATCTGCTCCACTACTGCTT
*
11017608 AGAGAGATAA
1 AGGGAGATAA
11017618 AATCTGCAAT
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (88 bp):
AGGGAGATAAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATC
TTCGATCTGCTCCACTACTGCTT
Found at i:11017572 original size:220 final size:219
Alignment explanation
Indices: 11017300--11017970 Score: 884
Period size: 220 Copynumber: 3.1 Consensus size: 219
11017290 CTGCAACTTC
* * *
11017300 AGGGAGATAAGGCTGGTGGCTTAAATCTGCGCCATTGCC-ACTACAT---GAAGATAAGATTCGC
1 AGGGAGATAAGGCTAGTGGCTTAAATCT--G-C-TTCCCTACTACCTCGGGAAGATAAGATTCGC
* * * * *
11017361 CGTCTTCAATCTGCTCCACTGCTGGTTAGAGAGATAAGATCTGCAATTTTCAGTCTGCTTCACTG
62 CGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCAG-CTGCTCCACTA
** * * *
11017426 CAACTCAGGGAGATGAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTC
126 CTGCTTAGGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTC
* *
11017491 ACCATCTTCGATCTGTTCCACTACTGCTT
191 GCCATCTTCGATCTGCTCCACTACTGCTT
* * * *
11017520 AGGGAGATAAGGCTAGTGGTTTAAATCTGCTTCCCTAGTACCTCGGGAAGATAATATTCGCCATC
1 AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTC
* * * *
11017585 TTCGATCTGCTCCACTACTGTTTAGAGAGATAAAATCTGCAATTATT-AGCCCGCTCCGCTACTG
66 TTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATT-TTCAG-CTGCTCCACTACTG
* * * *
11017649 CTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTGTC
129 CTTAGGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCC
*
11017714 GTCTTCGATCTGCTCCACTACTGCTT
194 ATCTTCGATCTGCTCCACTACTGCTT
* * *
11017740 AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTGTCGTC
1 AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTC
* * *
11017805 TTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCATACTCCACTACTGC
66 TTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCAGC-TGCTCCACTACTGC
* * *
11017870 TTAAGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATCCGCCA
130 TTAGGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCA
* *
11017935 TCTTTGATCTGCTCCACTACTGTTT
195 TCTTCGATCTGCTCCACTACTGCTT
11017960 AGGGAGATAAG
1 AGGGAGATAAG
11017971 ATCTGCAATC
Statistics
Matches: 392, Mismatches: 52, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
216 4 0.01
217 6 0.02
218 1 0.00
219 3 0.01
220 376 0.96
221 2 0.01
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (219 bp):
AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTC
TTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTTTCAGCTGCTCCACTACTGCT
TAGGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCAT
CTTCGATCTGCTCCACTACTGCTT
Found at i:11017594 original size:45 final size:45
Alignment explanation
Indices: 11017456--11017603 Score: 124
Period size: 44 Copynumber: 3.3 Consensus size: 45
11017446 AGTAGCCTAA
*
11017456 ATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATCTTCG
1 ATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCG
* * * ** * *** **
11017501 ATCTG-TTCCACTACTGCTTAGGG-AGATAAGGCTAGTGGT-TTAA
1 ATCTGCTTCC-CTACTACCTCGGGAAGATAAGATTCGCCATCTTCG
* *
11017544 ATCTGCTTCCCTAGTACCTCGGGAAGATAATATTCGCCATCTTCG
1 ATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCG
11017589 ATCTGC-TCCACTACT
1 ATCTGCTTCC-CTACT
11017604 GTTTAGAGAG
Statistics
Matches: 72, Mismatches: 26, Indels: 10
0.67 0.24 0.09
Matches are distributed among these distances:
43 16 0.22
44 29 0.40
45 27 0.38
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (45 bp):
ATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCGCCATCTTCG
Found at i:11017616 original size:132 final size:132
Alignment explanation
Indices: 11017507--11017750 Score: 389
Period size: 132 Copynumber: 1.8 Consensus size: 132
11017497 TTCGATCTGT
* *
11017507 TCCACTACTGCTTAGGGAGATAAGGCTAGTGGTTTAAATCTGCTTCCCTAGTACCTCGGGAAGAT
1 TCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGAT
* * *
11017572 AATATTCGCCATCTTCGATCTGCTCCACTACTGTTTAGAGAGATAAAATCTGCAATTATTAGCCC
66 AAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTATTAGCCC
11017637 GC
131 GC
* *
11017639 TCCGCTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGAT
1 TCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGAT
* * * *
11017704 AAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
66 AAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAG
11017751 GCTAGTGGCT
Statistics
Matches: 101, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
132 101 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (132 bp):
TCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGAT
AAGATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATTATTAGCCC
GC
Found at i:11017704 original size:44 final size:44
Alignment explanation
Indices: 11017656--11017794 Score: 167
Period size: 44 Copynumber: 3.2 Consensus size: 44
11017646 CTGCTTAGGG
11017656 AGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGA
1 AGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGA
** * * ** *
11017700 AGATAAGATTTGTCGTCTTCGATCTGC-TCCACTACT-GCTTAGGG-
1 AGATAAGGCTAGT-GGCTTAAATCTGCTTCC-CTACTACCTT-GGGA
11017744 AGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGA
1 AGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGA
11017788 AGATAAG
1 AGATAAG
11017795 ATTTGTCGTC
Statistics
Matches: 75, Mismatches: 14, Indels: 12
0.74 0.14 0.12
Matches are distributed among these distances:
43 18 0.24
44 39 0.52
45 18 0.24
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (44 bp):
AGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGA
Found at i:11017704 original size:88 final size:88
Alignment explanation
Indices: 11017628--11017838 Score: 298
Period size: 88 Copynumber: 2.4 Consensus size: 88
11017618 AATCTGCAAT
*
11017628 TATTAG-CCCGCTCCGCTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTA
1 TATTAGACCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTA
* *
11017692 CCTTGGGAAGATAAGATTTGTCG
66 CCTTGGGAAGATAAAATCTGTCG
* * * *
11017715 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTA
1 TATTAGACCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTA
* *
11017780 CCTTGGGAAGATAAGATTTGTCG
66 CCTTGGGAAGATAAAATCTGTCG
* * * *
11017803 TCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAG
1 TATTAGACCCGCTCCACTACTGCTTAGGGAGATAAG
11017839 ATCTGCAATC
Statistics
Matches: 118, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
87 4 0.03
88 114 0.97
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (88 bp):
TATTAGACCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTA
CCTTGGGAAGATAAAATCTGTCG
Found at i:11017727 original size:45 final size:44
Alignment explanation
Indices: 11017676--11019906 Score: 333
Period size: 44 Copynumber: 50.7 Consensus size: 44
11017666 AGTGGCTTAA
11017676 ATCTGCTTCC-CTACTACCTT-GGGAAGATAAGATTTGTCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAGGG-AGATAAGATTTGTCGTCTTCG
* ** * * **
11017721 ATCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGT-GGCTTAA
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
11017764 ATCTGCTTCC-CTACTACCTT-GGGAAGATAAGATTTGTCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAGGG-AGATAAGATTTGTCGTCTTCG
* * *
11017809 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTG-CAATCTTC-
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC-GTCTTCG
* * * * ** * * * **
11017852 AGCATACTCCACTACTGCTTAAGGAGATAAGGCTAGT-GGCCTAA
1 ATC-TGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* * ** * * *
11017896 ATCTGCTTCC-CTACTACC-TCGGAAAGATAAGATCCGCCATCTTTG
1 ATCTGC-TCCACTACT-CCTTAGG-GAGATAAGATTTGTCGTCTTCG
** * *
11017941 ATCTGCTCCACTACTGTTTAGGGAGATAAGATCTG-CAATCTTC-
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC-GTCTTCG
* * * ** * * * **
11017984 AGCCTGCTCCACTACTGCTTAAGGAGATAAGGCTAGT-GGCCTAA
1 A-TCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* * ** * *
11018028 ATCTGCTTCC-CTACTACC-TCGGAAAGATAAGATCCGCCGTCTTTG
1 ATCTGC-TCCACTACT-CCTTAGG-GAGATAAGATTTGTCGTCTTCG
* * * ****
11018073 ATCTGCTCCACTACTTCTTAAGGAGATAAGATCTAAAATCTTC-
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* * * * * **
11018116 AGCCTGCTCCACTACTTCTTAGGGAGATAAGACTAGT-GGCTTAA
1 A-TCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* *
11018160 ATCTGCTTCC-CTACTACC-TCGGGAAGATAAGATTCG-CTGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAGGG-AGATAAGATTTGTC-GTCTTCG
* * **
11018205 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TATC-
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCT-TCG
* * ** * **
11018248 ATCCTGCTCCACTACTACTTAGGGAGATAAGACTAAT-GGCTTAA
1 AT-CTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* ** * *
11018292 ATCTGCTTCC-CTACTACC-TCGAAAAGATAAGATTCGCCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAG-GGAGATAAGATTTGTCGTCTTCG
* ** * * *
11018337 ATCTGCTCCATTACTGTTTAGGGAGATAAGATCTG-CAATCTT-T
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC-GTCTTCG
* * * * * **
11018380 AGCCTGCTCCACTACTGCTTAGGGAGATAATG-CTAGT-GGCTTAA
1 A-TCTGCTCCACTACTCCTTAGGGAGATAA-GATTTGTCGTCTTCG
* * * ***
11018424 ATCTACTTCC-CTACTACC-TCGGAAAGATAAGATTCACCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAGG-GAGATAAGATTTGTCGTCTTCG
* * * * * * *
11018469 ATCTGCTCTACTACTACTTAGGGAGATAGGATCTG-CAATTATTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC--GTCTTCG
* ** * * * **
11018514 -CCCACTCCACTACTTCTTAGGGAGATAA-AGCTTGT-GGCTTAA
