Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 50 of 186
Found at i:15281181 original size:26 final size:26
Alignment explanation
Indices: 15281151--15281203 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15281141 TTTATACTTT
*
15281151 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCATAGG-GATAAATTGACCGAAA
* *
15281177 TACCCATAGGGTTAAATTGACCTAAA
1 TACCCATAGGGATAAATTGACCGAAA
15281203 T
1 T
15281204 GCATGTTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.40, C:0.21, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCATAGGGATAAATTGACCGAAA
Found at i:15291297 original size:27 final size:27
Alignment explanation
Indices: 15291256--15291368 Score: 120
Period size: 27 Copynumber: 4.2 Consensus size: 27
15291246 GAGGAAGCGT
*
15291256 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15291283 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
** *
15291310 TCTGGTGGCTCTGCCATGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
15291338 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
15291364 TCTGG
1 TCTGG
15291369 CAGCCATGCT
Statistics
Matches: 73, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
26 5 0.07
27 54 0.74
28 14 0.19
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:15291361 original size:54 final size:54
Alignment explanation
Indices: 15291254--15291368 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
15291244 TGGAGGAAGC
*
15291254 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* ** * *
15291308 GTTCTGGTGGCTCTGCCATGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
15291362 GTTCTGG
1 GTTCTGG
15291369 CAGCCATGCT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 36 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:15297618 original size:26 final size:26
Alignment explanation
Indices: 15297589--15297698 Score: 175
Period size: 26 Copynumber: 4.2 Consensus size: 26
15297579 TGGTACAAAT
*
15297589 TGATAATAGGTTAGGTATATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15297615 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15297641 TGATAATCGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
15297667 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
15297693 TGATAA
1 TGATAA
15297699 GAATTTCATG
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 80 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:15298298 original size:273 final size:274
Alignment explanation
Indices: 15297810--15298356 Score: 999
Period size: 273 Copynumber: 2.0 Consensus size: 274
15297800 ATCATAGCTG
*
15297810 AAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTGAGTATTCGGTCATTAGGAGAAGGAAAAT
1 AAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTGAATATTCGGTCATTAGGAGAAGGAAAAT
*
15297875 TGAAGGTAAGTTCTTGGTACCTTGCTTCTATTTTGAGGTTCATGAGTTCTTCTTGATTCTACCTT
66 TGAAGGTAAGTTCATGGTACCTTGCTTCTATTTTGAGGTTCATGAGTTCTTCTTGATTCTACCTT
15297940 AACTCTTGAAGTATATTTTGATTTTTAGTTGTGTTGTGAGCATTTAGTCATGAATTAAAATGAAG
131 AACTCTTGAAGTATATTTTGATTTTTAGTTGTGTTGTGAGCATTTAGTCATGAATTAAAATGAAG
15298005 GAAATGGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGGTGAAGTTGAGCCAAACAA
196 GAAATGGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGGTGAAGTTGAGCCAAACAA
15298070 ACGAGCATGCATGT
261 ACGAGCATGCATGT
* *
15298084 AAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTGAATGTTCGGTCACTT-GGGGAA-GAAAA
1 AAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTGAATATTCGGTCA-TTAGGAGAAGGAAAA
** *
15298147 TTGAAGGTAAGTTCATGGTAGTTTGCTTTTATTTTGAGGTTCATGAGTTCTTCTTGATTCTACCT
65 TTGAAGGTAAGTTCATGGTACCTTGCTTCTATTTTGAGGTTCATGAGTTCTTCTTGATTCTACCT
15298212 TAACTCTTGAAGTATATTTTGATTTTTAGTTGTGTTGTGAGCATTTAGTCATGAATTAAAATGAA
130 TAACTCTTGAAGTATATTTTGATTTTTAGTTGTGTTGTGAGCATTTAGTCATGAATTAAAATGAA
15298277 GGAAATGGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGGTGAAGTTGAGCCAAACA
195 GGAAATGGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGGTGAAGTTGAGCCAAACA
*
15298342 AATGAGCATGCATGT
260 AACGAGCATGCATGT
15298357 GCCTTAGATG
Statistics
Matches: 264, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
273 210 0.80
274 52 0.20
275 2 0.01
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.35
Consensus pattern (274 bp):
AAAGTTAGAGAAGAGAAAGGAGAGGAGAAAGCTCTTGAATATTCGGTCATTAGGAGAAGGAAAAT
TGAAGGTAAGTTCATGGTACCTTGCTTCTATTTTGAGGTTCATGAGTTCTTCTTGATTCTACCTT
AACTCTTGAAGTATATTTTGATTTTTAGTTGTGTTGTGAGCATTTAGTCATGAATTAAAATGAAG
GAAATGGTTGTTGTTTCATGTTCTTTTGATGAAAAATGGAAGATAGGTGAAGTTGAGCCAAACAA
ACGAGCATGCATGT
Found at i:15299632 original size:27 final size:27
Alignment explanation
Indices: 15299591--15299703 Score: 129
Period size: 27 Copynumber: 4.2 Consensus size: 27
15299581 GAGCAAGCGT
*
15299591 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15299618 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
15299645 TCTGGTGGCTCTGCCACGATTATCTGTA
1 TCTGGTGGCTCTGCCACAAATATCTG-A
* * * *
15299673 TCTGGTGACTCTGTCAC-ATTATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
15299699 TCTGG
1 TCTGG
15299704 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 55 0.73
28 15 0.20
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:15299696 original size:54 final size:54
Alignment explanation
Indices: 15299589--15299703 Score: 169
Period size: 54 Copynumber: 2.1 Consensus size: 54
15299579 TGGAGCAAGC
*
15299589 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
* * * *
15299643 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCT
1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTGCCACATATATCT
15299697 GTTCTGG
1 GTTCTGG
15299704 CAGCCATGCT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 37 0.67
55 18 0.33
ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37
Consensus pattern (54 bp):
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTGCCACATATATCT
Found at i:15306225 original size:41 final size:41
Alignment explanation
Indices: 15306139--15306285 Score: 206
Period size: 41 Copynumber: 3.6 Consensus size: 41
15306129 CGACAAATCA
* * *
15306139 GCTATATGTGGCACTTAGTGTGCGA-TTCGACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCG
* * *
15306179 GCTATATATGTCATTTAGTGTGCGAGATCAAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCG
* * *
15306220 ACTATATATGGCACTTAGTGTGCGAGGTCGAGATAACTTCG
1 GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCG
15306261 GCTATATATGGCACTTAGTGTGCGA
1 GCTATATATGGCACTTAGTGTGCGA
15306286 TTTGAGAAAG
Statistics
Matches: 93, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 22 0.24
41 71 0.76
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (41 bp):
GCTATATATGGCACTTAGTGTGCGAGATCGAGATAGCTTCG
Found at i:15306320 original size:81 final size:82
Alignment explanation
Indices: 15306150--15306326 Score: 189
Period size: 81 Copynumber: 2.2 Consensus size: 82
15306140 CTATATGTGG
* * * * *
15306150 CACTTAGTGTGCGA-TTCGACATAGCTTCGGCTATATATGTCATTTAGTGTGCGAGATCAAGATA
1 CACTTAGTGTGCGAGGTCGACATAACTTCGGCTATATATGGCACTTAGTGTGCGAGATCAAGAAA
* ***
15306214 GCTTCGACTATATATGG
66 GCATCGACTATATACAA
* * **
15306231 CACTTAGTGTGCGAGGTCGAGATAACTTCGGCTATATATGGCACTTAGTGTGCGA-TTTGAGAAA
1 CACTTAGTGTGCGAGGTCGACATAACTTCGGCTATATATGGCACTTAGTGTGCGAGATCAAGAAA
*
15306295 GCATC-AGCTATGTACAA
66 GCATCGA-CTATATACAA
*
15306312 CACTTAGTGTACGAG
1 CACTTAGTGTGCGAG
15306327 ATATTAAGTA
Statistics
Matches: 79, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
80 1 0.01
81 43 0.54
82 35 0.44
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (82 bp):
CACTTAGTGTGCGAGGTCGACATAACTTCGGCTATATATGGCACTTAGTGTGCGAGATCAAGAAA
GCATCGACTATATACAA
Found at i:15313590 original size:40 final size:40
Alignment explanation
Indices: 15313534--15313609 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
15313524 TGTGAGATCA
* * *
15313534 AGATAGCTTTGGCTATATATAGAACTTAGTGTGCGATTTG
1 AGATAGCTTCGACTATATACAGAACTTAGTGTGCGATTTG
* *
15313574 AGATAGCTTCGACTATATACGGCACTTAGTGTGCGA
1 AGATAGCTTCGACTATATACAGAACTTAGTGTGCGA
15313610 GATATCAAGT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (40 bp):
AGATAGCTTCGACTATATACAGAACTTAGTGTGCGATTTG
Found at i:15320031 original size:23 final size:23
Alignment explanation
Indices: 15319984--15320033 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
15319974 GAAATAACAA
**
15319984 AAATATTTATACTAATAAATGCT
1 AAATATTTATACTAATAAAAACT
15320007 AAATATTTATACTAATAAAAACT
1 AAATATTTATACTAATAAAAACT
15320030 AAAT
1 AAAT
15320034 CTTCCAGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.02, T:0.36
Consensus pattern (23 bp):
AAATATTTATACTAATAAAAACT
Found at i:15321050 original size:9 final size:9
Alignment explanation
Indices: 15321026--15321075 Score: 52
Period size: 9 Copynumber: 5.7 Consensus size: 9
15321016 TATGGTTTTA
15321026 TATTAAATATT
1 TATT-AATA-T
15321037 TATTAATAT
1 TATTAATAT
15321046 TATTAATA-
1 TATTAATAT
15321054 -A-TAATAT
1 TATTAATAT
*
15321061 TATTATTAT
1 TATTAATAT
15321070 TATTAA
1 TATTAA
15321076 ATTGATATTA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
6 5 0.15
7 1 0.03
8 1 0.03
9 19 0.56
10 4 0.12
11 4 0.12
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (9 bp):
TATTAATAT
Found at i:15321632 original size:20 final size:21
Alignment explanation
Indices: 15321598--15321651 Score: 67
Period size: 20 Copynumber: 2.6 Consensus size: 21
15321588 TGATGATATT
*
15321598 TTATGATTA-TTTAATTAGATA
1 TTAT-ATTATTTTAATGAGATA
15321619 -TATATTATTTTAATGAGATA
1 TTATATTATTTTAATGAGATA
*
15321639 TTTTATTATTTTA
1 TTATATTATTTTA
15321652 TTATTAATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
19 4 0.14
20 14 0.48
21 11 0.38
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (21 bp):
TTATATTATTTTAATGAGATA
Found at i:15323844 original size:23 final size:23
Alignment explanation
Indices: 15323810--15323921 Score: 93
Period size: 23 Copynumber: 4.8 Consensus size: 23
15323800 CCCGATATAT
*
15323810 GGCTCTTCGTGAGCTTCCCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
15323833 GGCTCTTTGTGAGCTTCCCGATA
1 GGCTCTTTGTGAGCTTCCCGATA
** *
15323856 GTGCTCGCT-TGAACTTCCCGATATA
1 G-GCTCTTTGTGAGCTTCCCG--ATA
* *** *
15323881 TGGCT-ATCCAGAGCTTCTCGATA
1 -GGCTCTTTGTGAGCTTCCCGATA
15323904 GGCTCTTTGTGAGCTTCC
1 GGCTCTTTGTGAGCTTCC
15323922 TAATATAGTT
Statistics
Matches: 68, Mismatches: 15, Indels: 12
0.72 0.16 0.13
Matches are distributed among these distances:
22 4 0.06
23 44 0.65
24 5 0.07
25 14 0.21
26 1 0.01
ACGTcount: A:0.15, C:0.28, G:0.24, T:0.33
Consensus pattern (23 bp):
GGCTCTTTGTGAGCTTCCCGATA
Found at i:15325589 original size:38 final size:39
Alignment explanation
Indices: 15325547--15325640 Score: 120
Period size: 40 Copynumber: 2.4 Consensus size: 39
15325537 CCAACTCCGT
* *
15325547 CCAA-CCTAACACACCA-TTTGGGGATAAAATCGACCCAC
1 CCAACCCT-ACACACCAGTATGGGGATAAAATCAACCCAC
* *
