Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 80 of 186
Found at i:25919913 original size:10 final size:10
Alignment explanation
Indices: 25919886--25919915 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
25919876 ACAGACAGAT
25919886 AATTTAGAAA
1 AATTTAGAAA
25919896 ATATTTAGAAA
1 A-ATTTAGAAA
25919907 AATTTAGAA
1 AATTTAGAA
25919916 TACTTACAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.57, C:0.00, G:0.10, T:0.33
Consensus pattern (10 bp):
AATTTAGAAA
Found at i:25920111 original size:38 final size:39
Alignment explanation
Indices: 25920052--25920128 Score: 120
Period size: 38 Copynumber: 2.0 Consensus size: 39
25920042 ACAGCCGAGT
* *
25920052 TGTTGCAACCTAGGCTTTGATACCACTAAATGTAGCACC
1 TGTTGCAACCTAGGCTCTGATACCACTAAATGTAACACC
*
25920091 TGTTGCAACC-AGGCTCTGATACCACTAACTGTAACACC
1 TGTTGCAACCTAGGCTCTGATACCACTAAATGTAACACC
25920129 CCATACCCGG
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
38 25 0.71
39 10 0.29
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (39 bp):
TGTTGCAACCTAGGCTCTGATACCACTAAATGTAACACC
Found at i:25922803 original size:26 final size:26
Alignment explanation
Indices: 25922772--25922879 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
25922762 TGAAATGCCC
*
25922772 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
25922798 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
25922824 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
25922850 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
25922876 ATCA
1 ATCA
25922880 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:25925102 original size:46 final size:48
Alignment explanation
Indices: 25924978--25925107 Score: 148
Period size: 46 Copynumber: 2.8 Consensus size: 48
25924968 TGTAACCCGC
*
25924978 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA--CCTAGTTGCAT
* *
25925028 CTC-T---CGAGCTCGGACTCAACTCAACGAGTTCGGA-C-A-TTCGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTT-GCAT
25925071 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
25925108 TGCTCAACCA
Statistics
Matches: 69, Mismatches: 5, Indels: 16
0.77 0.06 0.18
Matches are distributed among these distances:
42 3 0.04
43 7 0.10
44 1 0.01
46 28 0.41
47 27 0.39
50 2 0.03
51 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (48 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACCTAGTTGCAT
Found at i:25925126 original size:46 final size:45
Alignment explanation
Indices: 25924983--25925126 Score: 127
Period size: 46 Copynumber: 3.1 Consensus size: 45
25924973 CCCGCCCATA
* *
25924983 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTGCATCTCT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCC-A--TCCATC-CT
* *
25925032 --CGAGCTCGGACTCAACTCAACGAGTTCGGA---CATTCGCATCCAT
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCA-TC-CATCC-T
*
25925075 AAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATCCT
1 -AGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CATCCATCCT
25925122 AGTGA
1 AGTGA
25925127 CATGTCACTT
Statistics
Matches: 79, Mismatches: 7, Indels: 21
0.74 0.07 0.20
Matches are distributed among these distances:
42 3 0.04
43 6 0.08
44 1 0.01
46 33 0.42
47 28 0.35
48 5 0.06
49 1 0.01
50 2 0.03
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCATCCATCCT
Found at i:25925750 original size:67 final size:67
Alignment explanation
Indices: 25925662--25925795 Score: 259
Period size: 67 Copynumber: 2.0 Consensus size: 67
25925652 ATAGACTTAG
25925662 AAATTGATAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAGCAATTTCATACTAGAAAC
1 AAATTGATAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAGCAATTTCATACTAGAAAC
25925727 TT
66 TT
*
25925729 AAATTGGTAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAGCAATTTCATACTAGAAAC
1 AAATTGATAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAGCAATTTCATACTAGAAAC
25925794 TT
66 TT
25925796 CTAGAATGCA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 66 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (67 bp):
AAATTGATAAAATTTCTATTTAAGACCTCCTAATTAATATTTCAAAGCAATTTCATACTAGAAAC
TT
Found at i:25929797 original size:12 final size:12
Alignment explanation
Indices: 25929780--25929804 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25929770 TGTTTTAATG
25929780 AATTTAATATTT
1 AATTTAATATTT
25929792 AATTTAATATTT
1 AATTTAATATTT
25929804 A
1 A
25929805 TCTAGATATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
AATTTAATATTT
Found at i:25929873 original size:72 final size:73
Alignment explanation
Indices: 25929790--25929945 Score: 260
Period size: 72 Copynumber: 2.2 Consensus size: 73
25929780 AATTTAATAT
*
25929790 TTAATTTAATATTTATCTAGATATTAATATGAGATATTAAATTAAATTAAATATTTATTTA-ATA
1 TTAATTTAATATTTATCTAGATATTAATATGAGATATTAAATTAAATTAAATATTTATCTAGATA
*
25929854 GTATTTTA
66 ATATTTTA
* * *
25929862 TTAATTTAATATTTATCTAGATATTAATATGATATATTAAATTTAATTTAATATTTATCTAGATA
1 TTAATTTAATATTTATCTAGATATTAATATGAGATATTAAATTAAATTAAATATTTATCTAGATA
25929927 ATATTTTA
66 ATATTTTA
25929935 TTAATTTAATA
1 TTAATTTAATA
25929946 CTAATGCGAT
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
72 57 0.73
73 21 0.27
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.51
Consensus pattern (73 bp):
TTAATTTAATATTTATCTAGATATTAATATGAGATATTAAATTAAATTAAATATTTATCTAGATA
ATATTTTA
Found at i:25929915 original size:19 final size:21
Alignment explanation
Indices: 25929835--25929916 Score: 64
Period size: 19 Copynumber: 4.0 Consensus size: 21
25929825 ATTAAATTAA
* *
25929835 ATTAAATATTTATTTAATAGT
1 ATTAAATATTAATTTAATATT
*
25929856 ATT--TTATTAATTTAATATTT
1 ATTAAATATTAATTTAATA-TT
* * *
25929876 ATCTAGATATTAATATGATA-T
1 AT-TAAATATTAATTTAATATT
25929897 ATTAAAT-TTAATTTAATATT
1 ATTAAATATTAATTTAATATT
25929917 TATCTAGATA
Statistics
Matches: 47, Mismatches: 9, Indels: 11
0.70 0.13 0.16
Matches are distributed among these distances:
19 21 0.45
20 8 0.17
21 7 0.15
23 11 0.23
ACGTcount: A:0.41, C:0.01, G:0.04, T:0.54
Consensus pattern (21 bp):
ATTAAATATTAATTTAATATT
Found at i:25937819 original size:3 final size:3
Alignment explanation
Indices: 25937805--25937858 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
25937795 TCACTTGCTG
* * * * *
25937805 CAT CAC CAT CAT CAT CAT CAT CAT CGT CAC CAT CCT CAT CCT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT CAT
25937853 CAT CAT
1 CAT CAT
25937859 TGGATACATC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.28, C:0.41, G:0.02, T:0.30
Consensus pattern (3 bp):
CAT
Found at i:25942171 original size:33 final size:33
Alignment explanation
Indices: 25942127--25942191 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
25942117 TTTCTTCTTG
*
25942127 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCATGTCCAGCAACCAAACACTC
* *
25942160 ACATTCTAGCTCATGTCTAGCAACCAAACACT
1 ACATTCCAGCTCATGTCCAGCAACCAAACACT
25942192 TCCACTCAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.32, C:0.37, G:0.09, T:0.22
Consensus pattern (33 bp):
ACATTCCAGCTCATGTCCAGCAACCAAACACTC
Found at i:25945875 original size:2 final size:2
Alignment explanation
Indices: 25945868--25945900 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
25945858 GCAGCAAGAA
25945868 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
25945901 AATTGAGTAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:25948611 original size:2 final size:2
Alignment explanation
Indices: 25948604--25948645 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
25948594 TTAACAGATT
25948604 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
25948646 TTGCTCGAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:25949471 original size:20 final size:19
Alignment explanation
Indices: 25949432--25949470 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
25949422 CGTCAACCCC
*
25949432 TATTTTTTATCTCTATTTT
1 TATTTTTTATCCCTATTTT
25949451 TATTTTTCTATCCCT-TTTT
1 TATTTTT-TATCCCTATTTT
25949470 T
1 T
25949471 TCTTATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (19 bp):
TATTTTTTATCCCTATTTT
Found at i:25950342 original size:170 final size:170
Alignment explanation
Indices: 25950060--25950402 Score: 668
Period size: 170 Copynumber: 2.0 Consensus size: 170
25950050 AAGGAGATTA
25950060 AAAATGACCAAATTAAAATATAAATACTAAATTAACAACTTAAGCAAAGTATAAAATCTAATAAA
1 AAAATGACCAAATTAAAATATAAATACTAAATTAACAACTTAAGCAAAGTATAAAATCTAATAAA
25950125 ACCAAACTTAAAACACAAAGTATAGGATATAAAGGTTCTTTTTTTCCTCTGTAAACAAAGAGTGC
66 ACCAAACTTAAAACACAAAGTATAGGATATAAAGGTTCTTTTTTTCCTCTGTAAACAAAGAGTGC
*
25950190 AAAGGAAACCCAAAAAAAAAAAAAAGTAAGGGTGAAAGCT
131 AAAGGAAACCCAAAAAAAAAAAAAAGGAAGGGTGAAAGCT
25950230 AAAATGACCAAATTAAAATATAAATACTAAATTAACAACTTAAGCAAAGTATAAAATCTAATAAA
1 AAAATGACCAAATTAAAATATAAATACTAAATTAACAACTTAAGCAAAGTATAAAATCTAATAAA
25950295 ACCAAACTTAAAACACAAAGTATAGGATATAAAGGTTCTTTTTTTCCTCTGTAAACAAAGAGTGC
66 ACCAAACTTAAAACACAAAGTATAGGATATAAAGGTTCTTTTTTTCCTCTGTAAACAAAGAGTGC
*
25950360 AAAGGAAACCCAAAAAAAAAAAAAAGGAAGTGTGAAAGCT
131 AAAGGAAACCCAAAAAAAAAAAAAAGGAAGGGTGAAAGCT
25950400 AAA
1 AAA
25950403 CACCAACTAA
Statistics
Matches: 171, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
170 171 1.00
ACGTcount: A:0.53, C:0.13, G:0.12, T:0.22
Consensus pattern (170 bp):
AAAATGACCAAATTAAAATATAAATACTAAATTAACAACTTAAGCAAAGTATAAAATCTAATAAA
ACCAAACTTAAAACACAAAGTATAGGATATAAAGGTTCTTTTTTTCCTCTGTAAACAAAGAGTGC
AAAGGAAACCCAAAAAAAAAAAAAAGGAAGGGTGAAAGCT
Found at i:25951311 original size:42 final size:42
Alignment explanation
Indices: 25951247--25951328 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
25951237 GCCACATGCT
* * *
25951247 CGTGTGCTAGGCGGTGTGCCTCACAT-GGCTGAGACACACGAC
1 CGTGTGCTAGGCCGTGTACCTCAC-TCGGCTAAGACACACGAC
25951289 CGTGTGCTAGGCCGTGTACCTCACTCGGCTAAGACACACG
1 CGTGTGCTAGGCCGTGTACCTCACTCGGCTAAGACACACG
25951329 CCCATGTCTC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 1 0.03
42 35 0.97
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (42 bp):
CGTGTGCTAGGCCGTGTACCTCACTCGGCTAAGACACACGAC
Found at i:25952457 original size:6 final size:6
Alignment explanation
Indices: 25952432--25952471 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
25952422 AGCCCATTAC
*
25952432 AGTAAT AGTAAAC AGT-AT AGTAAT AGTAAT AGTAAT AGTA
1 AGTAAT AGT-AAT AGTAAT AGTAAT AGTAAT AGTAAT AGTA
25952472 TACAAGTCCT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 4 0.13
6 21 0.70
7 5 0.17
ACGTcount: A:0.50, C:0.03, G:0.17, T:0.30
Consensus pattern (6 bp):
AGTAAT
Found at i:25956098 original size:13 final size:13
Alignment explanation
Indices: 25956082--25956106 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
