Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 81 of 186
Found at i:26306520 original size:13 final size:13
Alignment explanation
Indices: 26306502--26306526 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26306492 TAGTTTACTA
26306502 AAATTATTATAAC
1 AAATTATTATAAC
26306515 AAATTATTATAA
1 AAATTATTATAA
26306527 TTAATATTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.04, G:0.00, T:0.40
Consensus pattern (13 bp):
AAATTATTATAAC
Found at i:26309843 original size:28 final size:28
Alignment explanation
Indices: 26309782--26309846 Score: 94
Period size: 28 Copynumber: 2.3 Consensus size: 28
26309772 TCAATGTACG
* **
26309782 AAATATTGAGAATGGCACTTAGTGTGTG
1 AAATATTGAGAATGACACTTAGTGTGCA
*
26309810 AGATATTGAGAATGACACTTAGTGTGCA
1 AAATATTGAGAATGACACTTAGTGTGCA
26309838 AAATATTGA
1 AAATATTGA
26309847 ATGATTCAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.37, C:0.08, G:0.25, T:0.31
Consensus pattern (28 bp):
AAATATTGAGAATGACACTTAGTGTGCA
Found at i:26315478 original size:28 final size:28
Alignment explanation
Indices: 26315432--26315506 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
26315422 TCAAATATGG
* * *
26315432 CACTCAGTGTACGAAATATTGAGAATGT
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
26315460 CACTTAGTGTGCGAGATATTGAGAATGA
1 CACTTAGTGTGCGAAATATTGAGAATGA
*
26315488 CACTTAGTGTGCAAAATAT
1 CACTTAGTGTGCGAAATAT
26315507 CAAATGATTC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (28 bp):
CACTTAGTGTGCGAAATATTGAGAATGA
Found at i:26316567 original size:41 final size:41
Alignment explanation
Indices: 26316522--26316603 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
26316512 AATGAGTATG
*
26316522 TATTTAAAGCCATGCGAAATTGACTTGCTTATTATGCTTAA
1 TATTTAAAGCCATGCGAAAATGACTTGCTTATTATGCTTAA
26316563 TATTTAAAGCCATGCGAAAATGACTTGCTTATTATGCTTAA
1 TATTTAAAGCCATGCGAAAATGACTTGCTTATTATGCTTAA
26316604 GTTTGGTATT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (41 bp):
TATTTAAAGCCATGCGAAAATGACTTGCTTATTATGCTTAA
Found at i:26320226 original size:20 final size:20
Alignment explanation
Indices: 26320201--26320248 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
26320191 CATGGCACAT
26320201 GCCCGTGTTCCCCAATTTCA
1 GCCCGTGTTCCCCAATTTCA
* *
26320221 GCCCGTGTTCCCTAGTTTCA
1 GCCCGTGTTCCCCAATTTCA
*
26320241 ACCCGTGT
1 GCCCGTGT
26320249 GATTCGTGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.12, C:0.38, G:0.19, T:0.31
Consensus pattern (20 bp):
GCCCGTGTTCCCCAATTTCA
Found at i:26320336 original size:13 final size:13
Alignment explanation
Indices: 26320318--26320358 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
26320308 GCGTGTGGGT
*
26320318 TCACACGGCCGTG
1 TCACACGACCGTG
26320331 TCACACGACCGTG
1 TCACACGACCGTG
26320344 TCACACGACCGTG
1 TCACACGACCGTG
26320357 TC
1 TC
26320359 TAGCTTCGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.20, C:0.39, G:0.24, T:0.17
Consensus pattern (13 bp):
TCACACGACCGTG
Found at i:26323459 original size:30 final size:30
Alignment explanation
Indices: 26323408--26323465 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
26323398 AGAGAAAGAA
* *
26323408 AAATTAAATTAATTAGTAATAATAATAATT
1 AAATTAAATTAATTAGCAATAAAAATAATT
26323438 AAATTAAATTAAATT-GCAATAAAAATAA
1 AAATTAAATT-AATTAGCAATAAAAATAA
26323466 ATGGCTAAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.34
Consensus pattern (30 bp):
AAATTAAATTAATTAGCAATAAAAATAATT
Found at i:26326659 original size:42 final size:40
Alignment explanation
Indices: 26326507--26326660 Score: 141
Period size: 41 Copynumber: 3.7 Consensus size: 40
26326497 TATGAGTTTA
* *
26326507 CGTGTAAGACCATATCTGAGATATGGCATC-ATTATGGGATTT
1 CGTGTAAGACCATATCTGGGATATGGCATCGA-TATGAGA--T
* * * *
26326549 CG-GTAGGACCATGTCTGGGACATGGCATCGATATGAAAAT