15325585 CCAACCCTACACACCAAGTATGGGGATAGAATCAACCCAT
1 CCAACCCTACACACC-AGTATGGGGATAAAATCAACCCAC
15325625 CCAACCCTACACACCA
1 CCAACCCTACACACCA
15325641 AGTGGTACCG
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 11 0.22
39 5 0.10
40 33 0.67
ACGTcount: A:0.37, C:0.37, G:0.12, T:0.14
Consensus pattern (39 bp):
CCAACCCTACACACCAGTATGGGGATAAAATCAACCCAC
Found at i:15325623 original size:40 final size:40
Alignment explanation
Indices: 15325565--15325643 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
15325555 ACACACCATT
*
15325565 TGGGGATAAAATCGACCCACCCAACCCTACACACCAAGTA
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
* *
15325605 TGGGGATAGAATCAACCCATCCAACCCTACACACCAAGT
1 TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGT
15325644 GGTACCGTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.37, C:0.34, G:0.15, T:0.14
Consensus pattern (40 bp):
TGGGGATAAAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:15328422 original size:27 final size:27
Alignment explanation
Indices: 15328384--15328451 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
15328374 TTTAATGCCT
*
15328384 TTCTGTTGTGTTTGGAAGGATTATTTA
1 TTCTGGTGTGTTTGGAAGGATTATTTA
* * * *
15328411 TTCTTGTGTGTTTGGGAGGATTCTTTG
1 TTCTGGTGTGTTTGGAAGGATTATTTA
15328438 TTCTGGTGTGTTTG
1 TTCTGGTGTGTTTG
15328452 ATTGGAATCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.10, C:0.06, G:0.31, T:0.53
Consensus pattern (27 bp):
TTCTGGTGTGTTTGGAAGGATTATTTA
Found at i:15333284 original size:3 final size:3
Alignment explanation
Indices: 15333276--15333625 Score: 93
Period size: 3 Copynumber: 115.0 Consensus size: 3
15333266 CCCTATATAT
* * *
15333276 TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTT TTA -TA CTG TTA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
15333320 TGTT TTA TTT TTAA CT- TTA -TA TT- TATA TTA TATA TTA -TA TGA TTA
1 T-TA TTA TTA TT-A TTA TTA TTA TTA T-TA TTA T-TA TTA TTA TTA TTA
*
15333365 TT- TTA TTA TATA TTA TT- TATA TTA TTA TTA TTTA TTA TATA TTA TTT
1 TTA TTA TTA T-TA TTA TTA T-TA TTA TTA TTA -TTA TTA T-TA TTA TTA
** *
15333412 TTCA CAAA TTA TTA TTA TT- TTA -CA TTA TTA TTTA TATA TTA TTA TTA
1 TT-A -TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA T-TA TTA TTA TTA
* *
15333459 -TA TTT TTA CTT- GTA TTA -TA TGT- TTA TTAA TTA TT- TATA TATA
1 TTA TTA TTA -TTA TTA TTA TTA T-TA TTA TT-A TTA TTA T-TA T-TA
*
15333501 TTA TATA TTA TT- TT- TTA CATA TATA CTT- TTA -TA TTA TATA TTA
1 TTA T-TA TTA TTA TTA TTA -TTA T-TA -TTA TTA TTA TTA T-TA TTA
*
15333544 TATA TTA -TA TATA TT- TTA TTA TATA TTA TTA TGTCA TT- TTT TTA
1 T-TA TTA TTA T-TA TTA TTA TTA T-TA TTA TTA T-T-A TTA TTA TTA
* * *
15333588 -TA TTA TTA TACA TTT TTA TCTA TATA TTA TTA TCA TTA
1 TTA TTA TTA T-TA TTA TTA T-TA T-TA TTA TTA TTA TTA
15333626 AAGGTTTTTA
Statistics
Matches: 262, Mismatches: 33, Indels: 104
0.66 0.08 0.26
Matches are distributed among these distances:
2 42 0.16
3 153 0.58
4 64 0.24
5 3 0.01
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:15333319 original size:39 final size:38
Alignment explanation
Indices: 15333269--15333625 Score: 120
Period size: 39 Copynumber: 9.6 Consensus size: 38
15333259 AATCTAACCC
15333269 TATATATTTATTATTATTATTATTATTATTATATTTTTT
1 TATATA-TTATTATTATTATTATTATTATTATATTTTTT
* * * * *
15333308 TATACTGTTATT-TGTTTTATTTTTAACT-TTATATTTATAT
1 TATA-TATTATTAT-TATTATTATT-ATTATTATATTT-TTT
* *
15333348 TATATATTA-TATGATTATT-TTATTA-TATA--TTAT
1 TATATATTATTATTATTATTATTATTATTATATTTTTT
15333381 T-TATATTATTATTA-T-TTATTA-TA-TAT-TATTTTT
1 TATATATTATTATTATTATTATTATTATTATAT-TTTTT
* * * * *
15333414 CACAAATTATTATTATT-TTACATTATTATTTATATATTAT
1 TATATATTATTATTATTATT--ATTATTA-TTATATTTTTT
* *
15333454 TATTATATTTTTACTTGTATTA-TATGT-TTATTA-A-TTATT
1 TA-TATATTATTA--T-TATTATTAT-TATTATTATATTTTTT
* **
15333493 TATATA-TATTATATATTATT-TT-TTA-CATATATACTT
1 TATATATTATTAT-TATTATTATTATTATTATAT-TTTTT
*
15333529 T-TATATTA-TA-TATTA-TA-TATTATATATATTTTAT
1 TATATATTATTATTATTATTATTATTAT-TATATTTTTT
* * **
15333563 TATATATTATTATGTCATTTTTTTATATTATTATACATTTT
1 TATATATTATTAT-T-ATTATTAT-TATTATTATATTTTTT
* *
15333604 TATCTATATATTATTATCATTA
1 TATATAT-TATTATTATTATTA
15333626 AAGGTTTTTA
Statistics
Matches: 234, Mismatches: 41, Indels: 85
0.65 0.11 0.24
Matches are distributed among these distances:
31 7 0.03
32 13 0.06
33 20 0.09
34 20 0.09
35 27 0.12
36 15 0.06
37 10 0.04
38 14 0.06
39 37 0.16
40 22 0.09
41 25 0.11
42 17 0.07
43 2 0.01
44 5 0.02
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.62
Consensus pattern (38 bp):
TATATATTATTATTATTATTATTATTATTATATTTTTT
Found at i:15333355 original size:7 final size:7
Alignment explanation
Indices: 15333337--15333572 Score: 125
Period size: 7 Copynumber: 33.1 Consensus size: 7
15333327 TTTTTAACTT
15333337 TATATT-
1 TATATTA
15333343 TATATTA
1 TATATTA
15333350 TATATTA
1 TATATTA
15333357 TATGATTA
1 TAT-ATTA
*
15333365 TTTTATTA
1 -TATATTA
15333373 TATATTA
1 TATATTA
15333380 TTTATATTA
1 --TATATTA
15333389 T-TATTA
1 TATATTA
*
15333395 TTTATTA
1 TATATTA
15333402 TATATTA
1 TATATTA
*
15333409 T-TTTTCA
1 TATATT-A
* *
15333416 CAAATTA
1 TATATTA
*
15333423 TTATTATTT
1 -TA-TATTA
*
15333432 TACATTA
1 TATATTA
15333439 T-TATTTA
1 TATA-TTA
15333446 TATATTA
1 TATATTA
15333453 T-TATTA
1 TATATTA
*
15333459 TATTTTTA
1 TA-TATTA
*
15333467 CTTGTATTA
1 --TATATTA
*
15333476 TATGTT-
1 TATATTA
15333482 TATTAATTA
1 TA-T-ATTA
*
15333491 TTTA-TA
1 TATATTA
15333497 TATATTA
1 TATATTA
15333504 TATATTA
1 TATATTA
*
15333511 T-T-TTT
1 TATATTA
*
15333516 TACA-TA
1 TATATTA
*
15333522 TATACTTT
1 TATA-TTA
15333530 TATATTA
1 TATATTA
15333537 TATATTA
1 TATATTA
15333544 TATATTA
1 TATATTA
15333551 TATA-TA
1 TATATTA
*
15333557 TTTTATTA
1 -TATATTA
15333565 TATATTA
1 TATATTA
15333572 T
1 T
15333573 TATGTCATTT
Statistics
Matches: 175, Mismatches: 29, Indels: 51
0.69 0.11 0.20
Matches are distributed among these distances:
5 3 0.02
6 36 0.21
7 89 0.51
8 29 0.17
9 17 0.10
10 1 0.01
ACGTcount: A:0.35, C:0.03, G:0.01, T:0.61
Consensus pattern (7 bp):
TATATTA
Found at i:15333384 original size:45 final size:44
Alignment explanation
Indices: 15333335--15333617 Score: 163
Period size: 45 Copynumber: 6.5 Consensus size: 44
15333325 TATTTTTAAC
15333335 TTTATATTTATATTATATATTATATGATTATTTTATTATATATTA
1 TTTATATTTATATTATATATTATAT-ATTATTTTATTATATATTA
* * * *
15333380 TTTATA-TTATTATTATTTATTATATATTATTTT-TCACAAATTA
1 TTTATATTTA-TATTATATATTATATATTATTTTATTATATATTA
* *
15333423 -TTATTATTTTACATTAT-TATT-TATA-TATTATTATTATATTTTTA
1 TTTA-TA-TTTATATTATATATTATATATTATT-TTATTATA-TATTA
* * *
15333467 CTTGTA-TTATATGT-T-TATTA-ATTATTTATATATATTATATATTA
1 TTTATATTTATAT-TATATATTATA-TA-TTAT-TTTATTATATATTA
* * *
15333511 -TT-T-TTTACA-TATATACTTTTATATTA-TATATTATATATTA
1 TTTATATTTATATTATATA-TTATATATTATTTTATTATATATTA
*
15333551 TATATATTT-TATTATATATTAT-TATGTCATTTT-TT-TATATTA
1 TTTATATTTATATTATATATTATATAT-T-ATTTTATTATATATTA
* *
15333593 TTATACATTTTTATCTATATATTAT
1 TT-TATATTTATAT-TATATATTAT
15333618 TATCATTAAA
Statistics
Matches: 188, Mismatches: 21, Indels: 58
0.70 0.08 0.22
Matches are distributed among these distances:
40 15 0.08
41 9 0.05
42 44 0.23
43 43 0.23
44 31 0.16
45 45 0.24
46 1 0.01
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (44 bp):
TTTATATTTATATTATATATTATATATTATTTTATTATATATTA
Found at i:15333439 original size:50 final size:51
Alignment explanation
Indices: 15333369--15333464 Score: 135
Period size: 50 Copynumber: 1.9 Consensus size: 51
15333359 TGATTATTTT
* *
15333369 ATTATATATTATTTATATTATTA-TTATTTATTATATATTAT-TTTTCACAA
1 ATTATATATTATTTACATTATTATTTATATATTAT-TATTATATTTTCACAA
15333419 ATTAT-TATTATTTTACATTATTATTTATATATTATTATTATATTTT
1 ATTATATATTA-TTTACATTATTATTTATATATTATTATTATATTTT
15333465 TACTTGTATT
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
49 5 0.12
50 22 0.54
51 14 0.34
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.62
Consensus pattern (51 bp):
ATTATATATTATTTACATTATTATTTATATATTATTATTATATTTTCACAA
Found at i:15333619 original size:24 final size:22
Alignment explanation
Indices: 15333340--15333624 Score: 106
Period size: 21 Copynumber: 13.1 Consensus size: 22
15333330 TTAACTTTAT
*
15333340 ATTTATATTATATATTA-TATGATT
1 ATTT-TATTATATATTATTAT-A-C
*
15333364 ATTTTATTATATATTATT-TAT
1 ATTTTATTATATATTATTATAC
* *
15333385 ATTATTATTATTTATTA-TATATT
1 ATT-TTATTATATATTATTATA-C
* * * *
15333408 ATTTT-TCACAAATTATTAT-T
1 ATTTTATTATATATTATTATAC
* *
15333428 ATTTTA-CAT-TATTATT-TAT
1 ATTTTATTATATATTATTATAC
*
15333447 ATATTATTATTATATT-TT-TAC
1 ATTTTATTA-TATATTATTATAC
* *
15333468 -TTGTATTATATGTTTATTA-A-
1 ATTTTATTATAT-ATTATTATAC
* *
15333488 TTATTTA-TATATATTA-TATATT
1 AT-TTTATTATATATTATTATA-C
* * *
15333510 ATTTT-TTACATATATACTTTTAT
1 ATTTTATTATATAT-TA-TTATAC
*
15333533 ATTATATATTATATATTA-TATAT
1 ATT-T-TATTATATATTATTATAC
*
15333556 ATTTTATTATATATTATTATGTC
1 ATTTTATTATATATTATTAT-AC
15333579 ATTTT-TT-TATATTATTATAC
1 ATTTTATTATATATTATTATAC
15333599 ATTTTTATCTATATATTATTAT-C
1 A-TTTTAT-TATATATTATTATAC
15333622 ATT
1 ATT
15333625 AAAGGTTTTT
Statistics
Matches: 207, Mismatches: 23, Indels: 64
0.70 0.08 0.22
Matches are distributed among these distances:
18 1 0.00
19 17 0.08
20 23 0.11
21 61 0.29
22 39 0.19
23 36 0.17
24 20 0.10
25 3 0.01
26 7 0.03
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.61
Consensus pattern (22 bp):
ATTTTATTATATATTATTATAC
Found at i:15333619 original size:109 final size:104
Alignment explanation
Indices: 15333337--15333620 Score: 239
Period size: 102 Copynumber: 2.7 Consensus size: 104
15333327 TTTTTAACTT
* * *
15333337 TATATTTATATTATATATTA-TATGATTATTTTATTATATATTATT-TATATTATTATTATTTAT
1 TATATTT-TATTATATATTATTATG-TCATTTT-TT-TATATTATTATA-ATTTTTA-TATATA-
15333400 TATATATTATTTTTCACAAATTATTATTATTTTACATTATTATTTA
59 TATATATTATTTTTCACAAATTATTATTATTTTACATTATTATTTA
* *
15333446 TATATTATTATTATAT-TT-TTA---C-TTGTATTATATGT-TTATTAATTATTTATATATATTA
1 TATATT-TTATTATATATTATTATGTCATTTTTTTATAT-TATTA-TAATT-TTTATATATA-TA
* * *
15333504 TATATTATTTTTTACATATATACTT-TTATATTATATATTATATATTATA
61 TATATTATTTTTCACAAAT-TA-TTATTAT-TT-TACATTAT-TATT-TA
*
15333553 TATATTTTATTATATATTATTATGTCATTTTTTTATATTATTATACATTTTTATCTATATAT-TA
1 TATATTTTATTATATATTATTATGTCATTTTTTTATATTATTATA-ATTTTTATATATATATATA
15333617 TTAT
65 TTAT
15333621 CATTAAAGGT
Statistics
Matches: 144, Mismatches: 11, Indels: 40
0.74 0.06 0.21
Matches are distributed among these distances:
101 7 0.05
102 30 0.21
103 14 0.10
104 4 0.03
105 7 0.05
106 13 0.09
107 10 0.07
108 7 0.05
109 20 0.14
110 4 0.03
111 13 0.09
112 15 0.10
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (104 bp):
TATATTTTATTATATATTATTATGTCATTTTTTTATATTATTATAATTTTTATATATATATATAT
TATTTTTCACAAATTATTATTATTTTACATTATTATTTA
Found at i:15333648 original size:149 final size:145
Alignment explanation