25956072 TGTTTTAATT
25956082 ATAATAATATAAG
1 ATAATAATATAAG
25956095 ATAATAATATAA
1 ATAATAATATAA
25956107 TAATATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (13 bp):
ATAATAATATAAG
Found at i:25968407 original size:28 final size:30
Alignment explanation
Indices: 25968376--25968476 Score: 89
Period size: 33 Copynumber: 3.2 Consensus size: 30
25968366 CATATGACTT
*
25968376 AGGCCCACACT-AC-TACTGTATAGGGCTA
1 AGGCCCAAACTCACATACTGTATAGGGCTA
25968404 AGGCCCAAACTGCACTGATACTGTATAGGGCTA
1 AGGCCCAAACT-CAC--ATACTGTATAGGGCTA
* * * *
25968437 AGGCCCAGACTGTACTGATACTGAATAGGGCTC
1 AGGCCCAAACT-CAC--ATACTGTATAGGGCTA
25968470 AGGCCCA
1 AGGCCCA
25968477 GATCATTACT
Statistics
Matches: 63, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.16
30 2 0.03
33 51 0.81
ACGTcount: A:0.29, C:0.27, G:0.25, T:0.20
Consensus pattern (30 bp):
AGGCCCAAACTCACATACTGTATAGGGCTA
Found at i:25968477 original size:33 final size:33
Alignment explanation
Indices: 25968389--25968478 Score: 144
Period size: 33 Copynumber: 2.7 Consensus size: 33
25968379 CCCACACTAC
*
25968389 TACTGTATAGGGCTAAGGCCCAAACTGCACTGA
1 TACTGTATAGGGCTAAGGCCCAGACTGCACTGA
*
25968422 TACTGTATAGGGCTAAGGCCCAGACTGTACTGA
1 TACTGTATAGGGCTAAGGCCCAGACTGCACTGA
* *
25968455 TACTGAATAGGGCTCAGGCCCAGA
1 TACTGTATAGGGCTAAGGCCCAGA
25968479 TCATTACTGA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.29, C:0.23, G:0.27, T:0.21
Consensus pattern (33 bp):
TACTGTATAGGGCTAAGGCCCAGACTGCACTGA
Found at i:25971502 original size:22 final size:24
Alignment explanation
Indices: 25971477--25971522 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
25971467 CGATGGAAGC
*
25971477 CCAAAACTGA-T-GTTTGAAGTTG
1 CCAAAACTGAGTAGTGTGAAGTTG
*
25971499 CCAAAAGTGAGTAGTGTGAAGTTG
1 CCAAAACTGAGTAGTGTGAAGTTG
25971523 TTAAGGTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
23 1 0.05
24 10 0.50
ACGTcount: A:0.33, C:0.11, G:0.28, T:0.28
Consensus pattern (24 bp):
CCAAAACTGAGTAGTGTGAAGTTG
Found at i:25972646 original size:13 final size:13
Alignment explanation
Indices: 25972628--25972666 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
25972618 ATATTATAAT
*
25972628 TATTTTGTGTTAA
1 TATTTTATGTTAA
*
25972641 TATTTTATGCTAA
1 TATTTTATGTTAA
25972654 TAATTTTATGTTA
1 T-ATTTTATGTTA
25972667 CAAAATGAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.28, C:0.03, G:0.10, T:0.59
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:25976694 original size:21 final size:21
Alignment explanation
Indices: 25976647--25976695 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
25976637 ACCATTGTTT
* *
25976647 CTAATCTTACCGCTACAGTAT
1 CTAATCTTACCACTACAGTAA
* * *
25976668 CCAATCTTACTACTATAGTAA
1 CTAATCTTACCACTACAGTAA
25976689 CTAATCT
1 CTAATCT
25976696 CACCGCCACC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.27, G:0.06, T:0.35
Consensus pattern (21 bp):
CTAATCTTACCACTACAGTAA
Found at i:25979094 original size:126 final size:126
Alignment explanation
Indices: 25978869--25979179 Score: 390
Period size: 126 Copynumber: 2.5 Consensus size: 126
25978859 AATTAGGATA
* ** * * *
25978869 CACTGTCAACAAAATTACTGAAAAAAGCTTCCGTGTAGACGCTCTTTTGCTACAGTAGTATCTGG
1 CACTGTCAACAAAATTACTGAAAAAAACTTCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGA
* * * *
25978934 AAAAATAATTTTGAGAAAACGTTTTTGAACAAATAGTATCAAAAACGCTTCAAGCAAGATG
66 AAAAATAATTTTGAGAAAACGTTTCTAAACAAATAGTATCAAAAACACGTCAAGCAAGATG
* * *
25978995 CACTGTCAACAAAATTACTGAAAAAAACTTCCACGTGGATGCTATTTTGCTACAATAGTATTTGA
1 CACTGTCAACAAAATTACTGAAAAAAACTTCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGA
* * ** *
25979060 AAAAATAATTTTGAGAAGACGTTTCTAAACAAATAGTATCCAAAACACGTCAATTAGGATG
66 AAAAATAATTTTGAGAAAACGTTTCTAAACAAATAGTATCAAAAACACGTCAAGCAAGATG
* * * * * *
25979121 CACCGTCAGCAAAATTATTG-AAAAAAGTTCCCACATGGATACTCTTTTGCTACAGTAGT
1 CACTGTCAACAAAATTACTGAAAAAAACTT-CCACGTGGATGCTCTTTTGCTACAGTAGT
25979180 TCCTATTTGG
Statistics
Matches: 158, Mismatches: 26, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
125 8 0.05
126 150 0.95
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.28
Consensus pattern (126 bp):
CACTGTCAACAAAATTACTGAAAAAAACTTCCACGTGGATGCTCTTTTGCTACAGTAGTATCTGA
AAAAATAATTTTGAGAAAACGTTTCTAAACAAATAGTATCAAAAACACGTCAAGCAAGATG
Found at i:25982104 original size:21 final size:20
Alignment explanation
Indices: 25982076--25982120 Score: 72
Period size: 21 Copynumber: 2.2 Consensus size: 20
25982066 GCTTCCAGCG
25982076 AGGGTTGTGGTTACTCCGGT
1 AGGGTTGTGGTTACTCCGGT
*
25982096 AGGGATTGTGGTTCCTCCGGT
1 AGGG-TTGTGGTTACTCCGGT
25982117 AGGG
1 AGGG
25982121 GATCTGGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 4 0.17
21 19 0.83
ACGTcount: A:0.11, C:0.16, G:0.42, T:0.31
Consensus pattern (20 bp):
AGGGTTGTGGTTACTCCGGT
Found at i:25982128 original size:21 final size:21
Alignment explanation
Indices: 25982083--25982129 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
25982073 GCGAGGGTTG
*
25982083 TGGTTACTCCGGTAGGGATTG
1 TGGTTACTCCGGTAGGGATTC
*
25982104 TGGTTCCTCCGGTAGGGGA-TC
1 TGGTTACTCCGGTA-GGGATTC
25982125 TGGTT
1 TGGTT
25982130 GTGGGTTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.11, C:0.17, G:0.38, T:0.34
Consensus pattern (21 bp):
TGGTTACTCCGGTAGGGATTC
Found at i:25982494 original size:30 final size:30
Alignment explanation
Indices: 25982460--25982526 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
25982450 GTTGAAGTGT
25982460 TGGGCCCAGTGACTGTGTGAGCGCTGTTGA
1 TGGGCCCAGTGACTGTGTGAGCGCTGTTGA
* * *
25982490 TGGGCCCGGTGATTGTGTGGGCGCTGTTGA
1 TGGGCCCAGTGACTGTGTGAGCGCTGTTGA
*
25982520 TAGGCCC
1 TGGGCCC
25982527 GCATCCTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.10, C:0.21, G:0.42, T:0.27
Consensus pattern (30 bp):
TGGGCCCAGTGACTGTGTGAGCGCTGTTGA
Found at i:25983034 original size:7 final size:7
Alignment explanation
Indices: 25983024--25983048 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25983014 TTATATACAT
25983024 AATACTA
1 AATACTA
25983031 AATACTA
1 AATACTA
25983038 AATACTA
1 AATACTA
25983045 AATA
1 AATA
25983049 TGAAACGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:25984219 original size:21 final size:21
Alignment explanation
Indices: 25984195--25984255 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 21
25984185 CTTTTTTGCA
*
25984195 AAAATTAAAGAGAGCTTTGAG
1 AAAATTAAAGAGAACTTTGAG
** *
25984216 AAAATTTGAGAGAATTTTGAG
1 AAAATTAAAGAGAACTTTGAG
* *
25984237 AGAATTATAAGAGGACTTT
1 AAAATTA-AAGAGAACTTT
25984256 TGTGTGAAAA
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
21 22 0.73
22 8 0.27
ACGTcount: A:0.44, C:0.03, G:0.23, T:0.30
Consensus pattern (21 bp):
AAAATTAAAGAGAACTTTGAG
Found at i:25984236 original size:11 final size:11
Alignment explanation
Indices: 25984210--25984242 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
25984200 TAAAGAGAGC
*
25984210 TTTGAGA-AAA
1 TTTGAGAGAAT
25984220 TTTGAGAGAAT
1 TTTGAGAGAAT
25984231 TTTGAGAGAAT
1 TTTGAGAGAAT
25984242 T
1 T
25984243 ATAAGAGGAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
10 7 0.33
11 14 0.67
ACGTcount: A:0.39, C:0.00, G:0.24, T:0.36
Consensus pattern (11 bp):
TTTGAGAGAAT
Found at i:25985252 original size:11 final size:11
Alignment explanation
Indices: 25985222--25985263 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 11
25985212 GTATATTTAC
25985222 TTATTATATAAG
1 TTATTAT-TAAG
25985234 TATATTATTAAG
1 T-TATTATTAAG
25985246 TTATTATT-A-
1 TTATTATTAAG
25985255 TTATTATTA
1 TTATTATTA
25985264 TATACATATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
9 8 0.29
10 1 0.04
11 7 0.25
12 6 0.21
13 6 0.21
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (11 bp):
TTATTATTAAG
Found at i:25998227 original size:20 final size:20
Alignment explanation
Indices: 25998202--25998248 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
25998192 TCAAAGATTT
25998202 AAATGATGGACACCAATTCA
1 AAATGATGGACACCAATTCA
25998222 AAATGATGGACACCAATTCA
1 AAATGATGGACACCAATTCA
*
25998242 AAGTGAT
1 AAATGAT
25998249 TAGTCAATGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.21
Consensus pattern (20 bp):
AAATGATGGACACCAATTCA
Found at i:26010227 original size:48 final size:48
Alignment explanation
Indices: 26010173--26010311 Score: 188
Period size: 48 Copynumber: 2.9 Consensus size: 48
26010163 ATCAGCCACA
* * *
26010173 TTATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGAAATG
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGAAATG
* * * *
26010221 TTATGAGAGCTAGAGTAAGACCATGTCTGGGACATGGCATCGGCAGTG
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGAAATG
** *
26010269 AGACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGG
1 TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGG
26010312 CCTCAACATG
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
48 79 1.00
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (48 bp):
TTATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGAAATG
Found at i:26010334 original size:48 final size:48
Alignment explanation
Indices: 26010177--26010357 Score: 152
Period size: 48 Copynumber: 3.8 Consensus size: 48
26010167 GCCACATTAT
* * * * * * *** *
26010177 GAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGAAATGTTAT
1 GAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCACTCAGAC
* * *
26010225 GAGAGCTAGA-GTAAGACCATGTCTGGGACATGGCATCGGCAGTGAGAC
1 GAGAGCCA-ATGTAAGACCATGTCTGGGACATGGCATCGGCACTCAGAC
* * *
26010273 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGC-CTCA-AC
1 GAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCACTCAGAC
* *
26010319 ATGTGAGCCAATGTAACACCATGTCTGGGACATGGCATC
1 --GAGAGCCAATGTAAGACCATGTCTGGGACATGGCATC
26010358 AGCAATTTAC
Statistics
Matches: 110, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 2 0.02
47 2 0.02
48 106 0.96
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (48 bp):
GAGAGCCAATGTAAGACCATGTCTGGGACATGGCATCGGCACTCAGAC
Found at i:26012700 original size:39 final size:39
Alignment explanation
Indices: 26012656--26012888 Score: 376
Period size: 39 Copynumber: 6.0 Consensus size: 39
26012646 ATTATATTAT
* *
26012656 CAGCACAAAGCCTGCGGGACTTTAACCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
26012695 CAGCACGAAGCCTGCGGGACTTTGGCCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* *
26012734 GAGCACGAAGCCTGCGGGACTTTAGTCCGGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
* * *
26012773 CAGCACGAAGCCTGCGAGACTTTAGCCCGGATATATTTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
26012812 CAGCACGAAGCCTGCGGGACTTTAGCCCCGATACATTTC