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGA-TTTGTCGTCTTCG
* * * * *
11018556 ATTTGCTTCC-CTACTACC-TCGGGAAGATAAGATTCGCCATCTTCG
1 ATCTGC-TCCACTACT-CCTTAGGG-AGATAAGATTTGTCGTCTTCG
* * ** **
11018601 ATTTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAAT-TTTT
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* * ** * * **
11018644 ACCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGT-GGCTTAA
1 A-TCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* * * *
11018688 ATCTACTTCC-CTACTACC-TCGGAAAGATAAGATTCGTCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAGG-GAGATAAGATTTGTCGTCTTCG
* ** * *
11018733 ATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGT-CGTCTTCG
* * * * * ** * * **
11018778 -CCCGCTCTATTACTGCTTAGGGAGATAAGGCTAGT-GGCTTAA
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* ** * *
11018820 ATCTGCTTCC-CTACTACCTCAGAAAGATAAGATTCGCCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAGGGAGATAAGATTTGTCGTCTTCG
* * * * * *
11018865 ATCTTCTCCACTACTACTTAGGGAGATAGGATCTG-CAATCATTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC-GTC-TTCG
* * * * * * * **
11018910 -CCCGCTCCATTACTGCTTAGGGAGATAA-AGCTAGT-GGCTTAA
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGA-TTTGTCGTCTTCG
* * * ***
11018952 ATCTACTTCC-CTACTACC-TCGAGAAGATAAGATTCACCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAG-GGAGATAAGATTTGTCGTCTTCG
* * * * * *
11018997 ATCTGCTCTACTACTACTTAGGGAGATAGGATCTG-CAATCATTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC-GTC-TTCG
* ** * * ** * * **
11019042 -CCCACTCCATTACTGCTTAGGGAGATAAGGCTAGT-GGCTTAA
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
11019084 ATCTGCTTCC-CTACTACCTT-GGGAAGATAAGATTTGTCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAGGG-AGATAAGATTTGTCGTCTTCG
* ** * *
11019129 ATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGT-CGTCTTCG
* * * * * ** * * **
11019174 -CCCGCTCTATTACTGCTTAGGGAGATAAGGCTAGT-GGCTTAA
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* ** * *
11019216 ATCTGCTTCC-CTACTACC-TCGAAAAGATAAGATTCGCCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAG-GGAGATAAGATTTGTCGTCTTCG
* * * * * *
11019261 ATCTGCTCCACTACTACTTAGAGAGATAGGATATG-CAATCATTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC-GTC-TTCG
* * * * * * *
11019306 -CCCGCTCCACTACTGCTTAGGGAGATAAGATCTG-CAATTATTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC--GTCTTCG
* * * * ** * * **
11019350 -CCCGCTCCATTACTGCTTAGGGAGATAAGGCTAGT-GGCTTAA
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* ** * *
11019392 ATCTGCTTCC-CTACTACC-TCGAAAAGATAAGATTCGCCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAG-GGAGATAAGATTTGTCGTCTTCG
* * * * *
11019437 ATCTGCTCCACTACTACTTAGGGAGATAGGATCTG-CAATCATTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC-GTC-TTCG
* ** * * ** * * **
11019482 -CCCACTCCATTACTGCTTAGGGAGATAAGGCTAGT-GGCTTAA
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* * * * *
11019524 ATCTACTTCC-CTACTACC-TCGAGAAGATAAGATTCGCCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAG-GGAGATAAGATTTGTCGTCTTCG
* * * * *
11019569 ATTTGCTCCACTACTGCTTAGAGAGATAAGATCTG-CAATCTTC-
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC-GTCTTCG
* * ** * * **
11019612 AGCCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGT-GGCTTAA
1 A-TCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* ** * *
11019656 ATCTGCTTCC-CTACTACC-TCGAAAAGATAAGATTCGCCGTCTTCG
1 ATCTGC-TCCACTACT-CCTTAG-GGAGATAAGATTTGTCGTCTTCG
* * * * * *
11019701 ATCTGCTCCACTACTACTTAGAGAGATAGGATCTG-CAATCATTAG
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTC-GTC-TTCG
* * * * * **
11019746 -CCCGCTCCACTACTGCTTAGGGAGATAAGGA-TAGT-GGCTTAA
1 ATCTGCTCCACTACTCCTTAGGGAGATAA-GATTTGTCGTCTTCG
* * * * * ***
11019788 ATTTGCTTCTCTACTACC-TCGAGAAGATAAGATTCACCGTCTTCG
1 ATCTGCTCCACTACT-CCTTAG-GGAGATAAGATTTGTCGTCTTCG
* * * **
11019833 ATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTC-
1 ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
* *
11019876 AGCCTGCTCCACTACTGCTTAGGGAGATAAG
1 A-TCTGCTCCACTACTCCTTAGGGAGATAAG
11019907 GCTAGTGGCT
Statistics
Matches: 1515, Mismatches: 513, Indels: 317
0.65 0.22 0.14
Matches are distributed among these distances:
42 24 0.02
43 213 0.14
44 960 0.63
45 318 0.21
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (44 bp):
ATCTGCTCCACTACTCCTTAGGGAGATAAGATTTGTCGTCTTCG
Found at i:11018012 original size:264 final size:263
Alignment explanation
Indices: 11017725--11019334 Score: 2299
Period size: 264 Copynumber: 6.1 Consensus size: 263
11017715 TCTTCGATCT
* *
11017725 GCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAG
1 GCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAG
* * *
11017790 ATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGC
66 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTTAGC
* * * * *
11017855 ATACTCCACTACTGCTTAAGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAA
131 CTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAA
* * * **
11017920 AGATAAGATCCGCCATCTTTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGCAATCT-TC
196 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAAT-TAT-
*
11017984 AGCCT
259 AGCCC
* *
11017989 GCTCCACTACTGCTTAAGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAG
1 GCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAG
* * * * ** *
11018054 ATAAGATCCGCCGTCTTTGATCTGCTCCACTACTTCTTAAGGAGATAAGATCTAAAATCTTCAGC
66 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTTAGC
* * * *
11018119 CTGCTCCACTACTTCTTAGGGAGATAAGACTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGA
131 CTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAA
* * *
11018184 AGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTATCA
196 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTAT-A
* *
11018249 TCCT
260 GCCC
* * * *
11018253 GCTCCACTACTACTTAGGGAGATAAGACTAATGGCTTAAATCTGCTTCCCTACTACCTCGAAAAG
1 GCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAG
* *
11018318 ATAAGATTCGCCGTCTTCGATCTGCTCCATTACTGTTTAGGGAGATAAGATCTGCAATCTTTAGC
66 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTTAGC
*
11018383 CTGCTCCACTACTGCTTAGGGAGATAATGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAA
131 CTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAA
* * *
11018448 AGATAAGATTCACCGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCAATTATTA
196 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTA-TA
11018513 GCCC
260 GCCC
* * * * * *
11018517 ACTCCACTACTTCTTAGGGAGATAAAGCTTGTGGCTTAAATTTGCTTCCCTACTACCTCGGGAAG
1 GCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAG
* * * * * *
11018582 ATAAGATTCGCCATCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTTACC
66 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTTAGC
11018647 CTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAA
131 CTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAA
* * *
11018712 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTA
196 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTA-TA
11018777 GCCC
260 GCCC
* * *
11018781 GCTCTATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCAGAAAG
1 GCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAG
* * * *
11018846 ATAAGATTCGCCGTCTTCGATCTTCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGC
66 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTTAGC
* * *
11018911 CCGCTCCATTACTGCTTAGGGAGATAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTC-GAG
131 CTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGA-
* * * *
11018975 AAGATAAGATTCACCGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCAATCATT
195 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTA-T
11019040 AGCCC
259 AGCCC
* * * *
11019045 ACTCCATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAG
1 GCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAG
* * * * *
11019110 ATAAGATTTGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAAT-TATTAG
66 ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCT-TTAG
* * * * *
11019174 CCCGCTCTATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAA
130 CCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGA
* * * *
11019239 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATT
195 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTA-T
11019304 AGCCC
259 AGCCC
11019309 GCTCCACTACTGCTTAGGGAGATAAG
1 GCTCCACTACTGCTTAGGGAGATAAG
11019335 ATCTGCAATT
Statistics
Matches: 1212, Mismatches: 129, Indels: 10
0.90 0.10 0.01
Matches are distributed among these distances:
263 3 0.00
264 1207 1.00
265 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (263 bp):
GCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAG
ATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTTAGC
CTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGAA
AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTATAG
CCC
Found at i:11018058 original size:220 final size:219
Alignment explanation
Indices: 11017434--11018102 Score: 575
Period size: 220 Copynumber: 3.0 Consensus size: 219
11017424 TGCAACTCAG
* * * * *
11017434 GGAGATGAGGCTAGTAGCCTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATTCACCATCTT
1 GGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATCCGCCATCTT
* * * * * *
11017499 CGATCTGTTCCACTACTGCTTAGGGAGATAAGGCTAGTGGTTTAAATCTGCTTCCCTAGTACCTC
66 CGATCTGCTCCACTACTGCTTAGGGAGATAAGGCTAAT-GCTTAAACCTGCTTCCCTACTACCTT
* * * * * ** * ** *** * *
11017564 GGGAAGATAATATTCGCCATCTTCGATCTGCTCCACTACTGTTTA-GAGAGATAAAATCTGCAAT
130 AGGAAGATAAGACTAGTCGGCCTAAATCTGCTCCACTACTACCTAGGA-AGATAAGATCCGCAAT
** * *
11017628 -TATT-AGCCCGCTCCGCTACTGCTTAG
194 CT-TTCAG-CTACTCCACTACTGCTTAA
* * * ** * *
11017654 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTGTCGTCTT
1 GGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATCCGCCATCTT
* *
11017719 CGATCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT
66 CGATCTGCTCCACTACTGCTTAGGGAGATAAGGCTAAT-GCTTAAACCTGCTTCCCTACTACCTT
* * * * * ** * * * *
11017784 GGGAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATC
130 AGGAAGATAAGACTAGTCGGCCTAAATCTGCTCCACTACTACCTAGGAAGATAAGATCCGCAATC
11017849 -TTCAGCATACTCCACTACTGCTTAA
195 TTTCAGC-TACTCCACTACTGCTTAA
11017874 GGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATCCGCCATCTT
1 GGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATCCGCCATCTT
* * * * * *
11017939 TGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGCAAT-CTTCAGCCTGC-TCCACTACT-G
66 CGATCTGCTCCACTACTGCTTAGGGAGATAAG-GCT--AATGCTTAAACCTGCTTCC-CTACTAC
* *
11018001 CTTAAGG-AGATAAGGCTAGT-GGCCTAAATCTGCTTCC-CTACTACCTCGGAAAGATAAGATCC
127 CTT-AGGAAGATAAGACTAGTCGGCCTAAATCTGC-TCCACTACTACCTAGG-AAGATAAGATCC
** * * * *
11018063 GCCGTCTTTGATCTGCTCCACTACTTCTTAA
189 GCAATCTTTCAGCTACTCCACTACTGCTTAA
11018094 GGAGATAAG
1 GGAGATAAG
11018103 ATCTAAAATC
Statistics
Matches: 380, Mismatches: 57, Indels: 24
0.82 0.12 0.05
Matches are distributed among these distances:
219 21 0.06
220 335 0.88
221 22 0.06
223 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (219 bp):
GGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATCCGCCATCTT
CGATCTGCTCCACTACTGCTTAGGGAGATAAGGCTAATGCTTAAACCTGCTTCCCTACTACCTTA
GGAAGATAAGACTAGTCGGCCTAAATCTGCTCCACTACTACCTAGGAAGATAAGATCCGCAATCT
TTCAGCTACTCCACTACTGCTTAA
Found at i:11018157 original size:396 final size:397
Alignment explanation
Indices: 11017725--11019335 Score: 2369
Period size: 396 Copynumber: 4.1 Consensus size: 397
11017715 TCTTCGATCT
*
11017725 GCTCCACTACTGCTTAGGGAGATAAG-GCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAA
1 GCTCCACTACTGCTTAGGGAGATAAGAGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAA
* *
11017789 GATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAG
66 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAG
* * *
11017854 CATACTCCACTACTGCTTAAGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGA
131 CCTACTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGA
* * * **
11017919 AAGATAAGATCCGCCATCTTTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGCAATCT-T
196 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAAT-TAT
* * * *
11017983 CAGCCTGCTCCACTACTGCTTAAGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTC
260 TAGCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTC
* * * * **
11018048 GGAAAGATAAGATCCGCCGTCTTTGATCTGCTCCACTACTTCTTAAGGAGATAAGATCTAAAATC
325 GGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAAGGAGATAGGATCTGCAATC
*
11018113 -TTCAGCCT
390 ATT-AGCCC
*
11018121 GCTCCACTACTTCTTAGGGAGATAAGA-CTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAA
1 GCTCCACTACTGCTTAGGGAGATAAGAGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAA
* *
11018185 GATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAAT-TATCA
66 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCT-TCA
* * * * * *
11018249 TCCTGCTCCACTACTACTTAGGGAGATAAGACTAATGGCTTAAATCTGCTTCCCTACTACCTCGA
130 GCCTACTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
* **
11018314 AAAGATAAGATTCGCCGTCTTCGATCTGCTCCATTACTGTTTAGGGAGATAAGATCTGCAATCT-
195 AAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAAT-TA
* * *
11018378 TTAGCCTGCTCCACTACTGCTTAGGGAGATAATGCTAGTGGCTTAAATCTACTTCCCTACTACCT
259 TTAGCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCT
* * *
11018443 CGGAAAGATAAGATTCACCGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCAAT
324 CGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAAGGAGATAGGATCTGCAAT
*
11018508 TATTAGCCC
389 CATTAGCCC
* * * *
11018517 ACTCCACTACTTCTTAGGGAGATAA-AGCTTGTGGCTTAAATTTGCTTCCCTACTACCTCGGGAA
1 GCTCCACTACTGCTTAGGGAGATAAGAGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAA
* * * * * * *
11018581 GATAAGATTCGCCATCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTTAC
66 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAG
* *
11018646 CCTGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGGA
131 CCTACTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGA
* * *
11018711 AAGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATT
196 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTATT
* * *
11018776 AGCCCGCTCTATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCA
261 AGCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCG
* *
11018841 GAAAGATAAGATTCGCCGTCTTCGATCTTCTCCACTACTACTTAGGGAGATAGGATCTGCAATCA
326 GAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAAGGAGATAGGATCTGCAATCA
11018906 TTAGCCC
391 TTAGCCC
* * *
11018913 GCTCCATTACTGCTTAGGGAGATAA-AGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAA
1 GCTCCACTACTGCTTAGGGAGATAAGAGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAA
* * * *
11018977 GATAAGATTCACCGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCAATCATT-A
66 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATC-TTCA
* * *
11019041 GCCCACTCCATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGG
130 GCCTACTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGG
* * * * *
11019106 GAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTAT
195 AAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTAT
* *
11019171 TAGCCCGCTCTATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTC
260 TAGCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTC
* *
11019236 GAAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTT-AGAGAGATAGGATATGCAAT
325 GGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAAG-GAGATAGGATCTGCAAT
11019300 CATTAGCCC
389 CATTAGCCC
11019309 GCTCCACTACTGCTTAGGGAGATAAGA
1 GCTCCACTACTGCTTAGGGAGATAAGA
11019336 TCTGCAATTA
Statistics
Matches: 1111, Mismatches: 95, Indels: 17
0.91 0.08 0.01
Matches are distributed among these distances:
395 4 0.00
396 1101 0.99
397 6 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (397 bp):
GCTCCACTACTGCTTAGGGAGATAAGAGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAA
GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAG
CCTACTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGA
AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATTATT
AGCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCG
GAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAAGGAGATAGGATCTGCAATCA
TTAGCCC
Found at i:11019360 original size:308 final size:308
Alignment explanation
Indices: 11019001--11019642 Score: 1061
Period size: 308 Copynumber: 2.1 Consensus size: 308
11018991 TCTTCGATCT
* * *
11019001 GCTCTACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGAG
* ** * *
11019066 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTGTCGTCTTCGAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
* * * * *
11019131 CTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTAGCCCGCTCTATTACTGCTTAGGG
131 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGG
*
11019196 AGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCG
196 AGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCG
*
11019261 ATCTGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATT-AGCCC
261 ATCTGCTCCACTACTACTTAGAGAGATAAGATATGCAATC-TTCAGCCC
* *
11019309 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCATTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGAG
11019374 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
*
11019439 CTGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGG
131 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGG
*
11019504 AGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTCG
196 AGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCG
* * * *
11019569 ATTTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATCTTCAGCCT
261 ATCTGCTCCACTACTACTTAGAGAGATAAGATATGCAATCTTCAGCCC
11019617 GCTCCACTACTGCTTAGGGAGATAAG
1 GCTCCACTACTGCTTAGGGAGATAAG
11019643 GCTAGTGGCT
Statistics
Matches: 310, Mismatches: 23, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
307 2 0.01
308 308 0.99
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (308 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGAG
ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGG
AGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCG
ATCTGCTCCACTACTACTTAGAGAGATAAGATATGCAATCTTCAGCCC
Found at i:11019378 original size:132 final size:130
Alignment explanation
Indices: 11017725--11019334 Score: 1659
Period size: 132 Copynumber: 12.2 Consensus size: 130
11017715 TCTTCGATCT
** * *
11017725 GCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTA-AATCTGCTTCCCTACTACCTTGGGAA
