Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 76 of 186
Found at i:24421681 original size:72 final size:72
Alignment explanation
Indices: 24421549--24421736 Score: 234
Period size: 72 Copynumber: 2.6 Consensus size: 72
24421539 TATGTAATGT
* * ** *
24421549 GGGTCCGGGTGCTAACTTTGTGTATAAACCCGTGAGTAACTCGCTGAGCGAGCTTATCATGTTAA
1 GGGTCCGGGTGCTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAGCTTATCATGATAA
24421614 TGCTTTG
66 TGCTTTG
* * * *
24421621 GGGTCCGGGTACTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGTG-GGTATTTCATGATA
1 GGGTCCGGGTGCTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAGCT-TATCATGATA
24421685 ATGCTTTG
65 ATGCTTTG
* * * * *
24421693 GGGTCCGGGTGCTGACTTTATGTACAGACCAGTAAGTAGCTCAA
1 GGGTCCGGGTGCTGACTTTGTGTATAAACCCGTGAGTAGCTCAA
24421737 ATGTGGGCAT
Statistics
Matches: 100, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
71 2 0.02
72 98 0.98
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (72 bp):
GGGTCCGGGTGCTGACTTTGTGTATAAACCCGTGAGTAGCTCAATGAGCGAGCTTATCATGATAA
TGCTTTG
Found at i:24423842 original size:27 final size:27
Alignment explanation
Indices: 24423812--24423919 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 27
24423802 AATCTCATAT
* *
24423812 CTGTAGGCTAGCATTACTGAAATACCC
1 CTGTAGGATAGAATTACTGAAATACCC
*
24423839 CTGTAGGGTAGAATTACTGAAATACCC
1 CTGTAGGATAGAATTACTGAAATACCC
* * * *
24423866 TTGTAGGTTAGAATTAATGAAATGCCC
1 CTGTAGGATAGAATTACTGAAATACCC
* **
24423893 CTATAGGATAGAATTACCAAAATACCC
1 CTGTAGGATAGAATTACTGAAATACCC
24423920 TTGGTTTACA
Statistics
Matches: 68, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 68 1.00
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.27
Consensus pattern (27 bp):
CTGTAGGATAGAATTACTGAAATACCC
Found at i:24423905 original size:54 final size:54
Alignment explanation
Indices: 24423813--24423922 Score: 148
Period size: 54 Copynumber: 2.0 Consensus size: 54
24423803 ATCTCATATC
* * * * **
24423813 TGTAGGCTAGCATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCT
1 TGTAGGCTAGAATTAATGAAATACCCCTATAGGATAGAATTACCAAAATACCCT
* *
24423867 TGTAGGTTAGAATTAATGAAATGCCCCTATAGGATAGAATTACCAAAATACCCT
1 TGTAGGCTAGAATTAATGAAATACCCCTATAGGATAGAATTACCAAAATACCCT
24423921 TG
1 TG
24423923 GTTTACAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28
Consensus pattern (54 bp):
TGTAGGCTAGAATTAATGAAATACCCCTATAGGATAGAATTACCAAAATACCCT
Found at i:24423935 original size:54 final size:51
Alignment explanation
Indices: 24423824--24423999 Score: 145
Period size: 54 Copynumber: 3.3 Consensus size: 51
24423814 GTAGGCTAGC
* ** * *
24423824 ATTACTGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTTGTAGGTTAGA
1 ATTACTGAAATACCCCTATA-GGTAGAATTACCAAAATACCCTTG--GTTTAAA
* *
24423878 ATTAATGAAATGCCCCTATAGGATAGAATTACCAAAATACCCTTGGTTTACAAA
1 ATTACTGAAATACCCCTATAGG-TAGAATTACCAAAATACCCTTGGTTT--AAA
** ** *
24423932 ATTACCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCTTGGTTTGTAAA
1 ATTACTGAAATACCCCTA-TAGGTAGAATTACCAAAATACCCTTGG-TT-TAAA
**
24423986 ATTACCAAAATACC
1 ATTACTGAAATACC
24424000 GCTGATTTGT
Statistics
Matches: 102, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
52 3 0.03
53 2 0.02
54 92 0.90
55 4 0.04
56 1 0.01
ACGTcount: A:0.39, C:0.19, G:0.13, T:0.29
Consensus pattern (51 bp):
ATTACTGAAATACCCCTATAGGTAGAATTACCAAAATACCCTTGGTTTAAA
Found at i:24424009 original size:54 final size:54
Alignment explanation
Indices: 24423904--24424061 Score: 219
Period size: 54 Copynumber: 2.9 Consensus size: 54
24423894 TATAGGATAG
**
24423904 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGA-TTTGTAA
* *
24423958 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCGCTGATTTGTGA
1 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTAA
* * ** *
24424012 AATTACCGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGATTT
1 AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTT
24424062 ACAAAACTAC
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
54 92 0.99
55 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCCTTGGTTTGTAAAATTACCAAAATACCCCTGATTTGTAA
Found at i:24424072 original size:27 final size:27
Alignment explanation
Indices: 24423904--24424061 Score: 185
Period size: 27 Copynumber: 5.9 Consensus size: 27
24423894 TATAGGATAG
* * **
24423904 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCCTGATTTGTAA
24423931 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTGA-TTTGTAA
* *
24423958 AATTACCAAAATACCCTTGGTTTGTAA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
24423985 AATTACCAAAATACCGCTGATTTGTGA
1 AATTACCAAAATACCCCTGATTTGTAA
* *
24424012 AATTACCGAAATA-CCCTCGACTTGTAA
1 AATTACCAAAATACCCCT-GATTTGTAA
*
24424039 AATTACCAAAGTACCCCTGATTT
1 AATTACCAAAATACCCCTGATTT
24424062 ACAAAACTAC
Statistics
Matches: 110, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.03
27 103 0.94
28 4 0.04
ACGTcount: A:0.38, C:0.22, G:0.10, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGATTTGTAA
Found at i:24424342 original size:27 final size:27
Alignment explanation
Indices: 24424093--24424341 Score: 363
Period size: 27 Copynumber: 9.2 Consensus size: 27
24424083 CGATTTACAA
*
24424093 AATTATTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
24424120 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
24424147 AGTTACTGAAACACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
24424174 AGTTACTGAAACACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
24424201 AATTACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
24424228 AATTACTGAAATACCCTTGTAGAGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
24424255 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
24424282 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
24424309 AATTACCGAGATACCCTTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
24424336 AATTAC
1 AATTAC
24424342 CATTTTGCCC
Statistics
Matches: 203, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 203 1.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:24424782 original size:22 final size:22
Alignment explanation
Indices: 24424730--24424794 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
24424720 GCCAATTATT
* *
24424730 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
24424752 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
24424774 CTGATTATGGCTCTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
24424795 ACGTATTTGC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.20, C:0.28, G:0.22, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:24425133 original size:6 final size:6
Alignment explanation
Indices: 24425124--24425239 Score: 87
Period size: 6 Copynumber: 18.8 Consensus size: 6
24425114 TTGCATTTAC
* * *
24425124 ATTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
*
24425174 ATTCTG ATTCTG A-TCTTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTC-TG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
24425223 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
24425240 AGTTATGATA
Statistics
Matches: 87, Mismatches: 12, Indels: 22
0.72 0.10 0.18
Matches are distributed among these distances:
5 6 0.07
6 68 0.78
7 10 0.11
8 3 0.03
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:24425155 original size:25 final size:25
Alignment explanation
Indices: 24425127--24425187 Score: 95
Period size: 25 Copynumber: 2.4 Consensus size: 25
24425117 CATTTACATT
* *
24425127 CTGATTCTGATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
24425152 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
24425177 CTGATTCTGAT
1 CTGATTCTGAT
24425188 CTTGATTCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.20, C:0.21, G:0.15, T:0.44
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:24425159 original size:31 final size:31
Alignment explanation
Indices: 24425124--24425227 Score: 108
Period size: 31 Copynumber: 3.4 Consensus size: 31
24425114 TTGCATTTAC
*
24425124 ATTCTGATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATTCTG
* *
24425155 ATTCTGATTCTG-TCACCTAATT--CTGATTCTG
1 ATTCTGATTCTGAT--TCT-GTTACCTGATTCTG
*
24425186 A-TCTTGATTCTGATTCTGTCACCTGATTCTG
1 ATTC-TGATTCTGATTCTGTTACCTGATTCTG
24425217 ATTCTGATTCT
1 ATTCTGATTCT
24425228 CATTTTGATT
Statistics
Matches: 59, Mismatches: 6, Indels: 16
0.73 0.07 0.20
Matches are distributed among these distances:
29 1 0.02
30 5 0.08
31 46 0.78
32 5 0.08
33 2 0.03
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.46
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATTCTG
Found at i:24425177 original size:19 final size:19
Alignment explanation
Indices: 24425152--24425222 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
24425142 TTACCTGATA
24425152 CTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
*
24425171 CTAATTCTGATTCTG--ATC
1 CTGATTCTGATTCTGTCA-C
*
24425189 TTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGTCAC
24425208 CTGATTCTGATTCTG
1 CTGATTCTGATTCTG
24425223 ATTCTCATTT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.02
18 14 0.31
19 29 0.64
20 1 0.02
ACGTcount: A:0.17, C:0.23, G:0.15, T:0.45
Consensus pattern (19 bp):
CTGATTCTGATTCTGTCAC
Found at i:24425187 original size:37 final size:36
Alignment explanation
Indices: 24425146--24425239 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 36
24425136 ATTCTGTTAC
24425146 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGAT-CTGATTCTGATTCTGTCACCTAATTCTGATT
*
24425183 CTGATCTTGATTCTGATTCTGTCACCTGATTCTGATT
1 CTGATC-TGATTCTGATTCTGTCACCTAATTCTGATT
* *
24425220 CTGATTCTCATTTTGATTCT
1 CTGA-TCTGATTCTGATTCT
24425240 AGTTATGATA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
36 1 0.02
37 49 0.94
38 2 0.04
ACGTcount: A:0.18, C:0.21, G:0.14, T:0.47
Consensus pattern (36 bp):
CTGATCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:24427725 original size:43 final size:43
Alignment explanation
Indices: 24427649--24427812 Score: 224
Period size: 43 Copynumber: 3.9 Consensus size: 43
24427639 AAGTCTGAAC
* * *
24427649 TCAT-TCACCGGCATT-TCGCCTGTTAGGCTCGAAGCTTGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCTCGATA
* *
24427690 TCATCTCACCGGCATTATAGCCTGCTAGGCCCGAAGCCCGATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCTCGATA
* *
24427733 TCATCTCACCGGCATTACAGCCTGCTAGGCTCGAAGCTCAATA
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCTCGATA
* * *
24427776 TCATATCATCGGCATTATAGCCTGCTAGGCTCAAAGC
1 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGC
24427813 CCGAATGTCA
Statistics
Matches: 108, Mismatches: 13, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
41 4 0.04
42 11 0.10
43 93 0.86
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (43 bp):
TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCTCGATA
Found at i:24444373 original size:43 final size:43
Alignment explanation
Indices: 24444303--24444476 Score: 255
Period size: 43 Copynumber: 4.1 Consensus size: 43
24444293 AAGTCTGAAC
* *
24444303 TCAT-TCACTGGCATT-TCGCCTGCTAGGCTCGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
* *
24444344 TCATCTCACTGACATTTTAGCCTGCTAGGCCCGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
*
24444387 TCAACTCACTGACATTATAGCCTGCTAGGC-CTGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTC-GAAGCCCGATA
* *
24444430 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
24444473 TCAT
1 TCAT
24444477 ATCATCGGTA
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
41 4 0.03
42 11 0.09
43 105 0.87
44 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (43 bp):
TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
Found at i:24444511 original size:43 final size:43
Alignment explanation
Indices: 24444303--24444513 Score: 227
Period size: 43 Copynumber: 5.0 Consensus size: 43
24444293 AAGTCTGAAC
* *
24444303 TCAT-TCACTGGCATT-TCGCCTGCTAGGCTCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * * * *
24444344 TCATCTCACTGACATTTTAGCCTGCTAGGCCCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* *
24444387 TCA-ACTCACTGACATTATAGCCTGCTAGGC-CTGAAGCCCGATA
1 TCATA-TCACCGGCATTATAGCCTGCTAGGCTC-GAAGCCCGATA
*
24444430 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * *
24444473 TCATATCATCGGTATTATAGTCC-GGTAGGCTC-ACAGCCCGA
1 TCATATCACCGGCATTATAG-CCTGCTAGGCTCGA-AGCCCGA
24444514 ATGTCACATT
Statistics
Matches: 150, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
41 4 0.03
42 12 0.08
43 131 0.87
44 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (43 bp):
TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
Found at i:24461027 original size:43 final size:43
Alignment explanation
Indices: 24460957--24461130 Score: 255
Period size: 43 Copynumber: 4.1 Consensus size: 43
24460947 AAGTCTGAAC
* *
24460957 TCAT-TCACTGGCATT-TCGCCTGCTAGGCTCGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
* *
24460998 TCATCTCACTGACATTTTAGCCTGCTAGGCCCGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
*
24461041 TCAACTCACTGACATTATAGCCTGCTAGGC-CTGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTC-GAAGCCCGATA
* *
24461084 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
1 TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
24461127 TCAT
1 TCAT
24461131 ATCATCGGTA
Statistics
Matches: 121, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
41 4 0.03
42 11 0.09
43 105 0.87
44 1 0.01
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (43 bp):
TCATCTCACTGACATTATAGCCTGCTAGGCTCGAAGCCCGATA
Found at i:24461165 original size:43 final size:43
Alignment explanation
Indices: 24460957--24461167 Score: 227
Period size: 43 Copynumber: 5.0 Consensus size: 43
24460947 AAGTCTGAAC
* *
24460957 TCAT-TCACTGGCATT-TCGCCTGCTAGGCTCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * * * *
24460998 TCATCTCACTGACATTTTAGCCTGCTAGGCCCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* *
24461041 TCA-ACTCACTGACATTATAGCCTGCTAGGC-CTGAAGCCCGATA
1 TCATA-TCACCGGCATTATAGCCTGCTAGGCTC-GAAGCCCGATA
*
24461084 TCATCTCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
1 TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