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
*
26012851 CAGCACGAAGCCTACGGGACTTTAGCCCGGATACATTT
1 CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
26012889 TCAGTGTCTT
Statistics
Matches: 177, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 177 1.00
ACGTcount: A:0.24, C:0.29, G:0.24, T:0.22
Consensus pattern (39 bp):
CAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTTC
Found at i:26024574 original size:12 final size:12
Alignment explanation
Indices: 26024559--26024589 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
26024549 GAAAATTAAA
26024559 ATTAAAAATAAT
1 ATTAAAAATAAT
26024571 ATTAAAAATAAT
1 ATTAAAAATAAT
*
26024583 AATAAAA
1 ATTAAAA
26024590 TAAATGAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
ATTAAAAATAAT
Found at i:26024574 original size:18 final size:18
Alignment explanation
Indices: 26024541--26024587 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
26024531 CTTTAAAAAG
26024541 AAATAAAAGA-AA-ATTAA
1 AAATAAAA-ATAATATTAA
*
26024558 AATTAAAAATAATATTAA
1 AAATAAAAATAATATTAA
*
26024576 AAATAATAATAA
1 AAATAAAAATAA
26024588 AATAAATGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
16 1 0.04
17 9 0.36
18 15 0.60
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (18 bp):
AAATAAAAATAATATTAA
Found at i:26026291 original size:48 final size:48
Alignment explanation
Indices: 26026216--26026440 Score: 276
Period size: 48 Copynumber: 4.7 Consensus size: 48
26026206 TGATATGTGT
*
26026216 GCTAGTGTAAGACCATGTCTGGGACATGACATCGGCCATATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGA
* * * *
26026264 GCTAGTGTAAGACCATGTTTGGAACATGGCATCGGCAATGTTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGA
* * * * *
26026312 GCCAGAGTAAGTCTATGTCTGGGACATGGCATCGG-CAT-TGAGATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATAT--TATGAGA
* ** *
26026360 GCTAGTGTAAGACCATGTCTAGGACATGGCATCGGCC-TCAACATGTGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCAT-ATTATGAGA
26026408 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
26026441 TGCAATTTAC
Statistics
Matches: 150, Mismatches: 22, Indels: 10
0.82 0.12 0.05
Matches are distributed among these distances:
46 1 0.01
47 2 0.01
48 146 0.97
49 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCATATTATGAGA
Found at i:26029483 original size:30 final size:30
Alignment explanation
Indices: 26029449--26029507 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
26029439 GGAACTTAAG
* *
26029449 AAGACCCAATATCTCATTTAGGAGCTTGGA
1 AAGACCCAATATCGCATTCAGGAGCTTGGA
***
26029479 AAGACTTGATATCGCATTCAGGAGCTTGG
1 AAGACCCAATATCGCATTCAGGAGCTTGG
26029508 GATTGAAAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.27
Consensus pattern (30 bp):
AAGACCCAATATCGCATTCAGGAGCTTGGA
Found at i:26033177 original size:39 final size:39
Alignment explanation
Indices: 26033132--26033210 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
26033122 GTATTTGATA
* *
26033132 TATGATTGTTTTGAACTAAGTTATAAGTTTGGTAATGCC
1 TATGATTGTTTTGAACTAAGTTATAAGTTCGATAATGCC
*
26033171 TATGATTGTTTTGAACTGAGTTATAAGTTCGATAATGCC
1 TATGATTGTTTTGAACTAAGTTATAAGTTCGATAATGCC
26033210 T
1 T
26033211 CTTAATCTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.28, C:0.09, G:0.20, T:0.43
Consensus pattern (39 bp):
TATGATTGTTTTGAACTAAGTTATAAGTTCGATAATGCC
Found at i:26035991 original size:21 final size:21
Alignment explanation
Indices: 26035967--26036017 Score: 77
Period size: 21 Copynumber: 2.4 Consensus size: 21
26035957 TTGGCTTGGC
26035967 AAGATCGT-GGTGGCCCTTTCA
1 AAGATCGTAGG-GGCCCTTTCA
26035988 AAGATCGTAGGGGCCCTTTCA
1 AAGATCGTAGGGGCCCTTTCA
*
26036009 AAGTTCGTA
1 AAGATCGTA
26036018 AGCAAGAAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (21 bp):
AAGATCGTAGGGGCCCTTTCA
Found at i:26040195 original size:50 final size:49
Alignment explanation
Indices: 26040136--26040397 Score: 207
Period size: 50 Copynumber: 5.2 Consensus size: 49
26040126 CTATTATAAA
26040136 TTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTT
1 TTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTT
* ** * * **
26040185 TTATGTTGTTTTTAATTT-AT-TTTAAAGTTATTTTGTTA-GTAAT-TATTATAAA
1 TTAT-TTG--TTTAGTTTAATGTTTATTGTGA-TTTGTTATG-AATGTA-AAT-TT
26040237 TTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTT
1 TTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTT
* ** * * **
26040286 TTATGTTGTTTTTAATTT-AT-TTTAAAGTTATTTTGTTA-GTAAT-TATTATAAA
1 TTAT-TTG--TTTAGTTTAATGTTTATTGTGA-TTTGTTATG-AATGTA-AAT-TT
26040338 TTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTT
1 TTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTT
26040387 TTATGTTGTTT
1 TTAT-TTGTTT
26040398 TTAATTTATT
Statistics
Matches: 162, Mismatches: 28, Indels: 45
0.69 0.12 0.19
Matches are distributed among these distances:
49 26 0.16
50 60 0.37
51 54 0.33
52 22 0.14
ACGTcount: A:0.26, C:0.00, G:0.14, T:0.60
Consensus pattern (49 bp):
TTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTT
Found at i:26040220 original size:27 final size:25
Alignment explanation
Indices: 26040185--26040246 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
26040175 ATGTAAATTT
* * *
26040185 TTATGTTGTTTTTAATTTATTTTAAA
1 TTATTTTGTTTGTAA-TTATTATAAA
*
26040211 GTTATTTTGTTAGTAATTATTATAAA
1 -TTATTTTGTTTGTAATTATTATAAA
26040237 TTA-TTTGTTT
1 TTATTTTGTTT
26040247 AGTTTAATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 6 0.20
25 3 0.10
26 9 0.30
27 12 0.40
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (25 bp):
TTATTTTGTTTGTAATTATTATAAA
Found at i:26040221 original size:51 final size:51
Alignment explanation
Indices: 26040165--26040424 Score: 220
Period size: 51 Copynumber: 5.1 Consensus size: 51
26040155 TTTATTGTGA
26040165 TTTGTTATGAATGTAAATTTTTATGTTGTTTTTAATTTATTTTAAAGTTAT
1 TTTGTTATGAATGTAAATTTTTATGTTGTTTTTAATTTATTTTAAAGTTAT
* ** * ** *
26040216 TTTGTTA-GTAAT-TATTATAAATTAT-TTG--TTTAGTTTAATGTTTATTGTGA-
1 TTTGTTATG-AATGTA-AAT-TTTTATGTTGTTTTTAATTT-AT-TTTAAAGTTAT
26040266 TTTGTTATGAATGTAAATTTTTATGTTGTTTTTAATTTATTTTAAAGTTAT
1 TTTGTTATGAATGTAAATTTTTATGTTGTTTTTAATTTATTTTAAAGTTAT
* ** * ** *
26040317 TTTGTTA-GTAAT-TATTATAAATTAT-TTG--TTTAGTTTAATGTTTATTGTGA-
1 TTTGTTATG-AATGTA-AAT-TTTTATGTTGTTTTTAATTT-AT-TTTAAAGTTAT
26040367 TTTGTTATGAATGTAAATTTTTATGTTGTTTTTAATTTATTTTAAAGTTAT
1 TTTGTTATGAATGTAAATTTTTATGTTGTTTTTAATTTATTTTAAAGTTAT
26040418 TTTGTTA
1 TTTGTTA
26040425 GTAATTATTA
Statistics
Matches: 159, Mismatches: 28, Indels: 44
0.69 0.12 0.19
Matches are distributed among these distances:
49 22 0.14
50 54 0.34
51 61 0.38
52 22 0.14
ACGTcount: A:0.27, C:0.00, G:0.13, T:0.60
Consensus pattern (51 bp):
TTTGTTATGAATGTAAATTTTTATGTTGTTTTTAATTTATTTTAAAGTTAT
Found at i:26040251 original size:101 final size:101
Alignment explanation
Indices: 26040127--26040526 Score: 695
Period size: 101 Copynumber: 4.0 Consensus size: 101
26040117 GATTAATAAC
26040127 TATTATAAATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTTTTATGTT
1 TATTATAAATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTTTTATGTT
26040192 GTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAT
66 GTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAT
26040228 TATTATAAATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTTTTATGTT
1 TATTATAAATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTTTTATGTT
26040293 GTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAT
66 GTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAT
26040329 TATTATAAATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTTTTATGTT
1 TATTATAAATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTTTTATGTT
26040394 GTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAT
66 GTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAT
** * * *
26040430 TATTATAAATTATTTGTTTAGTTTAACATTTACTGTGATTTGTTATAAATGTAAA----AAT-TT
1 TATTATAAATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTTTTATGTT
* *
26040490 -TTTTAAATTTATTTTAAAGTGATTTTGTTAGTAAT
66 GTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAT
26040525 TA
1 TA
26040527 ACTTCATTTG
Statistics
Matches: 292, Mismatches: 7, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
95 35 0.12
96 2 0.01
97 2 0.01
101 253 0.87
ACGTcount: A:0.29, C:0.01, G:0.12, T:0.58
Consensus pattern (101 bp):
TATTATAAATTATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAAATTTTTATGTT
GTTTTTAATTTATTTTAAAGTTATTTTGTTAGTAAT
Found at i:26040321 original size:27 final size:25
Alignment explanation
Indices: 26040286--26040347 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
26040276 ATGTAAATTT
* * *
26040286 TTATGTTGTTTTTAATTTATTTTAAA
1 TTATTTTGTTTGTAA-TTATTATAAA
*
26040312 GTTATTTTGTTAGTAATTATTATAAA
1 -TTATTTTGTTTGTAATTATTATAAA
26040338 TTA-TTTGTTT
1 TTATTTTGTTT
26040348 AGTTTAATGT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 6 0.20
25 3 0.10
26 9 0.30
27 12 0.40
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (25 bp):
TTATTTTGTTTGTAATTATTATAAA
Found at i:26040422 original size:27 final size:25
Alignment explanation
Indices: 26040387--26040448 Score: 63
Period size: 27 Copynumber: 2.4 Consensus size: 25
26040377 ATGTAAATTT
* * *
26040387 TTATGTTGTTTTTAATTTATTTTAAA
1 TTATTTTGTTTGTAA-TTATTATAAA
*
26040413 GTTATTTTGTTAGTAATTATTATAAA
1 -TTATTTTGTTTGTAATTATTATAAA
26040439 TTA-TTTGTTT
1 TTATTTTGTTT
26040449 AGTTTAACAT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 6 0.20
25 3 0.10
26 9 0.30
27 12 0.40
ACGTcount: A:0.27, C:0.00, G:0.10, T:0.63
Consensus pattern (25 bp):
TTATTTTGTTTGTAATTATTATAAA
Found at i:26042288 original size:33 final size:33
Alignment explanation
Indices: 26042246--26042310 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
26042236 AAGATATAAC
**
26042246 TTTGCAATTTAAATGAGATGTATTGGAACAAAA
1 TTTGCAATTTAAATGAGACATATTGGAACAAAA
*
26042279 TTTGCAATTTAATTGAGACATATTGGAACAAA
1 TTTGCAATTTAAATGAGACATATTGGAACAAA
26042311 CTTGGAACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.42, C:0.08, G:0.17, T:0.34
Consensus pattern (33 bp):
TTTGCAATTTAAATGAGACATATTGGAACAAAA
Found at i:26054920 original size:16 final size:16
Alignment explanation
Indices: 26054880--26054924 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 16
26054870 TTTTCAAGTT
*
26054880 TATAATTTTTATATTA
1 TATAATTTATATATTA
*
26054896 TGTTAAATTTATATATTA
1 T-AT-AATTTATATATTA
26054914 TATAATTTATA
1 TATAATTTATA
26054925 ACATAAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 9 0.38
17 2 0.08
18 13 0.54
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (16 bp):
TATAATTTATATATTA
Found at i:26060101 original size:34 final size:34