1 GCTCCACTACTGCTTAGGGAGATAA-GCTAGTGGCTTATAGCCCGC-TCCCTACTACC-TCGGAA
* * *
11017789 GATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGCAATC-TTCA
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATT-A
**
11017853 GCAT
127 GCCC
* * * ** *
11017857 ACTCCACTACTGCTTAAGGAGATAAGGCTAGTGGCCTA-AATCTGCTTCCCTACTACCTCGGAAA
1 GCTCCACTACTGCTTAGGGAGATAA-GCTAGTGGCTTATAGCCCGC-TCCCTACTACCTCGG-AA
* * * **
11017921 GATAAGATCCGCCATCTTTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGCAATC-TTCA
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATT-A
*
11017985 GCCT
127 GCCC
* * ** *
11017989 GCTCCACTACTGCTTAAGGAGATAAGGCTAGTGGCCTA-AATCTGCTTCCCTACTACCTCGGAAA
1 GCTCCACTACTGCTTAGGGAGATAA-GCTAGTGGCTTATAGCCCGC-TCCCTACTACCTCGG-AA
* * * * **
11018053 GATAAGATCCGCCGTCTTTGATCTGCTCCACTACTTCTTAAGGAGATAAGATCTAAAATC-TTCA
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATT-A
*
11018117 GCCT
127 GCCC
* ** *
11018121 GCTCCACTACTTCTTAGGGAGATAAGACTAGTGGCTTA-AATCTGCTTCCCTACTACCTCGGGAA
1 GCTCCACTACTGCTTAGGGAGATAAG-CTAGTGGCTTATAGCCCGC-TCCCTACTACCTC-GGAA
* * * * * *
11018185 GATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTATCAT
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAG
*
11018250 CCT
128 CCC
* * ** * *
11018253 GCTCCACTACTACTTAGGGAGATAAGACTAATGGCTTA-AATCTGCTTCCCTACTACCTCGAAAA
1 GCTCCACTACTGCTTAGGGAGATAAG-CTAGTGGCTTATAGCCCGC-TCCCTACTACCTCG-GAA
* ** *
11018317 GATAAGATTCGCCGTCTTCGATCTGCTCCATTACTGTTTAGGGAGATAAGATCTGCAATCTTTAG
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAG
*
11018382 CCT
128 CCC
* * * *
11018385 GCTCCACTACTGCTTAGGGAGATAATGCTAGTGGCTTAAATCTAC-TTCCCTACTACCTCGGAAA
1 GCTCCACTACTGCTTAGGGAGATAA-GCTAGTGGCTTATAGC-CCGCTCCCTACTACCTCGG-AA
* * * *
11018449 GATAAGATTCACCGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCAATTATTAG
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAG
11018514 CCC
128 CCC
* * * ****
11018517 ACTCCACTACTTCTTAGGGAGATAAAGCTTGTGGCTTA-AATTTGCTTCCCTACTACCTCGGGAA
1 GCTCCACTACTGCTTAGGGAGAT-AAGCTAGTGGCTTATAGCCCGC-TCCCTACTACCTC-GGAA
* * * * * **
11018581 GATAAGATTCGCCATCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATTTGTAATTTTTA-
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAG
11018645 CCC
128 CCC
* * * *
11018648 TGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTAC-TTCCCTACTACCTCGGAA
1 -GCTCCACTACTGCTTAGGGAGATAA-GCTAGTGGCTTATAGC-CCGCTCCCTACTACCTCGG-A
* * * *
11018712 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTA
62 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTA
11018777 GCCC
127 GCCC
* * ** * *
11018781 GCTCTATTACTGCTTAGGGAGATAAGGCTAGTGGCTTA-AATCTGCTTCCCTACTACCTCAGAAA
1 GCTCCACTACTGCTTAGGGAGATAA-GCTAGTGGCTTATAGCCCGC-TCCCTACTACCTC-GGAA
* *
11018845 GATAAGATTCGCCGTCTTCGATCTTCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAG
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAG
11018910 CCC
128 CCC
* * * * *
11018913 GCTCCATTACTGCTTAGGGAGATAAAGCTAGTGGCTTAAATCTAC-TTCCCTACTACCTCGAGAA
1 GCTCCACTACTGCTTAGGGAGAT-AAGCTAGTGGCTTATAGC-CCGCTCCCTACTACCTCG-GAA
* * *
11018977 GATAAGATTCACCGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCAATCATTAG
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAG
11019042 CCC
128 CCC
* * ** * *
11019045 ACTCCATTACTGCTTAGGGAGATAAGGCTAGTGGCTTA-AATCTGCTTCCCTACTACCTTGGGAA
1 GCTCCACTACTGCTTAGGGAGATAA-GCTAGTGGCTTATAGCCCGC-TCCCTACTACC-TCGGAA
* * * * *
11019109 GATAAGATTTGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTAG
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAG
11019174 CCC
128 CCC
* * ** * *
11019177 GCTCTATTACTGCTTAGGGAGATAAGGCTAGTGGCTTA-AATCTGCTTCCCTACTACCTCGAAAA
1 GCTCCACTACTGCTTAGGGAGATAA-GCTAGTGGCTTATAGCCCGC-TCCCTACTACCTCG-GAA
* * *
11019241 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATTAG
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAG
11019306 CCC
128 CCC
11019309 GCTCCACTACTGCTTAGGGAGATAAG
1 GCTCCACTACTGCTTAGGGAGATAAG
11019335 ATCTGCAATT
Statistics
Matches: 1306, Mismatches: 141, Indels: 63
0.86 0.09 0.04
Matches are distributed among these distances:
131 21 0.02
132 1266 0.97
133 19 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (130 bp):
GCTCCACTACTGCTTAGGGAGATAAGCTAGTGGCTTATAGCCCGCTCCCTACTACCTCGGAAGAT
AAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCC
Found at i:11019420 original size:132 final size:132
Alignment explanation
Indices: 11019309--11020260 Score: 1397
Period size: 132 Copynumber: 7.2 Consensus size: 132
11019299 TCATTAGCCC
*
11019309 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCATTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCACTACTGCTTAGGGAG
11019374 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
11019439 CT
131 CT
* * * * *
11019441 GCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCACTACTGCTTAGGGAG
* *
11019506 ATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTCGAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
*
11019571 TT
131 CT
* * *
11019573 GCTCCACTACTGCTTAGAGAGATAAGATCTGCAATCT-TCAGCCTGCTCCACTACTGCTTAGGGA
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TATTAGCCCGCTCCACTACTGCTTAGGGA
11019637 GATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGA
65 GATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGA
11019702 TCT
130 TCT
* * * *
11019705 GCTCCACTACTACTTAGAGAGATAGGATCTGCAATCATTAGCCCGCTCCACTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCACTACTGCTTAGGGAG
* * * * *
11019770 ATAAGGATAGTGGCTTAAATTTGCTTCTCTACTACCTCGAGAAGATAAGATTCACCGTCTTCGAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
*
11019835 TT
131 CT
* * *
11019837 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCT-TCAGCCTGCTCCACTACTGCTTAGGGA
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TATTAGCCCGCTCCACTACTGCTTAGGGA
* * * *
11019901 GATAAGGCTAGTGGCTTAAATCTACTTCCCTATTACCTCGAAAAGATAAGATTCACCGTCTTCAA
65 GATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGA
11019966 TCT
130 TCT
* * * *
11019969 GCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCCGCTCCATTACTGTTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCACTACTGCTTAGGGAG
* * *
11020034 ATAAGGGTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTTGAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
*
11020099 TT
131 CT
* * * * ** *
11020101 GCCCCACTACTGCTTAGGGAGATAAGATCTACAATCT-TCAGTCTACTCAACTACTGCTTAGGGA
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TATTAGCCCGCTCCACTACTGCTTAGGGA
* * ** * *
11020165 GATAAGGCTAGTGGCTTAAATCTGCTTTCTTACTACCTCGGGAATATAAGATTCGCCATCTTCGA
65 GATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGA
11020230 TCT
130 TCT
*
11020233 ACTCCACTACTGCTTAGGGAGATAAGAT
1 GCTCCACTACTGCTTAGGGAGATAAGAT
11020261 TTGTAATTTT
Statistics
Matches: 735, Mismatches: 80, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
132 735 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (132 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCACTACTGCTTAGGGAG
ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
CT
Found at i:11019510 original size:396 final size:393
Alignment explanation
Indices: 11017920--11019510 Score: 1283
Period size: 396 Copynumber: 4.0 Consensus size: 393
11017910 TACCTCGGAA
* * * * ** * * *
11017920 AGATAAGATCCGCCATCTTTGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTGCAATCT-TC
1 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAAT-TATT
* * *
11017984 AGCCTGCTCCACTACTGCTTAAGGAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCG
65 AGCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCG
* * * * * **
11018049 GAAAGATAAGATCCGCCGTCTTTGATCTGCTCCACTACTTCTTA-AGGAGATAAGATCTAAAATC
130 AAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGA-GAGATAGGATCTGCAATC
* * * * * * *
11018113 -TTCAGCCTGCTCCACTACTTCTTAGGGAGAT-AAGACTAGTGGCTTA-AATCTGCTTCCCTACT
194 ATT-AGCCCGCTCCACTACTGCTTAGGGAGATAAAGA-T-CTGGCTTATTAGC-CCCTCCCTACT
* * * ** * * *
11018175 ACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA-TCT
255 ACCTAGGG-AGATAAGATTAGC-GGCTTAAATCTGCTCC-CTACTACCTAGGAAGATAAGATTC-
* * ** **
11018239 GTAAT-TATC-ATCCTGCTCCACTACTACTTAGGGAGATAA-GA-CT--AATGGCTTAAATCTGC
316 GCAATCT-TCGA-CCTGCTCCACTACTGCTTAGGGAGATAAGGATCTGCAAT--CTTAAGCCCAC
* * * **
11018298 TTCC-CTACTACCTCGAAA
377 -TCCACTACTGCTTAG-GG
* * ** * *
11018316 AGATAAGATTCGCCGTCTTCGATCTGCTCCATTACTGTTTAGGGAGATAAGATCTGCAATCT-TT
1 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAAT-TATT
* * *
11018380 AGCCTGCTCCACTACTGCTTAGGGAGATAATGCTAGTGGCTTAAATCTACTTCCCTACTACCTCG
65 AGCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCG
* * * * *
11018445 GAAAGATAAGATTCACCGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCAATTA
130 AAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAGGATCTGCAATCA
* * * * * *
11018510 TTAGCCCACTCCACTACTTCTTAGGGAGATAAAGCTTGTGGCTTAAATTTG--CTTCCCTACTAC
195 TTAGCCCGCTCCACTACTGCTTAGGGAGATAAAG-ATCTGGCTT--ATTAGCCCCTCCCTACTAC
* * ** ** * * * * * *
11018573 CTCGGGAAGATAAGATTCGCCATCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATTTGTA
257 CTAGGG-AGATAAGATTAG-CGGCTTAAATCTGCTCC-CTACTACCTAGGAAGATAAGATTCGCA
** * ** *
11018638 AT-TTTTACCCTGCTCCACTACTGCTTAGGGAGATAAGG--CT--AGTGGCTTAAATCTACTTCC
319 ATCTTCGA-CCTGCTCCACTACTGCTTAGGGAGATAAGGATCTGCAAT--CTTAAGCCCAC-TCC