1 CGTGTAAGACCATATCTGGGATATGGCATCGATATG-AGAT
* * *
26326589 CGTGTAAGACCATAGCTCGGCTATTGGCATCGATATGAGAT
1 CGTGTAAGACCATATCTGGGATA-TGGCATCGATATGAGAT
*
26326630 CCGATGTAAGACCATATATGGGATATGGCAT
1 -CG-TGTAAGACCATATCTGGGATATGGCAT
26326661 TGGTATGATT
Statistics
Matches: 89, Mismatches: 17, Indels: 12
0.75 0.14 0.10
Matches are distributed among these distances:
40 3 0.03
41 44 0.49
42 25 0.28
43 17 0.19
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (40 bp):
CGTGTAAGACCATATCTGGGATATGGCATCGATATGAGAT
Found at i:26331312 original size:21 final size:21
Alignment explanation
Indices: 26331286--26331329 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
26331276 AACACAAATT
26331286 ACATGGTGCATTATTATTGTG
1 ACATGGTGCATTATTATTGTG
26331307 ACATGGTGCATTATTATTGTG
1 ACATGGTGCATTATTATTGTG
26331328 AC
1 AC
26331330 TAACTTGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.25, C:0.11, G:0.23, T:0.41
Consensus pattern (21 bp):
ACATGGTGCATTATTATTGTG
Found at i:26333340 original size:40 final size:40
Alignment explanation
Indices: 26333259--26333400 Score: 225
Period size: 40 Copynumber: 3.6 Consensus size: 40
26333249 CAACCAAGTA
* ** *
26333259 CCTTCGGGATTTAG-CCGGACATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
26333298 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
26333338 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
26333378 CCTTCGGGACTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
26333401 CATTCGAATA
Statistics
Matches: 97, Mismatches: 4, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
39 14 0.14
40 83 0.86
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:26340269 original size:42 final size:41
Alignment explanation
Indices: 26340215--26340309 Score: 113
Period size: 42 Copynumber: 2.3 Consensus size: 41
26340205 CGAGACAGGA
* *
26340215 CATCGATATGAGAAT-CGTGTAAGACCATAGT-TGGGCTATTGG
1 CATCGATATGAG-ATCCATGTAAGACCATA-TATGGGATA-TGG
26340257 CATCGATATGAGATCCCATGTAAGACCATATATGGGATATGG
1 CATCGATATGAGAT-CCATGTAAGACCATATATGGGATATGG
*
26340299 CATTGATATGA
1 CATCGATATGA
26340310 TTTTATGTGT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
41 2 0.04
42 26 0.55
43 19 0.40
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (41 bp):
CATCGATATGAGATCCATGTAAGACCATATATGGGATATGG
Found at i:26345803 original size:46 final size:49
Alignment explanation
Indices: 26345697--26345818 Score: 142
Period size: 50 Copynumber: 2.5 Consensus size: 49
26345687 TGTCTTCGAC
** * *
26345697 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCGTATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCG-ATATATATATAAT
* * *
26345747 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCC-ATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCGATATATATATAAT
*
26345793 ATGGACTTACATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
26345819 CTGTCCTGTC
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
46 27 0.43
47 1 0.02
48 5 0.08
50 30 0.48
ACGTcount: A:0.27, C:0.22, G:0.16, T:0.35
Consensus pattern (49 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCGATATATATATAAT
Found at i:26347790 original size:30 final size:30
Alignment explanation
Indices: 26347756--26347815 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26347746 CTTTAATACT
*
26347756 AACTTTGGCAAAATTAC-CATTTTGTCCCTA
1 AACTTTGGCAAAATTACAC-TTTTGCCCCTA
* *
26347786 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGCAAAATTACACTTTTGCCCCTA
26347816 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.28, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AACTTTGGCAAAATTACACTTTTGCCCCTA
Found at i:26350005 original size:27 final size:28
Alignment explanation
Indices: 26349947--26350019 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 28