Alignment explanation
Indices: 26060032--26060149 Score: 148
Period size: 34 Copynumber: 3.4 Consensus size: 34
26060022 TTTTAAGAAA
* *
26060032 TAAATTATGGTTTATAG-TTTTAAAAAAATAATAAT
1 TAAATTAGGGTTTAGAGATTTTAAAAAAAT--TAAT
* * *
26060067 TAAATTAGGTTTTAGGGATTTTAAATAAATTAAT
1 TAAATTAGGGTTTAGAGATTTTAAAAAAATTAAT
* *
26060101 TAAATTAGGGTTTAGAGTTTTTAAAAAAATTATT
1 TAAATTAGGGTTTAGAGATTTTAAAAAAATTAAT
26060135 TAAATTAGGGTTTAG
1 TAAATTAGGGTTTAG
26060150 TTTTTTTTTA
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
34 48 0.67
35 13 0.18
36 11 0.15
ACGTcount: A:0.42, C:0.00, G:0.14, T:0.43
Consensus pattern (34 bp):
TAAATTAGGGTTTAGAGATTTTAAAAAAATTAAT
Found at i:26060504 original size:121 final size:125
Alignment explanation
Indices: 26060250--26060633 Score: 453
Period size: 121 Copynumber: 3.1 Consensus size: 125
26060240 TGATTTTATT
* * * * *
26060250 TTTTTCTACAATAGTTTC-AAAAAATTTAATTTTGAGAAGACGGTTCTGAAAAGATAATGTCAAA
1 TTTTTCTACAGTAGTTCCTAAAAAA-ATAA-TTTGAGAAGACGGTTCTAAAAAAATAATGTCAAA
* ** * * * * *
26060314 AACGCTTCAAGCAGGATGGGCTGTCAACAAAATTACTAAAAAAAGCTTCCATGTGGACGCTG
64 AACGCTTCAAGCAGAATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTGGACGCTC
*
26060376 TTCTTCTACAGTAGTTCCT-AAAAAA-AA-TTGAGAAGACGGTTCTAAAAAAATAATGTC-AAAA
1 TTTTTCTACAGTAGTTCCTAAAAAAATAATTTGAGAAGACGGTTCTAAAAAAATAATGTCAAAAA
* * *
26060437 TGCTTTAAGCAGAATGCACTATCAGCAAAATTACTGAAAAAAGC-TCCTACATGGACGCTC
66 CGCTTCAAGCAGAATGCACTATCAGCAAAATTACTGAAAAAAGCTTCC-ACGTGGACGCTC
* * * * *
26060497 TTTTTCTATAGTAGTTCCTAAAAAAATAATTTTTAGAAGACGATTCTAACAAAATAGTGTCAAAA
1 TTTTTCTACAGTAGTTCCTAAAAAAATAA-TTTGAGAAGACGGTTCTAAAAAAATAATGTCAAAA
*
26060562 ACACTTCAAGCA-AGATGCACTATCAGCAAAATTACTG-AAAAAGCTTCCACGTGGACGCTC
65 ACGCTTCAAGCAGA-ATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTGGACGCTC
26060622 -TTTTCTACAGTA
1 TTTTTCTACAGTA
26060634 ATGCCTATTT
Statistics
Matches: 221, Mismatches: 28, Indels: 20
0.82 0.10 0.07
Matches are distributed among these distances:
120 3 0.01
121 66 0.30
122 34 0.15
123 2 0.01
124 13 0.06
125 45 0.20
126 58 0.26
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.28
Consensus pattern (125 bp):
TTTTTCTACAGTAGTTCCTAAAAAAATAATTTGAGAAGACGGTTCTAAAAAAATAATGTCAAAAA
CGCTTCAAGCAGAATGCACTATCAGCAAAATTACTGAAAAAAGCTTCCACGTGGACGCTC
Found at i:26067600 original size:22 final size:23
Alignment explanation
Indices: 26067550--26067603 Score: 60
Period size: 21 Copynumber: 2.5 Consensus size: 23
26067540 AGTAAACATG
* *
26067550 TTTTAATTAATAAATTTTATTAA
1 TTTTAAATATTAAATTTTATTAA
*
26067573 --TGAAATATTAAATTTT-TTAA
1 TTTTAAATATTAAATTTTATTAA
26067593 TTTTAAATATT
1 TTTTAAATATT
26067604 TATTACTTTA
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
20 4 0.16
21 13 0.52
22 8 0.32
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (23 bp):
TTTTAAATATTAAATTTTATTAA
Found at i:26077214 original size:39 final size:41
Alignment explanation
Indices: 26077119--26077302 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
26077109 TTGAATGATG
*
26077119 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
26077158 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
*
26077198 TCCGGGCTAAG-CCCGAAGGCATTTGTGTG-AGATACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
26077237 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
26077277 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26077303 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 19
0.81 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 60 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:26077333 original size:79 final size:79
Alignment explanation
Indices: 26077170--26077335 Score: 178
Period size: 79 Copynumber: 2.1 Consensus size: 79
26077160 CGGACTAAGA
* ***
26077170 TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGTGAGATACTA
1 TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTA
*
26077235 AATCCGGGTTAAGT
66 AATCCGGGTTAAAT
* *
26077249 CCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGA-
1 TCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA-GAT
* * *
26077311 GCTATAT-CTGGTTAAAT
62 ACTAAATCCGGGTTAAAT
26077328 TCCGAAGG
1 TCCGAAGG
26077336 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.64
80 21 0.29
81 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTA
AATCCGGGTTAAAT
Found at i:26081734 original size:26 final size:27
Alignment explanation
Indices: 26081696--26081748 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 27
26081686 TTAGATTAAC
*
26081696 TATTTCAAAATT-AATATTATTTTAATA
1 TATTTCAAAATTAAAT-TTAATTTAATA
*
26081723 TATTT-AATATTAAATTTAATTTAATA
1 TATTTCAAAATTAAATTTAATTTAATA
26081749 CATATCTTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (27 bp):
TATTTCAAAATTAAATTTAATTTAATA
Found at i:26081832 original size:17 final size:18
Alignment explanation
Indices: 26081794--26081834 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
26081784 AATGATTATC
*
26081794 CTAATATTAAATTAAAGT
1 CTAATATGAAATTAAAGT
*
26081812 -TAATATGAAATTTAA-T
1 CTAATATGAAATTAAAGT
26081828 CTAATAT
1 CTAATAT
26081835 TTATCTTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (18 bp):
CTAATATGAAATTAAAGT
Found at i:26090225 original size:47 final size:47
Alignment explanation
Indices: 26090156--26090248 Score: 168
Period size: 47 Copynumber: 2.0 Consensus size: 47
26090146 ATTGCCTTCG
* *
26090156 GGATTATTGCAACCTGTGAAAATTCCGCTATGGAAGTGGGAAAGAGA
1 GGATTACTGCAACCTGTGAAAATTCCGCTATGGAAGTGCGAAAGAGA
26090203 GGATTACTGCAACCTGTGAAAATTCCGCTATGGAAGTGCGAAAGAG
1 GGATTACTGCAACCTGTGAAAATTCCGCTATGGAAGTGCGAAAGAG
26090249 TAACAATGGA
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.33, C:0.15, G:0.29, T:0.23
Consensus pattern (47 bp):
GGATTACTGCAACCTGTGAAAATTCCGCTATGGAAGTGCGAAAGAGA
Found at i:26091500 original size:7 final size:8
Alignment explanation
Indices: 26091476--26091502 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
26091466 CAAGACCCGG
26091476 TTGAATTT
1 TTGAATTT
26091484 TTGAATTT
1 TTGAATTT
26091492 TTGAATTT
1 TTGAATTT
26091500 TTG
1 TTG
26091503 GACTTAGAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.15, T:0.63
Consensus pattern (8 bp):
TTGAATTT
Found at i:26094902 original size:19 final size:21
Alignment explanation
Indices: 26094868--26094907 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
26094858 TTATTTTATG
26094868 GTATCAATATTTTAAA-AAAA
1 GTATCAATATTTTAAATAAAA
*
26094888 GTATCGATA-TTTAAATAAAA
1 GTATCAATATTTTAAATAAAA
26094908 ATTAATACCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (21 bp):
GTATCAATATTTTAAATAAAA
Found at i:26095887 original size:17 final size:18
Alignment explanation
Indices: 26095854--26095895 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
26095844 ATCACTTGCT
26095854 ATTTCAATAGAAATTT-C
1 ATTTCAATAGAAATTTCC
*
26095871 ATTTCAATA-ACATTTTCC
1 ATTTCAATAGA-AATTTCC
26095889 ATTTCAA
1 ATTTCAA
26095896 AATTGATAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 13 0.59
18 8 0.36
ACGTcount: A:0.38, C:0.17, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTTCAATAGAAATTTCC
Found at i:26096486 original size:21 final size:21
Alignment explanation
Indices: 26096460--26096502 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
26096450 GTCACACGTG
26096460 AATGCATATATATCTATATAT
1 AATGCATATATATCTATATAT
26096481 AATGCATATATATCTATATAT
1 AATGCATATATATCTATATAT
26096502 A
1 A
26096503 TAAGATTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.05, T:0.42
Consensus pattern (21 bp):
AATGCATATATATCTATATAT
Found at i:26107063 original size:47 final size:47
Alignment explanation
Indices: 26107005--26107134 Score: 154
Period size: 47 Copynumber: 2.8 Consensus size: 47
26106995 GTGTGAATAA
* *
26107005 TACCTTGATTTGGCTACCAGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTACCAGCCATGGTATAGGTACTCAGAGAGAAGT
** * * * *
26107052 TACCTTGATTTGGCTACGGGCCATGGTATAAGTACTCCGGGATAAGT
1 TACCTTGATTTGGCTACCAGCCATGGTATAGGTACTCAGAGAGAAGT
**
26107099 TAGTTTGATTTGGCTA-CAGGCCATGGTATAGGTACT
1 TACCTTGATTTGGCTACCA-GCCATGGTATAGGTACT
26107135 TATTGATTGA
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
47 69 1.00
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (47 bp):
TACCTTGATTTGGCTACCAGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:26109558 original size:20 final size:20
Alignment explanation
Indices: 26109516--26109561 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
26109506 AGCACATGTA
* * **
26109516 TTCATAAAATTTTATAATTT
1 TTCATTAAATTTTACAACAT
26109536 TTCATTAAATTTTACAACAT
1 TTCATTAAATTTTACAACAT
26109556 TTCATT
1 TTCATT
26109562 TTAGTCCCTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (20 bp):
TTCATTAAATTTTACAACAT
Found at i:26118784 original size:22 final size:21
Alignment explanation
Indices: 26118759--26118813 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 21
26118749 GTTATGTAAG
*
26118759 TTTGAT-GATTTTGGCATATTAA
1 TTTGATAG-TTTTGGC-TATGAA
26118781 TTTGATATGTTTTGGCTATGAA
1 TTTGATA-GTTTTGGCTATGAA
26118803 TTTGAGTAGTT
1 TTTGA-TAGTT
26118814 AAGAGGATGG
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 19 0.66
23 9 0.31
24 1 0.03
ACGTcount: A:0.24, C:0.04, G:0.22, T:0.51
Consensus pattern (21 bp):
TTTGATAGTTTTGGCTATGAA
Found at i:26120159 original size:20 final size:20
Alignment explanation
Indices: 26120130--26120175 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
26120120 AACACATATA
* *
26120130 TTCATAAAATTTTAGAATTT
1 TTCATTAAATTTTACAATTT
26120150 TTCATTAAATTTTACAATTT
1 TTCATTAAATTTTACAATTT
26120170 TTCATT
1 TTCATT
26120176 TTAGTCCCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.54
Consensus pattern (20 bp):
TTCATTAAATTTTACAATTT
Found at i:26130605 original size:16 final size:16
Alignment explanation
Indices: 26130586--26130616 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26130576 CTTCTTCACT
26130586 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
26130602 TACTTACTTACTTAA
1 TACTCACTTACTTAA
26130617 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:26130622 original size:20 final size:20
Alignment explanation
Indices: 26130583--26130622 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26130573 AGACTTCTTC
* *
26130583 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
26130603 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
26130623 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:26131010 original size:55 final size:51
Alignment explanation
Indices: 26130855--26131063 Score: 190
Period size: 55 Copynumber: 3.9 Consensus size: 51
26130845 ATCCTTTGGA
*