* * * *
11018698 -CTACTACCTCGGAA
380 ACTACTGCTTAGG-G
11018712 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTA
1 AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTA
* *
11018777 GCCCGCTCTATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTC-A
66 GCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGA
* *
11018841 GAAAGATAAGATTCGCCGTCTTCGATCTTCTCCACTACTACTTAGGGAGATAGGATCTGCAATCA
131 -AAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAGGATCTGCAATCA
* * * * * * *
11018906 TTAGCCCGCTCCATTACTGCTTAGGGAGATAAAGCTAGTGGCTTA-AATCTACTTCCCTACTACC
195 TTAGCCCGCTCCACTACTGCTTAGGGAGATAAAGAT-CTGGCTTATTAGC-CCCTCCCTACTACC
* * * * ** * * * *
11018970 TCGAGAAGATAAGATTCACCGTCTTCGATCTGCTCTACTACTACTTAGGGAGATAGGA-TCTGCA
258 TAG-GGAGATAAGATT-AGCGGCTTAAATCTGCTC-CCTACTACCTAGGAAGATAAGATTC-GCA
* ** * * ** **
11019034 ATCATTAG-CCCACTCCATTACTGCTTAGGGAGATAAGG--CT--AGTGGCTTAAATCTGCTTCC
319 ATC-TTCGACCTGCTCCACTACTGCTTAGGGAGATAAGGATCTGCAAT--CTTAAGCCCAC-TCC
*
11019094 -CTACTACCTT-GGG
380 ACTACT-GCTTAGGG
*
11019107 AAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATT
1 -AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATT
* *
11019172 AGCCCGCTCTATTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCG
65 AGCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCG
*
11019237 AAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAGGATATGCAATCA
130 AAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAGGATCTGCAATCA
* *
11019302 TTAGCCCGCTCCACTACTGCTTAGGGAGAT-AAGATCT-GCAATTATTAGCCCGCTCCATTACTG
195 TTAGCCCGCTCCACTACTGCTTAGGGAGATAAAGATCTGGC--TTATTAGCCC-CTCC-CTACTA
* ** * * * *
11019365 CTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCC
256 CCTAGGGAGATAAGATTAGCGGCTTAAATCTGC-TCCCTACTACCTAG-GAAGATAAGATTCGCA
* * * *
11019430 GTCTTCGATCTGCTCCACTACTACTTAGGGAGAT-AGGATCTGCAATCATT-AGCCCACTCCATT
319 ATCTTCGACCTGCTCCACTACTGCTTAGGGAGATAAGGATCTGCAATC-TTAAGCCCACTCCACT
11019493 ACTGCTTAGGG
383 ACTGCTTAGGG
11019504 AGATAAG
1 AGATAAG
11019511 GCTAGTGGCT
Statistics
Matches: 1032, Mismatches: 120, Indels: 86
0.83 0.10 0.07
Matches are distributed among these distances:
393 2 0.00
394 2 0.00
395 38 0.04
396 948 0.92
397 35 0.03
398 5 0.00
399 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (393 bp):
AGATAAGATTCGTCGTCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTA
GCCCGCTCCACTACTGCTTAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGA
AAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAGGATCTGCAATCAT
TAGCCCGCTCCACTACTGCTTAGGGAGATAAAGATCTGGCTTATTAGCCCCTCCCTACTACCTAG
GGAGATAAGATTAGCGGCTTAAATCTGCTCCCTACTACCTAGGAAGATAAGATTCGCAATCTTCG
ACCTGCTCCACTACTGCTTAGGGAGATAAGGATCTGCAATCTTAAGCCCACTCCACTACTGCTTA
GGG
Found at i:11019510 original size:440 final size:440
Alignment explanation
Indices: 11018870--11019774 Score: 1587
Period size: 440 Copynumber: 2.1 Consensus size: 440
11018860 CTTCGATCTT
* *
11018870 CTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCGCTCCATTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATTAGCCCGCTCCATTACTGCTTAGGGAGA
*
11018935 TAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCACCGTCTTCGATC
66 TAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAAAAGATAAGATTCACCGTCTTCGATC
*
11019000 TGCTCTACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGA
131 TGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGA
* * * * *
11019065 GATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTGTCGTCTTCGA
196 GATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTCGA
* * * * * *
11019130 TCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAAT-TATTAGCCCGCTCTATTACTGCTTAG
261 TCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAATCT-TCAGCCCGCTCCACTACTGCTTAG
11019194 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTT
325 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTT
11019259 CGATCTGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATTAGCCCG
390 CGATCTGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATTAGCCCG
*
11019310 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCATTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATTAGCCCGCTCCATTACTGCTTAGGGAGA
* * *
11019375 TAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGATC
66 TAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAAAAGATAAGATTCACCGTCTTCGATC
11019440 TGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGA
131 TGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGA
11019505 GATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTCGA
196 GATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTCGA
* * *
11019570 TTTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTACTGCTTAGG
261 TCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAATCTTCAGCCCGCTCCACTACTGCTTAGG
11019635 GAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTC
326 GAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTC
*
11019700 GATCTGCTCCACTACTACTTAGAGAGATAGGATCTGCAATCATTAGCCCG
391 GATCTGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATTAGCCCG
11019750 CTCCACTACTGCTTAGGGAGATAAG
1 CTCCACTACTGCTTAGGGAGATAAG
11019775 GATAGTGGCT
Statistics
Matches: 441, Mismatches: 23, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
440 440 1.00
441 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (440 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGCAATCATTAGCCCGCTCCATTACTGCTTAGGGAGA
TAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAAAAGATAAGATTCACCGTCTTCGATC
TGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGGA
GATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTCGA
TCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAATCTTCAGCCCGCTCCACTACTGCTTAGG
GAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTC
GATCTGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATTAGCCCG
Found at i:11019554 original size:176 final size:175
Alignment explanation
Indices: 11019134--11019510 Score: 556
Period size: 176 Copynumber: 2.1 Consensus size: 175
11019124 CTTCGATCTG
* * * * * * * * * *
11019134 CTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTAGCCCGCTCTATTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTG-CATTATAAGCACGCTCCACTACTACCTAGGAAGA
11019199 TAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGATC
65 TAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGATC
*
11019264 TGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATTAGCCCG
130 TGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATTAGCCCA
* * * * * *
11019310 CTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCATTACTGCTTAGGGAGA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGC-ATTATAAGCACGCTCCACTACTACCTAGGAAGA
11019375 TAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGATC
65 TAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGATC
* *
11019440 TGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCA
130 TGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATTAGCCCA
*
11019486 CTCCATTACTGCTTAGGGAGATAAG
1 CTCCACTACTGCTTAGGGAGATAAG
11019511 GCTAGTGGCT
Statistics
Matches: 192, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
176 192 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (175 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGCATTATAAGCACGCTCCACTACTACCTAGGAAGAT
AAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGATCT
GCTCCACTACTACTTAGAGAGATAGGATATGCAATCATTAGCCCA
Found at i:11019685 original size:572 final size:572
Alignment explanation
Indices: 11018737--11019906 Score: 1932
Period size: 572 Copynumber: 2.0 Consensus size: 572
11018727 TCTTCGATCT
* * * *
11018737 GCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTAGCCCGCTCTATTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCATTACTGCTTAGGGAG
11018802 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCAGAAAGATAAGATTCGCCGTCTTCGAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCAGAAAGATAAGATTCGCCGTCTTCGAT
* *
11018867 CTTCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCGCTCCATTACTGCTTAGGG
131 CTGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGG
11018932 AGATAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCACCGTCTTCG
196 AGATAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCACCGTCTTCG
* * * *
11018997 ATCTGCTCTACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAG
261 ATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAATCATTAGCCCACTCCACTACTGCTTAG
* ** * *
11019062 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTTGTCGTCTT
326 GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTT
* * * * * *
11019127 CGATCTGCTCCACTACTACTTAGGGAGATAAGATTTGTAATTATTAGCCCGCTCTATTACTGCTT
391 CGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAATCATTAGCCCGCTCCACTACTGCTT
* *
11019192 AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTC
456 AGGGAGATAAGGATAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCACCGTC
*
11019257 TTCGATCTGCTCCACTACTACTTAGAGAGATAGGATATGCAATCATT-AGCCC
521 TTCGATCTGCTCCACTACTACTTAGAGAGATAAGATATGCAATC-TTCAGCCC
11019309 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCATTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCATTACTGCTTAGGGAG
11019374 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTC-GAAAAGATAAGATTCGCCGTCTTCGA
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCAG-AAAGATAAGATTCGCCGTCTTCGA
11019438 TCTGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGG
130 TCTGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGG
* *
11019503 GAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTC
195 GAGATAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCACCGTCTTC
* * **
11019568 GATTTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAATC-TTCAGCCTGCTCCACTACTGCTT
260 GATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAATCATT-AGCCCACTCCACTACTGCTT
11019632 AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTC
324 AGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTC
*
11019697 TTCGATCTGCTCCACTACTACTTAGAGAGATAGGATCTGCAATCATTAGCCCGCTCCACTACTGC
389 TTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAATCATTAGCCCGCTCCACTACTGC
* * *
11019762 TTAGGGAGATAAGGATAGTGGCTTAAATTTGCTTCTCTACTACCTCGAGAAGATAAGATTCACCG
454 TTAGGGAGATAAGGATAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCACCG
* * * * * *
11019827 TCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCT
519 TCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATATGCAATCTTCAGCCC
11019881 GCTCCACTACTGCTTAGGGAGATAAG
1 GCTCCACTACTGCTTAGGGAGATAAG
11019907 GCTAGTGGCT
Statistics
Matches: 555, Mismatches: 40, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
571 5 0.01
572 550 0.99
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.29
Consensus pattern (572 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATTATTAGCCCGCTCCATTACTGCTTAGGGAG
ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCAGAAAGATAAGATTCGCCGTCTTCGAT
CTGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGGG
AGATAAAGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCACCGTCTTCG
ATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAATCATTAGCCCACTCCACTACTGCTTAG
GGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTT
CGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGCAATCATTAGCCCGCTCCACTACTGCTT
AGGGAGATAAGGATAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCACCGTC
TTCGATCTGCTCCACTACTACTTAGAGAGATAAGATATGCAATCTTCAGCCC
Found at i:11020257 original size:264 final size:264
Alignment explanation
Indices: 11019309--11020260 Score: 1573
Period size: 264 Copynumber: 3.6 Consensus size: 264
11019299 TCATTAGCCC
* * *
11019309 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAAT-TATTAGCCCGCTCCATTACTGCTTAGGGA
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCT-TCAGCCTGCTCCACTACTGCTTAGGGA
11019373 GATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGA
65 GATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGA
* *
11019438 TCTGCTCCACTACTACTTAGGGAGATAGGATCTGCAATCATTAGCCCACTCCATTACTGCTTAGG
130 TCTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCCGCTCCATTACTGCTTAGG
* *
11019503 GAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTC
195 GAGATAAGGATAGTGGCTTAAATCTGCTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTC
11019568 GATTT
260 GATTT
*
11019573 GCTCCACTACTGCTTAGAGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAG
11019638 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
* * *
11019703 CTGCTCCACTACTACTTAGAGAGATAGGATCTGCAATCATTAGCCCGCTCCACTACTGCTTAGGG
131 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCCGCTCCATTACTGCTTAGGG
* * *
11019768 AGATAAGGATAGTGGCTTAAATTTGCTTCTCTACTACCTCGAGAAGATAAGATTCACCGTCTTCG
196 AGATAAGGATAGTGGCTTAAATCTGCTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTCG
11019833 ATTT
261 ATTT
*
11019837 GCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAGCCTGCTCCACTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAG
* * * *
11019902 ATAAGGCTAGTGGCTTAAATCTACTTCCCTATTACCTCGAAAAGATAAGATTCACCGTCTTCAAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
*
11019967 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCCGCTCCATTACTGTTTAGGG
131 CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCCGCTCCATTACTGCTTAGGG
* *
11020032 AGATAAGGGTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTTG
196 AGATAAGGATAGTGGCTTAAATCTGCTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTCG
11020097 ATTT
261 ATTT
* * * * *
11020101 GCCCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAGTCTACTCAACTACTGCTTAGGGAG
1 GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAG
* * ** * *
11020166 ATAAGGCTAGTGGCTTAAATCTGCTTTCTTACTACCTCGGGAATATAAGATTCGCCATCTTCGAT
66 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
* *
11020231 CTACTCCACTACTGCTTAGGGAGATAAGAT
131 CTGCTCCACTACTACTTAGGGAGATAAGAT
11020261 TTGTAATTTT
Statistics
Matches: 642, Mismatches: 45, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
264 641 1.00
265 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (264 bp):
GCTCCACTACTGCTTAGGGAGATAAGATCTGCAATCTTCAGCCTGCTCCACTACTGCTTAGGGAG
ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGAAAAGATAAGATTCGCCGTCTTCGAT
CTGCTCCACTACTACTTAGGGAGATAAGATCTGCAATCATTAGCCCGCTCCATTACTGCTTAGGG
AGATAAGGATAGTGGCTTAAATCTGCTTCCCTACTACCTCGAGAAGATAAGATTCGCCGTCTTCG
ATTT
Found at i:11024738 original size:19 final size:20
Alignment explanation
Indices: 11024714--11024760 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
11024704 TTGTGACACT
*
11024714 CAATGCATATG-ATAAAATG
1 CAATGCAAATGCATAAAATG
*
11024733 CAATGCAAATGCATGAAATG
1 CAATGCAAATGCATAAAATG
11024753 -AATGCAAA
1 CAATGCAAA
11024761 AAGAGACGTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (20 bp):
CAATGCAAATGCATAAAATG
Found at i:11026654 original size:3 final size:3
Alignment explanation
Indices: 11026639--11026970 Score: 129
Period size: 3 Copynumber: 110.7 Consensus size: 3
11026629 AAATAGGACA
* * * **
11026639 AAT AAT AAA AAT AAT AGT AAT GAT AAT AAT AA- ATAT AAT GGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT
* * * * * ** *
11026684 AAT ATT AA- AAA AATT AAT -AT AAT GAT GAT AAT AGT GTT AAA AAT
1 AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
11026728 AAT AAT AAT AAT AA- ACA- AACG ACAT ATT AAT AAT AAT AGAA AAT AAC
1 AAT AAT AAT AAT AAT A-AT AA-T A-AT AAT AAT AAT AAT A-AT AAT AAT
* * *
11026775 GAT AAT AAT AAT AGA- AGT AAT GAA- AAT AAT AAT AAT AGA- AAC AAT
1 AAT AAT AAT AAT A-AT AAT AAT -AAT AAT AAT AAT AAT A-AT AAT AAT
* * * *
11026820 AAA AAT AAA AAT AAT AAT AA- AAT AGAA AAT AAT AAT GAT ACATT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT A-A-T AAT
* * * *
11026867 AAT AAT AAC AAT -AT AA- AA- AAT AAT ACT -AT ATT AAT AAA AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
11026911 AAT AGT AGGTT AAT AAT AAT AAT AAT AAT AAT AAGGT AA- AA- AAT AAT
1 AAT AAT A--AT AAT AAT AAT AAT AAT AAT AAT AA--T AAT AAT AAT AAT
*
11026958 AAT GA- AAT AAT AA
1 AAT AAT AAT AAT AA
11026971 AAACACTATT
Statistics
Matches: 245, Mismatches: 55, Indels: 58
0.68 0.15 0.16
Matches are distributed among these distances:
2 24 0.10
3 198 0.81
4 15 0.06
5 8 0.03
ACGTcount: A:0.63, C:0.02, G:0.07, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:11026889 original size:35 final size:35
Alignment explanation
Indices: 11026829--11026960 Score: 110
Period size: 35 Copynumber: 3.8 Consensus size: 35
11026819 TAAAAATAAA
11026829 AATAATAATAAAATAGAAAATAATAATGA-TACATT
1 AATAATAATAAAATAGAAAATAATAAT-ACTACATT
* *
11026864 AATAATAATAACAATATAAAA-AATAATACTATATT
1 AATAATAATAA-AATAGAAAATAATAATACTACATT
* *** *
11026899 AATAAAAATAATAATAGTAGGTTAATAATAATA-A-T
1 AATAATAATAA-AATAG-AAAATAATAATACTACATT
** *
11026934 AATAATAATAAGGTAAAAAATAATAAT
1 AATAATAATAAAATAGAAAATAATAAT
11026961 GAAATAATAA
Statistics
Matches: 77, Mismatches: 16, Indels: 10
0.75 0.16 0.10
Matches are distributed among these distances:
33 8 0.10
34 3 0.04
35 47 0.61
36 10 0.13
37 9 0.12
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (35 bp):
AATAATAATAAAATAGAAAATAATAATACTACATT
Found at i:11026909 original size:38 final size:38
Alignment explanation
Indices: 11026823--11026912 Score: 101
Period size: 38 Copynumber: 2.4 Consensus size: 38
11026813 AAACAATAAA
* *
11026823 AATAAAAATAATAATAAAATAGAAAATAATAATGATAC
1 AATAAAAATAATAACAAAATAAAAAATAATAATGATAC
* * * * *
11026861 ATTAATAATAATAACAATATAAAAAATAATACT-ATATT
1 AATAAAAATAATAACAAAATAAAAAATAATAATGATA-C
11026899 AATAAAAATAATAA
1 AATAAAAATAATAA
11026913 TAGTAGGTTA
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
37 3 0.07
38 39 0.93
ACGTcount: A:0.67, C:0.03, G:0.02, T:0.28
Consensus pattern (38 bp):
AATAAAAATAATAACAAAATAAAAAATAATAATGATAC
Found at i:11026911 original size:23 final size:23
Alignment explanation
Indices: 11026876--11026937 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
11026866 TAATAATAAC
*
11026876 AATATAAAA-AATAATACTATATT
1 AATA-AAAATAATAATACTAGATT
* *
11026899 AATAAAAATAATAATAGTAGGTT
1 AATAAAAATAATAATACTAGATT
*
11026922 AATAATAATAATAATA
1 AATAAAAATAATAATA
11026938 ATAATAAGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 4 0.12
23 30 0.88
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.32
Consensus pattern (23 bp):
AATAAAAATAATAATACTAGATT
Found at i:11027063 original size:21 final size:22
Alignment explanation
Indices: 11027016--11027071 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
11027006 AAAAGAACAC
* *