26349937 AAAAGCTAAG
* *
26349947 CAGAGAGCTCACACAAAGTAGAGCCAAT
1 CAGAGAGCTCACACAAAGCAGAACCAAT
**
26349975 -AGAGAGCTCACACAAAGCA-AACTTAT
1 CAGAGAGCTCACACAAAGCAGAACCAAT
* *
26350001 CAGAGAGCTCTCATAAAGC
1 CAGAGAGCTCACACAAAGC
26350020 TGAGCTAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.11
27 34 0.89
ACGTcount: A:0.42, C:0.25, G:0.19, T:0.14
Consensus pattern (28 bp):
CAGAGAGCTCACACAAAGCAGAACCAAT
Found at i:26352493 original size:46 final size:47
Alignment explanation
Indices: 26352390--26352561 Score: 160
Period size: 46 Copynumber: 3.7 Consensus size: 47
26352380 TAATTTGTGT
* * * *
26352390 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAAACGAGT-
1 GCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGAGA-G-GTA
* *
26352438 GCCAATGTAAGA-CATGTCCGGGACAT-GCATCGGCCTCGAGAGGTAA
1 GCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGAGAGGT-A
* * **
26352484 GCCAGTGTAA-AACATGTCTAGGACAT-GCATCGG-CTACGAGACAT-
1 GCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCCT-CGAGAGGTA
*
26352528 GTCAGTGTAAGACCATGTCTGGGACATAGCATCG
1 GCCAGTGTAAGACCATGTCTGGGACATAGCATCG
26352562 ACATGGATAC
Statistics
Matches: 105, Mismatches: 13, Indels: 14
0.80 0.10 0.11
Matches are distributed among these distances:
44 11 0.10
45 18 0.17
46 52 0.50
47 13 0.12
48 11 0.10
ACGTcount: A:0.28, C:0.22, G:0.29, T:0.20
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATAGCATCGGCCTCGAGAGGTA
Found at i:26353931 original size:42 final size:42
Alignment explanation
Indices: 26353814--26353933 Score: 120
Period size: 43 Copynumber: 2.8 Consensus size: 42
26353804 GTCTGAGACA
* *
26353814 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATT
* * *
26353856 TACGTATAAGACCATGTCTGTGACATC-GACATCGTATCT-A-ATT
1 T-CGTGTAAGACCATGTCTGGGACA-CAGGCATCG-AT-TGAGATT
* *
26353899 TCGTGTAAGACCTTGTCTGGGACAGAGGCATCGAT
1 TCGTGTAAGACCATGTCTGGGACACAGGCATCGAT
26353934 ATTGAATTAC
Statistics
Matches: 63, Mismatches: 10, Indels: 11
0.75 0.12 0.13
Matches are distributed among these distances:
41 2 0.03
42 27 0.43
43 29 0.46
44 4 0.06
45 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (42 bp):
TCGTGTAAGACCATGTCTGGGACACAGGCATCGATTGAGATT
Found at i:26361220 original size:43 final size:42
Alignment explanation
Indices: 26361173--26361310 Score: 122
Period size: 43 Copynumber: 3.2 Consensus size: 42
26361163 TGTAAGATCG
*
26361173 TGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCA
1 TGTCTGGGACACAGGCATCGATTGA-ATTTACGTATAAGACCA
* * *
26361216 TGTCTGGGACATC-GGCATCTTATCT-AATTT-CGTGTAAGACCC
1 TGTCTGGGACA-CAGGCATC-GAT-TGAATTTACGTATAAGACCA
* *
26361258 TGTCTGGGACAGAGGCATCGATATTGAA-TTACATATAAGACCA
1 TGTCTGGGACACAGGCATCG--ATTGAATTTACGTATAAGACCA
* *
26361301 CGTCCGGGAC
1 TGTCTGGGAC
26361311 GTCGGCATTG
Statistics
Matches: 76, Mismatches: 11, Indels: 16
0.74 0.11 0.16
Matches are distributed among these distances:
42 30 0.39
43 41 0.54
44 4 0.05
45 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (42 bp):
TGTCTGGGACACAGGCATCGATTGAATTTACGTATAAGACCA
Found at i:26361310 original size:85 final size:85
Alignment explanation
Indices: 26361162--26361318 Score: 210
Period size: 85 Copynumber: 1.8 Consensus size: 85
26361152 CTGAGACATT
* * * * * *
26361162 GTGTAAGATCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGACA
1 GTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCCGGGACA
26361227 TCGGCATCTTATCTAATTTC
66 TCGGCATCTTATCTAATTTC
*
26361247 GTGTAAGACCCTGTCTGGGACAGAGGCATCGATATTGA-A-TTACATATAAGACCACGTCCGGGA
1 GTGTAAGACCCTGTCTGGGACACAGGCATCG--ATTGAGATTTACATATAAGACCACGTCCGGGA
*
26361310 CGTCGGCAT
64 CATCGGCAT
26361319 TGTACTTGTT
Statistics
Matches: 62, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
85 56 0.90
86 1 0.02
87 5 0.08