Indices: 15333342--15333662 Score: 316
Period size: 149 Copynumber: 2.2 Consensus size: 145
15333332 AACTTTATAT
* *
15333342 TTATATTATATATTATATGATTATTTTATTATATATTATTTATATTATTATTATTTATTATATAT
1 TTATATTATATATTATAT-ATTATTTTATTACATATTATTTATATTATTATTATATATTATATAT
* * *
15333407 TATTTTTCACAAATTATTATTATTTTACATTATTATTTATATATTATTATTATATTTTTACTTGT
65 TATTTTTCACAAATTATTATTATTTTACATTATTATTTATACATTATTATTATATTATTACTTAT
* *
15333472 ATTATATGTTTATTAA
130 ATTAAAGGTTTATTAA
*
15333488 TTATTTATATATATTATATATTATTTT-TTACATATATACTTTTATATTATATATTATATATTAT
1 TTATAT-TATATATTATATATTATTTTATTACATAT-TA--TTTATATTAT-TATTATATATTAT
* * * ** *
15333552 ATA-TATTTTATTATATATTATTATGTCATTTT-TTTATATTA-TTATACATTTTTATCTATA-T
61 ATATTATTTT-TCACAAATTATTAT-T-ATTTTACAT-TATTATTTATACATTATTAT-TATATT
15333613 ATTA-TTATCATTAAAGGTTT-TTAA
121 ATTACTTAT-ATTAAAGGTTTATTAA
* *
15333637 CTTGTATTATATACTTAT-TTTTATTT
1 -TTATATTATATA-TTATATATTATTT
15333663 ATATGTTAAT
Statistics
Matches: 145, Mismatches: 17, Indels: 23
0.78 0.09 0.12
Matches are distributed among these distances:
145 7 0.05
146 15 0.10
147 12 0.08
148 16 0.11
149 46 0.32
150 35 0.24
151 14 0.10
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (145 bp):
TTATATTATATATTATATATTATTTTATTACATATTATTTATATTATTATTATATATTATATATT
ATTTTTCACAAATTATTATTATTTTACATTATTATTTATACATTATTATTATATTATTACTTATA
TTAAAGGTTTATTAA
Found at i:15344263 original size:74 final size:74
Alignment explanation
Indices: 15344132--15344275 Score: 243
Period size: 74 Copynumber: 1.9 Consensus size: 74
15344122 CAGTACAGAC
*
15344132 AGATAATTCAGAAAAATATTCAGAAAAGTTAAGAGTAATACTTACAGACTTGAGCCGGAGATTTG
1 AGATAATTCAGAAAAATATTCAGAAAAGTTAAGAGTAATACTTACAGACTTGAGCCGGAGATTCG
15344197 GAATGCGAT
66 GAATGCGAT
* * * *
15344206 AGATAATTCAGGAAAATATTCAGAAAAGTTTAGAGTAATACTTACAGGCTTGGGCCGGAGATTCG
1 AGATAATTCAGAAAAATATTCAGAAAAGTTAAGAGTAATACTTACAGACTTGAGCCGGAGATTCG
15344271 GAATG
66 GAATG
15344276 TCACCTTCTA
Statistics
Matches: 65, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
74 65 1.00
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.26
Consensus pattern (74 bp):
AGATAATTCAGAAAAATATTCAGAAAAGTTAAGAGTAATACTTACAGACTTGAGCCGGAGATTCG
GAATGCGAT
Found at i:15345598 original size:83 final size:83
Alignment explanation
Indices: 15345498--15345665 Score: 300
Period size: 83 Copynumber: 2.0 Consensus size: 83
15345488 GTAAATAACA
*
15345498 ACAGTCAAACATGCATTTAGGTCAATTTAACCCTAGGGGTATTTCGGTAATTTATCTACTAGGGA
1 ACAGTCAAACATGCATTTAGGTCAATTTAACCCTAGGGGTATTTCGGTAATTTACCTACTAGGGA
*
15345563 TAAGACTGTAAATTTTCC
66 TAAAACTGTAAATTTTCC
* *
15345581 ACAGTCAAACATGCATTTAGGTCAATTTAACCCTAGGGGTATTTTGGTAATTTACCTACTAGGGG
1 ACAGTCAAACATGCATTTAGGTCAATTTAACCCTAGGGGTATTTCGGTAATTTACCTACTAGGGA
15345646 TAAAACTGTAAATTTTCC
66 TAAAACTGTAAATTTTCC
15345664 AC
1 AC
15345666 TTTTTAAAGG
Statistics
Matches: 81, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
83 81 1.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (83 bp):
ACAGTCAAACATGCATTTAGGTCAATTTAACCCTAGGGGTATTTCGGTAATTTACCTACTAGGGA
TAAAACTGTAAATTTTCC
Found at i:15345632 original size:25 final size:26
Alignment explanation
Indices: 15345595--15345647 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15345585 TCAAACATGC
15345595 ATTTAGGTCAATTTAACC-CTAGGGGT
1 ATTTAGGTCAATTT-ACCACTAGGGGT
*
15345621 ATTTTGGT-AATTTACCTACTAGGGGT
1 ATTTAGGTCAATTTACC-ACTAGGGGT
15345647 A
1 A
15345648 AAACTGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 3 0.12
25 5 0.21
26 16 0.67
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTACCACTAGGGGT
Found at i:15347165 original size:26 final size:26
Alignment explanation
Indices: 15347129--15347282 Score: 245
Period size: 26 Copynumber: 5.9 Consensus size: 26
15347119 TGAAATTCCG
15347129 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
15347155 ATCATGGAACAATTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
15347181 ATCATGAAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
15347207 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* * *
15347233 ATCATGGAATATTTACCTAATCTATT
1 ATCATGGAACATTTACCTAACCCATT
15347259 ATCATGGAACATTTACCTAACCCA
1 ATCATGGAACATTTACCTAACCCA
15347283 ATAGCAATTT
Statistics
Matches: 114, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 114 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:15347386 original size:77 final size:77
Alignment explanation
Indices: 15347293--15347443 Score: 284
Period size: 77 Copynumber: 2.0 Consensus size: 77
15347283 ATAGCAATTT
15347293 GTACCATGAATTATGGATATCAAGTGCTCATATTGTCTACAACAACATGATGGCTAGCCACTTCA
1 GTACCATGAATTATGGATATCAAGTGCTCATATTGTCTACAACAACATGATGGCTAGCCACTTCA
15347358 TGTAAAATGGGA
66 TGTAAAATGGGA
* *
15347370 GTACCATGAATTATGGATATCAAGTGCTCATATTGTCTACAACAACATGCTGGCTGGCCACTTCA
1 GTACCATGAATTATGGATATCAAGTGCTCATATTGTCTACAACAACATGATGGCTAGCCACTTCA
15347435 TGTAAAATG
66 TGTAAAATG
15347444 ACGGGTTTGT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
77 72 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.29
Consensus pattern (77 bp):
GTACCATGAATTATGGATATCAAGTGCTCATATTGTCTACAACAACATGATGGCTAGCCACTTCA
TGTAAAATGGGA
Found at i:15349925 original size:24 final size:25
Alignment explanation
Indices: 15349898--15349946 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 25
15349888 TTTTTTTAAT
*
15349898 TAAATAAAAAAC-TTTAAAATATAA
1 TAAATAAAAAACATTTAAAACATAA
*
15349922 TAAATAAAATACATTTAAAACATAA
1 TAAATAAAAAACATTTAAAACATAA
15349947 AAAAAATATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 11 0.50
25 11 0.50
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (25 bp):
TAAATAAAAAACATTTAAAACATAA
Found at i:15349958 original size:19 final size:19
Alignment explanation
Indices: 15349936--15349973 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
15349926 TAAAATACAT
15349936 TTAAAACATAAAAA-AAATA
1 TTAAAACA-AAAAACAAATA
15349955 TTAAAACAAAAAACAAATA
1 TTAAAACAAAAAACAAATA
15349974 AAAATGAGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.74, C:0.08, G:0.00, T:0.18
Consensus pattern (19 bp):
TTAAAACAAAAAACAAATA
Found at i:15355036 original size:26 final size:26
Alignment explanation
Indices: 15355007--15355114 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
15354997 TGGTACAAAT
15355007 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
15355033 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15355059 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
15355085 TGATAATGGTTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
15355111 TGAT
1 TGAT
15355115 GGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.06, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15356775 original size:27 final size:26
Alignment explanation
Indices: 15356735--15356875 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 26
15356725 AGGAAGCGTC
*
15356735 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
15356762 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
15356789 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
15356816 CTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
** *
15356843 CTGGTGGCTCTGTGACAATATCTGTAT
1 CTGGTGGCTCTGCCACATTATCTG-AT
15356870 CTGGTG
1 CTGGTG
15356876 ACTTCTTCAC
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.10
27 86 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.24, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:15356817 original size:54 final size:54
Alignment explanation
Indices: 15356735--15356851 Score: 216
Period size: 54 Copynumber: 2.2 Consensus size: 54
15356725 AGGAAGCGTC
*
15356735 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
*
15356789 CTGGTGGCTATGCCACGATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
15356843 CTGGTGGCT
1 CTGGTGGCT
15356852 CTGTGACAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTAGTGGCTCTGCCACATATATCTGTT
Found at i:15356887 original size:27 final size:26
Alignment explanation
Indices: 15356748--15356893 Score: 114
Period size: 27 Copynumber: 5.4 Consensus size: 26
15356738 GTGGCTATGC
* * *
15356748 CACAATTATCTGATCTGGTGGCTCTGC
1 CACAA-TATCTGTTCTGGTGACTCTGT
* * *
15356775 CACATATATCTGTTCTGGTGGCTATGC
1 CACA-ATATCTGTTCTGGTGACTCTGT
* * * * *
15356802 CACGATTATCTGATCTAGTGGCTCTGC
1 CAC-AATATCTGTTCTGGTGACTCTGT
*
15356829 CACATATATCTGTTCTGGTGGCTCTGT
1 CACA-ATATCTGTTCTGGTGACTCTGT
*
15356856 GACAATATCTGTATCTGGTGACTTCT-T
1 CACAATATCTGT-TCTGGTGAC-TCTGT
15356883 CACAATATCTG
1 CACAATATCTG
15356894 GCAGCCTCGT
Statistics
Matches: 101, Mismatches: 13, Indels: 10
0.81 0.10 0.08
Matches are distributed among these distances:
26 9 0.09
27 87 0.86
28 5 0.05
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (26 bp):
CACAATATCTGTTCTGGTGACTCTGT
Found at i:15364912 original size:42 final size:41
Alignment explanation
Indices: 15364799--15364921 Score: 160
Period size: 41 Copynumber: 3.0 Consensus size: 41
15364789 AAGCCTAAAT
* * * *
15364799 AATACACCGGCA-CAGAGCCTGCTAGGTAATAAACCTGATTT
1 AATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTGA-TA
* *
15364840 AATACACCGGAAT-AAAGCCTGCCAGGCAATAAGCCTGATA
1 AATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTGATA
15364880 ACATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTGATA
1 A-ATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTGATA
15364922 TATCACTGTT
Statistics
Matches: 71, Mismatches: 8, Indels: 5
0.85 0.10 0.06
Matches are distributed among these distances:
40 2 0.03
41 43 0.61
42 26 0.37
ACGTcount: A:0.37, C:0.26, G:0.20, T:0.18
Consensus pattern (41 bp):
AATACACCGGCATCAAAGCCTGCTAGGCAATAAGCCTGATA
Found at i:15367634 original size:21 final size:22
Alignment explanation
Indices: 15367608--15367657 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
15367598 GTTTCAGCCG
15367608 TGTGGCTC-TCCCACACA-CCCA
1 TGTGGCTCATCCCACA-AGCCCA
15367629 TGTGGC-CATCCCACAAGCCCA
1 TGTGGCTCATCCCACAAGCCCA
15367650 TG-GGCTCA
1 TGTGGCTCA
15367658 ACCGTATGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
20 5 0.19
21 21 0.81
ACGTcount: A:0.20, C:0.42, G:0.20, T:0.18
Consensus pattern (22 bp):
TGTGGCTCATCCCACAAGCCCA
Found at i:15382553 original size:19 final size:17
Alignment explanation
Indices: 15382529--15382569 Score: 64
Period size: 19 Copynumber: 2.3 Consensus size: 17
15382519 ATTATATGCT
15382529 ATATACTCTATATATAGTA
1 ATATACTCTATATA-A-TA
15382548 ATATACTCTATATAATA
1 ATATACTCTATATAATA
15382565 ATATA
1 ATATA
15382570 ATATATTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 7 0.32
18 1 0.05
19 14 0.64
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (17 bp):
ATATACTCTATATAATA
Found at i:15382561 original size:17 final size:18
Alignment explanation
Indices: 15382529--15382569 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
15382519 ATTATATGCT
*