26130855 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG
1 AACTTA-CAATGCCATGTCTTGACATGGTCTTACAT-GTATCCTTGCCTTATG
* * * *
26130908 AACTCACTAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAG
1 AACTTAC-AATGCCATGTCTTGACATGGTCTTACAT-GTATCC-TTGCCTTAT-G
*
26130962 TAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTA-G
1 -AACTTA-CAATGCCATGTCTTGACATGGTCTTACATG-TATCCTTGCCTTATG
**
26131015 AAACCTTACCAATTGCCATACCTT-AGCATGGTCTTACATGGTATCCTTG
1 -AA-CTTA-CAA-TGCCATGTCTTGA-CATGGTCTTACAT-GTATCCTTG
26131064 AACCCTAATG
Statistics
Matches: 130, Mismatches: 15, Indels: 20
0.79 0.09 0.12
Matches are distributed among these distances:
52 3 0.02
53 45 0.35
54 10 0.08
55 68 0.52
56 4 0.03
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (51 bp):
AACTTACAATGCCATGTCTTGACATGGTCTTACATGTATCCTTGCCTTATG
Found at i:26133941 original size:18 final size:18
Alignment explanation
Indices: 26133899--26133941 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
26133889 GCCCATTCCG
* *
26133899 AAGTATATATATATACAT
1 AAGTATGTATATATACAC
26133917 ATA-TATGTATATATACAC
1 A-AGTATGTATATATACAC
26133935 AAGTATG
1 AAGTATG
26133942 CCCATTCGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
17 1 0.05
18 19 0.90
19 1 0.05
ACGTcount: A:0.47, C:0.07, G:0.09, T:0.37
Consensus pattern (18 bp):
AAGTATGTATATATACAC
Found at i:26134575 original size:143 final size:144
Alignment explanation
Indices: 26134313--26134600 Score: 542
Period size: 143 Copynumber: 2.0 Consensus size: 144
26134303 TGAATGAAAA
26134313 GAAAAGAGGTAAGATGTACTGAGTTGTTGATCTCGGCACTAAACGTGCGGGTATAACCATTTATG
1 GAAAAGAGGTAAGATGTACTGAGTTGTTGATCTCGGCACTAAACGTGCGGGTATAACCATTTATG
* *
26134378 ACCATGAGATTGGCGCTAAGTGCGCGGGATTAAATTGTACAGCACTAAGTGTGCGATTTGACTAT
66 ACCATGAGATGGGCGCTAAGTGCGCGGGATTAAATTGTACAGCACTAAGGGTGCGATTTGACTAT
26134443 GTTGCACTAAGTGT
131 GTTGCACTAAGTGT
26134457 GAAAAGAGGTAAGATGTACTGAGTTGTTGATCTCGGCACTAAACGTGCGGG-ATAACCATTTATG
1 GAAAAGAGGTAAGATGTACTGAGTTGTTGATCTCGGCACTAAACGTGCGGGTATAACCATTTATG
26134521 ACCATGAGATGGGCGCTAAGTGCGCGGGATTAAATTGTACAGCACTAAGGGTGCGATTTGACTAT
66 ACCATGAGATGGGCGCTAAGTGCGCGGGATTAAATTGTACAGCACTAAGGGTGCGATTTGACTAT
*
26134586 GTTGCACTCAGTGT
131 GTTGCACTAAGTGT
26134600 G
1 G
26134601 CGAAATGTAT
Statistics
Matches: 141, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
143 90 0.64
144 51 0.36
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (144 bp):
GAAAAGAGGTAAGATGTACTGAGTTGTTGATCTCGGCACTAAACGTGCGGGTATAACCATTTATG
ACCATGAGATGGGCGCTAAGTGCGCGGGATTAAATTGTACAGCACTAAGGGTGCGATTTGACTAT
GTTGCACTAAGTGT
Found at i:26134592 original size:27 final size:27
Alignment explanation
Indices: 26134562--26134738 Score: 151
Period size: 27 Copynumber: 6.5 Consensus size: 27
26134552 AAATTGTACA
* *
26134562 GCACTAAGGGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGATTTGACTATGTG
* **
26134589 GCACTCAGTGTGCGAAATGTA-TATGAT-
1 GCACTAAGTGTGCGATTTG-ACTATG-TG
* * *
26134616 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGATTTGACTATGTG
* *
26134643 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-TTTGACTATGTG
* * *
26134671 GCACTAAGTGTGCAATTTGATTACGTG
1 GCACTAAGTGTGCGATTTGACTATGTG
* * * *
26134698 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGATTTGACTATGTG
*
26134725 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26134739 GGCTCAATAT
Statistics
Matches: 121, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 97 0.80
28 23 0.19
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (27 bp):
GCACTAAGTGTGCGATTTGACTATGTG
Found at i:26134701 original size:55 final size:54
Alignment explanation
Indices: 26134616--26134738 Score: 158
Period size: 55 Copynumber: 2.3 Consensus size: 54
26134606 TGTATATGAT
* *
26134616 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGAATTGACCACGCGGCACTAAGTGTGCGAGT-TGACTATATA
** * *
26134671 GCACTAAGTGTGC-AATTTGATTACGTGGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAA-TTGACCACGCGGCACTAAGTGTGCGAGTTGACTATATA
*
26134725 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26134739 GGCTCAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
54 22 0.37
55 37 0.63
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATTGACCACGCGGCACTAAGTGTGCGAGTTGACTATATA
Found at i:26134729 original size:82 final size:81
Alignment explanation
Indices: 26134558--26134738 Score: 188
Period size: 82 Copynumber: 2.2 Consensus size: 81
26134548 GATTAAATTG
* * * * *
26134558 TACAGCACTAAGGGTGCGATTTGACTATGTTGCACTCAGTGTGCGAAATGTATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGTATACGATGCACTAA
26134623 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * *
26134639 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGC--AATTTGATTACG-TGGCA
1 TACAGCACTAAGTGTGCGA-TCTGACTATGTAGCACTAAGTGTGCGAAATGT-A-TACGAT-GCA
* **
26134701 CTAAGTGTGCGAGTTGATTA
62 CTAAGTGTGCGAATTGACCA
* *
26134721 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26134739 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 15, Indels: 7
0.79 0.15 0.07
Matches are distributed among these distances:
80 4 0.05
81 18 0.22
82 59 0.73
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATCTGACTATGTAGCACTAAGTGTGCGAAATGTATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26134815 original size:189 final size:189
Alignment explanation
Indices: 26134599--26134976 Score: 702
Period size: 189 Copynumber: 2.0 Consensus size: 189
26134589 GCACTCAGTG
*
26134599 TGCGAAATGTATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGA
1 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGA
*
26134664 CTATGTAGCACTAAGTGTGCAATTTGATTACGTGGCACTAAGTGTGCGAGTTGATTATATAGCAC
66 CTATGTAGCACTAAGTGTGCAATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCAC
* *
26134729 TGAGTGTGCGGGCTCAATATACATTCGTGAATTATTATGGACACTATGTGTGCGACACT
131 TGAGTGTGCGGACTCAATATACATTCGTGAATCATTATGGACACTATGTGTGCGACACT
*
26134788 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGA
1 TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGA
*
26134853 CTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCAC
66 CTATGTAGCACTAAGTGTGCAATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCAC
26134918 TGAGTGTGCGGACTCAATATACATTCGTGAATCATTATGGACACTATGTGTGCGACACT
131 TGAGTGTGCGGACTCAATATACATTCGTGAATCATTATGGACACTATGTGTGCGACACT
26134977 ATTGAGTCGA
Statistics
Matches: 183, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
189 183 1.00
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (189 bp):
TGCGAAATGAATATGATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTGA
CTATGTAGCACTAAGTGTGCAATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCAC
TGAGTGTGCGGACTCAATATACATTCGTGAATCATTATGGACACTATGTGTGCGACACT
Found at i:26134818 original size:27 final size:27
Alignment explanation
Indices: 26134788--26134927 Score: 138
Period size: 27 Copynumber: 5.1 Consensus size: 27
26134778 GTGCGACACT
* *
26134788 TGCGAAATGAATATG-ATGCACTAAGTG
1 TGCGAATTGACTATGTA-GCACTAAGTG
* **
26134815 TGCGAATTGACCATGCGGCACTAAGTG
1 TGCGAATTGACTATGTAGCACTAAGTG
*
26134842 TGCGAGTTTGACTATGTAGCACTAAGTG
1 TGCGA-ATTGACTATGTAGCACTAAGTG
* * *
26134870 TGCGATTTGATTACGTAGCACTAAGTG
1 TGCGAATTGACTATGTAGCACTAAGTG
* * * *
26134897 TGCGAGTTGATTATATAGCACTGAGTG
1 TGCGAATTGACTATGTAGCACTAAGTG
26134924 TGCG
1 TGCG
26134928 GACTCAATAT
Statistics
Matches: 97, Mismatches: 14, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
27 74 0.76
28 23 0.24
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
TGCGAATTGACTATGTAGCACTAAGTG
Found at i:26134871 original size:55 final size:54
Alignment explanation
Indices: 26134805--26134927 Score: 156
Period size: 55 Copynumber: 2.3 Consensus size: 54
26134795 TGAATATGAT
* * *
26134805 GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAG-TTGACTATATA
* ** * *
26134860 GCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATA
*
26134914 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26134928 GACTCAATAT
Statistics
Matches: 59, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
54 22 0.37
55 37 0.63
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (54 bp):
GCACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATA
Found at i:26135762 original size:61 final size:61
Alignment explanation
Indices: 26135689--26135810 Score: 199
Period size: 61 Copynumber: 2.0 Consensus size: 61
26135679 CCTATTGATG
*
26135689 AGTATATAGAATGTGAATGCATGAATTGATATGAAATTGAATTGATAAGTTGGAGGAACTA
1 AGTATATAGAATGTGAATGCATGAATTGATATGAAATTGAATCGATAAGTTGGAGGAACTA
* * * *
26135750 AGTATATGGAATGTGAATGCATGAATTGATATGAAATTGAATCGGTAGGTTGGTGGAACTA
1 AGTATATAGAATGTGAATGCATGAATTGATATGAAATTGAATCGATAAGTTGGAGGAACTA
26135811 TGGTATGGTT
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
61 56 1.00
ACGTcount: A:0.38, C:0.04, G:0.27, T:0.31
Consensus pattern (61 bp):
AGTATATAGAATGTGAATGCATGAATTGATATGAAATTGAATCGATAAGTTGGAGGAACTA
Found at i:26142619 original size:53 final size:54
Alignment explanation
Indices: 26142508--26142747 Score: 212
Period size: 55 Copynumber: 4.5 Consensus size: 54
26142498 ATTGCCCTGA
* * * * *
26142508 CTTGTCATGGTCTTGCATGGTATCC-T---TT-TGAAACTTACCATTGCCATGT
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTCACCAATGCCATGC
26142557 CTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTCACCAATGCCATGC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTCACCAATGCCATGC
* * * * * *
26142610 CTTGGCATGGTCTTACGTGGGA-CCTTTGCCTTATAGTAAC-CTATCAATGCCATGT
1 CTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTC-ACCAATGCCATGC
* * * * *
26142665 CTTGACATGGTCTTACATGATTTCCTTGCCTTA-AAAACCTTACCAATTGCCATAC
1 CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTCACCAA-TGCCATGC
26142720 CTT-AGCATGGTCTTACATGGTATCCTTG
1 CTTGA-CATGGTCTTACATGGTATCCTTG
26142748 AACCCTAATG
Statistics
Matches: 154, Mismatches: 23, Indels: 22
0.77 0.12 0.11
Matches are distributed among these distances:
49 23 0.15
50 1 0.01
52 2 0.01
53 47 0.31
54 10 0.06
55 69 0.45
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.17, T:0.36
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTCACCAATGCCATGC
Found at i:26146622 original size:85 final size:84
Alignment explanation
Indices: 26146463--26146624 Score: 193
Period size: 85 Copynumber: 1.9 Consensus size: 84
26146453 GTCTGAGACA
** * * *
26146463 TCGTGTAAGACTGTGTCTGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTAGGAC
1 TCGTGTAAGACCCTGTCTGGACAAAGGCATCGATTGAGATTTACATATAAGACCACGTCTAGGAC
*
26146528 ATCGTCATTGTATCTGATT
66 ATCGGCATTGTATCTGATT
* *
26146547 TCGTGTAAGACCCTGTCTGGGACAAAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAAGACCCTGTCT-GGACAAAGGCATCG--ATTGAGATTTACATATAAGACCACGTCTAG