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (85 bp):
GTGTAAGACCCTGTCTGGGACACAGGCATCGATTGAGATTTACATATAAGACCACGTCCGGGACA
TCGGCATCTTATCTAATTTC
Found at i:26363370 original size:13 final size:13
Alignment explanation
Indices: 26363352--26363377 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26363342 TGGCAGTGTG
26363352 AAAGGACACGGGC
1 AAAGGACACGGGC
26363365 AAAGGACACGGGC
1 AAAGGACACGGGC
26363378 TTGTGTCCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.23, G:0.38, T:0.00
Consensus pattern (13 bp):
AAAGGACACGGGC
Found at i:26380342 original size:42 final size:40
Alignment explanation
Indices: 26380286--26380395 Score: 150
Period size: 42 Copynumber: 2.7 Consensus size: 40
26380276 CTCGATATAT
26380286 TATATATCCGGGTTAAATCTCGCAGGCTCCGTACTGGTAATA
1 TATATATCCGGGTTAAATCTCGCAGGCTCCGTACTGGT-A-A
* * *
26380328 TATATATCTGGGTTAAAT-TCCGCAGGCTTCGTGCTGGTAA
1 TATATATCCGGGTTAAATCT-CGCAGGCTCCGTACTGGTAA
*
26380368 TATATATCCGGGTTAAATCCCGCAGGCT
1 TATATATCCGGGTTAAATCTCGCAGGCT
26380396 TAGTGTAGGT
Statistics
Matches: 61, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
40 26 0.43
41 2 0.03
42 33 0.54
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (40 bp):
TATATATCCGGGTTAAATCTCGCAGGCTCCGTACTGGTAA
Found at i:26380371 original size:40 final size:40
Alignment explanation
Indices: 26380286--26380438 Score: 161
Period size: 40 Copynumber: 3.8 Consensus size: 40
26380276 CTCGATATAT
* *
26380286 TATATATCCGGGTTAAA-TCTCGCAGGCTCCGTACTGGTAATA
1 TATATATCCGGGTTAAATTC-CGCAGGCTTCGTGCTGGT-A-A
*
26380328 TATATATCTGGGTTAAATTCCGCAGGCTTCGTGCTGGTAA
1 TATATATCCGGGTTAAATTCCGCAGGCTTCGTGCTGGTAA
* *
26380368 TATATATCCGGGTTAAATCCCGCAGGCTTAGTG-TAGGT-A
1 TATATATCCGGGTTAAATTCCGCAGGCTTCGTGCT-GGTAA
* *
26380407 -CTATATCCAGGCTTAAAGTTCCGCAGGCTTCG
1 TATATATCC-GGGTTAAA-TTCCGCAGGCTTCG
26380439 AGCTAGTGAC
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
38 7 0.07
39 9 0.09
40 46 0.47
41 1 0.01
42 32 0.33
43 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (40 bp):
TATATATCCGGGTTAAATTCCGCAGGCTTCGTGCTGGTAA
Found at i:26384781 original size:46 final size:47
Alignment explanation
Indices: 26384705--26384799 Score: 165
Period size: 46 Copynumber: 2.0 Consensus size: 47
26384695 AAATTAACGA
* *
26384705 CAACGATTGTTTGAGGTTCAGAAATTGATTGTATGTTCCAAGAAATT
1 CAACGATTGTTTGAGGTTCAAAAATAGATTGTATGTTCCAAGAAATT
26384752 CAAC-ATTGTTTGAGGTTCAAAAATAGATTGTATGTTCCAAGAAATT
1 CAACGATTGTTTGAGGTTCAAAAATAGATTGTATGTTCCAAGAAATT
26384798 CA
1 CA
26384800 GAACTTATTT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 42 0.91
47 4 0.09
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.35
Consensus pattern (47 bp):
CAACGATTGTTTGAGGTTCAAAAATAGATTGTATGTTCCAAGAAATT
Found at i:26388183 original size:42 final size:42
Alignment explanation
Indices: 26388127--26388297 Score: 274
Period size: 42 Copynumber: 4.1 Consensus size: 42
26388117 CTCGATATAT
26388127 TATATATCCGGGTTAAAG-CCCGCAGGC-TCTGTGCTGGTAATA
1 TATATATCCGGGTT-AAGTCCCGCAGGCTTC-GTGCTGGTAATA
26388169 TATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAATA
1 TATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAATA
26388211 TATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAATA
1 TATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAATA
* ** *
26388253 TATATATCCGGGTTAAATCCCGCAGGCTTAATGCTGGTACTA
1 TATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAATA
26388295 TAT
1 TAT
26388298 CCGGGCTTAA
Statistics
Matches: 123, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
41 3 0.02
42 118 0.96
43 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (42 bp):
TATATATCCGGGTTAAGTCCCGCAGGCTTCGTGCTGGTAATA
Found at i:26403020 original size:13 final size:14
Alignment explanation