* * *
24461127 TCATATCATCGGTATTATAGTCC-GGTAGGCTC-ACAGCCCGA
1 TCATATCACCGGCATTATAG-CCTGCTAGGCTCGA-AGCCCGA
24461168 ATGTCACATT
Statistics
Matches: 150, Mismatches: 12, Indels: 14
0.85 0.07 0.08
Matches are distributed among these distances:
41 4 0.03
42 12 0.08
43 131 0.87
44 3 0.02
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.25
Consensus pattern (43 bp):
TCATATCACCGGCATTATAGCCTGCTAGGCTCGAAGCCCGATA
Found at i:24466722 original size:72 final size:72
Alignment explanation
Indices: 24466630--24466817 Score: 254
Period size: 72 Copynumber: 2.6 Consensus size: 72
24466620 TATGTAATAT
* ** *
24466630 GGGTCTGGGTGCTGACTTTGTGTATAAACCAGTGAGTAACTCGCTGAGCGAGCA-TATCATGTTA
1 GGGTCCGGGTGCTGACTTTGTGTATAAACCAGTGAGTAACTCAATGAGCGAGCATTA-CATGATA
24466694 ATGCTTTG
65 ATGCTTTG
* * *
24466702 GGGTCCGGGTACTGACTTTGTGTATAAACTC-GTGAGTAGCTCAATGAGCGGGCATTACATGATA
1 GGGTCCGGGTGCTGACTTTGTGTATAAAC-CAGTGAGTAACTCAATGAGCGAGCATTACATGATA
24466766 ATGCTTTG
65 ATGCTTTG
* * *
24466774 GGGTCCGGGTGCTGACTTTGTGTACAGACCAGTGAGTAGCTCAA
1 GGGTCCGGGTGCTGACTTTGTGTATAAACCAGTGAGTAACTCAA
24466818 ATGTGGGCAT
Statistics
Matches: 103, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
71 1 0.01
72 99 0.96
73 3 0.03
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (72 bp):
GGGTCCGGGTGCTGACTTTGTGTATAAACCAGTGAGTAACTCAATGAGCGAGCATTACATGATAA
TGCTTTG
Found at i:24470774 original size:25 final size:25
Alignment explanation
Indices: 24470727--24470774 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
24470717 TTATAATATG
* * * *
24470727 AAAATGACCGTTTTGCCCTTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
24470752 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
24470775 GTTTATATAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:24478803 original size:25 final size:25
Alignment explanation
Indices: 24478774--24478821 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
24478764 TTATAATATG
* * *
24478774 AAAATAACCTTTTTGCCCCTAGGTA
1 AAAATAACCATTATACCCCTAGGTA
24478799 AAAATAACCATTATACCCCTAGG
1 AAAATAACCATTATACCCCTAGG
24478822 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (25 bp):
AAAATAACCATTATACCCCTAGGTA
Found at i:24478896 original size:25 final size:25
Alignment explanation
Indices: 24478858--24478905 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
24478848 ATTTTGATAA
24478858 ACATGATATGTATGATATGCACACG
1 ACATGATATGTATGATATGCACACG
24478883 ACATG-TATGATATGATATGCACA
1 ACATGATATG-TATGATATGCACA
24478906 TGATGTATTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.29
Consensus pattern (25 bp):
ACATGATATGTATGATATGCACACG
Found at i:24478988 original size:26 final size:26
Alignment explanation
Indices: 24478959--24479020 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
24478949 GAGGAAGTGC
24478959 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* *
24478985 AAAAGGGCTTATGCCCTAGTTTATCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
24479011 AAAAGGGCTT
1 AAAAGGGCTT
24479021 NNNNNNNNNN
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:24482230 original size:145 final size:145
Alignment explanation
Indices: 24481967--24482395 Score: 662
Period size: 145 Copynumber: 3.0 Consensus size: 145
24481957 GGAATACTAC
24481967 TGAATATTCTATAAGCCTCAAACATGGGTTAAGTTGTCGATGCCATGTCCCAGACATGGTCTTAC
1 TGAATATTCTATAAGCCTCAAACATGGGTTAAGTTGTCGATGCCATGTCCCAGACATGGTCTTAC
24482032 ACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGACATGTCTTACACTAGCACGAAGCTTAG
66 ACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGACATGTCTTACACTAGCACGAAGCTTAG
24482097 CCGATGCATGTCCCA
131 CCGATGCATGTCCCA
24482112 TGAATATTCTATAAGCCTCAAACATGGGTTAAGTTGTCGATGCCATGTCCCAGACATGGTCTTAC
1 TGAATATTCTATAAGCCTCAAACATGGGTTAAGTTGTCGATGCCATGTCCCAGACATGGTCTTAC
24482177 ACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGACATGTCTTACACTAGCACGAAGCTTAG
66 ACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGACATGTCTTACACTAGCACGAAGCTTAG
24482242 CCGATGCATGTCCCA
131 CCGATGCATGTCCCA
* * * * ** * * *
24482257 -GACACGTCTTAC-AT-TGGCT--ACCAT-CATTGAG--GCCGATG-CATGTCCTAGACAT-GTC
1 TGA-A--TATT-CTATAAGCCTCAAACATGGGTTAAGTTGTCGATGCCATGTCCCAGACATGGTC
24482312 TTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGACATGTCTTACACTAGCACGAAGC
62 TTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGACATGTCTTACACTAGCACGAAGC
*
24482377 TTAGTCGATGCATGTCCCA
127 TTAGCCGATGCATGTCCCA
24482396 GACACGTCTT
Statistics
Matches: 270, Mismatches: 10, Indels: 14
0.92 0.03 0.05
Matches are distributed among these distances:
139 86 0.32
140 13 0.05
141 6 0.02
143 4 0.01
144 6 0.02
145 146 0.54
146 3 0.01
147 5 0.02
148 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (145 bp):
TGAATATTCTATAAGCCTCAAACATGGGTTAAGTTGTCGATGCCATGTCCCAGACATGGTCTTAC
ACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGACATGTCTTACACTAGCACGAAGCTTAG
CCGATGCATGTCCCA
Found at i:24482307 original size:47 final size:47
Alignment explanation
Indices: 24482205--24482696 Score: 362
Period size: 47 Copynumber: 10.6 Consensus size: 47
24482195 GTGCTACTGT
* * *
24482205 ATGTCCCAGACATGTCTTACACTAGC-ACGAAGC-TT-A-GCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCATTGAGGCCGATGC
* *
24482249 ATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
* * * * * * *
24482296 ATGTCCTAGACATGTCTTACACTAGCT-CTCGT-GTATAAGTG-CTACTGT
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCAT-TGAG-GCCGA-TGC
* * * *
24482344 ATGTCCCAGACATGTCTTACACTAGC-ACGAAGC-TT-A-GTCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCATTGAGGCCGATGC
* * *
24482388 ATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGTCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
* * *
24482435 ATGTCCCAGACACGTCTTACATTGGCTACCACCATTGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
* * * * * * *
24482482 ATGTCCTAGACATGTCTTACACTAGCT-CTCGT-GTATAAGTG-CTACTGT
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCAT-TGAG-GCCGA-TGC
* * *
24482530 ATGTCCCAAACATGTCTTACACTAGCATGA--AGC-TT-A-GCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGC-T-ACCATCATTGAGGCCGATGC
*
24482574 ATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAGGCCGATGC
1 ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
* * *
24482621 ATGTCCTAGACATGTCTTACACTGGC-ACTTATC-TCT-ACGCCGATGCC
1 ATGTCCCAGACATGTCTTACACTGGCTAC-CATCAT-TGAGGCCGATG-C
24482668 ATGTCCCAGACATGGTCTTACACTGGCTA
1 ATGTCCCAGACAT-GTCTTACACTGGCTA
24482697 TCGTAATGTG
Statistics
Matches: 361, Mismatches: 53, Indels: 63
0.76 0.11 0.13
Matches are distributed among these distances:
42 1 0.00
43 1 0.00
44 81 0.22
45 14 0.04
46 20 0.06
47 171 0.47
48 71 0.20
49 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.27
Consensus pattern (47 bp):
ATGTCCCAGACATGTCTTACACTGGCTACCATCATTGAGGCCGATGC
Found at i:24482355 original size:48 final size:46
Alignment explanation
Indices: 24482004--24482787 Score: 243
Period size: 47 Copynumber: 16.8 Consensus size: 46
24481994 GTTAAGTTGT
24482004 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTGTATAAG-G
* * * * *
24482053 CTACTGTATGTCCCAGACATGTCTTACACTAG--CACGAAGCT-T-AGC
1 CGA-TGCATGTCCCAGACATGTCTTACACTAGCTCTCG-TG-TATAAGG
* * * *
24482098 CGATGCATGTCCCATGA-ATAT-TCTATA--AGCCTCAAACATGGGT-TAAGTTG
1 CGATGCATGTCCCA-GACATGTCT-TACACTAG-CTC--TC--GTGTATAAG--G
24482148 TCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTG
1 -CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTGTATAAG-G
* * * * *
24482198 CTACTGTATGTCCCAGACATGTCTTACACTAG--CACGAAGCT-T-AGC
1 CGA-TGCATGTCCCAGACATGTCTTACACTAGCTCTCG-TG-TATAAGG
* * * * * *
24482243 CGATGCATGTCCCAGACACGTCTTACATTGGCTAC-CAT-CATTGAGG
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-CTCGTGTA-TAAGG
*
24482289 CCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTGTATAAGTG
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAG-G
* * * * *
24482337 CTACTGTATGTCCCAGACATGTCTTACACTAG--CACGAAGCT-T-AGT
1 CGA-TGCATGTCCCAGACATGTCTTACACTAGCTCTCG-TG-TATAAGG
* * * * * *
24482382 CGATGCATGTCCCAGACACGTCTTACATTGGCTAC-CAT-CATTGAGG
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-CTCGTGTA-TAAGG
* * * *** *
24482428 TCGATGCATGTCCCAGACACGTCTTACATTGGCTAC-C-ACCATTGAGG
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCT-CTCGTGTA-TAAGG
*
24482475 CCGATGCATGTCCTAGACATGTCTTACACTAGCTCTCGTGTATAAGTG
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAG-G
* * * * * *
24482523 CTACTGTATGTCCCAAACATGTCTTACACTAGC-AT-GAAGCT-T-AGC
1 CGA-TGCATGTCCCAGACATGTCTTACACTAGCTCTCG-TG-TATAAGG
* * * * *
24482568 CGATGCATGTCCCAGACACGTCTTACACTGGCTAC-CAT-CATTGAGG
1 CGATGCATGTCCCAGACATGTCTTACACTAGCT-CTCGTGTA-TAAGG
* * * ** * * * *
24482614 CCGATGCATGTCCTAGACATGTCTTACACTGGCACTTATCTCTACGC
1 -CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAGG
* * * **
24482661 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTATCGT-AATGTGG
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCGTGTATAAGG
* * * * * *
24482708 C--TG-ATGT-CCAAACACGTCTTACACTAGCCCTCGTCTCA-ATGT
1 CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGT-ATAAGG
* *
24482750 CGATGCCATGTCCCAGACATGGTCTTACATTGGCTCTC
1 CGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTC
24482788 ACATAAACCA
Statistics
Matches: 553, Mismatches: 110, Indels: 145
0.68 0.14 0.18
Matches are distributed among these distances:
41 16 0.03
42 11 0.02
43 6 0.01
44 91 0.16
45 16 0.03
46 38 0.07
47 186 0.34
48 116 0.21
49 31 0.06
50 9 0.02
51 11 0.02
52 12 0.02
53 4 0.01
54 4 0.01
55 2 0.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (46 bp):
CGATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTGTATAAGG
Found at i:24482420 original size:139 final size:141
Alignment explanation
Indices: 24482002--24482455 Score: 681
Period size: 139 Copynumber: 3.2 Consensus size: 141
24481992 GGGTTAAGTT
24482002 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCC
* * *
24482067 AGACATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCATGA-A--TATT-CTATAAGC
66 AGACATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCA-GACACGTCTTAC-AT-TGG
* ** *
24482128 CTCAAACATGGGTTAAG
128 CT--ACCAT-CATTGAG
24482145 TTGTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTC
1 --GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTC
24482210 CCAGACATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACATTGGC
64 CCAGACATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACATTGGC
24482275 TACCATCATTGAG
129 TACCATCATTGAG
* *
24482288 GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCC
*
24482351 AGACATGTCTTACACTAGCACGAAGCTTAGTCGATGCATGTCCCAGACACGTCTTACATTGGCTA
66 AGACATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACATTGGCTA
24482416 CCATCATTGAG
131 CCATCATTGAG
*
24482427 GTCGATG-CATGTCCCAGACA-CGTCTTACA
1 GTCGATGCCATGTCCCAGACATGGTCTTACA
24482456 TTGGCTACCA
Statistics
Matches: 292, Mismatches: 12, Indels: 16
0.91 0.04 0.05
Matches are distributed among these distances:
139 143 0.49
140 13 0.04
141 6 0.02
143 4 0.01
144 6 0.02
145 111 0.38
146 3 0.01
147 5 0.02
148 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (141 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCC
AGACATGTCTTACACTAGCACGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACATTGGCTA
CCATCATTGAG
Found at i:24482448 original size:186 final size:186
Alignment explanation
Indices: 24482241--24482700 Score: 737
Period size: 186 Copynumber: 2.5 Consensus size: 186
24482231 ACGAAGCTTA
24482241 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGCATGTCCTAGA
1 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGCATGTCCTAGA
*
24482306 CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAGACATGTCTTACACTAGCA
66 CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCA
* *
24482371 CGAAGCTTAGTCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAG
131 CGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
* *
24482427 GTCGATGCATGTCCCAGACACGTCTTACATTGGCTACCACCATTGAGGCCGATGCATGTCCTAGA
1 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGCATGTCCTAGA
24482492 CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCA
66 CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCA
*
24482557 TGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
131 CGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
* * * * * *
24482613 GCCGATGCATGTCCTAGACATGTCTTACACTGGC-ACTTATC-TCT-ACGCCGATGCCATGTCCC
1 GCCGATGCATGTCCCAGACACGTCTTACATTGGCTAC-CATCAT-TGAGGCCGATG-CATGTCCT
* *
24482675 AGACATGGTCTTACACTGGCTATCGT
63 AGACAT-GTCTTACACTAGCTCTCGT
24482701 AATGTGGCTG
Statistics
Matches: 254, Mismatches: 16, Indels: 7
0.92 0.06 0.03
Matches are distributed among these distances:
185 11 0.04
186 226 0.89
187 17 0.07
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (186 bp):
GCCGATGCATGTCCCAGACACGTCTTACATTGGCTACCATCATTGAGGCCGATGCATGTCCTAGA
CATGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCA
CGAAGCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAG
Found at i:24482686 original size:139 final size:139
Alignment explanation
Indices: 24482429--24482691 Score: 377
Period size: 139 Copynumber: 1.9 Consensus size: 139
24482419 TCATTGAGGT
*
24482429 CGATGCATGTCCCAGACACGTCTTACATTGGCTACCACCATTGAGGCCGATGCATGTCCTAGACA
1 CGATGCATGTCCCAGACACGTCTTACACTGGCTACCACCATTGAGGCCGATGCATGTCCTAGACA
* * * * * *
24482494 TGTCTTACACTAGCTCTCGTGTATAAGTGCTACTGTATGTCCCAAACATGTCTTACACTAGCATG
66 TGTCTTACACTAGCACTCATCTATAAGTCCGACTGCATGTCCCAAACATGTCTTACACTAGCATG
24482559 AAGCTTAGC
131 AAGCTTAGC
*
24482568 CGATGCATGTCCCAGACACGTCTTACACTGGCTACCATCATTGAGGCCGATGCATGTCCTAGACA
1 CGATGCATGTCCCAGACACGTCTTACACTGGCTACCACCATTGAGGCCGATGCATGTCCTAGACA
* * * * *
24482633 TGTCTTACACTGGCACTTATCTCTACG-CCGA-TGCCATGTCCCAGACATGGTCTTACACT
66 TGTCTTACACTAGCACTCATCTATAAGTCCGACTG-CATGTCCCAAACAT-GTCTTACACT
24482692 GGCTATCGTA
Statistics
Matches: 109, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
137 2 0.02
138 14 0.13
139 93 0.85
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (139 bp):