15382529 ATATACTCTATATATAGTA
1 ATATACTC-ATATATAATA
15382548 ATATACTC-TATATAATA
1 ATATACTCATATATAATA
15382565 ATATA
1 ATATA
15382570 ATATATTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 13 0.62
19 8 0.38
ACGTcount: A:0.46, C:0.10, G:0.02, T:0.41
Consensus pattern (18 bp):
ATATACTCATATATAATA
Found at i:15389370 original size:17 final size:18
Alignment explanation
Indices: 15389343--15389386 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
15389333 CCTTCATTTC
15389343 TTTCTTTTATTCTTTTA-G
1 TTTC-TTTATTCTTTTATG
15389361 TTTCTTTATTCTTTTATG
1 TTTCTTTATTCTTTTATG
*
15389379 TTTATTTA
1 TTTCTTTA
15389387 CTTTATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.14, C:0.09, G:0.05, T:0.73
Consensus pattern (18 bp):
TTTCTTTATTCTTTTATG
Found at i:15389435 original size:18 final size:17
Alignment explanation
Indices: 15389390--15389443 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
15389380 TTATTTACTT
15389390 TATTATTTAATAAT-AA
1 TATTATTTAATAATAAA
15389406 TAATT-TTT-ATAATAAA
1 T-ATTATTTAATAATAAA
*
15389422 TATCTATTTAATAAAAAA
1 TAT-TATTTAATAATAAA
15389440 TATT
1 TATT
15389444 TATATTACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 9
0.76 0.02 0.21
Matches are distributed among these distances:
15 7 0.22
16 8 0.25
17 7 0.22
18 10 0.31
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (17 bp):
TATTATTTAATAATAAA
Found at i:15395090 original size:18 final size:18
Alignment explanation
Indices: 15395056--15395136 Score: 67
Period size: 18 Copynumber: 4.5 Consensus size: 18
15395046 ATAAAAGTAT
*
15395056 TGAATGACTGA-CTGTTAC
1 TGAATAACTGATC-GTTAC
*
15395074 TGAATAATTGATCGTTAC
1 TGAATAACTGATCGTTAC
*
15395092 TGAATAACTGATTC-CTAC
1 TGAATAACTGA-TCGTTAC
** * *
15395110 TGAGCAAATGATTGTTAC
1 TGAATAACTGATCGTTAC
15395128 TGAATAACT
1 TGAATAACT
15395137 AATTCTACTG
Statistics
Matches: 48, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
17 1 0.02
18 44 0.92
19 3 0.06
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (18 bp):
TGAATAACTGATCGTTAC
Found at i:15395096 original size:36 final size:35
Alignment explanation
Indices: 15395056--15395155 Score: 96
Period size: 36 Copynumber: 2.8 Consensus size: 35
15395046 ATAAAAGTAT
* *
15395056 TGAATGACTGACTGTTACTGAATAATTGATCGTTAC
1 TGAATAACTGAAT-TTACTGAATAATTGATCGTTAC
** * *
15395092 TGAATAACTG-ATTCCTACTGAGCAAATGATTGTTAC
1 TGAATAACTGAATT--TACTGAATAATTGATCGTTAC
15395128 TGAATAACT-AATTCTACTGAATAATTGA
1 TGAATAACTGAATT-TACTGAATAATTGA
15395156 ATATTACTAA
Statistics
Matches: 52, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
34 1 0.02
35 13 0.25
36 38 0.73
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (35 bp):
TGAATAACTGAATTTACTGAATAATTGATCGTTAC
Found at i:15399945 original size:26 final size:26
Alignment explanation
Indices: 15399916--15400153 Score: 476
Period size: 26 Copynumber: 9.2 Consensus size: 26
15399906 TGGTACAAAT
15399916 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15399942 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15399968 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15399994 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15400020 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15400046 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15400072 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15400098 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15400124 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15400150 TGAT
1 TGAT
15400154 CGGAATTTCA
Statistics
Matches: 212, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 212 1.00
ACGTcount: A:0.31, C:0.08, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15407125 original size:26 final size:26
Alignment explanation
Indices: 15407095--15407305 Score: 341
Period size: 26 Copynumber: 8.1 Consensus size: 26
15407085 ATGTTGTTGA
*
15407095 GATAATGGGTTAGGTAATTGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
15407121 GATAATGGGTTAGGTAAATGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
* * *
15407147 GATAATGGATTAGGTAAATATTTCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
*
15407173 GATAATGGGTTAGGTAATTGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
15407199 GATAATGGGTTAGGTAAATGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
* * *
15407225 GATAATGGATTAGGTAAATATTTCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
*
15407251 GATAATGGGTTAGGTAATTGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
15407277 GATAATGGGTTAGGTAAATGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
15407303 GAT
1 GAT
15407306 CGGAATTTCA
Statistics
Matches: 168, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 168 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (26 bp):
GATAATGGGTTAGGTAAATGTTCCAT
Found at i:15407195 original size:78 final size:78
Alignment explanation
Indices: 15407095--15407305 Score: 422
Period size: 78 Copynumber: 2.7 Consensus size: 78
15407085 ATGTTGTTGA
15407095 GATAATGGGTTAGGTAATTGTTCCATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAG
1 GATAATGGGTTAGGTAATTGTTCCATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAG
15407160 GTAAATATTTCAT
66 GTAAATATTTCAT
15407173 GATAATGGGTTAGGTAATTGTTCCATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAG
1 GATAATGGGTTAGGTAATTGTTCCATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAG
15407238 GTAAATATTTCAT
66 GTAAATATTTCAT
15407251 GATAATGGGTTAGGTAATTGTTCCATGATAATGGGTTAGGTAAATGTTCCATGAT
1 GATAATGGGTTAGGTAATTGTTCCATGATAATGGGTTAGGTAAATGTTCCATGAT
15407306 CGGAATTTCA
Statistics
Matches: 133, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
78 133 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.37
Consensus pattern (78 bp):
GATAATGGGTTAGGTAATTGTTCCATGATAATGGGTTAGGTAAATGTTCCATGATAATGGATTAG
GTAAATATTTCAT
Found at i:15407820 original size:70 final size:70
Alignment explanation
Indices: 15407707--15407846 Score: 262
Period size: 70 Copynumber: 2.0 Consensus size: 70
15407697 TGCTAAAGGG
*
15407707 AAAAATCGGCTAACATGTTGTACTTTAAAATGATGAAATGGAGATTATACTTAAGTAAAATCATA
1 AAAAATCGACTAACATGTTGTACTTTAAAATGATGAAATGGAGATTATACTTAAGTAAAATCATA
15407772 GATAT
66 GATAT
*
15407777 AAAAATCGACTAACATGTTGTGCTTTAAAATGATGAAATGGAGATTATACTTAAGTAAAATCATA
1 AAAAATCGACTAACATGTTGTACTTTAAAATGATGAAATGGAGATTATACTTAAGTAAAATCATA
15407842 GATAT
66 GATAT
15407847 GTGATGATTG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.44, C:0.09, G:0.16, T:0.31
Consensus pattern (70 bp):
AAAAATCGACTAACATGTTGTACTTTAAAATGATGAAATGGAGATTATACTTAAGTAAAATCATA
GATAT
Found at i:15408909 original size:26 final size:25
Alignment explanation
Indices: 15408857--15408909 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 25
15408847 TTTACAGTTT
15408857 TACCCCTAGTAGGTAAATTACCAAAA
1 TACCCCTAG-AGGTAAATTACCAAAA
*
15408883 TACCCCTAG-GGTTAAATTGACCTAAA
1 TACCCCTAGAGG-TAAATT-ACCAAAA
15408909 T
1 T
15408910 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
24 2 0.08
25 6 0.25
26 16 0.67
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (25 bp):
TACCCCTAGAGGTAAATTACCAAAA
Found at i:15413733 original size:14 final size:14
Alignment explanation
Indices: 15413716--15413770 Score: 58
Period size: 14 Copynumber: 3.9 Consensus size: 14
15413706 GGTGTTTGTT
15413716 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
*
15413730 GTTTAGGGTTTAGG
1 GTTTAAGGTTTAGG
* * *
15413744 GTCTCAGGTTTAAG
1 GTTTAAGGTTTAGG
15413758 GTTTCAA-GTTTAG
1 GTTT-AAGGTTTAG
15413771 AGTATAATTT
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
14 31 0.97
15 1 0.03
ACGTcount: A:0.20, C:0.05, G:0.33, T:0.42
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:15413816 original size:15 final size:15
Alignment explanation
Indices: 15413796--15413827 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
15413786 TTTAATTTAG
15413796 AAGATAAATATAAAT
1 AAGATAAATATAAAT
*
15413811 AAGATAAATATATAT
1 AAGATAAATATAAAT
15413826 AA
1 AA
15413828 ATTATTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (15 bp):
AAGATAAATATAAAT
Found at i:15415247 original size:12 final size:12
Alignment explanation
Indices: 15415230--15415254 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15415220 CTCTTTTTAG
15415230 TTCATCATTGTT
1 TTCATCATTGTT
15415242 TTCATCATTGTT
1 TTCATCATTGTT
15415254 T
1 T
15415255 ACTCCTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.60
Consensus pattern (12 bp):
TTCATCATTGTT
Found at i:15416933 original size:25 final size:24
Alignment explanation
Indices: 15416905--15416952 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
15416895 AGCAAAACCT
*
15416905 TTTTTGTTTCCAAATTATTTTTAAG
1 TTTTT-TTTCCAAAATATTTTTAAG
**
15416930 TTTTTTTTTGAAAATATTTTTAA
1 TTTTTTTTCCAAAATATTTTTAA
15416953 ATATATATGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.27, C:0.04, G:0.06, T:0.62
Consensus pattern (24 bp):
TTTTTTTTCCAAAATATTTTTAAG
Found at i:15431809 original size:47 final size:47
Alignment explanation
Indices: 15431734--15431874 Score: 228
Period size: 47 Copynumber: 3.0 Consensus size: 47
15431724 CATTAAATTT
* * *
15431734 TTGATGTATCATTTAGATTTGCTATTATTGGTTGGATTTGATGTTTC
1 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
*
15431781 TTGAAGTATCATTTAGATTTGTTGTTATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
* *
15431828 TTGAAGTATCATTCAGATTTGCTGTCATTGGTTGGATTTGATGTTGC
1 TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
15431875 AGGAAGGATT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 87 1.00
ACGTcount: A:0.19, C:0.07, G:0.24, T:0.50
Consensus pattern (47 bp):
TTGAAGTATCATTTAGATTTGCTGTTATTGGTTGGATTTGATGTTGC
Found at i:15432078 original size:43 final size:43
Alignment explanation
Indices: 15431968--15432151 Score: 246
Period size: 43 Copynumber: 4.3 Consensus size: 43
15431958 AACATACATT
* ** * **
15431968 TTTAGCGGCGTTTGTAGAGAAAGCGCCGCTAAAGAACATGGCC
1 TTTAGCGGCGTTTGTACAGAAAGCGCCGCTAAAGGTCACGTTC
*
15432011 TTTAGC-GCGTTTGTACAGAAAGCGCCGCTAAAGGTCAAGTTC
1 TTTAGCGGCGTTTGTACAGAAAGCGCCGCTAAAGGTCACGTTC
15432053 TTTAGCGGCGTTTGTACAGAAAGCGCCGCTAAAGGTCACGTTC
1 TTTAGCGGCGTTTGTACAGAAAGCGCCGCTAAAGGTCACGTTC
* * *
15432096 TTTAGCGGCGTTTGTCCA-AAACACGCCTCTAAAGGTCACGTTC
1 TTTAGCGGCGTTTGTACAGAAA-GCGCCGCTAAAGGTCACGTTC
*
15432139 TTTAGAGGCGTTT
1 TTTAGCGGCGTTT
15432152 TCTTGAAAGC
Statistics
Matches: 128, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
42 39 0.30
43 89 0.70
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTACAGAAAGCGCCGCTAAAGGTCACGTTC
Found at i:15432161 original size:85 final size:85
Alignment explanation
Indices: 15431968--15432188 Score: 241
Period size: 85 Copynumber: 2.6 Consensus size: 85
15431958 AACATACATT
* * ** ** *
15431968 TTTAGCGGCGTTTGTAGAGAAAGCGCCGCTAAAGAACATGGCCTTTAGCGCGTTTGTACAGAAAG
1 TTTAGAGGCGTTTGTACAGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGCGTTTGTACAGAAAA
15432033 CGCCGCTAAAGGTCAAGTTC
66 CGCCGCTAAAGGTCAAGTTC
* * *
15432053 TTTAGCGGCGTTTGTACAGAAAGCGCCGCTAAAGGTCACGTTCTTTAGCGGCGTTTGTCCA-AAA
1 TTTAGAGGCGTTTGTACAGAAAGCGCCGCTAAAGGTCATGTTCTTTAGC-GCGTTTGTACAGAAA
* *
15432117 CACGCCTCTAAAGGTCACGTTC
65 -ACGCCGCTAAAGGTCAAGTTC
* * *
15432139 TTTAGAGGCGTTT-T-CTTGAAAGCGCGCCGCTAAAAGTCTTGTTCTTTAGC
1 TTTAGAGGCGTTTGTAC-AGAAA--GCGCCGCTAAAGGTCATGTTCTTTAGC
15432189 AGTGTTTTTT
Statistics
Matches: 116, Mismatches: 15, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
84 1 0.01
85 51 0.44
86 40 0.34
87 24 0.21
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (85 bp):
TTTAGAGGCGTTTGTACAGAAAGCGCCGCTAAAGGTCATGTTCTTTAGCGCGTTTGTACAGAAAA
CGCCGCTAAAGGTCAAGTTC
Found at i:15433472 original size:8 final size:8
Alignment explanation
Indices: 15433459--15433492 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
15433449 CTTCATTTCT
15433459 TTCTTTTA
1 TTCTTTTA
15433467 TTCTTTTA
1 TTCTTTTA
*
15433475 TTTTCTTTA
1 TTCT-TTTA
15433484 TTCTTTTA
1 TTCTTTTA
15433492 T
1 T
15433493 GTTTATTTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.76
Consensus pattern (8 bp):
TTCTTTTA
Found at i:15433485 original size:17 final size:18
Alignment explanation
Indices: 15433458--15433492 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
15433448 CCTTCATTTC
15433458 TTTCTTTTATTCTTTTAT
1 TTTCTTTTATTCTTTTAT
15433476 TTTC-TTTATTCTTTTAT
1 TTTCTTTTATTCTTTTAT
15433493 GTTTATTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTCTTTTATTCTTTTAT
Found at i:15433514 original size:23 final size:23
Alignment explanation
Indices: 15433471--15433514 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
15433461 CTTTTATTCT
* **
15433471 TTTATTTTCTTTATTCTTTTATG
1 TTTATTTACTTTATTAATTTATG
15433494 TTTATTTACTTTATTAATTTA
1 TTTATTTACTTTATTAATTTA
15433515 ATAATAATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.20, C:0.07, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTATTTACTTTATTAATTTATG
Found at i:15434415 original size:108 final size:107
Alignment explanation
Indices: 15434237--15434443 Score: 315
Period size: 108 Copynumber: 1.9 Consensus size: 107
15434227 TTCGTTAAAA
* * * *
15434237 GGTAGTTAGTTTCGATTAGTTATCTAAAACCTTTCGAAACCTCTGGCACTATTATTTTCCTTTTG
1 GGTAGTTAGCTTCGATTAGTTATCTAAAACCTTTAGAAACCTCCGACACTATTATTTTCCTTTTG
* *
15434302 TTCTTTCTTTTTCTGTGAGAATTTCTATAATTTTAGTTGTGT
66 ATCTTTCTTTTTCTGCGAGAATTTCTATAATTTTAGTTGTGT
* * *
15434344 GGTAGTTAGCTTCGGTTGGTTATCTAAAACCTTCTAGAAACCTCCGACACTATTATTTTCTTTTT
1 GGTAGTTAGCTTCGATTAGTTATCTAAAACCTT-TAGAAACCTCCGACACTATTATTTTCCTTTT
*
15434409 GATCTTTCTTTTTCTGCGAGAATTTCTATCATTTT
65 GATCTTTCTTTTTCTGCGAGAATTTCTATAATTTT
15434444 TCTTGCAATA
Statistics
Matches: 89, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
107 30 0.34
108 59 0.66
ACGTcount: A:0.21, C:0.17, G:0.14, T:0.48
Consensus pattern (107 bp):
GGTAGTTAGCTTCGATTAGTTATCTAAAACCTTTAGAAACCTCCGACACTATTATTTTCCTTTTG
ATCTTTCTTTTTCTGCGAGAATTTCTATAATTTTAGTTGTGT
Found at i:15434872 original size:42 final size:42
Alignment explanation
Indices: 15434790--15434900 Score: 123
Period size: 42 Copynumber: 2.6 Consensus size: 42
15434780 CACGGCTAGG
* * * *
15434790 GACATAGGCGTGTGCCCAGTCCGTGTAAGCCACACGGGCAAA
1 GACATAGGCGTGTGCCCAGGCCATGTGAGCCACACAGGCAAA
* * * *
15434832 GACAAAGGCGTGTGCCCAGGCCATGTGAGCTATACAGGCAAG
1 GACATAGGCGTGTGCCCAGGCCATGTGAGCCACACAGGCAAA
* * *
15434874 GATATAGGCGTGTGTCCAAGCCATGTG
1 GACATAGGCGTGTGCCCAGGCCATGTG
15434901 GCATATGAAT
Statistics
Matches: 57, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 57 1.00
ACGTcount: A:0.26, C:0.24, G:0.32, T:0.17
Consensus pattern (42 bp):
GACATAGGCGTGTGCCCAGGCCATGTGAGCCACACAGGCAAA
Found at i:15443144 original size:13 final size:13
Alignment explanation
Indices: 15443122--15443154 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
15443112 AAGGGTTTGT
15443122 TTAT-TAAACTAA
1 TTATCTAAACTAA
15443134 TTATCTAAACTAA
1 TTATCTAAACTAA
*
15443147 TTAACTAA
1 TTATCTAA
15443155 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:15446081 original size:6 final size:6
Alignment explanation
Indices: 15446072--15446134 Score: 65
Period size: 6 Copynumber: 10.5 Consensus size: 6
15446062 AATAAAATTG
* * *
15446072 AAATGA AAATAA AAATCA AAAGAA AAATAA AAAT-A AAATAA AAATAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
* *
15446119 GAGTAA ATAATAA AAA
1 AAATAA A-AATAA AAA
15446135 AACAAATAGG
Statistics
Matches: 46, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
5 5 0.11
6 36 0.78
7 5 0.11
ACGTcount: A:0.76, C:0.02, G:0.06, T:0.16
Consensus pattern (6 bp):
AAATAA
Found at i:15446084 original size:17 final size:17
Alignment explanation
Indices: 15446062--15446118 Score: 62
Period size: 17 Copynumber: 3.3 Consensus size: 17
15446052 AAAATAAAAT
* *
15446062 AATAAAATTGAAATGAA
1 AATAAAAATAAAATGAA
15446079 AATAAAAATCAAAA-GAAA
1 AATAAAAAT-AAAATG-AA
*
15446097 AATAAAAATAAAATAAA
1 AATAAAAATAAAATGAA
15446114 AATAA
1 AATAA
15446119 GAGTAAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
17 20 0.59
18 14 0.41
ACGTcount: A:0.75, C:0.02, G:0.05, T:0.18
Consensus pattern (17 bp):
AATAAAAATAAAATGAA
Found at i:15446125 original size:17 final size:17
Alignment explanation
Indices: 15446077--15446118 Score: 66
Period size: 17 Copynumber: 2.4 Consensus size: 17
15446067 AATTGAAATG
15446077 AAAATAAAAATCAAAAGA
1 AAAATAAAAAT-AAAAGA
*
15446095 AAAATAAAAATAAAATA
1 AAAATAAAAATAAAAGA
15446112 AAAATAA
1 AAAATAA
15446119 GAGTAAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 12 0.52
18 11 0.48
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (17 bp):
AAAATAAAAATAAAAGA
Found at i:15453876 original size:13 final size:13
Alignment explanation
Indices: 15453854--15453886 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
15453844 AAGGGTTTGT
15453854 TTAT-TAAACTAA
1 TTATCTAAACTAA
15453866 TTATCTAAACTAA
1 TTATCTAAACTAA
*
15453879 TTAACTAA
1 TTATCTAA
15453887 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:15456603 original size:49 final size:49
Alignment explanation
Indices: 15456531--15456628 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
15456521 CACATCACTG
15456531 CTCCCACAAGCACCACGCCCGCACACCCTAGCTACTTGTGCGGCATTCC
1 CTCCCACAAGCACCACGCCCGCACACCCTAGCTACTTGTGCGGCATTCC
* * *
15456580 CTCCCA-AATGCATCACGCCCGCACACCCTAGCTGCTTGTGTGGCATTCC
1 CTCCCACAA-GCACCACGCCCGCACACCCTAGCTACTTGTGCGGCATTCC
15456629 TCTTCCATCC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
48 2 0.04
49 43 0.96
ACGTcount: A:0.19, C:0.44, G:0.17, T:0.19
Consensus pattern (49 bp):
CTCCCACAAGCACCACGCCCGCACACCCTAGCTACTTGTGCGGCATTCC
Found at i:15460679 original size:13 final size:13
Alignment explanation
Indices: 15460663--15460687 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15460653 CTTCACACAG
15460663 CCGATACACACGA
1 CCGATACACACGA
15460676 CCGATACACACG
1 CCGATACACACG
15460688 GCCGTGTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.40, G:0.16, T:0.08
Consensus pattern (13 bp):
CCGATACACACGA
Found at i:15461700 original size:47 final size:44
Alignment explanation
Indices: 15461640--15461908 Score: 168
Period size: 47 Copynumber: 5.8 Consensus size: 44
15461630 ACAACTCTAA
* *
15461640 GCCGATGCGTGTCCCAGACACGTCTTACACTGGCTATCTCTGTCGAG
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTATCT-TGT--AG
**
15461687 GCCGATGCATGTCCCAGACATATCTTACACTGGCACTCATCTCTGT--
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGG--CT-ATCT-TGTAG
* * *
15461733 GCCGATTTCATGTCCCAGACATGGTTTTACACTGGCTATCATAGTATG
1 GCCGA-TGCATGTCCCAGACA-GGTCTTACACTGGCTATC-TTGTA-G
* * * * * *
15461781 GCTGATGCATGTCCCAGACATGTCTTACACTAGCCCT-TGTCTGGAT
1 GCCGATGCATGTCCCAGACAGGTCTTACACT-G-GCTATCT-TGTAG
*
15461827 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGT-G
1 GCCGATG-CATGTCCCAGACA-GGTCTTACACTGGCTATC-T--TGTAG
* * * **
15461875 GCCGAAGCATGTCCTAGACATGTCTGGCACTGGC
1 GCCGATGCATGTCCCAGACAGGTCTTACACTGGC
15461909 GCACAAATCA
Statistics
Matches: 176, Mismatches: 29, Indels: 35
0.73 0.12 0.15
Matches are distributed among these distances:
45 5 0.03
46 37 0.21
47 89 0.51
48 33 0.19
49 4 0.02
50 8 0.05
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACAGGTCTTACACTGGCTATCTTGTAG
Found at i:15461790 original size:94 final size:93
Alignment explanation
Indices: 15461547--15461899 Score: 324
Period size: 94 Copynumber: 3.8 Consensus size: 93
15461537 GGATATATTA
* * * * * * *
15461547 CCGATGCCATGTCCCAAACATGGTATTACACTGGCTCTCATA-TACGCGTGCTGATGCATGTCTC
1 CCGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTA--TG-GCCGATGCATGTCCC
* * **
15461611 AGGCATGTCTTACACTAGCA-CAACTCTAAG
63 AGACATGTCTTACACTAGCACCATCTCTGTG
* * * *
15461641 CCGA-TGCGTGTCCCAGACA-CGTCTTACACTGGCTATC-TCTGTCGA-GGCCGATGCATGTCCC
1 CCGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCAT-AGT--ATGGCCGATGCATGTCCC
* *
15461702 AGACATATCTTACACTGGCACTCATCTCTGTG
63 AGACATGTCTTACACTAGCAC-CATCTCTGTG
* * *
15461734 CCGATTTCATGTCCCAGACATGGTTTTACACTGGCTATCATAGTATGGCTGATGCATGTCCCAGA
1 CCGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGA
* *
15461799 CATGTCTTACACTAGC-CCTTGTCTGGATG
66 CATGTCTTACACTAGCACCATCTCT-G-TG
* * * * * *
15461828 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCCGAAGCATGTCCTAGA
1 CCGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGA
15461893 CATGTCT
66 CATGTCT
15461900 GGCACTGGCG
Statistics
Matches: 212, Mismatches: 35, Indels: 24
0.78 0.13 0.09
Matches are distributed among these distances:
91 31 0.15
92 21 0.10
93 26 0.12
94 114 0.54
95 19 0.09
96 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (93 bp):
CCGATTCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCCGATGCATGTCCCAGA
CATGTCTTACACTAGCACCATCTCTGTG
Found at i:15467247 original size:186 final size:184
Alignment explanation
Indices: 15466842--15467415 Score: 779
Period size: 186 Copynumber: 3.1 Consensus size: 184
15466832 TTTTGTAAAC
* * * * * * * *
15466842 TTATTGTCTACCATTTGCATAATAATTGCCATAAGAAATAGATAAATTAGTTCCTAATTTAGATT
1 TTATTGTCTACCATTTGCATACTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATT
* * * *
15466907 ACTGTTTGGTTATTGTCTGCCATTTGTATGATACTATTTAGGATTAAAGTGCATGATTATTGTTT
66 ATTGTTTGG-TATTGTCTGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTT
* * *
15466972 GGTTATTTTACATGACAGAAATAGAATTTTTTTTTGTTTAAAACTATTTTTGTATTGG
130 GGTTATTGTACATGACAGAAATA-AATTTTTTTATG-TT-AAATTATTTTTGTATTGG
*
15467030 TTATTGTCTACCATTTGCATACTAATTGCCTTAGGAAAGAGACAAATCAGTCCCTATTTTGGATT
1 TTATTGTCTACCATTTGCATACTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATT
* *
15467095 ATTGTTTGGCTATTGTCTGCCATGTGCATGATACTATTTTGGGTAAAAAGTGCATGATTATTGTT
66 ATTGTTTGG-TATTGTCTGCCATGTGCATGATACTATTTTGGAT-TAAAGTGCATGATTATTGTT