* *
26146610 GGCGTCGGCATTGTA
63 GACATCGGCATTGTA
26146625 CTTGTTTATG
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
84 16 0.25
85 43 0.66
86 1 0.02
87 5 0.08
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (84 bp):
TCGTGTAAGACCCTGTCTGGACAAAGGCATCGATTGAGATTTACATATAAGACCACGTCTAGGAC
ATCGGCATTGTATCTGATT
Found at i:26147761 original size:53 final size:53
Alignment explanation
Indices: 26147673--26147778 Score: 167
Period size: 53 Copynumber: 2.0 Consensus size: 53
26147663 CTGTTTGTCT
* * * *
26147673 GGTAATGCCTCGTAACCCTGATTCGATGTCGGTTACGGGTTAGGGGTGTTACA
1 GGTAATGCCTCGTAACCCTAATCCAATGTCAGTTACGGGTTAGGGGTGTTACA
*
26147726 GGTAATGCCTCGTAACCCTAATCCAATGTTAGTTACGGGTTAGGGGTGTTACA
1 GGTAATGCCTCGTAACCCTAATCCAATGTCAGTTACGGGTTAGGGGTGTTACA
26147779 TAGGGAGTCT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (53 bp):
GGTAATGCCTCGTAACCCTAATCCAATGTCAGTTACGGGTTAGGGGTGTTACA
Found at i:26149359 original size:18 final size:18
Alignment explanation
Indices: 26149312--26149363 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
26149302 TTAGATTAAA
26149312 AGGATAGA-AAATAAAAT
1 AGGATAGATAAATAAAAT
*
26149329 A--ATTGATAAATAAAAT
1 AGGATAGATAAATAAAAT
*
26149345 AGGATAGATAGATAAAAT
1 AGGATAGATAAATAAAAT
26149363 A
1 A
26149364 AGGTCCCCGA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
15 4 0.14
16 10 0.34
17 1 0.03
18 14 0.48
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (18 bp):
AGGATAGATAAATAAAAT
Found at i:26150159 original size:16 final size:17
Alignment explanation
Indices: 26150138--26150170 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26150128 GGTAAGGACT
*
26150138 AAATTAGAA-ATGATAA
1 AAATTAAAAGATGATAA
26150154 AAATTAAAAGATGATAA
1 AAATTAAAAGATGATAA
26150171 CCAATTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (17 bp):
AAATTAAAAGATGATAA
Found at i:26152847 original size:17 final size:17
Alignment explanation
Indices: 26152822--26152867 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
26152812 CCTTCAAATA
* *
26152822 CATGAATCTTTCAA-TT
1 CATGTATCTTCCAAGTT
26152838 CAATGTATCTTCCAAGTT
1 C-ATGTATCTTCCAAGTT
26152856 CATGTATCTTCC
1 CATGTATCTTCC
26152868 TTTCTGATGT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 1 0.04
17 22 0.85
18 3 0.12
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (17 bp):
CATGTATCTTCCAAGTT
Found at i:26166657 original size:22 final size:22
Alignment explanation
Indices: 26166629--26166677 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
26166619 ACCGGGCCGA
26166629 GTATAGGGTGTTACATTTAGTG
1 GTATAGGGTGTTACATTTAGTG
*
26166651 GTATAGGGTGTTACATTTATTG
1 GTATAGGGTGTTACATTTAGTG
26166673 GTATA
1 GTATA
26166678 AGAGCTTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.24, C:0.04, G:0.29, T:0.43
Consensus pattern (22 bp):
GTATAGGGTGTTACATTTAGTG
Found at i:26169450 original size:28 final size:28
Alignment explanation
Indices: 26169394--26169538 Score: 197
Period size: 28 Copynumber: 5.2 Consensus size: 28
26169384 CAGCATGACT
* *
26169394 ACCAG-AACAGATA-TTGTGACAGAGTC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
* *
26169420 ACCAGATACAGATAATTGTGGCA-AGGCC
1 ACCAGAAACAGATATTTGTGGCAGA-GCC
* *
26169448 ACCAGAAACAGATATTTGCGGTAGAGCC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
26169476 ACCAGAAACAGATATTTGTGGCAGAGCC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
*
26169504 ACCAGAAACAGATATTTATGGCAGAGCC
1 ACCAGAAACAGATATTTGTGGCAGAGCC
26169532 ACCAGAA
1 ACCAGAA
26169539 CGCTTCCTCC
Statistics
Matches: 105, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
26 5 0.05
27 8 0.08
28 91 0.87
29 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.17
Consensus pattern (28 bp):
ACCAGAAACAGATATTTGTGGCAGAGCC
Found at i:26170613 original size:17 final size:17
Alignment explanation
Indices: 26170591--26170623 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26170581 TCGGCTATGG
26170591 AGAAAAGAAAAGATGAA
1 AGAAAAGAAAAGATGAA
26170608 AGAAAAGAAAAGATGA
1 AGAAAAGAAAAGATGA
26170624 GAAGGGAAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.70, C:0.00, G:0.24, T:0.06
Consensus pattern (17 bp):
AGAAAAGAAAAGATGAA
Found at i:26177295 original size:28 final size:28
Alignment explanation
Indices: 26177237--26177375 Score: 154
Period size: 28 Copynumber: 5.0 Consensus size: 28
26177227 GACTGCTAGG
* ** *
26177237 ACAGATA-TTGTGACAGAATCACCAGAT
1 ACAGATATTTGTGGCAGAGCCACCAGAA
* * * *
26177264 ACAGATAATTATGGCAGGGCCACCAAAA
1 ACAGATATTTGTGGCAGAGCCACCAGAA
**
26177292 ACAGATATTTGTGGTTGAGCCACCAGAA
1 ACAGATATTTGTGGCAGAGCCACCAGAA
* *
26177320 ATAGATATTTGTGGTAGAGCCACCAGAA
1 ACAGATATTTGTGGCAGAGCCACCAGAA
*
26177348 ACAGATATTTGTGGCAGAGCCACTAGAA
1 ACAGATATTTGTGGCAGAGCCACCAGAA
26177376 CGCTTCCACC
Statistics
Matches: 93, Mismatches: 18, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
27 7 0.08
28 86 0.92
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (28 bp):
ACAGATATTTGTGGCAGAGCCACCAGAA
Found at i:26179749 original size:16 final size:17
Alignment explanation
Indices: 26179723--26179754 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26179713 GTGCAAAAGT
26179723 AGTGTTCTAATAGCTAA
1 AGTGTTCTAATAGCTAA
26179740 AGTG-TCTAATAGCTA
1 AGTGTTCTAATAGCTA
26179755 TGCAACCTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (17 bp):
AGTGTTCTAATAGCTAA
Found at i:26181338 original size:46 final size:45
Alignment explanation
Indices: 26181285--26181456 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 45
26181275 TGGGTATCCA
26181285 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCATTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCA-TCG
*** * **
26181331 AACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACT-AGGCATCTG
1 AACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGTGA-GCATC-G
* * ** *
26181378 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATACCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCA-TCG
* *
26181424 AGCTCGTTGAGTTGAGTCTGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26181457 GCAGGTTACA
Statistics
Matches: 103, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
46 67 0.65
47 36 0.35
ACGTcount: A:0.22, C:0.18, G:0.29, T:0.31
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGTGAGCATCG
Found at i:26182235 original size:22 final size:20
Alignment explanation
Indices: 26182205--26182249 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 20
26182195 TTGGCCGAAT
26182205 AGAAGAAAGAAAGGAAGGGAA
1 AGAAGAAAGAAAGGAA-GGAA
26182226 AGAAGGAAAGAAAGGAAGGAA
1 AGAA-GAAAGAAAGGAAGGAA
26182247 AGA
1 AGA
26182250 GCTTGGAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (20 bp):
AGAAGAAAGAAAGGAAGGAA
Found at i:26182247 original size:13 final size:13
Alignment explanation
Indices: 26182209--26182249 Score: 54
Period size: 13 Copynumber: 3.5 Consensus size: 13
26182199 CCGAATAGAA
26182209 GAAAGAAAGGAAG
1 GAAAGAAAGGAAG
26182222 G---GAAA-GAAG
1 GAAAGAAAGGAAG
26182231 GAAAGAAAGGAAG
1 GAAAGAAAGGAAG
26182244 GAAAGA
1 GAAAGA
26182250 GCTTGGAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
9 5 0.21
10 4 0.17
12 4 0.17
13 11 0.46
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (13 bp):
GAAAGAAAGGAAG
Found at i:26183652 original size:40 final size:40
Alignment explanation
Indices: 26183594--26183785 Score: 303
Period size: 40 Copynumber: 4.8 Consensus size: 40
26183584 CGGATGATAA
26183594 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * *
26183634 CCAGGCTAAGCCCCGAAGGCATTTGTACGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
*
26183674 CTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
* * ***
26183714 TCGGGCTAAGTCCCGAAGGCATTTGTGCGAGCTACTAAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
26183754 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGT
26183786 AGCTATATCC
Statistics
Matches: 137, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 137 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTT
Found at i:26183729 original size:80 final size:80
Alignment explanation
Indices: 26183592--26183811 Score: 309
Period size: 80 Copynumber: 2.8 Consensus size: 80
26183582 CTCGGATGAT
26183592 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCAGGCTAAGCCCCGAAGGCATT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCAGGCTAAGCCCCGAAGGCATT
* *
26183657 TGTACGAGTTACTAT
66 TGTACGAGCTACTAA
** * * * *
26183672 TTCTGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTTCGGGCTAAGTCCCGAAGGCATT
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCAGGCTAAGCCCCGAAGGCATT
*
26183737 TGTGCGAGCTACTAA
66 TGTACGAGCTACTAA
* * *
26183752 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TAGCTATATCC-GGCAAAACCCCGAAGG
1 AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATTTCCAGGCTAAGCCCCGAAGG
26183812 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
79 15 0.12
80 107 0.88
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (80 bp):
AACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATTTCCAGGCTAAGCCCCGAAGGCATT
TGTACGAGCTACTAA
Found at i:26198715 original size:45 final size:45
Alignment explanation
Indices: 26198607--26198726 Score: 129
Period size: 47 Copynumber: 2.6 Consensus size: 45
26198597 TGGTTGAGTT
* *
26198607 CCGAGCTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTCATGAGATGGAACTA-GCA
* *
26198653 TCCGAGCTCGTTAAGTTGAGTCCGAGTTCATTATGGATGCGAA-T-GC-
1 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCATGA--GATG-GAACTAGCA
*
26198699 CCGAGCTCGTTGAGTTGATTCCGAGTTC
1 CCGAGCTCGTTGAGTTGAGTCCGAGTTC
26198727 GTTTATGGGC
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
45 26 0.41
47 31 0.48
49 5 0.08
50 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (45 bp):
CCGAGCTCGTTGAGTTGAGTCCGAGTTCATGAGATGGAACTAGCA
Found at i:26210474 original size:18 final size:18
Alignment explanation
Indices: 26210451--26210500 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
26210441 GGACGTGTCG
26210451 TTCATTTTCAAAACGTAA
1 TTCATTTTCAAAACGTAA
* *
26210469 TTCATTATCACAAA-GTTA
1 TTCATTTTCA-AAACGTAA
*
26210487 TTCTTTTTCAAAAC
1 TTCATTTTCAAAAC
26210501 ATTATTTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 3 0.12
18 20 0.77
19 3 0.12
ACGTcount: A:0.36, C:0.18, G:0.04, T:0.42
Consensus pattern (18 bp):
TTCATTTTCAAAACGTAA
Found at i:26220923 original size:28 final size:28
Alignment explanation
Indices: 26220857--26220984 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
26220847 CATGAGATTG
* * **
26220857 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