Indices: 26403002--26403039 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
26402992 ATCCTGTTAC
26403002 TTTTTTTACTTTAT
1 TTTTTTTACTTTAT
*
26403016 TTTTTTT--GTTAT
1 TTTTTTTACTTTAT
26403028 TTTTTTTACTTT
1 TTTTTTTACTTT
26403040 TGTCATATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
12 11 0.55
14 9 0.45
ACGTcount: A:0.11, C:0.05, G:0.03, T:0.82
Consensus pattern (14 bp):
TTTTTTTACTTTAT
Found at i:26411475 original size:46 final size:46
Alignment explanation
Indices: 26411365--26411586 Score: 184
Period size: 46 Copynumber: 4.7 Consensus size: 46
26411355 CGGCCATATT
* *
26411365 ATGAGAGCCAGTGTAAGACCATGTATGGGACATGACAACAGCATTGAG
1 ATGAGAGCCAGTGTAAGA-CATGTATGGGACATG-CATCAGCATCGAG
* * *
26411413 ATGAGAGCTAGTGTAAGACATGTTTGGGACATGCATCAGCCTCGAG
1 ATGAGAGCCAGTGTAAGACATGTATGGGACATGCATCAGCATCGAG
* *
26411459 ATGTA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTAT-GAG
1 ATG-AGAGCCAGTGTAAGACATGTATGGGACATGCATCAGC-ATCGAG
* * * * * *
26411505 AT--GTGTCAGTGTAAGACCATGTCTGGGATATGGCATC-GAAACAGAG
1 ATGAGAGCCAGTGTAAGA-CATGTATGGGACAT-GCATCAGCATC-GAG
* *
26411551 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATG
1 --ATGAGAGCCAGTGTAAGA-CATGTATGGGACATG
26411587 GCGTCGGCCT
Statistics
Matches: 145, Mismatches: 18, Indels: 21
0.79 0.10 0.11
Matches are distributed among these distances:
44 12 0.08
45 14 0.10
46 58 0.40
47 16 0.11
48 19 0.13
49 1 0.01
50 25 0.17
ACGTcount: A:0.31, C:0.16, G:0.30, T:0.23
Consensus pattern (46 bp):
ATGAGAGCCAGTGTAAGACATGTATGGGACATGCATCAGCATCGAG
Found at i:26411557 original size:140 final size:142
Alignment explanation
Indices: 26411328--26411688 Score: 401
Period size: 140 Copynumber: 2.5 Consensus size: 142
26411318 TTTGTGCGCT
* * * *
26411328 AGTGTAAGACATGACTGGGACATGCGTCGGCCATATTATGA-GAGCCAGTGTAAGACCATGTATG
1 AGTGTAAGACATGTCTGGGACATGCATCGG-C-TATGA-GATGAGCCAGTGTAAGACCATGTCTG
* * * ** *
26411392 GGACATGACAAC-AGCATTGAGATGAGAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCAGCC
63 GGACATGGCATCGAACAGAGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCC
**
26411454 TCGAGATGTA-AGCC
128 TCGAGATCAATAGCC
* *
26411468 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGTGTCAGTGTAAGACCATGTCTGGGA
1 AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGAGCCAGTGTAAGACCATGTCTGGGA
* * * *
26411533 TATGGCATCGAAACAGAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTC
66 CATGGCATCG-AACAGAGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTC
** **
26411598 GATTTCAATAGTT
130 GAGATCAATAGCC
*
26411611 AGTGTAAGACCATGTCTGGGACATGGCATCGACTGGATG-GATGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCT--ATGAGATGAGCCAGTGTAAGACCATGTCT
26411675 GGGACATGGCATCG
62 GGGACATGGCATCG
26411689 GTATTACACC
Statistics
Matches: 185, Mismatches: 26, Indels: 14
0.82 0.12 0.06
Matches are distributed among these distances:
137 2 0.01
138 33 0.18
139 1 0.01
140 51 0.28
141 13 0.07
142 13 0.07
143 11 0.06
144 14 0.08
145 8 0.04
146 36 0.19
147 3 0.02
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (142 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCTATGAGATGAGCCAGTGTAAGACCATGTCTGGGA
CATGGCATCGAACAGAGAGATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCG
AGATCAATAGCC
Found at i:26411632 original size:49 final size:48
Alignment explanation
Indices: 26411417--26411689 Score: 196
Period size: 46 Copynumber: 5.8 Consensus size: 48
26411407 ATTGAGATGA
* * * *
26411417 GAGCTAGTGTAAGA-CATGTTTGGGACAT-GCATCAGCCTCGA--GAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGATCAAT
* *
26411461 GTAAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CT--ATGAGAT
1 G--AGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGATCA-AT
* * * * *
26411507 GTG-TCAGTGTAAGACCATGTCTGGGATATGGCATCGAAAC-AGA-GATAT