11027016 AATAATAGT-ATATAGAATAAT
1 AATAAAAGTAATATAGAATAAA
*
11027037 AGTAAAAGTAATA-AGAATAAA
1 AATAAAAGTAATATAGAATAAA
*
11027058 AATAAAAATAATAT
1 AATAAAAGTAATAT
11027072 TAAAAATAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 25 0.89
22 3 0.11
ACGTcount: A:0.64, C:0.00, G:0.09, T:0.27
Consensus pattern (22 bp):
AATAAAAGTAATATAGAATAAA
Found at i:11027067 original size:18 final size:18
Alignment explanation
Indices: 11027046--11027080 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
11027036 TAGTAAAAGT
11027046 AATAAGAATAAAAATAAA
1 AATAAGAATAAAAATAAA
* *
11027064 AATAATATTAAAAATAA
1 AATAAGAATAAAAATAA
11027081 TACTCTCCAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (18 bp):
AATAAGAATAAAAATAAA
Found at i:11027402 original size:25 final size:25
Alignment explanation
Indices: 11027361--11027413 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
11027351 TCGTGTATTC
*
11027361 CTTGTATTGAAAGTCTCT-TTTTTT
1 CTTGTATTGAAACTCTCTCTTTTTT
*
11027385 CTTGTATTTGAATCTCTCTCCTTTTTT
1 CTTGTA-TTGAAACTCTCT-CTTTTTT
11027412 CT
1 CT
11027414 CCAAAAAACA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
24 6 0.25
25 10 0.42
27 8 0.33
ACGTcount: A:0.13, C:0.19, G:0.09, T:0.58
Consensus pattern (25 bp):
CTTGTATTGAAACTCTCTCTTTTTT
Found at i:11029407 original size:228 final size:228
Alignment explanation
Indices: 11029010--11030592 Score: 1302
Period size: 228 Copynumber: 6.9 Consensus size: 228
11029000 GACACAACAG
* * * * * *
11029010 ATGCAGATCTTTGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCCGACAC
1 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACAC
* *
11029075 AATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCTTA
* * * * * *
11029140 TCTTCGCTGGGAAACAGCTTGAGGATGGCCGTACCCTTGCTGACTACAACATCCAAAAGGAGTCC
131 TCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGAGTCT
11029205 ACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
196 ACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
* * * * * *
11029238 ATGCAGATCTTCGTGAAAACCCTCACTGGCAAGACAATCACCCTTGAGGTTGAAAGCTCCGACAC
1 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACAC
* * * *
11029303 AATTGATAATGTCAAGGCTAAGATCCAGGATAAGGAAGGGATCCCTCCTGATCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCTTA
* * * * * * *
11029368 TCTTTGCCGGTAAGCAACTGGAAGATGGTCGCACCCTTGCTGACTACAACATTCAAAAAGAGTCT
131 TCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGAGTCT
* *
11029433 ACCCTCCACCTTGTGCTTCGTCTCAGGGGTGGC
196 ACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
* * * * * * * *
11029466 ATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCCGACAC
1 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACAC
* * * *
11029531 AATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAACAGAGGCTTA
66 AATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCTTA
* * ** * *
11029596 TCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAA-GAGTC
131 TCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCA-AAAGGAGTC
* *
11029660 TACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGC
195 TACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
* * * * * * * *
11029694 ATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCA-CTTTAGAGGTGGAGAGTTCTGATA
1 ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTT-GAGGTGGAGAGCTCCGACA
* * * * * *
11029758 CAATTGATAACGTTAAGTCCAAGATTCAGGACAAGG-AGGGCATCCCACCAGACCAGCAGAGG-T
65 CAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGG-ATCCCACCTGACCAACAGAGGCT
* * * * * * * * *
11029821 TAATTTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTATAACATTCAAAAGGAA
129 T-ATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGAG
* * *
11029886 TCTACCCTCCAT-TTGGT-GTTGCGTCTTC-GTGGTGGT
193 TCTACCCTCCATCTT-GTCCTT-CGTC-TCAGGGGTGGC
* * * * * * * * * *
11029922 ATGCA-AGTTTTTGTGAAGACCCTCACAGGAAAGACTATTA-CCTTGGAAGTTGAGAGTTCTGAT
1 ATGCAGA-TATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTT-GAGGTGGAGAGCTCCGAC
* * * * * * * * *
11029985 ACGATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCGGATCAACAGAGGCT
64 ACAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCT
* * * ** * * * *
11030050 GATTTTTGCTGGCAAGCAGCTGGAGGATGGGAGGACCCTTGCTGATTATAATATTCAGAAA-GAG
129 TATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCA-AAAGGAG
* * * * *
11030114 TCAACCCTCCA-CTTGGTGCTTCGCCTGC-GTGGTGGA
193 TCTACCCTCCATCTT-GTCCTTCGTCT-CAGGGGTGGC
** * * * *
11030150 ATGCAGATATTTGTGAAAACTTTGACCGGTAAA-ACCATTA-CGTTGGAGGTGGAGAGCTCCGAC
1 ATGCAGATATTTGTGAAAACCCTCACTGG-AAAGACCATCACCCTT-GAGGTGGAGAGCTCCGAC
** * * *
11030213 ACGGTTGATAATGTTAAGGCCAAGATCCAAGATAAGG-AGGGTATCCCACCTGACCAACAGAGG-
64 ACAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGG-ATCCCACCTGACCAACAGAGGC
* * * * * ** * * * *
11030276 TTGATTTTTGCCGGAAAGCAGCTCGAGGACGGGAGGACTCTTGCGGACTATAACATTCAAAAGGA
128 TT-ATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGA
* * * * * * * *
11030341 GTCGACCCTGCAT-TTGGT-TTTGCGCCTTAGAGGAGGG
192 GTCTACCCTCCATCTT-GTCCTT-CGTCTCAGGGGTGGC
* * * * * * * *
11030378 ATGCAGATATTTGTCAAGACCTTGACTGGGAAA-ACCATCACCCTGGAGGTTGAGAGCTCGGATA
1 ATGCAGATATTTGTGAAAACCCTCACT-GGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACA
* * * * * * * * *
11030442 CGATTGACAATGTAAAAGCAAAGATTCAGGACAAGG-AGGGAATTCCC-CCGGATCAGCAGAGG-
65 CAATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGG-A-TCCCACCTGACCAACAGAGGC
* * * * * * *
11030504 TTGATCTTTGCTGGGAAGCAGTTGGAGGACGGTCGAACCCTAGCTGACTACAATATCCAGAAGGA
128 TT-ATCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGA
* *
11030569 GTCTACTCTGCATCTTGTCCTTCG
192 GTCTACCCTCCATCTTGTCCTTCG
11030593 CCTCCGTGGT
Statistics
Matches: 1117, Mismatches: 210, Indels: 56
0.81 0.15 0.04
Matches are distributed among these distances:
227 26 0.02
228 1062 0.95
229 29 0.03
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (228 bp):
ATGCAGATATTTGTGAAAACCCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCCGACAC
AATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCACCTGACCAACAGAGGCTTA
TCTTTGCTGGGAAGCAGCTGGAGGATGGCCGAACCCTTGCTGACTACAACATTCAAAAGGAGTCT
ACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGC
Found at i:11030384 original size:684 final size:679
Alignment explanation
Indices: 11029009--11030592 Score: 1587
Period size: 684 Copynumber: 2.3 Consensus size: 679
11028999 CGACACAACA
* * * * * * *
11029009 GATGCAGATCTTTGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCCGACA
1 GATGCAGATCTTTGTAAAAAC-CTCACTGGAAAAACCATCACCCTAGAGGTGGAGAGCTCCGATA
* * * * *
11029074 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAACAGAGGCTT
65 CAATTGATAATGT-AAAGCCAAGATTCAGGACAAGG-AGGGAT-CCCCCAGACCAGCAGAGG-TT
* * * * * * *
11029139 ATCTTCGCTGGGAAACAGCTTGAGGATGGCCGTACCCTTGCTGACTACAACATCCAAAAGGAGTC
126 ATCTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTACAACATCCAAAAGGAATC
* *
11029204 CACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTGAAAACCCTCACTGGCA
191 CACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTGAAAACCCTCACAGGAA
* * * *
11029269 AGACAATCACCCTTGAGGTTGAAAGCTCCGACACAATTGATAATGTCAAGGCTAAGATCCAGGAT
256 AGACAATCACCCTTGAAGTTGAAAGCTCCGACACAATTGACAATGTCAAAGCTAAGATCCAGGAC
* * * * **
11029334 AAGGAAGGGATCCCTCCTGATCAACAGAGGCTTATCTTTGCCGGTAAGCAACTGGAAGATGGTCG
321 AAGGAAGGGATCCCACCGGATCAACAGAGGCTGATCTTTGCCGGCAAGCAACTGGAAGATGGGAG
* *
11029399 CACCCTTGCTGACTACAACATTCAAAAAGAGTCTACCCTCCACCTTGTGCTTCGTCTCAGGGGTG
386 CACCCTTGCTGACTACAACATTCAAAAAGAGTCAACCCTCCACCTTGTGCTTCGCCTCAGGGGTG
* * *
11029464 GCATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCCGAC
451 GAATGCAAATATTTGTCAAAACTCTTACCGGCAAAACAATCACCCTTGAAGTGGAAAGCTCCGAC
*
11029529 ACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCTCCTGACCAACAGAGGCT
516 ACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCTGACCAACAGAGGCT
* * * * * *
11029594 TATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAAGAGT
581 TATCTTTGCCGGAAAACAACTCGAGGACGGCAGCACCCTTGCGGACTACAACATCCAGAAAGAGT
* * * *
11029659 CTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGG
646 CGACCCTCCACCTTGTCCTTCGCCTTAGAGGAGG
* ** * *
11029693 CATGCAGATCTTTGTAAAAACGCTCACTGGAAAAACCATCACTTTAGAGGTGGAGAGTTCTGATA
1 GATGCAGATCTTTGTAAAAAC-CTCACTGGAAAAACCATCACCCTAGAGGTGGAGAGCTCCGATA
* *
11029758 CAATTGATAACGTTAAGTCCAAGATTCAGGACAAGGAGGGCATCCCACCAGACCAGCAGAGGTTA
65 CAATTGATAATGTAAAG-CCAAGATTCAGGACAAGGAGGG-ATCCC-CCAGACCAGCAGAGGTT-
* * *
11029823 ATTTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTATAACATTCAAAAGGAATC
126 ATCTTTGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTACAACATCCAAAAGGAATC
* * * * * * *
11029888 TACCCTCCAT-TTGGT-GTTGCGTCTTC-GTGGTGGTATGCA-AGTTTTTGTGAAGACCCTCACA
191 CACCCTCCATCTT-GTCCTT-CGTC-TCAGGGGTGGCATGCAGA-TCTTCGTGAAAACCCTCACA
* * * * * * * *
11029949 GGAAAGACTATTA-CCTTGGAAGTTGAGAGTTCTGATACGATTGACAATGTGAAAGCTAAGATCC
252 GGAAAGACAATCACCCTT-GAAGTTGAAAGCTCCGACACAATTGACAATGTCAAAGCTAAGATCC
* * * * * *
11030013 AGGACAAGGAAGGTATTCCACCGGATCAACAGAGGCTGATTTTTGCTGGCAAGCAGCTGGAGGAT
316 AGGACAAGGAAGGGATCCCACCGGATCAACAGAGGCTGATCTTTGCCGGCAAGCAACTGGAAGAT
* * * * *
11030078 GGGAGGACCCTTGCTGATTATAATATTCAGAAAGAGTCAACCCTCCA-CTTGGTGCTTCGCCTGC
381 GGGAGCACCCTTGCTGACTACAACATTCAAAAAGAGTCAACCCTCCACCTT-GTGCTTCGCCT-C
* * * * * * * * *