15467160 TGGTTATTGTACATGACAGAAATAAATTTTTTTATGTTAAATTATTTTTGTATTGG
129 TGGTTATTGTACATGACAGAAATAAATTTTTTTATGTTAAATTATTTTTGTATTGG
* * * * *
15467216 CTATTGCCTACCATTTGCATACTAATTGCCTTAGGAAAGTGACAAATCAATTTCTATTTTGGATT
1 TTATTGTCTACCATTTGCATACTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATT
* * *
15467281 ATTGGTTGGTGATTGTTTGCCATGTTCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTT
66 ATTGTTTGGT-ATTGTCTGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTT
* * ** * * * *
15467346 GATTATTGCACATGACAGAAATGGATTTTTTTGTGTTATATTGTTTTTGTGTTGG
130 GGTTATTGTACATGACAGAAATAAATTTTTTTATGTTAAATTATTTTTGTATTGG
15467401 TTATTGTCTACCATT
1 TTATTGTCTACCATT
15467416 GCCTAGGTTT
Statistics
Matches: 344, Mismatches: 40, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
185 81 0.24
186 114 0.33
187 2 0.01
188 105 0.31
189 42 0.12
ACGTcount: A:0.27, C:0.11, G:0.18, T:0.45
Consensus pattern (184 bp):
TTATTGTCTACCATTTGCATACTAATTGCCTTAGGAAAGAGACAAATCAGTTCCTATTTTGGATT
ATTGTTTGGTATTGTCTGCCATGTGCATGATACTATTTTGGATTAAAGTGCATGATTATTGTTTG
GTTATTGTACATGACAGAAATAAATTTTTTTATGTTAAATTATTTTTGTATTGG
Found at i:15467520 original size:104 final size:102
Alignment explanation
Indices: 15467357--15467549 Score: 253
Period size: 104 Copynumber: 1.9 Consensus size: 102
15467347 ATTATTGCAC
* * * * * * *
15467357 ATGACAGAAATGGATTTTTTTGTGTTATATTGTTTTTGTGTTGGTTATTGTCTACCATTGCCTAG
1 ATGACAGAAATGGATGTGTTTGTATTAAATTGTTTTTGTATTGATTATTGTCCACCATTGCCTAG
15467422 GTT-TAGGGTTAAAGTGTTTGGTTATTGTTTGCCATGTGT
66 GTTGTA---TTAAAGTGTTTGGTTATTGTTTGCCATGTGT
** *
15467461 ATGACAGAAATGGATGTGTTTGTATTAAATTGTTTTTGTATTGATTATTGTCCGTCATTGCCTAT
1 ATGACAGAAATGGATGTGTTTGTATTAAATTGTTTTTGTATTGATTATTGTCCACCATTGCCTAG
*
15467526 GTTGTATTAAATTGTTTGGTTATT
66 GTTGTATTAAAGTGTTTGGTTATT
15467550 ATCTACCTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
102 17 0.22
104 58 0.75
105 2 0.03
ACGTcount: A:0.21, C:0.07, G:0.23, T:0.49
Consensus pattern (102 bp):
ATGACAGAAATGGATGTGTTTGTATTAAATTGTTTTTGTATTGATTATTGTCCACCATTGCCTAG
GTTGTATTAAAGTGTTTGGTTATTGTTTGCCATGTGT
Found at i:15469615 original size:21 final size:21
Alignment explanation
Indices: 15469589--15469638 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
15469579 AGTGGTTGCT
15469589 CCAACTCAACAAAAGGA-TACC
1 CCAACTCAACAAAA-GATTACC
*
15469610 CCAACTCAACAAGAGATTACC
1 CCAACTCAACAAAAGATTACC
15469631 CCAACTCA
1 CCAACTCA
15469639 GTAGGAAGCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 2 0.07
21 25 0.93
ACGTcount: A:0.44, C:0.36, G:0.08, T:0.12
Consensus pattern (21 bp):
CCAACTCAACAAAAGATTACC
Found at i:15481838 original size:26 final size:26
Alignment explanation
Indices: 15481809--15481865 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
15481799 ACAAAAATTA
15481809 AAAATGATTAAAAATGGTAAAAGAAG
1 AAAATGATTAAAAATGGTAAAAGAAG
15481835 AAAATGATTAAAAATGGTAAAAGAAG
1 AAAATGATTAAAAATGGTAAAAGAAG
15481861 AAAAT
1 AAAAT
15481866 ATGTTCGTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.63, C:0.00, G:0.18, T:0.19
Consensus pattern (26 bp):
AAAATGATTAAAAATGGTAAAAGAAG
Found at i:15481912 original size:18 final size:16
Alignment explanation
Indices: 15481879--15481913 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
15481869 TTCGTTTATA
15481879 ATTTTAAAAATTAATT
1 ATTTTAAAAATTAATT
15481895 ATTTTAAATAATTTAATT
1 ATTTTAAA-AA-TTAATT
15481913 A
1 A
15481914 AAGTTAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
17 2 0.12
18 7 0.41
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTTAAAAATTAATT
Found at i:15482099 original size:2 final size:2
Alignment explanation
Indices: 15482092--15482136 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
15482082 GATCAAAACC
15482092 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15482134 TA T
1 TA T
15482137 GCAGTTTTCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:15485023 original size:26 final size:26
Alignment explanation
Indices: 15484994--15485075 Score: 164
Period size: 26 Copynumber: 3.2 Consensus size: 26
15484984 TGATAAAAAT
15484994 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15485020 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15485046 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
15485072 TGAT
1 TGAT
15485076 GGGCATTCAA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 56 1.00
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:15486781 original size:54 final size:54
Alignment explanation
Indices: 15486671--15486815 Score: 195
Period size: 54 Copynumber: 2.7 Consensus size: 54
15486661 TGGAGGAAGC
*
15486671 GTCCTGGTGGCTATGCCACAATTTATCTAATCTGGTGGCTCTGCCACATATATCT
1 GTCCTGGTGGCTATGCCACAA-TTATCTAATCTGGTGGCTCTACCACATATATCT
* *
15486726 GTCCTGGTGGCTATGCCACAATTATTTGAT-TCGGTGGCTCTACCACATATATCT
1 GTCCTGGTGGCTATGCCACAATTATCTAATCT-GGTGGCTCTACCACATATATCT
* * *
15486780 GTTCTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 GTCCTGGTGGCTATGCCACAATTATCT-AATCTGGTG
15486816 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
53 5 0.06
54 53 0.66
55 22 0.28
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (54 bp):
GTCCTGGTGGCTATGCCACAATTATCTAATCTGGTGGCTCTACCACATATATCT
Found at i:15486812 original size:27 final size:27
Alignment explanation
Indices: 15486674--15486815 Score: 141
Period size: 27 Copynumber: 5.2 Consensus size: 27
15486664 AGGAAGCGTC
* *
15486674 CTGGTGGCTATGCCACAATTTATCT-AAT
1 CTGGTGGCTCTGCCACAA--TATCTGTAT
*
15486702 CTGGTGGCTCTGCCACATATATCTGT-C
1 CTGGTGGCTCTGCCACA-ATATCTGTAT
* *
15486729 CTGGTGGCTATGCCACAATTATTTG-AT
1 CTGGTGGCTCTGCCACAA-TATCTGTAT
*
15486756 -TCGGTGGCTCTACCACATATATCTGT-T
1 CT-GGTGGCTCTGCCACA-ATATCTGTAT
15486783 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTCTGCCACAATATCTGTAT
15486810 CTGGTG
1 CTGGTG
15486816 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 10, Indels: 19
0.77 0.08 0.15
Matches are distributed among these distances:
26 10 0.11
27 66 0.69
28 18 0.19
29 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATATCTGTAT
Found at i:15491039 original size:31 final size:31
Alignment explanation
Indices: 15491003--15491062 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
15490993 CATGGGTTCC
* * *
15491003 CAATTCGAAAAGTATAGAGACTAAAATTGAT
1 CAATTCGAAAAATAAAAAGACTAAAATTGAT
15491034 CAATTCGAAAAATAAAAAGACTAAAATTG
1 CAATTCGAAAAATAAAAAGACTAAAATTG
15491063 GTAAAATTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.53, C:0.10, G:0.13, T:0.23
Consensus pattern (31 bp):
CAATTCGAAAAATAAAAAGACTAAAATTGAT
Found at i:15491557 original size:181 final size:181
Alignment explanation
Indices: 15491246--15491612 Score: 716
Period size: 181 Copynumber: 2.0 Consensus size: 181
15491236 CTCTTGGACG
*
15491246 AAAGTCTCCCCTAATCTTGACTTATCATTCCTTTAAATAGGCAGGGGATGCCATGCAAAAATAGC
1 AAAGTCGCCCCTAATCTTGACTTATCATTCCTTTAAATAGGCAGGGGATGCCATGCAAAAATAGC
15491311 GAGGTGATGGTTAGCATGGTGGGGGCCACGTCCCACCAATTATTTTCTCCTTGTTTTGACTGACA
66 GAGGTGATGGTTAGCATGGTGGGGGCCACGTCCCACCAATTATTTTCTCCTTGTTTTGACTGACA
15491376 TTTTTTAATTTCACTTTTTTTATTAATATTAATAACAACTTTAAATTTTTT
131 TTTTTTAATTTCACTTTTTTTATTAATATTAATAACAACTTTAAATTTTTT
15491427 AAAGTCGCCCCTAATCTTGACTTATCATTCCTTTAAATAGGCAGGGGATGCCATGCAAAAATAGC
1 AAAGTCGCCCCTAATCTTGACTTATCATTCCTTTAAATAGGCAGGGGATGCCATGCAAAAATAGC
15491492 GAGGTGATGGTTAGCATGGTGGGGGCCACGTCCCACCAATTATTTTCTCCTTGTTTTGACTGACA
66 GAGGTGATGGTTAGCATGGTGGGGGCCACGTCCCACCAATTATTTTCTCCTTGTTTTGACTGACA
15491557 TTTTTTAATTTCACTTTTTTTATTAATATTAATAACAACTTTAAATTTTTT
131 TTTTTTAATTTCACTTTTTTTATTAATATTAATAACAACTTTAAATTTTTT
*
15491608 TAAGT
1 AAAGT
15491613 AATATATAAT
Statistics
Matches: 184, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
181 184 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (181 bp):
AAAGTCGCCCCTAATCTTGACTTATCATTCCTTTAAATAGGCAGGGGATGCCATGCAAAAATAGC
GAGGTGATGGTTAGCATGGTGGGGGCCACGTCCCACCAATTATTTTCTCCTTGTTTTGACTGACA
TTTTTTAATTTCACTTTTTTTATTAATATTAATAACAACTTTAAATTTTTT
Found at i:15491884 original size:96 final size:96
Alignment explanation
Indices: 15491756--15492235 Score: 942
Period size: 96 Copynumber: 5.0 Consensus size: 96
15491746 ATGCCATGTG
* *
15491756 CATGGAATGATAGGCTCACCCACTCCTACGTACACACTTATGCTGGAATGGAAACGGATCGGTGT
1 CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
15491821 ATGCGTGGGTGTATATATAAGACTAAGCATA
66 ATGCGTGGGTGTATATATAAGACTAAGCATA
15491852 CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
1 CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
15491917 ATGCGTGGGTGTATATATAAGACTAAGCATA
66 ATGCGTGGGTGTATATATAAGACTAAGCATA
15491948 CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
1 CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
15492013 ATGCGTGGGTGTATATATAAGACTAAGCATA
66 ATGCGTGGGTGTATATATAAGACTAAGCATA
15492044 CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
1 CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
15492109 ATGCGTGGGTGTATATATAAGACTAAGCATA
66 ATGCGTGGGTGTATATATAAGACTAAGCATA
15492140 CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
1 CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
15492205 ATGCGTGGGTGTATATATAAGACTAAGCATA
66 ATGCGTGGGTGTATATATAAGACTAAGCATA
15492236 TATGATAGTA
Statistics
Matches: 382, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 382 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (96 bp):
CATGGAATGATAGGCTCACGCACTCCTACGTACACACTCATGCTGGAATGGAAACGGATCGGTGT
ATGCGTGGGTGTATATATAAGACTAAGCATA
Found at i:15492648 original size:30 final size:30
Alignment explanation
Indices: 15492614--15492676 Score: 117
Period size: 30 Copynumber: 2.1 Consensus size: 30
15492604 ACTTATTTTA
15492614 TTGTTAATTTTGTTATTATTTTAAAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
*
15492644 TTGTTAATTTTGTTATTATTTTAGAGACAT
1 TTGTTAATTTTGTTATTATTTTAAAGACAT
15492674 TTG
1 TTG
15492677 CTTGTTAAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGACAT
Found at i:15492819 original size:11 final size:12
Alignment explanation
Indices: 15492799--15492831 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
15492789 TTTATTTTTT
*
15492799 AAAATTATAT-A
1 AAAATAATATAA
15492810 AAAATAATATAA
1 AAAATAATATAA
15492822 AAAATAATAT
1 AAAATAATAT
15492832 GGGCGAGTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (12 bp):
AAAATAATATAA
Found at i:15498082 original size:22 final size:22
Alignment explanation
Indices: 15498043--15498086 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15498033 GCTTGTATGG
**
15498043 GTTCAGCACTTCGTTGCTCTCT
1 GTTCAGCACTTCAATGCTCTCT
*
15498065 GTTCAGCACTTTAATGCTCTCT
1 GTTCAGCACTTCAATGCTCTCT
15498087 ACTTAGCACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.14, C:0.30, G:0.16, T:0.41
Consensus pattern (22 bp):
GTTCAGCACTTCAATGCTCTCT
Found at i:15506473 original size:20 final size:19
Alignment explanation
Indices: 15506448--15506498 Score: 70