1 GAGCT-AGTGTAAGACCATGTCTGGGACATGGCATCG-GACTCGATCA-AT
* *
26411555 GAGAGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCAAT
1 --GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGA--TCAAT
* * **
26411607 -AGTTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTGGATGGAT
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGATCAAT
*
26411653 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGG
26411690 TATTACACCC
Statistics
Matches: 184, Mismatches: 24, Indels: 38
0.75 0.10 0.15
Matches are distributed among these distances:
43 1 0.01
44 11 0.06
45 15 0.08
46 43 0.23
47 32 0.17
48 11 0.06
49 34 0.18
50 33 0.18
51 1 0.01
52 2 0.01
53 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (48 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGACTCGATCAAT
Found at i:26411683 original size:96 final size:98
Alignment explanation
Indices: 26411464--26411689 Score: 276
Period size: 96 Copynumber: 2.4 Consensus size: 98
26411454 TCGAGATGTA
*
26411464 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CT--A--TGAGAT-GTGTCAGTGTAAGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCA-ATAGT-T-AGTGTAAGA
* *
26411521 CCATGTCTGGGATATGGCATCGAAACAGAGATATGAG
63 CCATGTCTGGGACATGGCATCG-AACAGAGATAGGAG
* *
26411558 AGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCCTCGATTTCAATAGTTAGTGTAAGACCA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCAATAGTTAGTGTAAGACCA
*
26411623 TGTCTGGGACATGGCATCG-ACTG-GAT-GGATG
66 TGTCTGGGACATGGCATCGAACAGAGATAGGA-G
26411654 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGG
26411690 TATTACACCC
Statistics
Matches: 115, Mismatches: 8, Indels: 16
0.83 0.06 0.12
Matches are distributed among these distances:
94 12 0.10
95 16 0.14
96 44 0.38
97 5 0.04
99 31 0.27
100 3 0.03
101 4 0.03
ACGTcount: A:0.27, C:0.18, G:0.31, T:0.24
Consensus pattern (98 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTCAATAGTTAGTGTAAGACCA
TGTCTGGGACATGGCATCGAACAGAGATAGGAG
Found at i:26414567 original size:9 final size:9
Alignment explanation
Indices: 26414554--26414599 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
26414544 AAATTTTAAA
26414554 AATATTTTT
1 AATATTTTT
*
26414563 TATATTTTT
1 AATATTTTT
*
26414572 AATAATTTT
1 AATATTTTT
26414581 AATAATTTTT
1 AAT-ATTTTT
26414591 --TATTTTT
1 AATATTTTT
26414598 AA
1 AA
26414600 AAACATTTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
7 6 0.20
8 1 0.03
9 18 0.60
10 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (9 bp):
AATATTTTT
Found at i:26414580 original size:18 final size:18
Alignment explanation
Indices: 26414555--26414634 Score: 58
Period size: 18 Copynumber: 4.4 Consensus size: 18
26414545 AATTTTAAAA
*
26414555 ATATTTTTTAT-ATTTTT
1 ATATTTTTAATAATTTTT
*
26414572 AATAATTTTAATAATTTTT
1 -ATATTTTTAATAATTTTT
*
26414591 -TATTTTTAAAAACATTTTT
1 ATATTTTT-AATA-ATTTTT
*
26414610 GTATTTTTTAA-AATTTTT
1 ATA-TTTTTAATAATTTTT
*
26414628 AAATTTT
1 ATATTTT
26414635 AAGAAAATTA
Statistics
Matches: 51, Mismatches: 6, Indels: 11
0.75 0.09 0.16
Matches are distributed among these distances:
17 10 0.20
18 19 0.37
19 13 0.25
20 4 0.08
21 5 0.10
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (18 bp):
ATATTTTTAATAATTTTT
Found at i:26414601 original size:47 final size:45
Alignment explanation
Indices: 26414547--26414634 Score: 124
Period size: 47 Copynumber: 1.9 Consensus size: 45
26414537 ATTTTAAAAA
*
26414547 TTTTAAAAATATTTTT-TATATTTTTAATAATTTTAATAATTTTTTAT
1 TTTTAAAAACATTTTTGTAT-TTTTTAA-AATTTTAA-AATTTTTTAT
*
26414594 TTTTAAAAACATTTTTGTATTTTTTAAAATTTTTAAATTTT
1 TTTTAAAAACATTTTTGTATTTTTTAAAATTTTAAAATTTT
26414635 AAGAAAATTA
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
45 6 0.16
46 7 0.18
47 22 0.58
48 3 0.08
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (45 bp):