26220886 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26220914 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
26220943 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26220971 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
26220985 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:26220946 original size:57 final size:57
Alignment explanation
Indices: 26220857--26220984 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
26220847 CATGAGATTG
*
26220857 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
26220914 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
26220971 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
26220985 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:26228979 original size:28 final size:28
Alignment explanation
Indices: 26228913--26229040 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
26228903 CATGAGATTG
* * **
26228913 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
26228942 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26228970 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
26228999 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26229027 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
26229041 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:26229002 original size:57 final size:57
Alignment explanation
Indices: 26228913--26229040 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
26228903 CATGAGATTG
*
26228913 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
26228970 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
26229027 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
26229041 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:26234015 original size:13 final size:13
Alignment explanation
Indices: 26233997--26234023 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26233987 AAAGCAATCG
26233997 CACATGGGCGTGT
1 CACATGGGCGTGT
26234010 CACATGGGCGTGT
1 CACATGGGCGTGT
26234023 C
1 C
26234024 CCTGTCGAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.26, G:0.37, T:0.22
Consensus pattern (13 bp):
CACATGGGCGTGT
Found at i:26235679 original size:17 final size:18
Alignment explanation
Indices: 26235657--26235690 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26235647 CACATCAAAG
26235657 TGTTTT-ATCGAAAACCT
1 TGTTTTCATCGAAAACCT
*
26235674 TGTTTTCATTGAAAACC
1 TGTTTTCATCGAAAACC
26235691 CTTCCTTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (18 bp):
TGTTTTCATCGAAAACCT
Found at i:26238173 original size:40 final size:40
Alignment explanation
Indices: 26238118--26238274 Score: 253
Period size: 40 Copynumber: 3.9 Consensus size: 40
26238108 GGGATTTAAT
* * *
26238118 CGGATATAGCT-ACTCGCTCGAATGCCTTCGGGACATAGCC
1 CGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGCC
*
26238158 CGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
*
26238198 CGGATATAGTAACTCGCACAAATGCCTTCAGGACTTAGCC
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
26238238 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
1 CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTA
26238275 NNNNNNNNNN
Statistics
Matches: 110, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 109 0.99
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCC
Found at i:26239749 original size:29 final size:29
Alignment explanation
Indices: 26239688--26239776 Score: 128
Period size: 29 Copynumber: 3.1 Consensus size: 29
26239678 TACATCCATG
* *
26239688 CATATGGCCCACTAGGCCC--ATCTCATT
1 CATATGGCCCATTAGGCCCAAATCACATT
*
26239715 CATATGGTCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
*
26239744 CGTATGGCCCATTAGGCCCAAATCACATT
1 CATATGGCCCATTAGGCCCAAATCACATT
26239773 CATA
1 CATA
26239777 GTCATGTTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 17 0.31
29 37 0.69
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
CATATGGCCCATTAGGCCCAAATCACATT
Found at i:26242347 original size:47 final size:45
Alignment explanation
Indices: 26242202--26242465 Score: 184
Period size: 47 Copynumber: 5.7 Consensus size: 45
26242192 TATACGTGCT
* ** *
26242202 GATGCATGTCCCAGACATGTCTTACACTAGCACGAAACT-TA-G-C
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC-TCACTCAATGCC
* *
26242245 GAATGCATGTCCCAGACACGTCTTACACTGGCTAACATCA-TCAAGGCC
1 G-ATGCATGTCCCAGACATGTCTTACACTGGC--AC-TCACTCAATGCC
* * *
26242293 GATCCATGTCCTAGACATGTCTTACACTGGCACTCACCTCTATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCA-CTCAATGCC
* *
26242339 GATGCCATGTCCCAGACGTGGTCTTACAC-GAGCTA-TCA-T-GATGCGGC
1 GATG-CATGTCCCAGACAT-GTCTTACACTG-GC-ACTCACTCAATGC--C
* * * *
26242386 TGATGCATGTCCCAAACACGTCTTACACTAGCCCTCATCTCAATGCC
1 -GATGCATGTCCCAGACATGTCTTACACTGGCACTCA-CTCAATGCC
*
26242433 GATGCCATGTCCCAGACATGGTCTTATACTGGC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC
26242466 TTTCACATAA
Statistics
Matches: 174, Mismatches: 25, Indels: 39
0.73 0.11 0.16
Matches are distributed among these distances:
43 1 0.01
44 31 0.18
45 7 0.04
46 32 0.18
47 66 0.38
48 32 0.18
49 5 0.03
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCACTCAATGCC
Found at i:26242395 original size:94 final size:93
Alignment explanation
Indices: 26242155--26242458 Score: 305
Period size: 94 Copynumber: 3.2 Consensus size: 93
26242145 AGTTGCCGCA
* * * * *
26242155 GCCATGTCCTAGACATGGTCTTACACTAGTTCTCGTGTATACGTGCTGATGCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACGAGCTATCATG-AT-CG-GCTGATGCATGTCCCAGACAT
**
26242220 GTCTTACACTAGCACGAAACT-TA-G-CGAAT
63 GTCTTACACTAGCACTCAACTCTATGCCG-AT
* * * * * *
26242249 G-CATGTCCCAGACA-CGTCTTACACTG-GCTAACATCATCAAGGCCGATCCATGTCCTAGACAT
1 GCCATGTCCCAGACATGGTCTTACAC-GAGCTATCATGATC--GGCTGATGCATGTCCCAGACAT
* *
26242311 GTCTTACACTGGCACTCACCTCTATGCCGAT
63 GTCTTACACTAGCACTCAACTCTATGCCGAT
* * *
26242342 GCCATGTCCCAGACGTGGTCTTACACGAGCTATCATGATGCGGCTGATGCATGTCCCAAACACGT
1 GCCATGTCCCAGACATGGTCTTACACGAGCTATCATGAT-CGGCTGATGCATGTCCCAGACATGT
* * *
26242407 CTTACACTAGCCCTCATCTCAATGCCGAT
65 CTTACACTAGCACTCAACTCTATGCCGAT
26242436 GCCATGTCCCAGACATGGTCTTA
1 GCCATGTCCCAGACATGGTCTTA
26242459 TACTGGCTTT
Statistics
Matches: 171, Mismatches: 29, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
90 1 0.01
91 37 0.22
92 16 0.09
93 16 0.09
94 82 0.48
95 18 0.11
96 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (93 bp):
GCCATGTCCCAGACATGGTCTTACACGAGCTATCATGATCGGCTGATGCATGTCCCAGACATGTC
TTACACTAGCACTCAACTCTATGCCGAT
Found at i:26245983 original size:15 final size:15
Alignment explanation
Indices: 26245960--26245990 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26245950 TCAAAAATTC
26245960 CAATACAAAACATAT
1 CAATACAAAACATAT
*
26245975 CAATCCAAAACATAT
1 CAATACAAAACATAT
26245990 C
1 C
26245991 TTTCATATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (15 bp):
CAATACAAAACATAT
Found at i:26248466 original size:44 final size:44
Alignment explanation
Indices: 26248336--26248487 Score: 145
Period size: 44 Copynumber: 3.5 Consensus size: 44
26248326 GTCTCGGATG
* * * *
26248336 TGGTCTTACATGTAAT-TCAG-TATCGAAGCCTCTGTCCCAGACA
1 TGGTCTTACACGAAATCTCAGATA-CGAGGCCTATGTCCCAGACA
* * *
26248379 GGGTCTTACACGAAAT-T-AGATACGATGCCTATGTCCCATACA
1 TGGTCTTACACGAAATCTCAGATACGAGGCCTATGTCCCAGACA
* *
26248421 TGGTCTTACACGTAAATCTCA-ACT-CGAGGCTTGTGTCCCAGACA
1 TGGTCTTACACG-AAATCTCAGA-TACGAGGCCTATGTCCCAGACA
*
26248465 TGGTCTTACACGATATCTCAGAT
1 TGGTCTTACACGAAATCTCAGAT
26248488 CAATGTCAAC
Statistics
Matches: 91, Mismatches: 12, Indels: 12
0.79 0.10 0.10
Matches are distributed among these distances:
42 30 0.33
43 28 0.31
44 31 0.34
45 2 0.02
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (44 bp):
TGGTCTTACACGAAATCTCAGATACGAGGCCTATGTCCCAGACA
Found at i:26268840 original size:43 final size:42
Alignment explanation
Indices: 26268793--26268887 Score: 120
Period size: 42 Copynumber: 2.2 Consensus size: 42
26268783 GAATGTGGTA
* *
26268793 TTACATGTAATTCAG-TATCGAAGCCTCTGTCCCAGACAGGGTC
1 TTACACGTAATT-AGATA-CGAAGCCTATGTCCCAGACAGGGTC
* * *
26268836 TTACACGAAATTAGATACGATGCCTATGTCCCAGACATGGTC
1 TTACACGTAATTAGATACGAAGCCTATGTCCCAGACAGGGTC
26268878 TTACACGTAA
1 TTACACGTAA
26268888 ATCTCAACTC
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 33 0.73
43 12 0.27
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
TTACACGTAATTAGATACGAAGCCTATGTCCCAGACAGGGTC
Found at i:26268916 original size:44 final size:44
Alignment explanation
Indices: 26268815--26268939 Score: 132
Period size: 44 Copynumber: 2.9 Consensus size: 44
26268805 CAGTATCGAA
* * *
26268815 GCCTCTGTCCCAGACAGGGTCTTACACGAAAT-T-AGATACGAT
1 GCCTATGTCCCAGACACGGTCTTACACGAAATCTCAGATACGAG
*
26268857 GCCTATGTCCCAGACATGGTCTTACACGTAAATCTCA-ACT-CGAG
1 GCCTATGTCCCAGACACGGTCTTACACG-AAATCTCAGA-TACGAG
* * * *
26268901 GCTTGTGTCCCAGACACAGTCTTACACGATATCTCAGAT
1 GCCTATGTCCCAGACACGGTCTTACACGAAATCTCAGAT
26268940 CAATGTAACA
Statistics
Matches: 70, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
42 26 0.37
43 12 0.17
44 30 0.43
45 2 0.03
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (44 bp):
GCCTATGTCCCAGACACGGTCTTACACGAAATCTCAGATACGAG
Found at i:26275712 original size:50 final size:50
Alignment explanation
Indices: 26275653--26275756 Score: 208
Period size: 50 Copynumber: 2.1 Consensus size: 50
26275643 ACATACTCAA
26275653 TCAAAATAAACTAACACAAAGGCTAGTCTATACATGCCATAAGTTAGAAT
1 TCAAAATAAACTAACACAAAGGCTAGTCTATACATGCCATAAGTTAGAAT
26275703 TCAAAATAAACTAACACAAAGGCTAGTCTATACATGCCATAAGTTAGAAT
1 TCAAAATAAACTAACACAAAGGCTAGTCTATACATGCCATAAGTTAGAAT
26275753 TCAA
1 TCAA
26275757 CTTATAAAGT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 54 1.00
ACGTcount: A:0.46, C:0.18, G:0.12, T:0.24
Consensus pattern (50 bp):
TCAAAATAAACTAACACAAAGGCTAGTCTATACATGCCATAAGTTAGAAT
Found at i:26278368 original size:736 final size:736
Alignment explanation
Indices: 26276958--26278431 Score: 2948
Period size: 736 Copynumber: 2.0 Consensus size: 736
26276948 AAAATTTGAG
26276958 TATACCATGCTTAGGACGAATCTTCCTTGTGTTTATACAAGTCCATATATTTCATTTATTTCACA
1 TATACCATGCTTAGGACGAATCTTCCTTGTGTTTATACAAGTCCATATATTTCATTTATTTCACA
26277023 TTTTAGTCCCTCAATTTCTTATTTTTGTAATTTAGTCCTAATTACTCAAAATCATCAAAAATTCC
66 TTTTAGTCCCTCAATTTCTTATTTTTGTAATTTAGTCCTAATTACTCAAAATCATCAAAAATTCC
26277088 AATACAAAACATGTCAATCCAAAACATATCTTTCATATTTCATCAACTAACATCACAAAGATCAA
131 AATACAAAACATGTCAATCCAAAACATATCTTTCATATTTCATCAACTAACATCACAAAGATCAA
26277153 ATATTCATCAATGAGATAACTCAAAATATCCATCAAAATAAAAAATTCAAGCATGGGCTTTGTAG
196 ATATTCATCAATGAGATAACTCAAAATATCCATCAAAATAAAAAATTCAAGCATGGGCTTTGTAG