Period size: 17 Copynumber: 2.7 Consensus size: 19
15506438 GTAATGAATA
15506448 TGTTCACCAAGAGATACAAT
1 TGTTCA-CAAGAGATACAAT
15506468 TGTTCA-AA-AGATACAAT
1 TGTTCACAAGAGATACAAT
15506485 TGTTCATCAAGAGA
1 TGTTCA-CAAGAGA
15506499 CAGAACTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
17 15 0.54
18 2 0.07
19 2 0.07
20 9 0.32
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (19 bp):
TGTTCACAAGAGATACAAT
Found at i:15508533 original size:20 final size:21
Alignment explanation
Indices: 15508508--15508546 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
15508498 TGAAAAATAT
15508508 GATTTTTTAA-ATTTTTTACA
1 GATTTTTTAATATTTTTTACA
15508528 GATTTTTTAATATTTTTTA
1 GATTTTTTAATATTTTTTA
15508547 ATCTAAGATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (21 bp):
GATTTTTTAATATTTTTTACA
Found at i:15508542 original size:10 final size:10
Alignment explanation
Indices: 15508509--15508548 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
15508499 GAAAAATATG
15508509 ATTTTTTAA-
1 ATTTTTTAAT
*
15508518 ATTTTTTACAG
1 ATTTTTTA-AT
15508529 ATTTTTTAAT
1 ATTTTTTAAT
15508539 ATTTTTTAAT
1 ATTTTTTAAT
15508549 CTAAGATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
9 8 0.29
10 12 0.43
11 8 0.29
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (10 bp):
ATTTTTTAAT
Found at i:15513379 original size:15 final size:16
Alignment explanation
Indices: 15513359--15513390 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
15513349 GTATTTGATC
15513359 ATTTATATTT-TTTAA
1 ATTTATATTTATTTAA
15513374 ATTTATATTTATTTAA
1 ATTTATATTTATTTAA
15513390 A
1 A
15513391 AATTAATATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTATATTTATTTAA
Found at i:15515764 original size:44 final size:43
Alignment explanation
Indices: 15515670--15515769 Score: 128
Period size: 44 Copynumber: 2.3 Consensus size: 43
15515660 AAAAAAAAGT
15515670 CGCTAAAAGTCATGACATTTAGCGACGCTTTCCCCACAAACAC
1 CGCTAAAAGTCATGACATTTAGCGACGCTTTCCCCACAAACAC
* * * * **
15515713 CGTTAAAAGTTCCTGACCTTTAGCGACGCTTTTCCCACAAATGC
1 CGCTAAAAG-TCATGACATTTAGCGACGCTTTCCCCACAAACAC
*
15515757 CGCTAAAAATCAT
1 CGCTAAAAGTCAT
15515770 AACCTTTTAA
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
43 11 0.23
44 36 0.77
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.25
Consensus pattern (43 bp):
CGCTAAAAGTCATGACATTTAGCGACGCTTTCCCCACAAACAC
Found at i:15523331 original size:3 final size:3
Alignment explanation
Indices: 15523323--15523442 Score: 240
Period size: 3 Copynumber: 40.0 Consensus size: 3
15523313 AGGGAAGACC
15523323 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
15523371 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
15523419 TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT
15523443 ATCAGAGTTT
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 117 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:15524199 original size:20 final size:22
Alignment explanation
Indices: 15524170--15524211 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
15524160 AATAAAATTG
*
15524170 AAATATTAAA-TA-ATTTATTA
1 AAATAATAAATTATATTTATTA
15524190 AAATAATAAATTATATTTATTA
1 AAATAATAAATTATATTTATTA
15524212 TATGAATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 2 0.11
22 8 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATAATAAATTATATTTATTA
Found at i:15526167 original size:12 final size:12
Alignment explanation
Indices: 15526150--15526180 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
15526140 GCCACCCTAT
15526150 CCACCATCGCCA
1 CCACCATCGCCA
15526162 CCACCATCGCCA
1 CCACCATCGCCA
15526174 CCACCAT
1 CCACCAT
15526181 ATCATATCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.26, C:0.58, G:0.06, T:0.10
Consensus pattern (12 bp):
CCACCATCGCCA
Found at i:15526258 original size:23 final size:22
Alignment explanation
Indices: 15526231--15526308 Score: 68
Period size: 22 Copynumber: 3.3 Consensus size: 22
15526221 AACAAAAAAA
15526231 GGGTTTTTTGTTTTAAAATTTTT
1 GGGTTTTTTGTTTT-AAATTTTT
* *
15526254 GGG-TTTTTGTTATTTAATTTCTGG
1 GGGTTTTTTGTT-TTAAATTT-T-T
*
15526278 GGGATTTTTTGTTTTTAAATTTCT
1 GGG-TTTTTTG-TTTTAAATTTTT
15526302 GGGTTTT
1 GGGTTTT
15526309 CAAGTGTCTG
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
22 13 0.30
23 10 0.23
24 6 0.14
26 13 0.30
27 2 0.05
ACGTcount: A:0.14, C:0.03, G:0.22, T:0.62
Consensus pattern (22 bp):
GGGTTTTTTGTTTTAAATTTTT
Found at i:15526298 original size:26 final size:25
Alignment explanation
Indices: 15526231--15526304 Score: 84
Period size: 26 Copynumber: 3.0 Consensus size: 25
15526221 AACAAAAAAA
* *
15526231 GGGTTTTTTGTTTTAAAATTT-T-T
1 GGGTTTTTTGTTTTTAAATTTCTGG
15526254 GGG-TTTTTGTTATTT-AATTTCTGG
1 GGGTTTTTTGTT-TTTAAATTTCTGG
15526278 GGGATTTTTTGTTTTTAAATTTCTGG
1 GGG-TTTTTTGTTTTTAAATTTCTGG
15526304 G
1 G
15526305 TTTTCAAGTG
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
22 13 0.30
23 6 0.14
24 3 0.07
25 3 0.07
26 18 0.42
ACGTcount: A:0.15, C:0.03, G:0.23, T:0.59
Consensus pattern (25 bp):
GGGTTTTTTGTTTTTAAATTTCTGG
Found at i:15526870 original size:23 final size:23
Alignment explanation
Indices: 15526844--15526887 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
15526834 TGTGGAAAGA
15526844 AGAAATAATGAGGATGAAGATCG
1 AGAAATAATGAGGATGAAGATCG
*
15526867 AGAAATAATGGGGATGAAGAT
1 AGAAATAATGAGGATGAAGAT
15526888 TGGAGACGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.48, C:0.02, G:0.32, T:0.18
Consensus pattern (23 bp):
AGAAATAATGAGGATGAAGATCG
Found at i:15527045 original size:30 final size:30
Alignment explanation
Indices: 15526971--15527046 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 30
15526961 ATATGCATTT
* *
15526971 AATAATCTTAATAATCTTATAAAAATAAAA
1 AATAATTTTAATAATTTTATAAAAATAAAA
15527001 AAT-ATTTT--TAATTTTATAAAAATAAAA
1 AATAATTTTAATAATTTTATAAAAATAAAA
15527028 AATAATTTTAATAATTTTA
1 AATAATTTTAATAATTTTA
15527047 AACTCATTTG
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 21 0.51
28 5 0.12
29 4 0.10
30 11 0.27
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAATTTTAATAATTTTATAAAAATAAAA
Found at i:15528223 original size:30 final size:29
Alignment explanation
Indices: 15528184--15528240 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
15528174 AGGTGGGATG
15528184 GGGAGGGAGT-AAAAGTTTTAGGGGGAAAGT
1 GGGAGGGAGTAAAAAG-TTT-GGGGGAAAGT
*
15528214 GGGATGGAGTAAAAAGTTTGGGGGAAA
1 GGGAGGGAGTAAAAAGTTTGGGGGAAA
15528241 ATAAAAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 8 0.32
30 12 0.48
31 5 0.20
ACGTcount: A:0.35, C:0.00, G:0.46, T:0.19
Consensus pattern (29 bp):
GGGAGGGAGTAAAAAGTTTGGGGGAAAGT
Found at i:15531748 original size:22 final size:23
Alignment explanation
Indices: 15531720--15531763 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15531710 CTTGTATTTT
15531720 TAAATTA-TT-AAAGTAAAAGTAG
1 TAAATTACTTCAAA-TAAAAGTAG
15531742 TAAATTACTTCAAATAAAAGTA
1 TAAATTACTTCAAATAAAAGTA
15531764 AAAAGATTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
22 7 0.35
23 10 0.50
24 3 0.15
ACGTcount: A:0.55, C:0.05, G:0.09, T:0.32
Consensus pattern (23 bp):
TAAATTACTTCAAATAAAAGTAG
Found at i:15540045 original size:22 final size:22
Alignment explanation
Indices: 15540005--15540065 Score: 59
Period size: 22 Copynumber: 2.5 Consensus size: 22
15539995 TTTATGAATT
*
15540005 AATTTTTAATAATATAAATAAATA
1 AATTTTT--TAATAAAAATAAATA
*
15540029 AATTTTTTAATAAAAATAATTA
1 AATTTTTTAATAAAAATAAATA
15540051 ATTTATTTTTTAATA
1 A---ATTTTTTAATA
15540066 TAATGTGTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
22 14 0.44
24 7 0.22
25 11 0.34
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTTTTTAATAAAAATAAATA
Found at i:15541693 original size:117 final size:117
Alignment explanation
Indices: 15541531--15541775 Score: 404
Period size: 117 Copynumber: 2.1 Consensus size: 117
15541521 TCTAAAAAAT
*
15541531 TAATTAGTACATTTTCTAAATATCTTCATTTTCAACATCTTAAATTAATAGGTT-TAATCAATTT
1 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATCTTAAATTAATA--TTATAATCAATTT
15541595 AGTCCAAAAAATTAGAGTCAACATCTTAAAAAAGAG-AAAAATTAATTTTGTTA
64 AGTCCAAAAAATTAGAGTCAACATCTTAAAAAAGAGAAAAAATTAATTTTGTTA
* *
15541648 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATCTTAAATTATTATTATAATCAATTTTG
1 TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATCTTAAATTAATATTATAATCAATTTAG
* *
15541713 TCCAAAAAATTAGAGTCAACATCTTAAAAAAGGGAAAAAATTAATTTTGTTG
66 TCCAAAAAATTAGAGTCAACATCTTAAAAAAGAGAAAAAATTAATTTTGTTA
*
15541765 TAATTAATACA
1 TAATTAGTACA
15541776 ATAAATAGGC
Statistics
Matches: 120, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
115 2 0.02
116 44 0.37
117 74 0.62
ACGTcount: A:0.42, C:0.11, G:0.07, T:0.39
Consensus pattern (117 bp):
TAATTAGTACATTTTCCAAATATCTTCATTTTCAACATCTTAAATTAATATTATAATCAATTTAG
TCCAAAAAATTAGAGTCAACATCTTAAAAAAGAGAAAAAATTAATTTTGTTA
Found at i:15543707 original size:6 final size:6
Alignment explanation
Indices: 15543696--15543730 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
15543686 GGAATACACC
*
15543696 GTAACA GTAACA ATAACA GTAACA GTAACA GTAAC
1 GTAACA GTAACA GTAACA GTAACA GTAACA GTAAC
15543731 GGTACACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.51, C:0.17, G:0.14, T:0.17
Consensus pattern (6 bp):
GTAACA
Found at i:15544662 original size:13 final size:13
Alignment explanation
Indices: 15544646--15544683 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
15544636 TTATTTTACT
15544646 TTATATTATTATA
1 TTATATTATTATA
*
15544659 TTATATTTTTA-A
1 TTATATTATTATA
15544671 TTATAATTATTAT
1 TTAT-ATTATTAT
15544684 TTCTTAAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
12 5 0.24
13 16 0.76
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATATTATTATA
Found at i:15547680 original size:21 final size:21
Alignment explanation
Indices: 15547656--15547695 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15547646 CTATAAAAAA
*
15547656 ATATGTTGAATAATAATACTT
1 ATATCTTGAATAATAATACTT
*
15547677 ATATCTTTAATAATAATAC
1 ATATCTTGAATAATAATAC
15547696 AATAATAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.45, C:0.07, G:0.05, T:0.42
Consensus pattern (21 bp):
ATATCTTGAATAATAATACTT
Found at i:15552134 original size:19 final size:19
Alignment explanation
Indices: 15552110--15552148 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
15552100 ATAATGAGTT
*
15552110 ATGGTTAATATTGAGGGTA
1 ATGGTTAATATTAAGGGTA
15552129 ATGGTTAATATTAAGGGTA
1 ATGGTTAATATTAAGGGTA
15552148 A
1 A
15552149 ATCAATGAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (19 bp):
ATGGTTAATATTAAGGGTA
Found at i:15559743 original size:41 final size:41
Alignment explanation
Indices: 15559686--15559766 Score: 144
Period size: 41 Copynumber: 2.0 Consensus size: 41
15559676 AAAATAAGAG
* *
15559686 ATAGGATATATTTTTCCAGCACATTTAATCAATGTTTGAGT