TTTTAAAAACATTTTTGTATTTTTTAAAATTTTAAAATTTTTTAT
Found at i:26414617 original size:28 final size:27
Alignment explanation
Indices: 26414538--26414630 Score: 80
Period size: 27 Copynumber: 3.3 Consensus size: 27
26414528 TTTTAATTAA
26414538 TTTTAAAAATTTTAAAAATATTTTTTATAT
1 TTTTAAAAATTTT---AATATTTTTTATAT
*
26414568 TTTTAATAATTTTAATAATTTTTTAT-T
1 TTTTAAAAATTTTAAT-ATTTTTTATAT
* ** *
26414595 TTTAAAAACATTTTTGTATTTTTTAAAAT
1 TTTTAAAA-ATTTTAATATTTTTT-ATAT
26414624 TTTTAAA
1 TTTTAAA
26414631 TTTTAAGAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
27 17 0.33
28 16 0.31
29 7 0.13
30 12 0.23
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (27 bp):
TTTTAAAAATTTTAATATTTTTTATAT
Found at i:26414627 original size:19 final size:17
Alignment explanation
Indices: 26414577--26414627 Score: 57
Period size: 19 Copynumber: 2.8 Consensus size: 17
26414567 TTTTTAATAA
26414577 TTTTAATAATTTTTTATT
1 TTTTAA-AATTTTTTATT
*
26414595 TTTAAAAACATTTTTGTATT
1 TTT-TAAA-ATTTTT-TATT
26414615 TTTTAAAATTTTT
1 TTTTAAAATTTTT
26414628 AAATTTTAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 10 0.36
19 11 0.39
20 7 0.25
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (17 bp):
TTTTAAAATTTTTTATT
Found at i:26417400 original size:39 final size:39
Alignment explanation
Indices: 26417346--26417424 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
26417336 TTCTATAATG
26417346 TAGGTTCCTTTCTGGGATTGTTTTGTATTCCAGAGTTAT
1 TAGGTTCCTTTCTGGGATTGTTTTGTATTCCAGAGTTAT
26417385 TAGGTTCCTTTCTGGGATTGTTTTGTATTCCAGAGTTAT
1 TAGGTTCCTTTCTGGGATTGTTTTGTATTCCAGAGTTAT
26417424 T
1 T
26417425 TCCATTTATT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.15, C:0.13, G:0.23, T:0.49
Consensus pattern (39 bp):
TAGGTTCCTTTCTGGGATTGTTTTGTATTCCAGAGTTAT
Found at i:26421317 original size:20 final size:20
Alignment explanation
Indices: 26421263--26421318 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 20
26421253 TGAAAGAAAA
26421263 GAAATTGAAATAAAAATAAAGT
1 GAAATT-AAA-AAAAATAAAGT
* *
26421285 GTAAA-TAAGAAAAATAAATT
1 G-AAATTAAAAAAAATAAAGT
26421305 GAAATTAAAAAAAA
1 GAAATTAAAAAAAA
26421319 AGAAATGAGG
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 3 0.10
20 19 0.66
21 2 0.07
22 2 0.07
23 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.11, T:0.21
Consensus pattern (20 bp):
GAAATTAAAAAAAATAAAGT
Found at i:26423607 original size:27 final size:26
Alignment explanation
Indices: 26423576--26423663 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 26
26423566 TTGCCAGAAT
*
26423576 AGATAATGTGATAGAGTCACCAGATAC
1 AGATAATGTG-TAGAGCCACCAGATAC
26423603 AGATAATCGTCGTAGAGCCACCAGA-AC
1 AGATAAT-GT-GTAGAGCCACCAGATAC
* *
26423630 AGAAATATGTGGCAGAGCCACCAGAT-C
1 AGATA-ATGT-GTAGAGCCACCAGATAC
26423657 AGATAAT
1 AGATAAT
26423664 TGTGGCATAG
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
26 2 0.04
27 33 0.63
28 16 0.31
29 1 0.02
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.18
Consensus pattern (26 bp):
AGATAATGTGTAGAGCCACCAGATAC
Found at i:26423667 original size:27 final size:27
Alignment explanation
Indices: 26423588--26423680 Score: 107
Period size: 27 Copynumber: 3.4 Consensus size: 27
26423578 ATAATGTGAT
* * * *
26423588 AGAGTCACCAGATACAGATAATCGTCGT
1 AGAGCCACCAGAT-CAGATAATTGTGGC
*
26423616 AGAGCCACCAGAACAGA-AATATGTGGC
1 AGAGCCACCAGATCAGATAAT-TGTGGC
26423643 AGAGCCACCAGATCAGATAATTGTGGC
1 AGAGCCACCAGATCAGATAATTGTGGC
*
26423670 ATAGCCACCAG
1 AGAGCCACCAG
26423681 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
26 3 0.05
27 39 0.70
28 14 0.25
ACGTcount: A:0.37, C:0.24, G:0.24, T:0.16
Consensus pattern (27 bp):
AGAGCCACCAGATCAGATAATTGTGGC
Found at i:26431412 original size:27 final size:26
Alignment explanation