CGATGCATGTCCCAGACACGTCTTACACTGGCTACCACCATTGAGGCCGATGCATGTCCTAGACA
TGTCTTACACTAGCACTCATCTATAAGTCCGACTGCATGTCCCAAACATGTCTTACACTAGCATG
AAGCTTAGC
Found at i:24484898 original size:46 final size:47
Alignment explanation
Indices: 24484794--24484913 Score: 152
Period size: 46 Copynumber: 2.6 Consensus size: 47
24484784 TGTCTTCGAC
** * *
24484794 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* *
24484842 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
* *
24484888 ATGGATTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
24484914 CTGCCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 33 0.52
48 30 0.48
ACGTcount: A:0.28, C:0.22, G:0.14, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:24486509 original size:46 final size:47
Alignment explanation
Indices: 24486405--24486524 Score: 143
Period size: 46 Copynumber: 2.6 Consensus size: 47
24486395 TGTCTTCGAC
** * *
24486405 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCA-ATATATATAAT
* * * *
24486453 ATGGGCTTACATGGCTCATTCTTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
24486499 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
24486525 CTGTCCTGTC
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
46 32 0.52
48 29 0.48
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.37
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:24493894 original size:46 final size:47
Alignment explanation
Indices: 24493788--24493909 Score: 138
Period size: 46 Copynumber: 2.6 Consensus size: 47
24493778 TGTCTTCGAC
** * *
24493788 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCC--A-ATATATATAAT
* * *
24493838 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATATCTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
*
24493884 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
24493910 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 33 0.52
50 30 0.48
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (47 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCAATATATATAAT
Found at i:24514975 original size:27 final size:28
Alignment explanation
Indices: 24514919--24514988 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
24514909 TAAATTGTAC
24514919 AGCACTAAGTGTGCGAGCTTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATAT
24514947 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGCTTGATTATAT
*
24514974 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
24514989 GACTCAATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 24 0.59
28 17 0.41
ACGTcount: A:0.27, C:0.14, G:0.29, T:0.30
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGCTTGATTATAT
Found at i:24514999 original size:27 final size:27
Alignment explanation
Indices: 24514919--24514999 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
24514909 TAAATTGTAC
* *
24514919 AGCACTAAGTGTGCGAGCTTGATTATAT
1 AGCACTAAGTGTGCGAGC-TCAATATAT
* * *
24514947 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGCTCAATATAT
*
24514974 AGCACTGAGTGTGCG-GACTCAATATA
1 AGCACTAAGTGTGCGAG-CTCAATATA
24515000 CATTCGTGAA
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
26 1 0.02
27 29 0.62
28 17 0.36
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGCTCAATATAT
Found at i:24525029 original size:43 final size:43
Alignment explanation
Indices: 24524968--24525141 Score: 165
Period size: 43 Copynumber: 4.0 Consensus size: 43
24524958 TAAGTTCGTA
* *
24524968 CAATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATAT
* * *
24525011 CAATGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCATATAT
1 CAATGCCAAC-GTCCCAGACATGGTCTTACACGTAATCAAATAT
* * * * * *
24525054 -GATGCCAATGTCCTAGGCATGGTCTTACACGTAAATAAAAAAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACGT-AATCAAATAT
** * *
24525097 TGATGCCAACGTCCCAGACGTGGTCTTACACGATAA-CACATAT
1 CAATGCCAACGTCCCAGACATGGTCTTACACG-TAATCAAATAT
24525140 CA
1 CA
24525142 GAATCCTATG
Statistics
Matches: 103, Mismatches: 23, Indels: 10
0.76 0.17 0.07
Matches are distributed among these distances:
42 26 0.25
43 47 0.46
44 29 0.28
45 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACATGGTCTTACACGTAATCAAATAT
Found at i:24529891 original size:268 final size:268
Alignment explanation
Indices: 24529414--24529949 Score: 955
Period size: 268 Copynumber: 2.0 Consensus size: 268
24529404 AGACATGTCC
*
24529414 TACACTAGCACAACTCTTAGCCAATGCATGTCCCAGACACGTCTTACACTAGCTATCTTTGTTGA
1 TACACTAGCACAACTCTTAGCCAATGCATGTCCCAGACACGTCTTACACTAGCTATCTCTGTTGA
*
24529479 GGCTGATGCATGTCCTAGACATGTCTTACTCTGGCACTCATAATATGGCTAAAGCATGTCCCAGA
66 GGCCGATGCATGTCCTAGACATGTCTTACTCTGGCACTCATAATATGGCTAAAGCATGTCCCAGA
* * *
24529544 CATGTCTTACACTAGCCCTCGCCTGGATGCCGATGCCATGTCCCAGACATGGTCTTATACTGGCG
131 CATGTCTTACACTAGCCCTCGCCTGGATGCCCATGCCATGCCCCAGACATGGTCTCATACTGGCG
*
24529609 TACAAATCACCCAACGTCTTAGCACGAATATCCAATTCATATCCTAAGGTTCAACGAGATATTTC
196 TACAAATCACCCAACGTCTTAGCAAGAATATCCAATTCATATCCTAAGGTTCAACGAGATATTTC
24529674 TACTATCT
261 TACTATCT
* *
24529682 TACACTAGCACAACTCTTAGCCGATGCATGTCCCAGACACGTCTTACACTGGCTATCTCTGTTGA
1 TACACTAGCACAACTCTTAGCCAATGCATGTCCCAGACACGTCTTACACTAGCTATCTCTGTTGA
* *
24529747 GGCCGATGCATGTCCTAGACATGTCTTACTCTGGCACTCATAATATGTCTGAAGCATGTCCCAGA
66 GGCCGATGCATGTCCTAGACATGTCTTACTCTGGCACTCATAATATGGCTAAAGCATGTCCCAGA
* * *
24529812 CATGTCTTACACTAGCCCTCGTCTGGATGCCCATGCCATGCCCCAGATATGGTCTCATACTGGTG
131 CATGTCTTACACTAGCCCTCGCCTGGATGCCCATGCCATGCCCCAGACATGGTCTCATACTGGCG
24529877 TACAAATCACCCAACGTCTTAGCAAGAATATCCAATTCATATCCTAAGGTTCAACGAGATATTTC
196 TACAAATCACCCAACGTCTTAGCAAGAATATCCAATTCATATCCTAAGGTTCAACGAGATATTTC
24529942 TACTATCT
261 TACTATCT
24529950 CAAATATTAC
Statistics
Matches: 255, Mismatches: 13, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
268 255 1.00
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (268 bp):
TACACTAGCACAACTCTTAGCCAATGCATGTCCCAGACACGTCTTACACTAGCTATCTCTGTTGA
GGCCGATGCATGTCCTAGACATGTCTTACTCTGGCACTCATAATATGGCTAAAGCATGTCCCAGA
CATGTCTTACACTAGCCCTCGCCTGGATGCCCATGCCATGCCCCAGACATGGTCTCATACTGGCG
TACAAATCACCCAACGTCTTAGCAAGAATATCCAATTCATATCCTAAGGTTCAACGAGATATTTC
TACTATCT
Found at i:24547935 original size:84 final size:84
Alignment explanation
Indices: 24547794--24547960 Score: 248
Period size: 84 Copynumber: 2.0 Consensus size: 84
24547784 AAAAATTGCC
* *
24547794 GATGCCATATCCCAGACATGACCTTATACTGGCTCTCATATATGCGTGCTGATGCATGTCCCAGA
1 GATGCCATATCCCAGACATGACCTTATACTGACTCTCATATATGAGTGCTGATGCATGTCCCAGA
*
24547859 CATGTCTTACACTAGCACT
66 CATATCTTACACTAGCACT
* *
24547878 GATGCCATGTCCCAGACATCG-TCTTATACTGACTCTCATATATGAGTG-TCGATGCATGTCCCA
1 GATGCCATATCCCAGACAT-GACCTTATACTGACTCTCATATATGAGTGCT-GATGCATGTCCCA
*
24547941 GATATATCTTACACTAGCAC
64 GACATATCTTACACTAGCAC
24547961 AACTCTTAGC
Statistics
Matches: 75, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
83 1 0.01
84 73 0.97
85 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (84 bp):
GATGCCATATCCCAGACATGACCTTATACTGACTCTCATATATGAGTGCTGATGCATGTCCCAGA
CATATCTTACACTAGCACT
Found at i:24548163 original size:42 final size:42
Alignment explanation
Indices: 24548061--24548212 Score: 157
Period size: 43 Copynumber: 3.5 Consensus size: 42
24548051 TACAATGCAA
* * *
24548061 ATGTCCTAGACTTGGTCTTACATGTAATCAAATATCGATGCC
1 ATGTCCCAGACTTGGTCTTACACGAAATCAAATATCGATGCC
** *
24548103 ACTGTCCCAGACAGGGTCTTACACGAAATCATATA-CGATGCC
1 A-TGTCCCAGACTTGGTCTTACACGAAATCAAATATCGATGCC
* *
24548145 GATGTCCTAGACTTGGTCTTACACGTAAATCACAA-ATCGATACC
1 -ATGTCCCAGACTTGGTCTTACACG-AAATCA-AATATCGATGCC
24548189 AATGTCCCAGA-TGTGGTCTTACAC
1 -ATGTCCCAGACT-TGGTCTTACAC
24548213 AATGACACAT
Statistics
Matches: 91, Mismatches: 13, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
42 28 0.31
43 36 0.40
44 27 0.30
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
ATGTCCCAGACTTGGTCTTACACGAAATCAAATATCGATGCC
Found at i:24565524 original size:19 final size:19
Alignment explanation
Indices: 24565502--24565540 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
24565492 TTTGTCTTTG
*
24565502 TCTTTAATTTTAATTTTAA
1 TCTTTAATTTTAATTCTAA
*
24565521 TCTTTATTTTTAATTCTAA
1 TCTTTAATTTTAATTCTAA
24565540 T
1 T
24565541 GCTAGTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (19 bp):
TCTTTAATTTTAATTCTAA
Found at i:24566965 original size:22 final size:22
Alignment explanation
Indices: 24566937--24566980 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
24566927 TTGTGATGTT
24566937 AGTTGAGGAATTATGAAAGATA
1 AGTTGAGGAATTATGAAAGATA
24566959 AGTTGAGGAATTATGAAAGATA
1 AGTTGAGGAATTATGAAAGATA
24566981 TGTTTTGGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.27, T:0.27
Consensus pattern (22 bp):
AGTTGAGGAATTATGAAAGATA
Found at i:24567613 original size:43 final size:43
Alignment explanation
Indices: 24567541--24567763 Score: 306
Period size: 43 Copynumber: 5.2 Consensus size: 43
24567531 TACATTTTGA
* * **
24567541 GTTGCCATTGATATGTGATTATGTGTAAGACCACGTCTGGGAC
1 GTTGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGAC
* * *
24567584 GTTGGCATCGATATGTGATTACATATAAGACCACATCTGGGAT
1 GTTGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGAC
*
24567627 GTTGGCATCGATATGTGATTACATGTAAGATCACGTCTGGGAC
1 GTTGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGAC
*
24567670 GTTGGCATCGATATGTGATTACATGTAAGACC-CTGTCTGAGAC
1 GTTGGCATCGATATGTGATTACATGTAAGACCAC-GTCTGGGAC
** *
24567713 -TGTGGCATCGATACATGATTACATGCAAGACCACGTCTGGGAC
1 GT-TGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGAC
24567756 GTTGGCAT
1 GTTGGCAT
24567764 TGTACGATAT
Statistics
Matches: 159, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
42 2 0.01
43 155 0.97
44 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
GTTGGCATCGATATGTGATTACATGTAAGACCACGTCTGGGAC
Found at i:24575107 original size:43 final size:43
Alignment explanation
Indices: 24575039--24575268 Score: 256
Period size: 43 Copynumber: 5.4 Consensus size: 43
24575029 ACATTTTGAG
*
24575039 TTGGCATTGATATGTGATTACGTGTAAGACCACGTCTAGGGCA
1 TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTAGGGCA
* *
24575082 TTGGCATCGATATGTAATTATGTGTAAGACCACGTCT-GGG-A
1 TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTAGGGCA
* *
24575123 TGTTGGCATCGATATGTGATTACATGTAAGACCACGT-TTGGG-A
1 --TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTAGGGCA
* *
24575166 TGTTGGCATCGATATGTGATTACGCGTAAGA-CACTGTCTGGGGCA
1 --TTGGCATCGATATGTGATTACGTGTAAGACCAC-GTCTAGGGCA
* * * * *
24575211 GTGGCATCGATATATGATTACATGTAAGACCACGTCTAGGACG
1 TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTAGGGCA
*
24575254 TTGGCATTG-TATGTG
1 TTGGCATCGATATGTG
24575269 CGACTATTCG
Statistics
Matches: 161, Mismatches: 19, Indels: 15
0.83 0.10 0.08
Matches are distributed among these distances:
41 1 0.01
42 12 0.07
43 140 0.87
44 7 0.04
45 1 0.01
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
TTGGCATCGATATGTGATTACGTGTAAGACCACGTCTAGGGCA
Found at i:24583735 original size:34 final size:34
Alignment explanation
Indices: 24583692--24583760 Score: 129
Period size: 34 Copynumber: 2.0 Consensus size: 34
24583682 ACTCAATTCC
24583692 TTATTCTTATGTTTTATAACATGATGATCACTTT
1 TTATTCTTATGTTTTATAACATGATGATCACTTT
*
24583726 TTATTCTTATGTTTTATAACATGCTGATCACTTT
1 TTATTCTTATGTTTTATAACATGATGATCACTTT
24583760 T
1 T
24583761 CCCTTCTATG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.25, C:0.13, G:0.09, T:0.54
Consensus pattern (34 bp):
TTATTCTTATGTTTTATAACATGATGATCACTTT
Found at i:24591469 original size:18 final size:18
Alignment explanation
Indices: 24591446--24591482 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
24591436 CGATTAGGCC
24591446 TTAATTCAGGATATTACA
1 TTAATTCAGGATATTACA
**
24591464 TTAATTTGGGATATTACA
1 TTAATTCAGGATATTACA
24591482 T
1 T
24591483 GAAAGGGGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (18 bp):
TTAATTCAGGATATTACA
Found at i:24595327 original size:43 final size:43
Alignment explanation
Indices: 24595280--24595449 Score: 159
Period size: 43 Copynumber: 4.0 Consensus size: 43
24595270 ATCAATATCG
* * *
24595280 ATATGTAATTATC-TGTAAGACCATGTCT-GAAATGTTGGCATCA
1 ATATGTGATTA-CATGTAAGACCACGTCTAG-AACGTTGGCATCA
* *
24595323 ATATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCATCG
1 ATATGTGATTACATGTAAGACCACGTCTAGAACGTTGGCATCA
* * * *
24595366 ATATGTGATTACGTGTAAGACC-CTATCTGGGACAG-TGGCATCA
1 ATATGTGATTACATGTAAGACCAC-GTCTAGAAC-GTTGGCATCA
* * * *
24595409 ATATATGATTACATGTAAGACCACGTTTGGGACGTTGGCAT
1 ATATGTGATTACATGTAAGACCACGTCTAGAACGTTGGCAT
24595450 TGTATGATAT
Statistics
Matches: 108, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
42 3 0.03
43 102 0.94
44 3 0.03
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
ATATGTGATTACATGTAAGACCACGTCTAGAACGTTGGCATCA
Found at i:24595383 original size:86 final size:85
Alignment explanation
Indices: 24595276--24595449 Score: 235
Period size: 86 Copynumber: 2.0 Consensus size: 85
24595266 GGGCATCAAT
* *
24595276 ATCGATATGTAATTATCTGTAAGACCATGTCT-GAAATGTTGGCATCAATATGTGATTACATGTA
1 ATCGATATGTAATTATCTGTAAGACCATATCTGGAAA-G-TGGCATCAATATATGATTACATGTA
24595340 AGACCACGTCTAGGACGTTGGC
64 AGACCACGTCTAGGACGTTGGC
* * *
24595362 ATCGATATGTGATTA-CGTGTAAGACCCTATCTGGGACAGTGGCATCAATATATGATTACATGTA
1 ATCGATATGTAATTATC-TGTAAGACCATATCT-GGAAAGTGGCATCAATATATGATTACATGTA
* *
24595426 AGACCACGTTTGGGACGTTGGC
64 AGACCACGTCTAGGACGTTGGC
24595448 AT
1 AT
24595450 TGTATGATAT
Statistics
Matches: 78, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
85 1 0.01
86 73 0.94
87 1 0.01
88 3 0.04
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (85 bp):
ATCGATATGTAATTATCTGTAAGACCATATCTGGAAAGTGGCATCAATATATGATTACATGTAAG
ACCACGTCTAGGACGTTGGC
Found at i:24596180 original size:12 final size:12
Alignment explanation
Indices: 24596165--24596190 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24596155 ATATAAGTAT
24596165 ATATATATGTGA
1 ATATATATGTGA
24596177 ATATATATGTGA
1 ATATATATGTGA
24596189 AT
1 AT
24596191 CTTGTTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (12 bp):
ATATATATGTGA
Found at i:24607886 original size:39 final size:40
Alignment explanation