1 ATAGGATATATTTTTCCAACACATTTAATCAAAGTTTGAGT
15559727 ATAGGATATATTTTTCCAACACATTTAATCAAAGTTTGAG
1 ATAGGATATATTTTTCCAACACATTTAATCAAAGTTTGAG
15559767 ATTCATTAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.35, C:0.12, G:0.14, T:0.40
Consensus pattern (41 bp):
ATAGGATATATTTTTCCAACACATTTAATCAAAGTTTGAGT
Found at i:15562803 original size:27 final size:25
Alignment explanation
Indices: 15562754--15562803 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
15562744 TAAGATAACA
* *
15562754 TATTATAATATATTTTAACTTTAAT
1 TATTATAATATATTATAAATTTAAT
15562779 TATTATAATATATATAATAAATTTA
1 TATTATAATATAT-T-ATAAATTTA
15562804 TACATAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 13 0.62
26 1 0.05
27 7 0.33
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (25 bp):
TATTATAATATATTATAAATTTAAT
Found at i:15564793 original size:12 final size:12
Alignment explanation
Indices: 15564776--15564800 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15564766 ATTTCAAAAG
15564776 TTTAATTTATTT
1 TTTAATTTATTT
15564788 TTTAATTTATTT
1 TTTAATTTATTT
15564800 T
1 T
15564801 ATTTTATTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTAATTTATTT
Found at i:15564801 original size:17 final size:18
Alignment explanation
Indices: 15564776--15564810 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
15564766 ATTTCAAAAG
15564776 TTTAATTTATTTT-TTAA
1 TTTAATTTATTTTATTAA
*
15564793 TTTATTTTATTTTATTAA
1 TTTAATTTATTTTATTAA
15564811 AATTTTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTAATTTATTTTATTAA
Found at i:15567387 original size:30 final size:30
Alignment explanation
Indices: 15567328--15567387 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
15567318 TATTTTATTA
* *
15567328 TTAATTTTGTTATTATTTTAAAGGCATTTG
1 TTAATTTTATTATTATTCTAAAGGCATTTG
* *
15567358 TTAATTTTATTATTATTCTACAGGTATTTG
1 TTAATTTTATTATTATTCTAAAGGCATTTG
15567388 CTTGTTAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.27, C:0.05, G:0.12, T:0.57
Consensus pattern (30 bp):
TTAATTTTATTATTATTCTAAAGGCATTTG
Found at i:15568514 original size:26 final size:26
Alignment explanation
Indices: 15568468--15568520 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
15568458 TCAAACATGC
*
15568468 ATTTAGGTCAATTTAACCCTAGGGGT
1 ATTTAGGTCAATTTAACCCTAAGGGT
* *
15568494 ATTTCGGT-AATTTATCTCCTAAGGGT
1 ATTTAGGTCAATTTAAC-CCTAAGGGT
15568520 A
1 A
15568521 AAACTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAGGTCAATTTAACCCTAAGGGT
Found at i:15570045 original size:32 final size:32
Alignment explanation
Indices: 15570008--15570072 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
15569998 AATGCTTACC
*
15570008 ATGCCCATCATCTATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
15570040 ATGCCCATCATCCATTAACTATTAAAATGCTA
1 ATGCCCATCATCCATTAACTATTAAAATGCTA
15570072 A
1 A
15570073 AATGCATACA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.32
Consensus pattern (32 bp):
ATGCCCATCATCCATTAACTATTAAAATGCTA
Found at i:15573248 original size:43 final size:42
Alignment explanation
Indices: 15573198--15573315 Score: 139
Period size: 43 Copynumber: 2.8 Consensus size: 42
15573188 AGATGTGATT
*
15573198 ACATGTAAGACCATGTCTGGGACATTGGCATTGCAT-TGAGATT
1 ACATGTAAGACCATGTCTGGGACA-TGGCATTG-ATATGAGATA
** * *
15573241 ATGTGTAAGACCATGTCTGGGACAGTGGCATCGATATGTGATA
1 ACATGTAAGACCATGTCTGGGACA-TGGCATTGATATGAGATA
* *
15573284 ACATGTAAGACCATATCTGGGATATGGCATTG
1 ACATGTAAGACCATGTCTGGGACATGGCATTG
15573316 TACGAGCATA
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
42 9 0.14
43 54 0.86
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (42 bp):
ACATGTAAGACCATGTCTGGGACATGGCATTGATATGAGATA
Found at i:15574012 original size:23 final size:24
Alignment explanation
Indices: 15573986--15574037 Score: 63
Period size: 23 Copynumber: 2.2 Consensus size: 24
15573976 CTGATTTGGT
15573986 TTTGATATGATGAAAT-GGT-ATAA
1 TTTGATAT-ATGAAATAGGTGATAA
*
15574009 TTTGATGTATGAAATAGGTGATAA
1 TTTGATATATGAAATAGGTGATAA
*
15574033 GTTGA
1 TTTGA
15574038 AAGGTAAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 7 0.28
23 10 0.40
24 8 0.32
ACGTcount: A:0.37, C:0.00, G:0.25, T:0.38
Consensus pattern (24 bp):
TTTGATATATGAAATAGGTGATAA
Found at i:15576557 original size:54 final size:54
Alignment explanation
Indices: 15576475--15576582 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
15576465 TTCTTCCTTG
15576475 GCCGAACCTTGTATGTCCACAATAGCTAGGGTTTTTTCAAAGCTTTCAAGCTCA
1 GCCGAACCTTGTATGTCCACAATAGCTAGGGTTTTTTCAAAGCTTTCAAGCTCA
*
15576529 GCCGAACCTTGTATGTCCACTATAGCTAGGGTTTTTTCAAAGCTTTCAAGCTCA
1 GCCGAACCTTGTATGTCCACAATAGCTAGGGTTTTTTCAAAGCTTTCAAGCTCA
15576583 ATAGTAAGTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (54 bp):
GCCGAACCTTGTATGTCCACAATAGCTAGGGTTTTTTCAAAGCTTTCAAGCTCA
Found at i:15580115 original size:14 final size:14
Alignment explanation
Indices: 15580096--15580126 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
15580086 TAAGATAGAC
15580096 GAAGAATAAAATAA
1 GAAGAATAAAATAA
15580110 GAAGAATAAAATAA
1 GAAGAATAAAATAA
15580124 GAA
1 GAA
15580127 CAAACCACAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.13
Consensus pattern (14 bp):
GAAGAATAAAATAA
Found at i:15580370 original size:19 final size:19
Alignment explanation
Indices: 15580336--15580414 Score: 117
Period size: 19 Copynumber: 4.2 Consensus size: 19
15580326 AGATTACAAG
15580336 ATCATATCTTTAAGATTGCAT
1 ATCATATC--TAAGATTGCAT
15580357 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
15580374 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
15580393 ATCATATCTAAGATTTCAT
1 ATCATATCTAAGATTGCAT
15580412 ATC
1 ATC
15580415 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
17 17 0.31
19 30 0.55
21 8 0.15
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:15580424 original size:36 final size:37
Alignment explanation
Indices: 15580336--15580407 Score: 128
Period size: 36 Copynumber: 1.9 Consensus size: 37
15580326 AGATTACAAG
15580336 ATCATATCTTTAAGATTGCATATCATATCTAAGATTGT
1 ATCATATC-TTAAGATTGCATATCATATCTAAGATTGT
15580374 ATCATATC-TAAGATTGCATATCATATCTAAGATT
1 ATCATATCTTAAGATTGCATATCATATCTAAGATT
15580408 TCATATCCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
36 26 0.76
38 8 0.24
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (37 bp):
ATCATATCTTAAGATTGCATATCATATCTAAGATTGT
Found at i:15581051 original size:44 final size:44
Alignment explanation
Indices: 15580996--15581702 Score: 627
Period size: 44 Copynumber: 16.1 Consensus size: 44
15580986 GAGATGCTAG
* * *
15580996 ATCTGTTATCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
* *
15581040 ATCTGTTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** ** * * ** * *
15581082 ATGCTGAAATCTTCGATCTGCTTTGCTATAAGCATAGAAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
* * *
15581128 ATCTTCTATCTTCGATTTGTTCCCTATAAACACAGTGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
* * *
15581172 ATCTACTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCAT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
15581216 A-CTGAAATCTTCGATCTGCTTCGCTGTAATCACAGGAATGTCAG
1 ATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
*
15581260 ATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
15581304 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * * *
15581346 ATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGATGCCAA
*
15581392 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGTGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
* * *
15581436 ATATGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCCAT
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** ** * * * *
15581480 A-CTGAAATCTTCGATCTGCTTCGTTGTAAGCACA-GGAGTGTCAG
1 ATCTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCAA
15581524 ATCTGCTATCTTCGATCTGTTCCCTAT-AACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
*
15581567 ATCTGCTATCTTC-AACTTGTTCCCTATAAACACAGGGATGCC--
1 ATCTGCTATCTTCGATC-TGTTCCCTATAAACACAGGGATGCCAA
** * * * * *
15581609 ATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACA-GGAGTGTCAG
1 AT-CTGCTATCTTCGATCTG-TTCCCTATAAACACAGGGA-TGCCAA
*
15581655 ATCTGCTATCTTCGATCTATTCCCTATAAACACAGGGATGCCAA
1 ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
15581699 ATCT
1 ATCT
15581703 CGTTTCTCTG
Statistics
Matches: 526, Mismatches: 106, Indels: 62
0.76 0.15 0.09
Matches are distributed among these distances:
42 8 0.02
43 96 0.18
44 342 0.65
45 74 0.14
46 6 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (44 bp):
ATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAA
Found at i:15581144 original size:132 final size:132
Alignment explanation
Indices: 15580994--15581702 Score: 1204
Period size: 132 Copynumber: 5.4 Consensus size: 132
15580984 TGGAGATGCT
* * * *
15580994 AGATCTGTTATCTTCGATTTGTTCCCTGTAAACACAGGGATGCCAAATCTGTTATCTTCAACTTG
1 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTG
* * * *
15581059 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTTGCTATAAGCATAGAAATG
66 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATG
15581124 TC
131 TC
* * * *
15581126 AGATCTTCTATCTTCGATTTGTTCCCTATAAACACAGTGATGCCAAATCTACTATCTTCAACTTG
1 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTG
* *
15581191 TTCCCTATAAACACAGGGATGCCATACTGAAATCTTCGATCTGCTTCGCTGTAATCACAGGAATG
66 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATG
15581256 TC
131 TC
*
15581258 AGATCTGCTATCTTCGATTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTG
1 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTG
*
15581323 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATG
66 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATG
15581388 TC
131 TC
* *
15581390 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGTGATGCCAAATATGCTATCTTCAACTTG
1 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTG
* * *
15581455 TTCCCTATAAACACAGGGATGCCATACTGAAATCTTCGATCTGCTTCGTTGTAAGCACAGGAGTG
66 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATG
15581520 TC
131 TC
15581522 AGATCTGCTATCTTCGATCTGTTCCCTAT-AACACAGGGATGCCAAATCTGCTATCTTCAACTTG
1 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTG
*
15581586 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAGTG
66 TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATG
15581651 TC
131 TC
*
15581653 AGATCTGCTATCTTCGATCTATTCCCTATAAACACAGGGATGCCAAATCT
1 AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCT
15581703 CGTTTCTCTG
Statistics
Matches: 546, Mismatches: 30, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
131 126 0.23
132 420 0.77
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (132 bp):
AGATCTGCTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTG
TTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATCTGCTTCGCTGTAAGCACAGGAATG
TC
Done.