11030142 -GTGGTGGAATGCAGATATTTGTGAAAACT-TTGACCGGTAAAACCATTA-CGTTGGAGGTGGAG
444 AGGGGTGGAATGCAAATATTTGTCAAAACTCTT-ACCGGCAAAACAATCACCCTT-GAAGTGGAA
** * * * *
11030204 AGCTCCGACACGGTTGATAATGTTAAGGCCAAGATCCAAGATAAGGAGGGTATCCCACCTGACCA
507 AGCTCCGACACAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCTGACCA
* * * * * * * *
11030269 ACAGAGG-TTGATTTTTGCCGGAAAGCAGCTCGAGGACGGGAGGACTCTTGCGGACTATAACATT
572 ACAGAGGCTT-ATCTTTGCCGGAAAACAACTCGAGGACGGCAGCACCCTTGCGGACTACAACATC
* * *
11030333 CA-AAAGGAGTCGACCCTGCA-TTTGGT-TTTGCGCCTTAGAGGAGG
636 CAGAAA-GAGTCGACCCTCCACCTT-GTCCTT-CGCCTTAGAGGAGG
* * * * * * * *
11030377 GATGCAGATATTTGTCAAGACCTTGACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCGGATA
1 GATGCAGATCTTTGTAAAAACC-TCACTGGAAAAACCATCACCCTAGAGGTGGAGAGCTCCGATA
* * * * *
11030442 CGATTGACAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCGGATCAGCAGAGGTTG
65 CAATTGATAATGT-AAAGCCAAGATTCAGGACAAGGAGGG-A-TCCCCCAGACCAGCAGAGGTT-
* * * * * * * * *
11030507 ATCTTTGCTGGGAAGC-AGTTGGAGGACGGTC-GAACCCTAGCTGACTACAATATCCAGAAGGAG
126 ATCTTTGCTGGGAAACAACTT-GAAGATGG-CAGAACCCTTGCAGACTACAACATCCAAAAGGAA
* * *
11030570 TCTACTCTGCATCTTGTCCTTCG
189 TCCACCCTCCATCTTGTCCTTCG
11030593 CCTCCGTGGT
Statistics
Matches: 730, Mismatches: 146, Indels: 48
0.79 0.16 0.05
Matches are distributed among these distances:
683 41 0.06
684 674 0.92
685 15 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (679 bp):
GATGCAGATCTTTGTAAAAACCTCACTGGAAAAACCATCACCCTAGAGGTGGAGAGCTCCGATAC
AATTGATAATGTAAAGCCAAGATTCAGGACAAGGAGGGATCCCCCAGACCAGCAGAGGTTATCTT
TGCTGGGAAACAACTTGAAGATGGCAGAACCCTTGCAGACTACAACATCCAAAAGGAATCCACCC
TCCATCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTGAAAACCCTCACAGGAAAGACA
ATCACCCTTGAAGTTGAAAGCTCCGACACAATTGACAATGTCAAAGCTAAGATCCAGGACAAGGA
AGGGATCCCACCGGATCAACAGAGGCTGATCTTTGCCGGCAAGCAACTGGAAGATGGGAGCACCC
TTGCTGACTACAACATTCAAAAAGAGTCAACCCTCCACCTTGTGCTTCGCCTCAGGGGTGGAATG
CAAATATTTGTCAAAACTCTTACCGGCAAAACAATCACCCTTGAAGTGGAAAGCTCCGACACAAT
TGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTATCCCACCTGACCAACAGAGGCTTATCT
TTGCCGGAAAACAACTCGAGGACGGCAGCACCCTTGCGGACTACAACATCCAGAAAGAGTCGACC
CTCCACCTTGTCCTTCGCCTTAGAGGAGG
Found at i:11030604 original size:456 final size:453
Alignment explanation
Indices: 11029009--11030596 Score: 1519
Period size: 456 Copynumber: 3.5 Consensus size: 453
11028999 CGACACAACA
* * * * * *
11029009 GATGCAGATCTTTGTGAAAACTCTTACTGGTAAGACCATCACCCTCGAGGTGGAAAGCTCCGACA
1 GATGCAGATATTTGTCAAAACTCTTACTGGGAAAACCATCACCCTGGAAGTGGAAAGCTCCGACA
* * * * *
11029074 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCCCCTGACCAACAGAGGCTT
66 CAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCGGACCAACAGAGGCTT
* *
11029139 ATCTTCGCTGGGAAACAGCTT-GAGGATGGCCGTACCCTTGCTGACTACAACATCCA-AAAGGAG
131 ATCTTTGCTGGGAAACAG-TTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAA-GAG
* * *
11029202 TCCACCCTCCATCTTGTCCTTCGTCTCAGGGGTGGCATGCAGATCTTCGTGAAAACCCTCACTGG
194 TCTACCCTCCATCTTGTCCTTCGCCTCAGGGGTGGCATGCAGATCTTTGTGAAAACCCTCACTGG
* * * * * * *
11029267 CAAGACAATCACCCTTGAGGTTGAAAGCTCCGACACAATTGATAATGTCAAGGCTAAGATCCAGG
259 AAAAACCATCA-CCTTGAGGTGGAGAGCTCCGACACAATTGATAATGTTAAGGCCAAGATCCAGG
* * * * *
11029332 ATAAGGAAGGGATCCCTCCTGATCAACAGAGGCTTATCTTTGCCGGTAAGCAACTGGAAGATGGT
323 ATAAGG-AGGGATCCCACCTGACCAACAGAGG-TTATTTTTGCCGGAAAGCAACTCGAAGATGG-
* * * * * *
11029397 C-GCACCCTTGCTGACTACAACATTCAAAAAGAGTCTACCCTCCACCTT-GTGCTT-CGTCTCAG
385 CAGAACCCTTGCAGACTATAACATTCAAAAGGAGTCTACCCTCCA-TTTGGT-CTTGCGTCTTAG
*
11029459 GGGTGG
448 AGGTGG
* * * * * *
11029465 CATGCAAATATTTGTCAAAACTCTTACTGGCAAGACAATCACCCTTGAAGTGGAAAGCTCCGACA
1 GATGCAGATATTTGTCAAAACTCTTACTGGGAAAACCATCACCCTGGAAGTGGAAAGCTCCGACA
* * * *
11029530 CAATTGATAATGTCAAGGCCAAGATCCAAGACAAAGAAGGTA-TCCCTCCTGACCAACAGAGGCT
66 CAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCC-CCGGACCAACAGAGGCT
* * *
11029594 TATCTTTGCTGGAAAACAATTGGAGGATGGCCGCACCCTTGCTGACTACAACATCCAGAAAGAGT
130 TATCTTTGCTGGGAAACAGTTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAGT
* * * * *
11029659 CTACCCTCCACCTTGTCCTTCGTCTTAGGGGTGGCATGCAGATCTTTGTAAAAACGCTCACTGGA
195 CTACCCTCCATCTTGTCCTTCGCCTCAGGGGTGGCATGCAGATCTTTGTGAAAACCCTCACTGGA
* * * * * * *
11029724 AAAACCATCACTTTAGAGGTGGAGAGTTCTGATACAATTGATAACGTTAAGTCCAAGATTCAGGA
260 AAAACCATCACCTT-GAGGTGGAGAGCTCCGACACAATTGATAATGTTAAGGCCAAGATCCAGGA
* * * * *
11029789 CAAGGAGGGCATCCCACCAGACCAGCAGAGGTTAATTTTTGCTGGGAAA-CAACTTGAAGATGGC
324 TAAGGAGGG-ATCCCACCTGACCAACAGAGGTT-ATTTTTGC-CGGAAAGCAACTCGAAGATGGC
* * * *
11029853 AGAACCCTTGCAGACTATAACATTCAAAAGGAATCTACCCTCCATTTGGTGTTGCGTCTTCGTGG
386 AGAACCCTTGCAGACTATAACATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGCGTCTTAGAGG
11029918 TGG
451 TGG
* * * * * * * * * * * * * *
11029921 TATGCA-AGTTTTTGTGAAGACCCTCAC-AGGAAAGACTATTACCTTGGAAGTTGAGAGTTCTGA
1 GATGCAGA-TATTTGTCAAAACTCTTACTGGGAAA-ACCATCACCCTGGAAGTGGAAAGCTCCGA
* * * * * * *
11029984 TACGATTGACAATGTGAAAGCTAAGATCCAGGACAAGGAAGGTATTCCACCGGATCAACAGAGGC
64 CACAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCGGACCAACAGAGGC
* * * * * ** * * * * *
11030049 TGATTTTTGCTGGCAAGCAGCTGGAGGATGGGAGGACCCTTGCTGATTATAATATTCAGAAAGAG
129 TTATCTTTGCTGGGAAACAGTTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAG
* * * * * ** * *
11030114 TCAACCCTCCA-CTTGGTGCTTCGCCTGC-GTGGTGGAATGCAGATATTTGTGAAAACTTTGACC
194 TCTACCCTCCATCTT-GTCCTTCGCCT-CAGGGGTGGCATGCAGATCTTTGTGAAAACCCTCACT
* * * **
11030177 GGTAAAACCATTACGTTGGAGGTGGAGAGCTCCGACACGGTTGATAATGTTAAGGCCAAGATCCA
257 GGAAAAACCATCACCTT-GAGGTGGAGAGCTCCGACACAATTGATAATGTTAAGGCCAAGATCCA
* * * *
11030242 AGATAAGGAGGGTATCCCACCTGACCAACAGAGGTTGATTTTTGCCGGAAAGCAGCTCGAGGACG
321 GGATAAGGAGGG-ATCCCACCTGACCAACAGAGGTT-ATTTTTGCCGGAAAGCAACTCGAAGATG
* * * * * * * *
11030307 GGAGGACTCTTGCGGACTATAACATTCAAAAGGAGTCGACCCTGCATTTGGTTTTGCGCCTTAGA
384 GCAGAACCCTTGCAGACTATAACATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGCGTCTTAGA
*
11030372 GGAGG
449 GGTGG
* * * * * *
11030377 GATGCAGATATTTGTCAAGAC-CTTGACTGGGAAAACCATCACCCTGGAGGTTGAGAGCTCGGAT
1 GATGCAGATATTTGTCAAAACTCTT-ACTGGGAAAACCATCACCCTGGAAGTGGAAAGCTCCGAC
* * * * * * * * *
11030441 ACGATTGACAATGTAAAAGCAAAGATTCAGGACAAGGAGGGAATTCCCCCGGATCAGCAGAGG-T
65 ACAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCGGACCAACAGAGGCT
* * * * * *
11030505 TGATCTTTGCTGGGAAGCAGTTGGAGGACGGTCGAACCCTAGCTGACTACAATATCCAGAAGGAG
130 T-ATCTTTGCTGGGAAACAGTTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAG
* *
11030570 TCTACTCTGCATCTTGTCCTTCGCCTC
194 TCTACCCTCCATCTTGTCCTTCGCCTC
11030597 CGTGGTGGTT
Statistics
Matches: 934, Mismatches: 177, Indels: 43
0.81 0.15 0.04
Matches are distributed among these distances:
455 35 0.04
456 880 0.94
457 19 0.02
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (453 bp):
GATGCAGATATTTGTCAAAACTCTTACTGGGAAAACCATCACCCTGGAAGTGGAAAGCTCCGACA
CAATTGACAATGTCAAAGCCAAGATCCAAGACAAGGAAGGTATTCCCCCGGACCAACAGAGGCTT
ATCTTTGCTGGGAAACAGTTGGAGGATGGCCGAACCCTTGCTGACTACAACATCCAGAAAGAGTC
TACCCTCCATCTTGTCCTTCGCCTCAGGGGTGGCATGCAGATCTTTGTGAAAACCCTCACTGGAA
AAACCATCACCTTGAGGTGGAGAGCTCCGACACAATTGATAATGTTAAGGCCAAGATCCAGGATA
AGGAGGGATCCCACCTGACCAACAGAGGTTATTTTTGCCGGAAAGCAACTCGAAGATGGCAGAAC
CCTTGCAGACTATAACATTCAAAAGGAGTCTACCCTCCATTTGGTCTTGCGTCTTAGAGGTGG
Found at i:11030855 original size:87 final size:87
Alignment explanation
Indices: 11030704--11030886 Score: 330
Period size: 87 Copynumber: 2.1 Consensus size: 87
11030694 TTTTTTAAGG
11030704 TAATGATACTTTGGTGTGAAGTGGTTAGAGAGCCACAACTCACTTACTATATTAAATAAGGTTCG
1 TAAT-ATACTTTGGTGTGAAGTGGTTAGAGAGCCACAACTCACTTACTATATTAAATAAGGTTCG
11030769 GACTATTTCATAATCTCCTATCC
65 GACTATTTCATAATCTCCTATCC
* *
11030792 TAATATACTTTGGTGTGAAGTGGTTAGAGAGCTACAACTCAGTTACTATATTAAATAAGGTTCGG
1 TAATATACTTTGGTGTGAAGTGGTTAGAGAGCCACAACTCACTTACTATATTAAATAAGGTTCGG
*
11030857 ACTATTTCATAATCTCGTATCC
66 ACTATTTCATAATCTCCTATCC
11030879 TAATATAC
1 TAATATAC
11030887 ATTCATCTTG
Statistics
Matches: 92, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
87 88 0.96
88 4 0.04
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (87 bp):
TAATATACTTTGGTGTGAAGTGGTTAGAGAGCCACAACTCACTTACTATATTAAATAAGGTTCGG
ACTATTTCATAATCTCCTATCC
Found at i:11032042 original size:16 final size:16
Alignment explanation
Indices: 11032009--11032042 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
11031999 CACTTGTGTT
* *
11032009 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
11032025 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
11032041 AA
1 AA
11032043 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:11034868 original size:21 final size:21
Alignment explanation
Indices: 11034842--11034882 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
11034832 AGACGAGCAA
* *
11034842 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
11034863 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
11034883 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:11036821 original size:16 final size:16
Alignment explanation
Indices: 11036788--11036821 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
11036778 GGAGATTGTT
* *
11036788 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
11036804 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
11036820 AA
1 AA
11036822 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Done.