Indices: 24607791--24608052 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
24607781 TTGAATGATG
*
24607791 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
24607829 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
24607870 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
24607909 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
24607948 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
24607987 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
24608026 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
24608053 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:24628814 original size:39 final size:39
Alignment explanation
Indices: 24628758--24629198 Score: 557
Period size: 39 Copynumber: 11.5 Consensus size: 39
24628748 TAATGGAGAA
* * *
24628758 TTATATCCGGGCAAAGTCCTGAAGGCATTCGTGTTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
24628797 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
24628836 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
** *
24628875 TTATATAAGGGCTAAGTCCCGAAGGCATTCGTACTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
24628914 TTATATCCGGGCTAAGT--------C---CGTGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
24628942 TTATATCCGGGCTAATTCCCGAAGGCATTCATGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
24628981 TTATATCTGGGCTAAGTCCCGAAGGCATTCATGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
24629020 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* *
24629059 TTATATCCGGGCTAAGTCCCGAAGGCATTCATGCTGGTA
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
24629098 TTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * *
24629137 TTATATCCAGGCTAAAGTCCC-ACAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGA-AGGCATTCGTGCTGGTG
* *
24629176 TTATTTTCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
24629199 CATGCTTTGT
Statistics
Matches: 352, Mismatches: 35, Indels: 28
0.85 0.08 0.07
Matches are distributed among these distances:
28 24 0.07
31 1 0.00
36 1 0.00
39 306 0.87
40 20 0.06
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:24628994 original size:145 final size:146
Alignment explanation
Indices: 24628787--24629179 Score: 522
Period size: 145 Copynumber: 2.6 Consensus size: 146
24628777 TGAAGGCATT
* * *
24628787 CGTGTTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTACTGGTGTTATATCCGGGCTAAG
1 CGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG
* *
24628852 TCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGCTAAGTCCCGAAGGCATTCGTACTGGTGTTA
66 TCCCGAAGGCATTCGTGCTGGTATTATATAAGAGCTAAGTCCCGAAGGCATTCGTACTGGTGTTA
24628917 TATCCGGGCTAAGT-C
131 TATCCGGGCTAAGTCC
* * *
24628932 CGTGCTGGTATTATATCCGGGCTAATTCCCGAAGGCATTCATGCTGGTGTTATATCTGGGCTAAG
1 CGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG
* ** *
24628997 TCCCGAAGGCATTCATGCTGGTATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTA
66 TCCCGAAGGCATTCGTGCTGGTATTATATAAGAGCTAAGTCCCGAAGGCATTCGTACTGGTGTTA
24629062 TATCCGGGCTAAGTCC
131 TATCCGGGCTAAGTCC
*
24629078 CGAAGGCATTCATGCTGGTATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
1 C----G------TGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATAT
* *
24629143 CCAGGCTAAAGTCCC-ACAGGC-TTTGTGCTGGTATTAT
56 CCGGGCT-AAGTCCCGA-AGGCATTCGTGCTGGTATTAT
24629180 TTTCGGGCTT
Statistics
Matches: 216, Mismatches: 19, Indels: 15
0.86 0.08 0.06
Matches are distributed among these distances:
145 132 0.61
146 2 0.01
150 1 0.00
156 70 0.32
157 11 0.05
ACGTcount: A:0.21, C:0.22, G:0.27, T:0.30
Consensus pattern (146 bp):
CGTGCTGGTATTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGCTAAG
TCCCGAAGGCATTCGTGCTGGTATTATATAAGAGCTAAGTCCCGAAGGCATTCGTACTGGTGTTA
TATCCGGGCTAAGTCC
Found at i:24629073 original size:184 final size:184
Alignment explanation
Indices: 24628757--24629116 Score: 576
Period size: 184 Copynumber: 2.0 Consensus size: 184
24628747 ATAATGGAGA
* * *
24628757 ATTATATCCGGGCAAAGTCCTGAAGGCATTCGTGTTGGTGTTATATCCGGGCTAAGTCCCGAAGG
1 ATTATATCCGGGCAAAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
* * *
24628822 CATTCGTACTGGTGTTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGC
66 CATTCATACTGGTATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGC
* * *
24628887 TAAGTCCCGAAGGCATTCGTACTGGTGTTATATCCGGGCTAAGTCCGTGCTGGT
131 TAAGTCCCGAAGGCATTCATACTGGTATTATATCCGAGCTAAGTCCGTGCTGGT
* * *
24628941 ATTATATCCGGGCTAATTCCCGAAGGCATTCATGCTGGTGTTATATCTGGGCTAAGTCCCGAAGG
1 ATTATATCCGGGCAAAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
* **
24629006 CATTCATGCTGGTATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGGGC
66 CATTCATACTGGTATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGC
*
24629071 TAAGTCCCGAAGGCATTCATGCTGGTATTATATCCGAGCTAAGTCC
131 TAAGTCCCGAAGGCATTCATACTGGTATTATATCCGAGCTAAGTCC
24629117 CGAAGGCATT
Statistics
Matches: 160, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
184 160 1.00
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (184 bp):
ATTATATCCGGGCAAAGTCCCGAAGGCATTCATGCTGGTGTTATATCCGGGCTAAGTCCCGAAGG
CATTCATACTGGTATTATATCCGAGCTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATAAGGGC
TAAGTCCCGAAGGCATTCATACTGGTATTATATCCGAGCTAAGTCCGTGCTGGT
Found at i:24633261 original size:28 final size:27
Alignment explanation
Indices: 24633197--24633376 Score: 279
Period size: 28 Copynumber: 6.6 Consensus size: 27
24633187 ATATTAAGTC
* *
24633197 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
24633224 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
24633252 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
24633279 CGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAATCA-ACT
*
24633307 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
24633335 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
24633362 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24633377 GCACAATTTA
Statistics
Matches: 143, Mismatches: 7, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
27 66 0.46
28 76 0.53
29 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:24633281 original size:55 final size:55
Alignment explanation
Indices: 24633197--24633376 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
24633187 ATATTAAGTC
* * *
24633197 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
24633252 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
* *
24633307 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATATTCA-ATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAATCATACT
24633362 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24633377 GCACAATTTA
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 92 0.77
56 27 0.23
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCATACT
Found at i:24633336 original size:83 final size:82
Alignment explanation
Indices: 24633197--24633376 Score: 297
Period size: 83 Copynumber: 2.2 Consensus size: 82
24633187 ATATTAAGTC
* * *
24633197 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCATACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
24633262 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
24633279 CGCACACTTAGTGCTACATAATCATACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAATCA-ACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTT
* *
24633344 AGTGCTACATATTCAATT
65 AGTGCTACATAGTCAACT
24633362 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24633377 GCACAATTTA
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 22 0.24
83 69 0.76
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.28
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:24643073 original size:28 final size:27
Alignment explanation
Indices: 24643012--24643108 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
24643002 TTATTAAGTC
* *
24643012 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
24643039 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
24643067 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
24643094 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24643109 GCACAATTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 38 0.59
28 26 0.41
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:24649831 original size:68 final size:67
Alignment explanation
Indices: 24649759--24649908 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
24649749 CATCATGTGT
* * * *
24649759 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
24649821 ATGTAG
62 ATGTAG
** * *
24649827 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
24649892 AG
66 AG
24649894 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
24649909 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:24649864 original size:64 final size:64
Alignment explanation
Indices: 24649783--24649966 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
24649773 AGACATTATG
* *
24649783 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
24649847 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
24649912 AA
63 AA
* * * *
24649914 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
24649967 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:24651909 original size:43 final size:42
Alignment explanation
Indices: 24651810--24651912 Score: 102
Period size: 42 Copynumber: 2.4 Consensus size: 42
24651800 TATTTACGTA
* ** * *
24651810 TAAGACCATGTCTGGGACATCGACATCGTATCTGATTTCGTG
1 TAAGACCACGTCTGGGACAGAGACATCGTATCTGATTACATG
* *
24651852 TAAGACC-CTATCTGGGACAGAGGCATCGATAT-TGAATTACATG
1 TAAGACCAC-GTCTGGGACAGAGACATCG-TATCTG-ATTACATG
24651895 TAAGACCACGTCTGGGAC
1 TAAGACCACGTCTGGGAC
24651913 GTCAGCATTG
Statistics
Matches: 49, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
42 24 0.49
43 24 0.49
44 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.26
Consensus pattern (42 bp):
TAAGACCACGTCTGGGACAGAGACATCGTATCTGATTACATG
Found at i:24653912 original size:37 final size:37
Alignment explanation
Indices: 24653862--24653933 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
24653852 CCAAAAATCG
*
24653862 AAGATAACGAAAATTATATGTCATCGGTTCCTTACCA
1 AAGATAAAGAAAATTATATGTCATCGGTTCCTTACCA
*
24653899 AAGATAAAGAAAATTATATGTCATTGGTTCCTTAC
1 AAGATAAAGAAAATTATATGTCATCGGTTCCTTAC
24653934 TCCAGTGCAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (37 bp):
AAGATAAAGAAAATTATATGTCATCGGTTCCTTACCA
Found at i:24660362 original size:26 final size:24
Alignment explanation
Indices: 24660333--24660380 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 24
24660323 CAGCTTGTAT
24660333 GAGCTCACTGATATTTTAGCTCATAA
1 GAGCTCACTG-T-TTTTAGCTCATAA
*
24660359 GAGCTTACTGTTTTTAGCTCAT
1 GAGCTCACTGTTTTTAGCTCAT
24660381 TGGAGCTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.52
25 1 0.05
26 9 0.43
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (24 bp):
GAGCTCACTGTTTTTAGCTCATAA
Found at i:24660378 original size:24 final size:24
Alignment explanation
Indices: 24660346--24660417 Score: 74
Period size: 24 Copynumber: 3.0 Consensus size: 24
24660336 CTCACTGATA
24660346 TTTTAGCTCATAAGAGCTTACTGT
1 TTTTAGCTCATAAGAGCTTACTGT
** **
24660370 TTTTAGCTCATTGGAGCTTAC-CA
1 TTTTAGCTCATAAGAGCTTACTGT
* * *
24660393 TTTCAGCTCGTATGAGCTTACTGT
1 TTTTAGCTCATAAGAGCTTACTGT
24660417 T
1 T
24660418 CAACTCAATA
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
23 17 0.46
24 20 0.54
ACGTcount: A:0.21, C:0.19, G:0.18, T:0.42
Consensus pattern (24 bp):
TTTTAGCTCATAAGAGCTTACTGT
Found at i:24660409 original size:23 final size:22
Alignment explanation
Indices: 24660374--24660454 Score: 76
Period size: 23 Copynumber: 3.6 Consensus size: 22
24660364 TACTGTTTTT
* *
24660374 AGCTCATTGGAGCTTACCATTTC
1 AGCTCAATAGAGCTTACC-TTTC
*
24660397 AGCTC-GTATGAGCTTA-CTGTTC
1 AGCTCAATA-GAGCTTACCT-TTC
*
24660419 AACTCAATAGAGCTTACCGTTTC
1 AGCTCAATAGAGCTTACC-TTTC
24660442 AGCTCAATAGAGC
1 AGCTCAATAGAGC
24660455 ATATTGTTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
21 1 0.02
22 16 0.33
23 30 0.62
24 1 0.02
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.31
Consensus pattern (22 bp):
AGCTCAATAGAGCTTACCTTTC
Found at i:24660431 original size:22 final size:22
Alignment explanation
Indices: 24660406--24660464 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 22
24660396 CAGCTCGTAT
24660406 GAGCTTACTGTTCAACTCAATA
1 GAGCTTACTGTTCAACTCAATA
* *
24660428 GAGCTTACCGTTTCAGCTCAATA
1 GAGCTTACTG-TTCAACTCAATA
* *
24660451 GAGCATATTGTTCA
1 GAGCTTACTGTTCA
24660465 TCAGCTCAAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
22 13 0.42
23 18 0.58
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (22 bp):
GAGCTTACTGTTCAACTCAATA
Found at i:24661942 original size:24 final size:24
Alignment explanation
Indices: 24661910--24661972 Score: 83
Period size: 24 Copynumber: 2.7 Consensus size: 24
24661900 AGGGGTGTTA
* *
24661910 CATAACAGGTAGCTTACAAAGAGC
1 CATATCAGGAAGCTTACAAAGAGC
*
24661934 CATATCAGGAAGCTCACAAAGAGC
1 CATATCAGGAAGCTTACAAAGAGC
*
24661958 C-TATCGGGAAGCTTA
1 CATATCAGGAAGCTTA
24661973 TTCGGGCTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 12 0.35
24 22 0.65
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (24 bp):
CATATCAGGAAGCTTACAAAGAGC
Found at i:24662076 original size:23 final size:23
Alignment explanation
Indices: 24662035--24662078 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
24662025 AGAACTTTTA
*
24662035 ATCGGGAAGCTCACGAAGAGCCT
1 ATCGGGAAGCTCACAAAGAGCCT
* *
24662058 ATCGGGGAGCTCATAAAGAGC
1 ATCGGGAAGCTCACAAAGAGC
24662079 AATGTAATGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.32, C:0.23, G:0.32, T:0.14
Consensus pattern (23 bp):
ATCGGGAAGCTCACAAAGAGCCT
Found at i:24662168 original size:27 final size:27
Alignment explanation
Indices: 24662138--24662221 Score: 104
Period size: 24 Copynumber: 3.3 Consensus size: 27
24662128 CACTATTGGA
24662138 AAGCTCACAAAGAGCCAATTTAACGGG
1 AAGCTCACAAAGAGCCAATTTAACGGG
*
24662165 AAGCTCAAAAAGAGCCAA-TT--CGGG
1 AAGCTCACAAAGAGCCAATTTAACGGG
* *
24662189 AAGCTCACGAAGAGCC-ATATAACGGG
1 AAGCTCACAAAGAGCCAATTTAACGGG
*
24662215 ATGCTCA
1 AAGCTCA