26277218 ATAACTTGGCAACGATCTTAAAAATGTAAAAATTATCAAAAACCGAGCTAGTTACATTCCTTGAT
261 ATAACTTGGCAACGATCTTAAAAATGTAAAAATTATCAAAAACCGAGCTAGTTACATTCCTTGAT
26277283 TAAGCTATCAGCAATGGTTGAACCTATGGAAGCTTTATTTCTTTTTTCTTTTCTTTATATTCGGT
326 TAAGCTATCAGCAATGGTTGAACCTATGGAAGCTTTATTTCTTTTTTCTTTTCTTTATATTCGGT
26277348 CATGCAAGAATTTGAACACTTATGGCTTTTAATTTATGTTATAATATATCATATATATTATTTAC
391 CATGCAAGAATTTGAACACTTATGGCTTTTAATTTATGTTATAATATATCATATATATTATTTAC
26277413 TATTTTACATATTTAACCTTTAAAATTTAATTAGAAAACCATATAAAACATGTCCAAAACCGTCC
456 TATTTTACATATTTAACCTTTAAAATTTAATTAGAAAACCATATAAAACATGTCCAAAACCGTCC
26277478 ACTCCTATATTCAATGGCATAATTGCATTATAAATACTTCATATTAATAAGACAAGTCTAATTCA
521 ACTCCTATATTCAATGGCATAATTGCATTATAAATACTTCATATTAATAAGACAAGTCTAATTCA
26277543 ACCTCGACATATTTAACCACTAAATTTTTATTTTACGCGATTAATCCCTTTTATTAAATCGGACA
586 ACCTCGACATATTTAACCACTAAATTTTTATTTTACGCGATTAATCCCTTTTATTAAATCGGACA
26277608 CTCAAATGAAAAAATTAAATCACGAAAATTTCTCATATATAAATTCACACAAAATAAACACAGAA
651 CTCAAATGAAAAAATTAAATCACGAAAATTTCTCATATATAAATTCACACAAAATAAACACAGAA
26277673 AATAATTTTAAAATATTTTTC
716 AATAATTTTAAAATATTTTTC
26277694 TATACCATGCTTAGGACGAATCTTCCTTGTGTTTATACAAGTCCATATATTTCATTTATTTCACA
1 TATACCATGCTTAGGACGAATCTTCCTTGTGTTTATACAAGTCCATATATTTCATTTATTTCACA
26277759 TTTTAGTCCCTCAATTTCTTATTTTTGTAATTTAGTCCTAATTACTCAAAATCATCAAAAATTCC
66 TTTTAGTCCCTCAATTTCTTATTTTTGTAATTTAGTCCTAATTACTCAAAATCATCAAAAATTCC
26277824 AATACAAAACATGTCAATCCAAAACATATCTTTCATATTTCATCAACTAACATCACAAAGATCAA
131 AATACAAAACATGTCAATCCAAAACATATCTTTCATATTTCATCAACTAACATCACAAAGATCAA
26277889 ATATTCATCAATGAGATAACTCAAAATATCCATCAAAATAAAAAATTCAAGCATGGGCTTTGTAG
196 ATATTCATCAATGAGATAACTCAAAATATCCATCAAAATAAAAAATTCAAGCATGGGCTTTGTAG
26277954 ATAACTTGGCAACGATCTTAAAAATGTAAAAATTATCAAAAACCGAGCTAGTTACATTCCTTGAT
261 ATAACTTGGCAACGATCTTAAAAATGTAAAAATTATCAAAAACCGAGCTAGTTACATTCCTTGAT
26278019 TAAGCTATCAGCAATGGTTGAACCTATGGAAGCTTTATTTCTTTTTTCTTTTCTTTATATTCGGT
326 TAAGCTATCAGCAATGGTTGAACCTATGGAAGCTTTATTTCTTTTTTCTTTTCTTTATATTCGGT
26278084 CATGCAAGAATTTGAACACTTATGGCTTTTAATTTATGTTATAATATATCATATATATTATTTAC
391 CATGCAAGAATTTGAACACTTATGGCTTTTAATTTATGTTATAATATATCATATATATTATTTAC
26278149 TATTTTACATATTTAACCTTTAAAATTTAATTAGAAAACCATATAAAACATGTCCAAAACCGTCC
456 TATTTTACATATTTAACCTTTAAAATTTAATTAGAAAACCATATAAAACATGTCCAAAACCGTCC
26278214 ACTCCTATATTCAATGGCATAATTGCATTATAAATACTTCATATTAATAAGACAAGTCTAATTCA
521 ACTCCTATATTCAATGGCATAATTGCATTATAAATACTTCATATTAATAAGACAAGTCTAATTCA
26278279 ACCTCGACATATTTAACCACTAAATTTTTATTTTACGCGATTAATCCCTTTTATTAAATCGGACA
586 ACCTCGACATATTTAACCACTAAATTTTTATTTTACGCGATTAATCCCTTTTATTAAATCGGACA
26278344 CTCAAATGAAAAAATTAAATCACGAAAATTTCTCATATATAAATTCACACAAAATAAACACAGAA
651 CTCAAATGAAAAAATTAAATCACGAAAATTTCTCATATATAAATTCACACAAAATAAACACAGAA
26278409 AATAATTTTAAAATATTTTTC
716 AATAATTTTAAAATATTTTTC
26278430 TA
1 TA
26278432 ACTCAGATTC
Statistics
Matches: 738, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
736 738 1.00
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.36
Consensus pattern (736 bp):
TATACCATGCTTAGGACGAATCTTCCTTGTGTTTATACAAGTCCATATATTTCATTTATTTCACA
TTTTAGTCCCTCAATTTCTTATTTTTGTAATTTAGTCCTAATTACTCAAAATCATCAAAAATTCC
AATACAAAACATGTCAATCCAAAACATATCTTTCATATTTCATCAACTAACATCACAAAGATCAA
ATATTCATCAATGAGATAACTCAAAATATCCATCAAAATAAAAAATTCAAGCATGGGCTTTGTAG
ATAACTTGGCAACGATCTTAAAAATGTAAAAATTATCAAAAACCGAGCTAGTTACATTCCTTGAT
TAAGCTATCAGCAATGGTTGAACCTATGGAAGCTTTATTTCTTTTTTCTTTTCTTTATATTCGGT
CATGCAAGAATTTGAACACTTATGGCTTTTAATTTATGTTATAATATATCATATATATTATTTAC
TATTTTACATATTTAACCTTTAAAATTTAATTAGAAAACCATATAAAACATGTCCAAAACCGTCC
ACTCCTATATTCAATGGCATAATTGCATTATAAATACTTCATATTAATAAGACAAGTCTAATTCA
ACCTCGACATATTTAACCACTAAATTTTTATTTTACGCGATTAATCCCTTTTATTAAATCGGACA
CTCAAATGAAAAAATTAAATCACGAAAATTTCTCATATATAAATTCACACAAAATAAACACAGAA
AATAATTTTAAAATATTTTTC
Found at i:26280851 original size:46 final size:40
Alignment explanation
Indices: 26280748--26280851 Score: 109
Period size: 40 Copynumber: 2.5 Consensus size: 40
26280738 TTGACTAAGA
* *
26280748 ATGGCACTTAGTGTGCGGTTTGAAATAGCTTCGAGTAAAT
1 ATGGCACTTAGTGTGCGATTTGAAATAGCTTCGAATAAAT
* * *
26280788 ATGGCATTTGGTGTGCGATTTGAGATAGCTTCGACTATATATAT
1 ATGGCACTTAGTGTGCGATTTGAAATAGCTTCGA--ATA-A-AT
26280832 ATGTGGCACTTAGTGTGCGA
1 A--TGGCACTTAGTGTGCGA
26280852 AATATTGAGA
Statistics
Matches: 51, Mismatches: 7, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
40 30 0.59
42 2 0.04
43 1 0.02
44 3 0.06
46 15 0.29
ACGTcount: A:0.25, C:0.12, G:0.28, T:0.35
Consensus pattern (40 bp):
ATGGCACTTAGTGTGCGATTTGAAATAGCTTCGAATAAAT
Found at i:26280869 original size:28 final size:28
Alignment explanation
Indices: 26280838--26280907 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
26280828 ATATATGTGG
26280838 CACTTAGTGTGCGAAATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
* * *
26280866 CACTTGGTGTGTC-AGATATTGAGTATGA
1 CACTTAGTGTG-CGAAATATTGAGAATGA
*
26280894 AACTTAGTGTGCGA
1 CACTTAGTGTGCGA
26280908 GACATCGAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 1 0.03
28 33 0.94
29 1 0.03
ACGTcount: A:0.30, C:0.11, G:0.27, T:0.31
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:26289541 original size:27 final size:26
Alignment explanation
Indices: 26289472--26289746 Score: 250
Period size: 27 Copynumber: 10.3 Consensus size: 26
26289462 GGGTCGAAAT
26289472 AATGACTGAAATACCCCCAT-GGGTAA
1 AATGACT-AAATACCCCCATAGGGTAA
* *
26289498 AATGATCGAAATACCCTCATAGGGT-A
1 AATGA-CTAAATACCCCCATAGGGTAA
* * *
26289524 AATGACCTAAATACCCCTATATGATAA
1 AATGA-CTAAATACCCCCATAGGGTAA
*
26289551 AATGACCAAAATACCCCCATAGGGTAA
1 AATGA-CTAAATACCCCCATAGGGTAA
*
26289578 AATGATCGAAATACCCCCATAGGGTAA
1 AATGA-CTAAATACCCCCATAGGGTAA
* * *
26289605 AATAACCGAAATACCCTCATAGGGTAA
1 AATGA-CTAAATACCCCCATAGGGTAA
* *
26289632 AATGACTGAAATACCCTCATAGGATAA
1 AATGACT-AAATACCCCCATAGGGTAA
*
26289659 AATGATTGAAATACCCCCAT-GGGATAA
1 AATGACT-AAATACCCCCATAGGG-TAA
* * *
26289686 AATGACTAAAATACCTCAATAAGGTAA
1 AATGACT-AAATACCCCCATAGGGTAA
* ** *
26289713 AATGACTGTAATACCCCTGTAAGGTAA
1 AATGACT-AAATACCCCCATAGGGTAA
26289740 AATGACT
1 AATGACT
26289747 GATTTGCCCT
Statistics
Matches: 210, Mismatches: 33, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
26 39 0.19
27 169 0.80
28 2 0.01
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (26 bp):
AATGACTAAATACCCCCATAGGGTAA
Found at i:26289606 original size:54 final size:54
Alignment explanation
Indices: 26289472--26289748 Score: 303
Period size: 54 Copynumber: 5.2 Consensus size: 54
26289462 GGGTCGAAAT
* *
26289472 AATGACTGAAATACCCCCAT-GGGTAAAATGATCGAAATACCCTCATAGGGT-A
1 AATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAA
* * * *
26289524 AATGACCT-AAATACCCCTATATGATAAAATGACCAAAATACCCCCATAGGGTAA
1 AATGA-CTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAA
* *
26289578 AATGA-TCGAAATACCCCCATAGGGTAAAATAACCGAAATACCCTCATAGGGTAA
1 AATGACT-GAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAA
* * **
26289632 AATGACTGAAATACCCTCATAGGATAAAATGATTGAAATACCCCCAT-GGGATAA
1 AATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGG-TAA
* * * * * * ** *
26289686 AATGACTAAAATACCTCAATAAGGTAAAATGACTGTAATACCCCTGTAAGGTAA
1 AATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAA
26289740 AATGACTGA
1 AATGACTGA
26289749 TTTGCCCTAC
Statistics
Matches: 187, Mismatches: 30, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
52 17 0.09
53 31 0.17
54 136 0.73
55 3 0.02
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (54 bp):
AATGACTGAAATACCCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAA
Found at i:26289660 original size:81 final size:82
Alignment explanation
Indices: 26289472--26289744 Score: 333
Period size: 81 Copynumber: 3.4 Consensus size: 82
26289462 GGGTCGAAAT
* *
26289472 AATGACTGAAATACCCCCAT-GGGTAAAATGATCGAAATACCCTCATAGGGT-AAATGACCTAAA
1 AATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACCAAAA
* * *
26289535 TACCC-CTATATGATAA
66 TACCCTCAATAAGGTAA
** * *
26289551 AATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATAACCGAAA
1 AATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACCAAAA
*
26289616 TACCCTC-ATAGGGTAA
66 TACCCTCAATAAGGTAA
* * * *
26289632 AATGACTGAAATACCCTCATAGGATAAAATGATTGAAATACCCCCAT-GGGATAAAATGACTAAA
1 AATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGG-TAAAATGACCAAA
26289696 ATA-CCTCAATAAGGTAA
65 ATACCCTCAATAAGGTAA
* ** *
26289713 AATGACTGTAATACCCCTGTAAGGTAAAATGA
1 AATGACTGAAATACCCCCATAGGGTAAAATGA
26289745 CTGATTTGCC
Statistics
Matches: 167, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
79 18 0.11
80 37 0.22
81 111 0.66
82 1 0.01
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (82 bp):
AATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACCAAAA
TACCCTCAATAAGGTAA
Found at i:26299361 original size:13 final size:13
Alignment explanation
Indices: 26299343--26299367 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26299333 TTAGCCAAAT
26299343 ACAAATATGTTTA
1 ACAAATATGTTTA
26299356 ACAAATATGTTT
1 ACAAATATGTTT
26299368 TAGCAGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.40
Consensus pattern (13 bp):
ACAAATATGTTTA
Found at i:26302167 original size:20 final size:21
Alignment explanation
Indices: 26302134--26302172 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
26302124 GACATTTGTT
* *
26302134 TTTTTTTTTAAATTTTTATAC
1 TTTTATTTTAAATTATTATAC
26302155 TTTTATTTT-AATTATTAT
1 TTTTATTTTAAATTATTAT
26302173 TGTCAAATGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTATTTTAAATTATTATAC
Found at i:26303368 original size:19 final size:20
Alignment explanation
Indices: 26303325--26303380 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
26303315 ATTGGGCCTT
26303325 GCCCATATCAACACAGTTGG
1 GCCCATATCAACACAGTTGG
* *
26303345 GCCCATGTCAATACAGTT-G
1 GCCCATATCAACACAGTTGG
* *
26303364 GCCCATAACAAAACAGT
1 GCCCATATCAACACAGT
26303381 CTCATATGAT
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 15 0.48
20 16 0.52
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.20
Consensus pattern (20 bp):
GCCCATATCAACACAGTTGG
Found at i:26303717 original size:26 final size:26
Alignment explanation
Indices: 26303674--26303735 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
26303664 ATTAACCCTA
* * *
26303674 AGGGTATAACGGTCATTTT-ACACCT
1 AGGGTAAAATGGTAATTTTCACACCT
* *
26303699 AGGGGTAAAATGGTAATTTTCATACTT
1 A-GGGTAAAATGGTAATTTTCACACCT
26303726 AGGGTAAAAT
1 AGGGTAAAAT
26303736 TCATTATTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
25 1 0.03
26 24 0.80
27 5 0.17
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.32
Consensus pattern (26 bp):
AGGGTAAAATGGTAATTTTCACACCT
Done.