24662222 TAAGAGCTAA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
23 1 0.02
24 19 0.39
26 12 0.24
27 17 0.35
ACGTcount: A:0.39, C:0.23, G:0.24, T:0.14
Consensus pattern (27 bp):
AAGCTCACAAAGAGCCAATTTAACGGG
Found at i:24664059 original size:15 final size:15
Alignment explanation
Indices: 24664039--24664068 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
24664029 ATGATAAACT
24664039 TGAATCATTAATTAA
1 TGAATCATTAATTAA
24664054 TGAATCATTAATTAA
1 TGAATCATTAATTAA
24664069 CTTATTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (15 bp):
TGAATCATTAATTAA
Found at i:24664231 original size:20 final size:19
Alignment explanation
Indices: 24664194--24664241 Score: 78
Period size: 20 Copynumber: 2.5 Consensus size: 19
24664184 TTTTCATAAA
24664194 TATTTTGAATTTTAAAAAT
1 TATTTTGAATTTTAAAAAT
*
24664213 TATTTTGAATTTTTGAAAAT
1 TATTTTGAA-TTTTAAAAAT
24664233 TATTTTGAA
1 TATTTTGAA
24664242 ATTATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
19 9 0.33
20 18 0.67
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (19 bp):
TATTTTGAATTTTAAAAAT
Found at i:24664245 original size:11 final size:11
Alignment explanation
Indices: 24664209--24664249 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
24664199 TGAATTTTAA
24664209 AAATTATTTTG
1 AAATTATTTTG
24664220 -AA-T-TTTTG
1 AAATTATTTTG
24664228 AAAATTATTTTG
1 -AAATTATTTTG
24664240 AAATTATTTT
1 AAATTATTTT
24664250 TTGTAATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
8 5 0.19
9 1 0.04
10 4 0.15
11 11 0.42
12 5 0.19
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (11 bp):
AAATTATTTTG
Found at i:24666665 original size:31 final size:30
Alignment explanation
Indices: 24666625--24666682 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
24666615 AAATTTCAAA
24666625 ATTTAAAAAGTA-CAGGAACTAAATTTGCCC
1 ATTTAAAAAG-AGCAGGAACTAAATTTGCCC
* *
24666655 ATTTCAAAAAGAGTAGGGACTAAATTTG
1 ATTT-AAAAAGAGCAGGAACTAAATTTG
24666683 ATCAAATTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 5 0.21
31 19 0.79
ACGTcount: A:0.43, C:0.12, G:0.17, T:0.28
Consensus pattern (30 bp):
ATTTAAAAAGAGCAGGAACTAAATTTGCCC
Found at i:24667232 original size:17 final size:17
Alignment explanation
Indices: 24667192--24667250 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
24667182 AGAAAATCAT
* * *
24667192 TAAAATCATTAATATTT
1 TAAAAACATTAAAATTA
24667209 TAAAAACATTAAAATTA
1 TAAAAACATTAAAATTA
* *
24667226 TATAAACTTATAAAAATTA
1 TAAAAAC--ATTAAAATTA
24667245 TAAAAA
1 TAAAAA
24667251 AAAACCATAA
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
17 20 0.59
19 14 0.41
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAAAACATTAAAATTA
Found at i:24667341 original size:10 final size:10
Alignment explanation
Indices: 24667326--24667367 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
24667316 TGAATAAAAC
*
24667326 ATTTTTTAAA
1 ATTTTATAAA
24667336 ATTTT-TAAA
1 ATTTTATAAA
24667345 ATTTTATAAA
1 ATTTTATAAA
*
24667355 AATTTATAAA
1 ATTTTATAAA
24667365 ATT
1 ATT
24667368 CATAAAAACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
9 9 0.31
10 20 0.69
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (10 bp):
ATTTTATAAA
Found at i:24667349 original size:8 final size:9
Alignment explanation
Indices: 24667328--24667367 Score: 53
Period size: 9 Copynumber: 4.2 Consensus size: 9
24667318 AATAAAACAT
24667328 TTTTTAAAA
1 TTTTTAAAA
24667337 TTTTTAAAA
1 TTTTTAAAA
24667346 TTTTATAAAAA
1 TTTT-T-AAAA
*
24667357 TTTATAAAA
1 TTTTTAAAA
24667366 TT
1 TT
24667368 CATAAAAACT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 19 0.68
10 2 0.07
11 7 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:24667373 original size:29 final size:29
Alignment explanation
Indices: 24667348--24667403 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
24667338 TTTTAAAATT
*
24667348 TTATAAA-AATTTATAAAATTCATAAAAAC
1 TTATAAATAATATATAAAATT-ATAAAAAC
24667377 TTATAAATAATATA-AAAATTATAAAAA
1 TTATAAATAATATATAAAATTATAAAAA
24667404 AAAATCATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 7 0.28
29 13 0.52
30 5 0.20
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (29 bp):
TTATAAATAATATATAAAATTATAAAAAC
Found at i:24667375 original size:20 final size:20
Alignment explanation
Indices: 24667333--24667402 Score: 74
Period size: 19 Copynumber: 3.6 Consensus size: 20
24667323 AACATTTTTT
* *
24667333 AAAATTTTTAAAATTTTATA
1 AAAATTTATAAAATTATATA
*
24667353 AAAATTTATAAAATT-CATA
1 AAAATTTATAAAATTATATA
* *
24667372 AAAACTTAT-AAATAATATA
1 AAAATTTATAAAATTATATA
24667391 AAAA-TTATAAAA
1 AAAATTTATAAAA
24667403 AAAAATCATT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
18 8 0.19
19 21 0.49
20 14 0.33
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAATTTATAAAATTATATA
Found at i:24667390 original size:9 final size:9
Alignment explanation
Indices: 24667348--24667403 Score: 62
Period size: 9 Copynumber: 6.0 Consensus size: 9
24667338 TTTTAAAATT
24667348 TTATAAAAA
1 TTATAAAAA
24667357 TT-TATAAAA
1 TTATA-AAAA
24667366 TTCATAAAAA
1 TT-ATAAAAA
24667376 CTTATAAATAA
1 -TTATAAA-AA
24667387 -TATAAAAA
1 TTATAAAAA
24667395 TTATAAAAA
1 TTATAAAAA
24667404 AAAATCATTT
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
8 4 0.10
9 22 0.54
10 9 0.22
11 6 0.15
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (9 bp):
TTATAAAAA
Found at i:24668127 original size:10 final size:10
Alignment explanation
Indices: 24668077--24668232 Score: 63
Period size: 10 Copynumber: 15.7 Consensus size: 10
24668067 TGTTAGATAG
24668077 TTTATAAATTT
1 TTTAT-AATTT
* *
24668088 TGTATAA-TA
1 TTTATAATTT
*
24668097 TTTATAAGTT
1 TTTATAATTT
**
24668107 TTTAT-GCTT
1 TTTATAATTT
24668116 TTTATAATTT
1 TTTATAATTT
*
24668126 TTTATAAATT
1 TTTATAATTT
*
24668136 ATTA-AATTT
1 TTTATAATTT
* *
24668145 TATTAGATTTTT
1 T-TTATA-ATTT
*
24668157 TTTATAAATT
1 TTTATAATTT
* *
24668167 TTTAGAA-TA
1 TTTATAATTT
*
24668176 TTTATAAGTT
1 TTTATAATTT
* *
24668186 TGTATGATTCCT
1 TTTATAATT--T
24668198 TTTATAA-TT
1 TTTATAATTT
*
24668207 TTTATGATTT
1 TTTATAATTT
* *
24668217 TTT-TTATAT
1 TTTATAATTT
24668226 TTTATAA
1 TTTATAA
24668233 GTTTATATTA
Statistics
Matches: 106, Mismatches: 29, Indels: 21
0.68 0.19 0.13
Matches are distributed among these distances:
9 39 0.37
10 47 0.44
11 10 0.09
12 10 0.09
ACGTcount: A:0.31, C:0.02, G:0.06, T:0.61
Consensus pattern (10 bp):
TTTATAATTT
Found at i:24668181 original size:19 final size:19
Alignment explanation
Indices: 24668077--24668182 Score: 56
Period size: 19 Copynumber: 5.4 Consensus size: 19
24668067 TGTTAGATAG
*
24668077 TTTATAAATTTTGTATAATA
1 TTTATAAATTTT-TAGAATA
* * *
24668097 TTTATAAGTTTTTATG-CTT
1 TTTATAAATTTTTA-GAATA
* *
24668116 TTTATAATTTTTTATAA-A
1 TTTATAAATTTTTAGAATA
* *
24668134 -TTATTAAATTTTATTAGATTTTT
1 TTTA-TAAA-TTT-TTAGA--ATA
24668157 TTTATAAATTTTTAGAATA
1 TTTATAAATTTTTAGAATA
24668176 TTTATAA
1 TTTATAA
24668183 GTTTGTATGA
Statistics
Matches: 63, Mismatches: 14, Indels: 19
0.66 0.15 0.20
Matches are distributed among these distances:
17 3 0.05
18 3 0.05
19 27 0.43
20 15 0.24
21 5 0.08
22 3 0.05
23 4 0.06
24 3 0.05
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (19 bp):
TTTATAAATTTTTAGAATA
Found at i:24668201 original size:41 final size:40
Alignment explanation
Indices: 24668077--24668211 Score: 136
Period size: 41 Copynumber: 3.4 Consensus size: 40
24668067 TGTTAGATAG
*
24668077 TTTATAAATTTTGTATAATATTTATAAGTTTT-T-ATGCTT
1 TTTATAAATTTT-TATAATATTTATAAGTTTTATGATTCTT
* * *
24668116 TTTATAATTTTTTATAA-A-TTATTAAATTTTATTAGATTTTT
1 TTTATAAATTTTTATAATATTTA-TAAGTTTTA-T-GATTCTT
* *
24668157 TTTATAAATTTTTAGAATATTTATAAGTTTGTATGATTCCT
1 TTTATAAATTTTTATAATATTTATAAGTTT-TATGATTCTT
24668198 TTTAT-AATTTTTAT
1 TTTATAAATTTTTAT
24668212 GATTTTTTTT
Statistics
Matches: 78, Mismatches: 10, Indels: 15
0.76 0.10 0.15
Matches are distributed among these distances:
36 3 0.04
37 8 0.10
38 5 0.06
39 12 0.15
40 8 0.10
41 29 0.37
42 8 0.10
43 5 0.06
ACGTcount: A:0.32, C:0.02, G:0.06, T:0.60
Consensus pattern (40 bp):
TTTATAAATTTTTATAATATTTATAAGTTTTATGATTCTT
Found at i:24668214 original size:21 final size:21
Alignment explanation
Indices: 24668176--24668228 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
24668166 TTTTAGAATA
*
24668176 TTTATAAGTTTGTATGATTCCT
1 TTTATAA-TTTTTATGATTCCT
**
24668198 TTTATAATTTTTATGATTTTT
1 TTTATAATTTTTATGATTCCT
24668219 TTTAT-ATTTT
1 TTTATAATTTT
24668229 ATAAGTTTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 5 0.18
21 16 0.57
22 7 0.25
ACGTcount: A:0.23, C:0.04, G:0.08, T:0.66
Consensus pattern (21 bp):
TTTATAATTTTTATGATTCCT
Found at i:24672660 original size:48 final size:45
Alignment explanation
Indices: 24672569--24672683 Score: 126
Period size: 48 Copynumber: 2.5 Consensus size: 45
24672559 ATAACTTCGG
* * * **
24672569 TTATATATTGCACTTAGTGTGCAAGATTGAGATAGCTTTGACTAT
1 TTATATATTGCACTTAGTGTGCAAAATTAAGACAGCTACGACTAT
*
24672614 GTATATATATTGGCACTTAGTGTGCAAAATTAATACAGCTACGACTAT
1 -T-TATATATT-GCACTTAGTGTGCAAAATTAAGACAGCTACGACTAT
*
24672662 TTAT-T-TTGCACTTAGTATGCAA
1 TTATATATTGCACTTAGTGTGCAA
24672684 GTTTCCCGAG
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
43 14 0.23
44 2 0.03
45 1 0.02
46 4 0.07
47 9 0.15
48 30 0.50
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.38
Consensus pattern (45 bp):
TTATATATTGCACTTAGTGTGCAAAATTAAGACAGCTACGACTAT
Found at i:24682531 original size:700 final size:700
Alignment explanation
Indices: 24681192--24682591 Score: 2800
Period size: 700 Copynumber: 2.0 Consensus size: 700
24681182 AGGGCATCTC
24681192 AAGCATGCTAAGTATGAGGATGATCGAGAAGTGACGTGGCACCTTTCCTTCTCAGTTCCGTCTTG
1 AAGCATGCTAAGTATGAGGATGATCGAGAAGTGACGTGGCACCTTTCCTTCTCAGTTCCGTCTTG
24681257 CCCAATCCACCGAGAAGGAGGCCCCCGAGGACATTACTGATGATGTCCCTCCACATCACGAGGAC
66 CCCAATCCACCGAGAAGGAGGCCCCCGAGGACATTACTGATGATGTCCCTCCACATCACGAGGAC
24681322 CCACCGTCTCAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTC
131 CCACCGTCTCAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTC
24681387 TGAGCGCCTTACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTAC
196 TGAGCGCCTTACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTAC
24681452 AGCAGATTTGTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAA
261 AGCAGATTTGTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAA
24681517 GATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTAT
326 GATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTAT
24681582 TTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTAT
391 TTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTAT
24681647 TTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGA
456 TTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGA
24681712 AGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTG
521 AGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTG
24681777 CTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTA
586 CTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTA
24681842 TGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACG
651 TGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACG
24681892 AAGCATGCTAAGTATGAGGATGATCGAGAAGTGACGTGGCACCTTTCCTTCTCAGTTCCGTCTTG
1 AAGCATGCTAAGTATGAGGATGATCGAGAAGTGACGTGGCACCTTTCCTTCTCAGTTCCGTCTTG
24681957 CCCAATCCACCGAGAAGGAGGCCCCCGAGGACATTACTGATGATGTCCCTCCACATCACGAGGAC
66 CCCAATCCACCGAGAAGGAGGCCCCCGAGGACATTACTGATGATGTCCCTCCACATCACGAGGAC
24682022 CCACCGTCTCAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTC
131 CCACCGTCTCAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTC
24682087 TGAGCGCCTTACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTAC
196 TGAGCGCCTTACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTAC
24682152 AGCAGATTTGTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAA
261 AGCAGATTTGTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAA
24682217 GATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTAT
326 GATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTAT
24682282 TTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTAT
391 TTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTAT
24682347 TTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGA
456 TTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGA
24682412 AGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTG
521 AGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTG
24682477 CTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTA
586 CTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTA
24682542 TGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACG
651 TGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACG
24682592 CCAATTATTC
Statistics
Matches: 700, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
700 700 1.00
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.33
Consensus pattern (700 bp):
AAGCATGCTAAGTATGAGGATGATCGAGAAGTGACGTGGCACCTTTCCTTCTCAGTTCCGTCTTG
CCCAATCCACCGAGAAGGAGGCCCCCGAGGACATTACTGATGATGTCCCTCCACATCACGAGGAC
CCACCGTCTCAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTC
TGAGCGCCTTACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTAC
AGCAGATTTGTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAA
GATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTAT
TTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTAT
TTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGA
AGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTG
CTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTA
TGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACG
Found at i:24683702 original size:866 final size:866
Alignment explanation
Indices: 24682031--24683764 Score: 3459
Period size: 866 Copynumber: 2.0 Consensus size: 866
24682021 CCCACCGTCT
24682031 CAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTCTGAGCGCCT
1 CAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTCTGAGCGCCT
24682096 TACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTACAGCAGATTT
66 TACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTACAGCAGATTT
24682161 GTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAAGATGTTTAA
131 GTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAAGATGTTTAA
24682226 ATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTATTTTTCTTTA
196 ATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTATTTTTCTTTA
24682291 AGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTATTTCATATTG
261 AGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTATTTCATATTG
24682356 AGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGAAGAGCTGCT
326 AGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGAAGAGCTGCT
24682421 AAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTGCTATGTCTT
391 AAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTGCTATGTCTT
24682486 GCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTATGGACTAAT
456 GCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTATGGACTAAT
24682551 GAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCAATTATTCTCCAAAACTCCAGT
521 GAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCAATTATTCTCCAAAACTCCAGT
24682616 TCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATCTTATATTTATATTCTTT
586 TCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATCTTATATTTATATTCTTT
24682681 TCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGTGTGGGGGGTATTCATTT
651 TCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGTGTGGGGGGTATTCATTT
24682746 CACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCTCTCATATCATGTTTAGG
716 CACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCTCTCATATCATGTTTAGG
24682811 ATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAAACATAGGCATTTATGCA
781 ATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAAACATAGGCATTTATGCA
24682876 TTGATTGTTTAAACTTTAAGA
846 TTGATTGTTTAAACTTTAAGA
24682897 CAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTCTGAGCGCCT
1 CAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTCTGAGCGCCT
24682962 TACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTACAGCAGATTT
66 TACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTACAGCAGATTT
24683027 GTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAAGATGTTTAA
131 GTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAAGATGTTTAA
24683092 ATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTATTTTTCTTTA
196 ATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTATTTTTCTTTA
24683157 AGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTATTTCATATTG
261 AGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTATTTCATATTG
24683222 AGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGAAGAGCTGCT
326 AGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGAAGAGCTGCT
24683287 AAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTGCTATGTCTT
391 AAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTGCTATGTCTT
24683352 GCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTATGGACTAAT
456 GCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTATGGACTAAT
*
24683417 GAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCGATTATTCTCCAAAACTCCAGT
521 GAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCAATTATTCTCCAAAACTCCAGT
24683482 TCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATCTTATATTTATATTCTTT
586 TCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATCTTATATTTATATTCTTT
24683547 TCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGTGTGGGGGGTATTCATTT
651 TCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGTGTGGGGGGTATTCATTT
24683612 CACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCTCTCATATCATGTTTAGG
716 CACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCTCTCATATCATGTTTAGG
24683677 ATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAAACATAGGCATTTATGCA
781 ATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAAACATAGGCATTTATGCA
24683742 TTGATTGTTTAAACTTTAAGA
846 TTGATTGTTTAAACTTTAAGA
24683763 CA
1 CA
24683765 TTAAGGAATC
Statistics
Matches: 867, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
866 867 1.00
ACGTcount: A:0.28, C:0.22, G:0.13, T:0.37
Consensus pattern (866 bp):
CAACCACCACCTCCTTCTTGTCCAGTTCATGCGGCAGCTTCATACGCTGACATCTCTGAGCGCCT
TACCTGATTCGAGCAACAGTGTTTTCAGCGCTTCGATAACATTGATGCTACTCTACAGCAGATTT
GTCAGCACTTCCACATCTCATCGCCACGCCCACCTCGCGAACCATCTATTGATGAAGATGTTTAA
ATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTACTTTTTATTTTTCTTTA
AGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTTTCGGCTATTTCATATTG
AGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCACAGTTAGGAAGAGCTGCT
AAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTCCACGATTGCTATGTCTT
GCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCACAGGACTTATGGACTAAT
GAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCAATTATTCTCCAAAACTCCAGT
TCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATCTTATATTTATATTCTTT
TCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGTGTGGGGGGTATTCATTT
CACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCTCTCATATCATGTTTAGG
ATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAAACATAGGCATTTATGCA
TTGATTGTTTAAACTTTAAGA
Found at i:24684908 original size:948 final size:948
Alignment explanation
Indices: 24683075--24684970 Score: 3783
Period size: 948 Copynumber: 2.0 Consensus size: 948
24683065 GAACCATCTA
24683075 TTGATGAAGATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTA
1 TTGATGAAGATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTA
24683140 CTTTTTATTTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTT
66 CTTTTTATTTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTT
24683205 TCGGCTATTTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCAC
131 TCGGCTATTTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCAC
24683270 AGTTAGGAAGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTC
196 AGTTAGGAAGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTC
24683335 CACGATTGCTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCAC
261 CACGATTGCTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCAC
*
24683400 AGGACTTATGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCGATTA
326 AGGACTTATGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCAATTA
24683465 TTCTCCAAAACTCCAGTTCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATC
391 TTCTCCAAAACTCCAGTTCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATC
24683530 TTATATTTATATTCTTTTCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGT
456 TTATATTTATATTCTTTTCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGT
24683595 GTGGGGGGTATTCATTTCACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCT
521 GTGGGGGGTATTCATTTCACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCT
24683660 CTCATATCATGTTTAGGATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAA
586 CTCATATCATGTTTAGGATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAA
24683725 ACATAGGCATTTATGCATTGATTGTTTAAACTTTAAGACATTAAGGAATCAAGCATGATCAGTTG
651 ACATAGGCATTTATGCATTGATTGTTTAAACTTTAAGACATTAAGGAATCAAGCATGATCAGTTG
24683790 ATTTTTGAAGATTTAAAAAAAAAACTTTTAGGTTATTTCCCCAAGTTTAGGTATTACCTTGAGTT
716 ATTTTTGAAGATTTAAAAAAAAAACTTTTAGGTTATTTCCCCAAGTTTAGGTATTACCTTGAGTT
24683855 GGAATTCACAAGTTTAAATATCAAAAAGCCATAATTTTTGTGAGATCTTGAGCCTTTAGAGCATC
781 GGAATTCACAAGTTTAAATATCAAAAAGCCATAATTTTTGTGAGATCTTGAGCCTTTAGAGCATC
24683920 TATTATTTCTTTCATGCTCACTTTCCTTATGAGTGTGTCAGTATTAAATTGTTATTCTAGAACTT
846 TATTATTTCTTTCATGCTCACTTTCCTTATGAGTGTGTCAGTATTAAATTGTTATTCTAGAACTT
24683985 GCTGGATTATGCATGTCAAGACCACACCATTTGATTTG
911 GCTGGATTATGCATGTCAAGACCACACCATTTGATTTG
24684023 TTGATGAAGATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTA
1 TTGATGAAGATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTA
24684088 CTTTTTATTTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTT
66 CTTTTTATTTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTT
24684153 TCGGCTATTTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCAC
131 TCGGCTATTTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCAC
24684218 AGTTAGGAAGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTC
196 AGTTAGGAAGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTC
24684283 CACGATTGCTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCAC
261 CACGATTGCTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCAC
24684348 AGGACTTATGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCAATTA
326 AGGACTTATGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCAATTA
24684413 TTCTCCAAAACTCCAGTTCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATC
391 TTCTCCAAAACTCCAGTTCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATC
24684478 TTATATTTATATTCTTTTCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGT
456 TTATATTTATATTCTTTTCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGT
24684543 GTGGGGGGTATTCATTTCACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCT
521 GTGGGGGGTATTCATTTCACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCT
24684608 CTCATATCATGTTTAGGATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAA
586 CTCATATCATGTTTAGGATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAA
24684673 ACATAGGCATTTATGCATTGATTGTTTAAACTTTAAGACATTAAGGAATCAAGCATGATCAGTTG
651 ACATAGGCATTTATGCATTGATTGTTTAAACTTTAAGACATTAAGGAATCAAGCATGATCAGTTG
24684738 ATTTTTGAAGATTTAAAAAAAAAACTTTTAGGTTATTTCCCCAAGTTTAGGTATTACCTTGAGTT
716 ATTTTTGAAGATTTAAAAAAAAAACTTTTAGGTTATTTCCCCAAGTTTAGGTATTACCTTGAGTT
24684803 GGAATTCACAAGTTTAAATATCAAAAAGCCATAATTTTTGTGAGATCTTGAGCCTTTAGAGCATC
781 GGAATTCACAAGTTTAAATATCAAAAAGCCATAATTTTTGTGAGATCTTGAGCCTTTAGAGCATC
24684868 TATTATTTCTTTCATGCTCACTTTCCTTATGAGTGTGTCAGTATTAAATTGTTATTCTAGAACTT
846 TATTATTTCTTTCATGCTCACTTTCCTTATGAGTGTGTCAGTATTAAATTGTTATTCTAGAACTT
24684933 GCTGGATTATGCATGTCAAGACCACACCATTTGATTTG
911 GCTGGATTATGCATGTCAAGACCACACCATTTGATTTG
24684971 ATATGTCAAA
Statistics
Matches: 947, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
948 947 1.00
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40
Consensus pattern (948 bp):
TTGATGAAGATGTTTAAATTTTTATTATTATTTATTTTTATGTTTTGACTTTTATTTTAAAACTA
CTTTTTATTTTTCTTTAAGCTTGTTTTTATTAGTTTTTATAATTTCTATTTAACAATTTTTACTT
TCGGCTATTTCATATTGAGTAATTATGCTTCCTTATATTTCCTAAAAAATTCCTAATTCTGTCAC
AGTTAGGAAGAGCTGCTAAGCTCATCATCGCATAGGAACTAAAAACTCCACCGGGAAAGGTTCTC
CACGATTGCTATGTCTTGCTCGACCACGACCATAGTTACCACCATATATAATATTCTTTTGGCAC
AGGACTTATGGACTAATGAACCTCTACCACCACCGGAGTATCCTCCTCCACCTTCACGCCAATTA
TTCTCCAAAACTCCAGTTCAAGGAAATTCATTCATCACTCAGGAAGTTTGACTTCTCTCCCTATC
TTATATTTATATTCTTTTCTATATATCTATCTTTGTACATTGAGGGCAATGTACATCTTAAATGT
GTGGGGGGTATTCATTTCACAATAAAAAAAATCCCTAAATGATTGCCTTGTTCTCTTGAAAAGCT
CTCATATCATGTTTAGGATAAATTTTGATTAATTTATGACTTTTATTGATATATCTTGAATTAAA
ACATAGGCATTTATGCATTGATTGTTTAAACTTTAAGACATTAAGGAATCAAGCATGATCAGTTG
ATTTTTGAAGATTTAAAAAAAAAACTTTTAGGTTATTTCCCCAAGTTTAGGTATTACCTTGAGTT
GGAATTCACAAGTTTAAATATCAAAAAGCCATAATTTTTGTGAGATCTTGAGCCTTTAGAGCATC
TATTATTTCTTTCATGCTCACTTTCCTTATGAGTGTGTCAGTATTAAATTGTTATTCTAGAACTT
GCTGGATTATGCATGTCAAGACCACACCATTTGATTTG
Found at i:24689712 original size:27 final size:27
Alignment explanation
Indices: 24689690--24689873 Score: 278
Period size: 27 Copynumber: 6.8 Consensus size: 27
24689680 CAATTTGTAA
*
24689690 AATTACCGTTTTACCTTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
24689717 AATTACCGTTTTACCCTCGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
* *
24689744 AATTACCATTTTACCCTCGATTTATGG
1 AATTACCGTTTTACCCTCGATTTATAG
*
24689771 AATTACCGTTTTACCCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
* * *
24689798 AATTACCATTTTACGCTCGATTTACAG
1 AATTACCGTTTTACCCTCGATTTATAG
* * *
24689825 AATTACCATTTTACCTTTGATTTATAG
1 AATTACCGTTTTACCCTCGATTTATAG
24689852 AATTACCGTTTTACCCTCGATT
1 AATTACCGTTTTACCCTCGATT
24689874 GTCAAATTAC
Statistics
Matches: 142, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 142 1.00
ACGTcount: A:0.27, C:0.22, G:0.10, T:0.41
Consensus pattern (27 bp):
AATTACCGTTTTACCCTCGATTTATAG
Found at i:24689935 original size:27 final size:27
Alignment explanation
Indices: 24689905--24690055 Score: 180
Period size: 27 Copynumber: 5.6 Consensus size: 27
24689895 TGTAGGATAG
24689905 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
24689932 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* * * * *
24689959 AATTATCGAAATACCACTGGTTTGTGA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
24689986 AATTACCGAAATA-CCCTCAATTTGTAA
1 AATTACCAAAATACCCCT-AGTTTGTAA
* **
24690013 AATTACCAAAATACCCCTAATTTACAA
1 AATTACCAAAATACCCCTAGTTTGTAA
24690040 AATTA-CAGAAATACCC
1 AATTACCA-AAATACCC
24690056 TTGACTTTTA
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
26 5 0.05
27 99 0.92
28 4 0.04
ACGTcount: A:0.42, C:0.22, G:0.08, T:0.28
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:24689992 original size:81 final size:81
Alignment explanation
Indices: 24689905--24690054 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 81
24689895 TGTAGGATAG
* * **
24689905 AATTACCAAAATACCC-CTAGTTTGTAAAATTACCAAAATACCCCTAGTTTGTAAAATTATC-GA
1 AATTACCAAAATACCCTC-AATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTA-CAGA
24689968 AATACCACTGGTTTGTGA
64 AATACCACTGGTTTGTGA
*
24689986 AATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
1 AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
24690051 TACC
66 TACC
24690055 CTTGACTTTT
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
80 1 0.02
81 60 0.97
82 1 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (81 bp):
AATTACCAAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTACAAAATTACAGAAA
TACCACTGGTTTGTGA
Found at i:24690056 original size:54 final size:54
Alignment explanation
Indices: 24689905--24690112 Score: 163
Period size: 54 Copynumber: 3.8 Consensus size: 54
24689895 TGTAGGATAG
* * ** *
24689905 AATTACCAAAATACCCCTAGTTTGTAAAATTACCA-AAATACCC-CTAGTTTGTAA
1 AATTACCAAAATACCACTAATTTACAAAATTA-CAGAAATACCCTC-AATTTGTAA
* * ** *** *
24689959 AATTATCGAAATACCACTGGTTTGTGAAATTACCGAAATACCCTCAATTTGTAA
1 AATTACCAAAATACCACTAATTTACAAAATTACAGAAATACCCTCAATTTGTAA
* * *
24690013 AATTACCAAAATACCCCTAATTTACAAAATTACAGAAATACCCTTGACTTT-TAAAA
1 AATTACCAAAATACCACTAATTTACAAAATTACAGAAATACCC-TCAATTTGT--AA
* * *
24690069 AATTA-TAGAAATACCATTGATTTACAAAATTACAGAAATACCCT
1 AATTACCA-AAATACCACTAATTTACAAAATTACAGAAATACCCT
24690113 TGACTTTTAA
Statistics
Matches: 126, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
53 1 0.01
54 78 0.62
55 8 0.06
56 39 0.31
ACGTcount: A:0.43, C:0.20, G:0.08, T:0.30
Consensus pattern (54 bp):
AATTACCAAAATACCACTAATTTACAAAATTACAGAAATACCCTCAATTTGTAA
Found at i:24690068 original size:27 final size:28
Alignment explanation
Indices: 24689985--24690170 Score: 139
Period size: 27 Copynumber: 6.7 Consensus size: 28
24689975 CTGGTTTGTG
* * *
24689985 AAATTACCGAAATACCC-TCAATTTGTA
1 AAATTACAGAAATACCCTTGAATTTATA
* *
24690012 AAATTACCA-AAATACCCCT-AATTTACA
1 AAATTA-CAGAAATACCCTTGAATTTATA
* *
24690039 AAATTACAGAAATACCCTTGACTTTTAAA
1 AAATTACAGAAATACCCTTGA-ATTTATA
* * *
24690068 AAATTATAGAAATACCATTG-ATTTACA
1 AAATTACAGAAATACCCTTGAATTTATA
* *
24690095 AAATTACAGAAATACCCTTGACTTTTAAA
1 AAATTACAGAAATACCCTTGA-ATTTATA
* * * * *
24690124 AAATTATAAAAATACCATTG-GTTTACA
1 AAATTACAGAAATACCCTTGAATTTATA
* *
24690151 AAATTGCTGAAATACCCTTG
1 AAATTACAGAAATACCCTTG
24690171 GTTTGTAGAT
Statistics
Matches: 128, Mismatches: 24, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
26 2 0.02
27 78 0.61
28 3 0.02
29 45 0.35
ACGTcount: A:0.45, C:0.18, G:0.07, T:0.31
Consensus pattern (28 bp):
AAATTACAGAAATACCCTTGAATTTATA
Found at i:24690078 original size:29 final size:29
Alignment explanation
Indices: 24690033--24690170 Score: 149
Period size: 29 Copynumber: 4.9 Consensus size: 29
24690023 ATACCCCTAA
*
24690033 TTTACAAAATTACAGAAATACCCTTGACT
1 TTTAAAAAATTACAGAAATACCCTTGACT
* *
24690062 TTTAAAAAATTATAGAAATACCATTGA--
1 TTTAAAAAATTACAGAAATACCCTTGACT
*
24690089 TTTACAAAATTACAGAAATACCCTTGACT
1 TTTAAAAAATTACAGAAATACCCTTGACT
* * * *
24690118 TTTAAAAAATTATAAAAATACCATTG--G
1 TTTAAAAAATTACAGAAATACCCTTGACT
* * *
24690145 TTTACAAAATTGCTGAAATACCCTTG
1 TTTAAAAAATTACAGAAATACCCTTG
24690171 GTTTGTAGAT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
27 44 0.49
29 46 0.51
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (29 bp):
TTTAAAAAATTACAGAAATACCCTTGACT
Found at i:24690095 original size:56 final size:56
Alignment explanation
Indices: 24690032--24690170 Score: 242
Period size: 56 Copynumber: 2.5 Consensus size: 56
24690022 AATACCCCTA
*
24690032 ATTTACAAAATTACAGAAATACCCTTGACTTTTAAAAAATTATAGAAATACCATTG
1 ATTTACAAAATTACAGAAATACCCTTGACTTTTAAAAAATTATAAAAATACCATTG
24690088 ATTTACAAAATTACAGAAATACCCTTGACTTTTAAAAAATTATAAAAATACCATTG
1 ATTTACAAAATTACAGAAATACCCTTGACTTTTAAAAAATTATAAAAATACCATTG
* * *
24690144 GTTTACAAAATTGCTGAAATACCCTTG
1 ATTTACAAAATTACAGAAATACCCTTG
24690171 GTTTGTAGAT
Statistics
Matches: 79, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 79 1.00
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (56 bp):
ATTTACAAAATTACAGAAATACCCTTGACTTTTAAAAAATTATAAAAATACCATTG
Found at i:24691646 original size:37 final size:37
Alignment explanation
Indices: 24691596--24691674 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
24691586 TTATTACGAA
* * *
24691596 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
24691633 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
24691670 GTCTT
1 GTCTT
24691675 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:24691871 original size:47 final size:47
Alignment explanation
Indices: 24691793--24692203 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
24691783 CCCTTCGGGA
* * * * * *
24691793 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24691840 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24691887 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24691934 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24691981 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24692028 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24692075 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24692122 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24692169 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
24692204 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24693365 original size:18 final size:18
Alignment explanation
Indices: 24693342--24693383 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
24693332 CATATGCATT
24693342 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
24693360 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
24693378 TTTAAT
1 TTTAAT
24693384 ACAATTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (18 bp):
TTTAATCACATCAAGCAA
Found at i:24703434 original size:25 final size:25
Alignment explanation
Indices: 24703396--24703465 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
24703386 AGGAAGTGCT
* *
24703396 AAAAGGGCTCTGCCCCAGTTTACCG
1 AAAAGGGCTTTGCCCCAGTTTACCA
* *
24703421 AAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTTTGCCCCAGTTTACCA
24703446 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
24703466 ATTAAAAGAG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACCA
Found at i:24703478 original size:24 final size:24
Alignment explanation
Indices: 24703395--24703478 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
24703385 GAGGAAGTGC
* *
24703395 TAAAAGGGCTCTGCCCCAGTTTACC
1 TAAAAGGGCTTTGCCCCAGTTTA-T
* *
24703420 GAAAAGGGCTTTGCCCTAGTTTAT
1 TAAAAGGGCTTTGCCCCAGTTTAT
*
24703444 CAAAAAGGGCTTTGCCCCAG-TTAT
1 -TAAAAGGGCTTTGCCCCAGTTTAT
24703468 TAAAAGAGGCT
1 TAAAAG-GGCT
24703479 AGGCCTCTAG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
23 5 0.10
24 8 0.16
25 37 0.74
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.26
Consensus pattern (24 bp):
TAAAAGGGCTTTGCCCCAGTTTAT
Found at i:24703489 original size:50 final size:50
Alignment explanation
Indices: 24703396--24703490 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
24703386 AGGAAGTGCT
**
24703396 AAAAGGGCTCTGCCCCAGTTTACCGAAAAGGGCTTTGCCCTAGTTTATCA
1 AAAAGGGCTCTGCCCCAGTTTACCGAAAAGGGCTAGGCCCTAGTTTATCA
* **
24703446 AAAAGGGCTTTGCCCCAG-TTA-TTAAAAGAGGCTAGGCCTCTAGTT
1 AAAAGGGCTCTGCCCCAGTTTACCGAAAAG-GGCTAGGCC-CTAGTT
24703491 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 5 0.13
49 10 0.26
50 23 0.61
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (50 bp):
AAAAGGGCTCTGCCCCAGTTTACCGAAAAGGGCTAGGCCCTAGTTTATCA
Found at i:24703523 original size:14 final size:14
Alignment explanation
Indices: 24703506--24703532 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
24703496 ATAAAGCAGC
24703506 TATGCTGCCAGTGA
1 TATGCTGCCAGTGA
24703520 TATGCTGCCAGTG
1 TATGCTGCCAGTG
24703533 GTGTGTTGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.22, G:0.30, T:0.30
Consensus pattern (14 bp):
TATGCTGCCAGTGA
Found at i:24703684 original size:42 final size:42
Alignment explanation
Indices: 24703625--24703716 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
24703615 TAGTCTCCCC
24703625 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
*
24703667 AAATGGGCTTGCATACATTCATTGGCATTACATGTGATATTG
1 AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
24703709 AAATGGGC
1 AAATGGGC
24703717 CTAAGGGCAT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.30, C:0.14, G:0.22, T:0.34
Consensus pattern (42 bp):
AAATGGGCTTGCATACATTCATTGACATTACATGTGATATTG
Found at i:24707767 original size:48 final size:48
Alignment explanation
Indices: 24707696--24708077 Score: 351
Period size: 48 Copynumber: 8.0 Consensus size: 48
24707686 AGGGTGAATT
* * * * * *
24707696 GCCGATGCCATGTTCCAAACATGGTCTTGCACTATCTCACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAG
* * * * *
24707744 GCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAG
* ** *
24707792 ACCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTTCATAAT-ATG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCAAG
* * *
24707840 GCCGATGCCATGTCCCATACATGGTCTTACACTAGCGCACATATCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAG
* * * * * **
24707888 ACCGATGCCATGTCCTAGACATGGTCTTACATTGGCGCTCGCA-A-CATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT--AGCTCACATATCAAG
* * * * **
24707936 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAG
* * *
24707984 GCCGATGCCATGTCCCAAACATGGTCTTACACTGGCACACATA--AAGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAA--G
* * *
24708032 GCCGACGCCATGTTCCAGACATGGTCTTACACTAGCGCACATATCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCA
24708078 CCCAAATGTC
Statistics
Matches: 273, Mismatches: 51, Indels: 18
0.80 0.15 0.05
Matches are distributed among these distances:
46 6 0.02
47 3 0.01
48 256 0.94
49 2 0.01
50 6 0.02
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCAAG
Found at i:24707862 original size:96 final size:95
Alignment explanation
Indices: 24707743--24708077 Score: 393
Period size: 96 Copynumber: 3.5 Consensus size: 95
24707733 CACATGTCGA
* * *
24707743 GGCCGATGCCATATCCCAGACATGGTCTTACACTAGCTCTCGTCTCAATACCGATGCCATGTCCC
1 GGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTCCC
* **
24707808 AGACATGGTCTTACACTAGCTTTCATAATAT
66 AGACATGGTCTTACACTGGCACTCATAA-AT
* * * *
24707839 GGCCGATGCCATGTCCCATACATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTCCT
1 GGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTCCC
* * **
24707904 AGACATGGTCTTACATTGGCGCTCGCAACAT
66 AGACATGGTCTTACACTGGCACTCATAA-AT
* * * * * *
24707935 TGCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-GTGGCCGATGCCATGTCC
1 GGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAAT-ACCGATGCCATGTCC
* *
24707999 CAAACATGGTCTTACACTGGCACACATAAAGT
65 CAGACATGGTCTTACACTGGCACTCATAAA-T
* * * *
24708031 GGCCGACGCCATGTTCCAGACATGGTCTTACACTAGCGCACATATCA
1 GGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA
24708078 CCCAAATGTC
Statistics
Matches: 201, Mismatches: 35, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
95 2 0.01
96 199 0.99
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.26
Consensus pattern (95 bp):
GGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATACCGATGCCATGTCCC
AGACATGGTCTTACACTGGCACTCATAAAT
Found at i:24707958 original size:144 final size:143
Alignment explanation
Indices: 24707696--24708069 Score: 441
Period size: 144 Copynumber: 2.6 Consensus size: 143
24707686 AGGGTGAATT
* * * * * * * *
24707696 GCCGATGCCATGTTCCAAACATGGTCTTGCACTATCTCACATGTCGAGGCCGATGCCATATCCCA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGT-CCA
* * *
24707761 GACATGGTCTTACACTAGCTCTCGTCTCAATACCGATGCCATGTCCCAGACATGGTCTTACACTA
65 GACATGGTCTTACACTAGCGCTCGTCACAATACCGATGCCATGTCCCAAACATGGTCTTACACTA
*
24707826 GCTTTCATAAT-ATG
130 GCTCTCAT-ATCATG
* *
24707840 GCCGATGCCATGTCCCATACATGGTCTTACACTAGCGCACATATCAATACCGATGCCATGTCCTA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCC-A
* * * * *
24707905 GACATGGTCTTACATTGGCGCTCG-CAACATTGCCGATGCCATGTTCCAAACATGGTCTTACACT
65 GACATGGTCTTACACTAGCGCTCGTC-ACAATACCGATGCCATGTCCCAAACATGGTCTTACACT
* *
24707969 GGCTCTCATATCGTG
129 AGCTCTCATATCATG
* * *
24707984 GCCGATGCCATGTCCCAAACATGGTCTTACACT-G-GCACACATAAAGTGGCCGACGCCATGTTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAA-T-GCCGATGCCATG-TC
24708047 CAGACATGGTCTTACACTAGCGC
63 CAGACATGGTCTTACACTAGCGC
24708070 ACATATCACC
Statistics
Matches: 196, Mismatches: 28, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
142 9 0.05
143 7 0.04
144 177 0.90
145 3 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (143 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCGCACATATCAATGCCGATGCCATGTCCAG
ACATGGTCTTACACTAGCGCTCGTCACAATACCGATGCCATGTCCCAAACATGGTCTTACACTAG
CTCTCATATCATG
Found at i:24709440 original size:44 final size:44
Alignment explanation
Indices: 24709377--24709464 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 44
24709367 TAAACAAGTA
* *
24709377 AGTGTGGTGTCTCATATCACCTTATTCAAGCATGGCCATGCATT
1 AGTGTGATATCTCATATCACCTTATTCAAGCATGGCCATGCATT
24709421 AGTGTGATATCTCATATCACCTTATTCAAGCATGGCCATGCATT
1 AGTGTGATATCTCATATCACCTTATTCAAGCATGGCCATGCATT
24709465 TCTAGTCTCC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.25, C:0.23, G:0.18, T:0.34
Consensus pattern (44 bp):
AGTGTGATATCTCATATCACCTTATTCAAGCATGGCCATGCATT
Found at i:24714054 original size:19 final size:19
Alignment explanation
Indices: 24714030--24714086 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
24714020 AATTAGAATA
24714030 AGAATCAGTATCAGGTAAC
1 AGAATCAGTATCAGGTAAC
*
24714049 AGAATCA--A--A---ATC
1 AGAATCAGTATCAGGTAAC
24714061 AGAATCAGTATCAGGTAAC
1 AGAATCAGTATCAGGTAAC
24714080 AGAATCA
1 AGAATCA
24714087 AAAATCAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 14
0.64 0.04 0.31
Matches are distributed among these distances:
12 9 0.31
14 1 0.03
15 1 0.03
16 1 0.03
17 1 0.03
19 16 0.55
ACGTcount: A:0.47, C:0.16, G:0.18, T:0.19
Consensus pattern (19 bp):
AGAATCAGTATCAGGTAAC
Found at i:24714065 original size:31 final size:32
Alignment explanation
Indices: 24714030--24714096 Score: 127
Period size: 31 Copynumber: 2.1 Consensus size: 32
24714020 AATTAGAATA
24714030 AGAATCAGTATCAGGTAACAGAATC-AAAATC
1 AGAATCAGTATCAGGTAACAGAATCAAAAATC
24714061 AGAATCAGTATCAGGTAACAGAATCAAAAATC
1 AGAATCAGTATCAGGTAACAGAATCAAAAATC
24714093 AGAA
1 AGAA
24714097 AGTGAATGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 25 0.71
32 10 0.29
ACGTcount: A:0.51, C:0.15, G:0.16, T:0.18
Consensus pattern (32 bp):
AGAATCAGTATCAGGTAACAGAATCAAAAATC
Found at i:24714297 original size:26 final size:27
Alignment explanation
Indices: 24714234--24714307 Score: 105
Period size: 27 Copynumber: 2.8 Consensus size: 27
24714224 GCTCAGTTAT
* *
24714234 CAGATATTGTGACAGAGTCACCAGATA
1 CAGATATTGTGGCAGAGCCACCAGATA
24714261 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
* *
24714287 CAGATAATGTGGCAAAGCCAC
1 CAGATATTGTGGCAGAGCCAC
24714308 TTAACAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
26 20 0.47
27 23 0.53
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:24714971 original size:27 final size:27
Alignment explanation
Indices: 24714942--24715156 Score: 252
Period size: 27 Copynumber: 8.0 Consensus size: 27
24714932 GGGCAAAATG
* * * * *
24714942 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
24714969 GTAATTCTACCCTACAGGGGTATTCCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
24714996 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
24715023 ATAATTCTACCTTACAGGGGTATTTCA
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
24715050 GTAATTCTACCTTACAGGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCA
*
24715077 GTAATTCTACCCTACAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCA
* * *
24715104 GTAATTCTACTCTGCAGGGGTGTTTC-
1 GTAATTCTACCCTACAGGGGTATTTCA
* *
24715130 GATTATTCTACCCTACAGGGTTATTTC
1 G-TAATTCTACCCTACAGGGGTATTTC
24715157 GATATTTTAT
Statistics
Matches: 160, Mismatches: 27, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.01
27 159 0.99
ACGTcount: A:0.24, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
GTAATTCTACCCTACAGGGGTATTTCA
Found at i:24715206 original size:27 final size:27
Alignment explanation
Indices: 24715187--24715381 Score: 239
Period size: 27 Copynumber: 7.2 Consensus size: 27
24715177 TATTTCGATC
* *
24715187 ATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
*
24715214 ATTTTACAAGCCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
* *
24715241 ATTTTACAAACTAGGGGTATTTTAGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
24715268 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
* *
24715295 ATTTTACAAACCAGGGATATTTTAGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
** *
24715322 ATTTTACTGATC-GAGGGTATTTTGGTA
1 ATTTTACAAACCAG-GGGTATTTTGGTA
** * *
24715349 ATTTTGTAAACCAAGGGTATTTTAGTA
1 ATTTTACAAACCAGGGGTATTTTGGTA
*
24715376 AATTTA
1 ATTTTA
24715382 TAAATTGAGG
Statistics
Matches: 142, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
26 1 0.01
27 141 0.99
ACGTcount: A:0.31, C:0.09, G:0.21, T:0.39
Consensus pattern (27 bp):
ATTTTACAAACCAGGGGTATTTTGGTA
Found at i:24715385 original size:27 final size:27
Alignment explanation
Indices: 24715160--24715381 Score: 212
Period size: 27 Copynumber: 8.2 Consensus size: 27
24715150 TTATTTCGAT
* * * * * *
24715160 ATTTTATAAACCGAGAGTATTTCGATC
1 ATTTTACAAACCAAGGGTATTTTGGTA
* * *
24715187 ATTTCACAAATCAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* *
24715214 ATTTTACAAGCCAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
* * *
24715241 ATTTTACAAACTAGGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
*
24715268 ATTTTACAAACCAGGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
*
24715295 ATTTTACAAACC-AGGGATATTTTAGTA
1 ATTTTACAAACCAAGGG-TATTTTGGTA
** * *
24715322 ATTTTACTGATCGAGGGTATTTTGGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
** *
24715349 ATTTTGTAAACCAAGGGTATTTTAGTA
1 ATTTTACAAACCAAGGGTATTTTGGTA
*
24715376 AATTTA
1 ATTTTA
24715382 TAAATTGAGG
Statistics
Matches: 161, Mismatches: 32, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 3 0.02
27 154 0.96
28 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (27 bp):
ATTTTACAAACCAAGGGTATTTTGGTA
Found at i:24715403 original size:27 final size:27
Alignment explanation
Indices: 24715376--24715664 Score: 355
Period size: 27 Copynumber: 10.7 Consensus size: 27
24715366 TATTTTAGTA
* *
24715376 AATT-TATAAATTGAGGGTAAAACGGT
1 AATTCTATAAATCGAGGGTAAAATGGT
* * *
24715402 AATTCTGTAAATTGAGGGTAAAATGAT
1 AATTCTATAAATCGAGGGTAAAATGGT
* * * *
24715429 AATTTTGTAAATCGAGAGTAAAATGAT
1 AATTCTATAAATCGAGGGTAAAATGGT
*
24715456 AATTCTATAAATTGAGGGTAAAATGGT
1 AATTCTATAAATCGAGGGTAAAATGGT
24715483 AATTCTATAAATCGAGGGTAAAATGGT
1 AATTCTATAAATCGAGGGTAAAATGGT
*
24715510 AATTCTTTAAATCGAGGGTAAAATGGT
1 AATTCTATAAATCGAGGGTAAAATGGT
*
24715537 AATTCTATAAATCGAGGGTAAAACGGT
1 AATTCTATAAATCGAGGGTAAAATGGT
*
24715564 AATTCTGTAAATCGAGGGTAAAATGGT
1 AATTCTATAAATCGAGGGTAAAATGGT
* ** ***
24715591 AATTTTATAAATCGATAGTAAAACAAT
1 AATTCTATAAATCGAGGGTAAAATGGT
* * **
24715618 AATTCTATAAATCAAGGGTATAACAGT
1 AATTCTATAAATCGAGGGTAAAATGGT
*
24715645 AATTCTATAAATCGATGGTA
1 AATTCTATAAATCGAGGGTA
24715665 CTTTGGAAAT
Statistics
Matches: 230, Mismatches: 32, Indels: 1
0.87 0.12 0.00
Matches are distributed among these distances:
26 4 0.02
27 226 0.98
ACGTcount: A:0.42, C:0.07, G:0.20, T:0.31
Consensus pattern (27 bp):
AATTCTATAAATCGAGGGTAAAATGGT
Found at i:24715419 original size:81 final size:81
Alignment explanation
Indices: 24715344--24715691 Score: 364
Period size: 81 Copynumber: 4.3 Consensus size: 81
24715334 GAGGGTATTT
* * ***
24715344 TGGTAATTTTGTAAACCAAGGGTATTTTAGTAAATT-TATAAATTGAGGGTAAAACGGTAATTCT
1 TGGTAATTTTGTAAATCGAGGGTAAAAT-GTAAATTCTATAAATTGAGGGTAAAACGGTAATTCT
*
24715408 GTAAATTGAGGGTAAAA
65 GTAAATCGAGGGTAAAA
* * *
24715425 TGATAATTTTGTAAATCGAGAGTAAAATG-ATAATTCTATAAATTGAGGGTAAAATGGTAATTCT
1 TGGTAATTTTGTAAATCGAGGGTAAAATGTA-AATTCTATAAATTGAGGGTAAAACGGTAATTCT
*
24715489 ATAAATCGAGGGTAAAA
65 GTAAATCGAGGGTAAAA
*
24715506 TGGTAATTCTT-TAAATCGAGGGTAAAATGGT-AATTCTATAAATCGAGGGTAAAACGGTAATTC
1 TGGTAATT-TTGTAAATCGAGGGTAAAAT-GTAAATTCTATAAATTGAGGGTAAAACGGTAATTC
24715569 TGTAAATCGAGGGTAAAA
64 TGTAAATCGAGGGTAAAA
* ** ** ** * *
24715587 TGGTAATTTTATAAATCGATAGTAAAA-CAATAATTCTATAAATCAAGGGTATAACAGTAATTCT
1 TGGTAATTTTGTAAATCGAGGGTAAAATGTA-AATTCTATAAATTGAGGGTAAAACGGTAATTCT
* * ***
24715651 ATAAATCGATGGTACTT
65 GTAAATCGAGGGTAAAA
* * *
24715668 TGGAAATTTTGCAAGTCGAGGGTA
1 TGGTAATTTTGTAAATCGAGGGTA
24715692 TTTCTGCAAT
Statistics
Matches: 226, Mismatches: 33, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
79 1 0.00
80 7 0.03
81 215 0.95
82 3 0.01
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (81 bp):
TGGTAATTTTGTAAATCGAGGGTAAAATGTAAATTCTATAAATTGAGGGTAAAACGGTAATTCTG
TAAATCGAGGGTAAAA
Found at i:24715702 original size:27 final size:27
Alignment explanation
Indices: 24715617--24715837 Score: 153
Period size: 27 Copynumber: 8.2 Consensus size: 27
24715607 AGTAAAACAA
* * * **
24715617 TAATTCTATAAATCAAGGGTATAACAG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * * *
24715644 TAATTCTATAAATCGATGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTCAG
* * * *
24715671 AAATTTTGCAAGTCGAGGGTATTTCTG
1 TAATTTTACAAATCGAGGGTATTTCAG
* *
24715698 CAATTTTACAAATCGAGGGCATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
* *
24715725 TAATTTTGCAAA-CTGAGGGTATTTCGG
1 TAATTTTACAAATC-GAGGGTATTTCAG
* **
24715752 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAATCGAGGGTATTTCAG
* * *
24715779 TAATTTTATAAATCGGGGGTACTTT-GG
1 TAATTTTACAAATCGAGGGTA-TTTCAG
* * *
24715806 TAATTTCACAACT-GGGGGTATTTCAG
1 TAATTTTACAAATCGAGGGTATTTCAG
24715832 TAATTT
1 TAATTT
24715838 GGTAAACTAG
Statistics
Matches: 157, Mismatches: 31, Indels: 13
0.78 0.15 0.06
Matches are distributed among these distances:
25 3 0.02
26 18 0.11
27 131 0.83
28 5 0.03
ACGTcount: A:0.31, C:0.11, G:0.21, T:0.37
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGGTATTTCAG
Found at i:24715775 original size:81 final size:80
Alignment explanation
Indices: 24715672--24715837 Score: 183
Period size: 81 Copynumber: 2.1 Consensus size: 80
24715662 GTACTTTGGA
* * * *
24715672 AATTTTGCAAGTCGAGGGTATTTCTGCAATTTTACAAATCGAGGGCA-TTTCAGTAATTTTGCA-
1 AATTTTACAAATCGAGGATATTTCGGCAATTTTACAAATCGAGGGCACTTT-AGTAA-TTT-CAC
*
24715735 AACTGAGGGTATTTCGGT
63 AACTGAGGGTATTTCAGT
* * * * * *
24715753 AATTTTACAAATCGAGGATATTTGGGTAATTTTATAAATCGGGGGTACTTTGGTAATTTCACAAC
1 AATTTTACAAATCGAGGATATTTCGGCAATTTTACAAATCGAGGGCACTTTAGTAATTTCACAAC
*
24715818 TGGGGGTATTTCAGT
66 TGAGGGTATTTCAGT
24715833 AATTT
1 AATTT
24715838 GGTAAACTAG
Statistics
Matches: 71, Mismatches: 12, Indels: 5
0.81 0.14 0.06
Matches are distributed among these distances:
79 2 0.03
80 24 0.34
81 42 0.59
82 3 0.04
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.37
Consensus pattern (80 bp):
AATTTTACAAATCGAGGATATTTCGGCAATTTTACAAATCGAGGGCACTTTAGTAATTTCACAAC
TGAGGGTATTTCAGT
Found at i:24716784 original size:18 final size:18
Alignment explanation
Indices: 24716758--24716796 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
24716748 ACGGTACCCC
* *
24716758 CTTCTTATGTGCATGACA
1 CTTCCTATGCGCATGACA
24716776 CTTCCTATGCGCATGACA
1 CTTCCTATGCGCATGACA
24716794 CTT
1 CTT
24716797 TCTCTGATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (18 bp):
CTTCCTATGCGCATGACA
Found at i:24720408 original size:40 final size:40
Alignment explanation
Indices: 24720353--24720623 Score: 404
Period size: 40 Copynumber: 6.8 Consensus size: 40
24720343 GGATATAGCT
* * *
24720353 ACTCGCTCAAATGCCTTCGGGACATAGCCCGG-TTAGAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATT-TAGTA
*
24720393 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
24720433 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
24720473 ACTCGCACAAATGCCTTCGGGACTT-GCCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAG-CCCGGATTTAGTA
*
24720513 ACTCGCACAATTGCCTTCGGGACTTAGCCCGGATTTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
** *
24720553 ACTCGCACAAATGCCTTCGGGACTT-GCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
* * *
24720592 ACTAGCGCAGATGCCTTCGGGACTTAGCCCGG
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG
24720624 TTATCATCCA
Statistics
Matches: 214, Mismatches: 13, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
39 34 0.16
40 177 0.83
41 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.24, T:0.24
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATTTAGTA
Found at i:24728581 original size:40 final size:40
Alignment explanation
Indices: 24728518--24728884 Score: 616
Period size: 40 Copynumber: 9.2 Consensus size: 40
24728508 CCTTCGGAGT
* *
24728518 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* * *
24728557 TTAGCCCGGTTATAGTAACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
24728597 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
24728637 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
24728677 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
24728717 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
24728757 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
24728797 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
24728837 TT-GCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
24728876 TTAGCCCGG
1 TTAGCCCGG
24728885 TTATCATCCA
Statistics
Matches: 317, Mismatches: 7, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
38 1 0.00
39 39 0.12
40 277 0.87
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:24735473 original size:12 final size:12
Alignment explanation
Indices: 24735442--24735476 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
24735432 CCCACGATTT
*
24735442 TCTCCTAAAATC
1 TCTCCTCAAATC
24735454 TC-CCTCAAATC
1 TCTCCTCAAATC
24735465 TCTCCTCAAATC
1 TCTCCTCAAATC
24735477 CCTCAACTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (12 bp):
TCTCCTCAAATC
Found at i:24737588 original size:27 final size:27
Alignment explanation
Indices: 24737558--24737637 Score: 97
Period size: 27 Copynumber: 3.0 Consensus size: 27
24737548 ATATCATATT
* *
24737558 TGTAGGCTAGTATTACTGAAATACCCC
1 TGTAGGATAGAATTACTGAAATACCCC
* * *
24737585 TGTACGATAGAATTACTGAAATGCCTC
1 TGTAGGATAGAATTACTGAAATACCCC
* *
24737612 TGTAGGGTAGAATTGCTGAAATACCC
1 TGTAGGATAGAATTACTGAAATACCC
24737638 TTAGTTTACA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (27 bp):
TGTAGGATAGAATTACTGAAATACCCC
Found at i:24737841 original size:107 final size:107
Alignment explanation
Indices: 24737657--24737907 Score: 278
Period size: 107 Copynumber: 2.3 Consensus size: 107
24737647 AAAATTACTG
* * * *
24737657 AATACCCTCG-ATAGTAAAATTACCA-AAATACCCCTAGTTTGTAAAATTACCAAAAATACCCTT
1 AATACCCTTGAAT-GTAAAATTA-CAGAAATACCCTTAATTTGTAAAATTACC-AAAATACCCCT
* * * * *
24737720 GATTTGTAAAATTACCGAAATACC-CTCATCCTGTAAAATTATCGA
63 AATTTGGAAAATTACCGAAATACCACTAAT-CTGGAAAATTATAGA
*
24737765 AATACCCTTGACATGTAAAATTACTGAAATACCCTTAATTTGTAAAATTACC-AAATACCCCTAA
1 AATACCCTTGA-ATGTAAAATTACAGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAA
* * *
24737829 TTTGGAATATTACCGAAATACCATTAATTTGGAAAATTATAGA
65 TTTGGAAAATTACCGAAATACCACTAATCTGGAAAATTATAGA
*
24737872 AATACCCTTG-ATTTACAATATTACAGAAATACCCTT
1 AATACCCTTGAATGTA-AA-ATTACAGAAATACCCTT
24737908 GACTTTCAAA
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
105 4 0.03
106 2 0.02
107 68 0.56
108 13 0.11
109 33 0.27
110 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (107 bp):
AATACCCTTGAATGTAAAATTACAGAAATACCCTTAATTTGTAAAATTACCAAAATACCCCTAAT
TTGGAAAATTACCGAAATACCACTAATCTGGAAAATTATAGA
Found at i:24737885 original size:27 final size:27
Alignment explanation
Indices: 24737629--24737970 Score: 257
Period size: 27 Copynumber: 12.7 Consensus size: 27
24737619 TAGAATTGCT
** *
24737629 GAAATACCCTT-AGTTTACAAAATTACT
1 GAAATACCCTTGA-TTTGTAAAATTACC
* *
24737656 G-AATACCCTCGA-TAGTAAAATTACC
1 GAAATACCCTTGATTTGTAAAATTACC
* *
24737681 AAAATACCCCT-AGTTTGTAAAATTACC
1 GAAATACCCTTGA-TTTGTAAAATTACC
*
24737708 AAAAATACCCTTGATTTGTAAAATTACC
1 -GAAATACCCTTGATTTGTAAAATTACC
* * *
24737736 GAAATACCC-TCATCCTGTAAAATTATC
1 GAAATACCCTTGAT-TTGTAAAATTACC
** *
24737763 GAAATACCCTTGACATGTAAAATTACT
1 GAAATACCCTTGATTTGTAAAATTACC
*
24737790 GAAATACCCTTAATTTGTAAAATTACC
1 GAAATACCCTTGATTTGTAAAATTACC
* * * *
24737817 -AAATACCCCTAATTTGGAATATTACC
1 GAAATACCCTTGATTTGTAAAATTACC
* * * **
24737843 GAAATACCATTAATTTGGAAAATTATA
1 GAAATACCCTTGATTTGTAAAATTACC
** * *
24737870 GAAATACCCTTGATTTACAATATTACA
1 GAAATACCCTTGATTTGTAAAATTACC
**
24737897 GAAATACCCTTGACTTTCAAAAATTA-C
1 GAAATACCCTTGA-TTTGTAAAATTACC
* * * * *
24737924 AAAACTACCATTGGTTTGCAAAATTACT
1 GAAA-TACCCTTGATTTGTAAAATTACC
*
24737952 GAAATACCCTTGGTTTGTA
1 GAAATACCCTTGATTTGTA
24737971 GATTTACCAA
Statistics
Matches: 253, Mismatches: 50, Indels: 24
0.77 0.15 0.07
Matches are distributed among these distances:
25 10 0.04
26 41 0.16
27 156 0.62
28 45 0.18
29 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.09, T:0.31
Consensus pattern (27 bp):
GAAATACCCTTGATTTGTAAAATTACC
Done.