Indices: 26431377--26431488 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
26431367 AGCTTGGCTG
* *
26431377 CCAGAACAGAAAATGTGACAGAGTCA
1 CCAGAACAGAAAATGTGGCAGAGCCA
*
26431403 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGAAAAT-GTGGCAGAGCCA
* * *
26431431 CTAGAATAGAAATATGTGGTAGAGCCA
1 CCAGAACAGAAA-ATGTGGCAGAGCCA
* * *
26431458 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGA-AAATGTGGCAGAGCCA
26431485 CCAG
1 CCAG
26431489 GACGCTTCCT
Statistics
Matches: 69, Mismatches: 13, Indels: 7
0.78 0.15 0.08
Matches are distributed among these distances:
26 5 0.07
27 46 0.67
28 18 0.26
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGAAAATGTGGCAGAGCCA
Found at i:26431471 original size:54 final size:54
Alignment explanation
Indices: 26431379--26431485 Score: 144
Period size: 54 Copynumber: 2.0 Consensus size: 54
26431369 CTTGGCTGCC
*
26431379 AGAACAGAAAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGAGCCACT
1 AGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
* ** * *
26431433 AGAATAGAAATATGTGGTAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCAC
1 AGAACAGAAA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCAC
26431486 CAGGACGCTT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
54 29 0.63
55 17 0.37
ACGTcount: A:0.39, C:0.19, G:0.24, T:0.18
Consensus pattern (54 bp):
AGAACAGAAAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGAGCCACT
Found at i:26435532 original size:22 final size:22
Alignment explanation
Indices: 26435505--26435547 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26435495 ACAGAAGAAG
* *
26435505 AAAAGAATAACAAATGGAGAGA
1 AAAAGAAAAACAAAAGGAGAGA
*
26435527 AAAAGAAAAATAAAAGGAGAG
1 AAAAGAAAAACAAAAGGAGAG
26435548 GAAGAGTGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.23, T:0.07
Consensus pattern (22 bp):
AAAAGAAAAACAAAAGGAGAGA
Found at i:26439588 original size:26 final size:26
Alignment explanation
Indices: 26439553--26439615 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 26
26439543 TTAGCTCTTA
*
26439553 TGAGCATCCCGATTAAA-GGCTCTTCG
1 TGAGCTTCCCG-TTAAATGGCTCTTCG
*
26439579 TGAGCTTCCCGTTAAATTTGGCTCTTTG
1 TGAGCTTCCCGTTAAA--TGGCTCTTCG
26439607 TGAGCTTCC
1 TGAGCTTCC
26439616 TGATAGTGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 5 0.16
26 10 0.31
28 17 0.53
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.35
Consensus pattern (26 bp):
TGAGCTTCCCGTTAAATGGCTCTTCG
Found at i:26440635 original size:163 final size:163
Alignment explanation
Indices: 26440358--26440693 Score: 654
Period size: 163 Copynumber: 2.1 Consensus size: 163
26440348 ATTTTACCAA
*
26440358 TGATAATATGTAAATGGATGTTTGTAATCTAGCTTTTGGAATGACTAATAATGTTATATTTTGGT
1 TGATTATATGTAAATGGATGTTTGTAATCTAGCTTTTGGAATGACTAATAATGTTATATTTTGGT
26440423 TAGATAATATAAAGTTATATCATGTTTAATATATACATGTATAAGGTTTGGTTAAATTGATTTTG
66 TAGATAATATAAAGTTATATCATGTTTAATATATACATGTATAAGGTTTGGTTAAATTGATTTTG
26440488 AGTAAAATATAAATCATCACAAGAAGGTAAGCT
131 AGTAAAATATAAATCATCACAAGAAGGTAAGCT
26440521 TGATTATATGTAAATGGATGTTTGTAATCTAGCTTTTGGAATGACTAATAATGTTATATTTTGGT
1 TGATTATATGTAAATGGATGTTTGTAATCTAGCTTTTGGAATGACTAATAATGTTATATTTTGGT
*
26440586 TAGATAATATAAAGTTATATCATGTTTAATATATACATGTATCAGGTTTGGTTAAATTGATTTTG
66 TAGATAATATAAAGTTATATCATGTTTAATATATACATGTATAAGGTTTGGTTAAATTGATTTTG
26440651 AGTAAAATATAAATCATCACAAGAAGGTAAGCT
131 AGTAAAATATAAATCATCACAAGAAGGTAAGCT
26440684 TGATTATATG
1 TGATTATATG
26440694 AATATGTGAT
Statistics
Matches: 171, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
163 171 1.00
ACGTcount: A:0.37, C:0.06, G:0.17, T:0.40
Consensus pattern (163 bp):
TGATTATATGTAAATGGATGTTTGTAATCTAGCTTTTGGAATGACTAATAATGTTATATTTTGGT
TAGATAATATAAAGTTATATCATGTTTAATATATACATGTATAAGGTTTGGTTAAATTGATTTTG
AGTAAAATATAAATCATCACAAGAAGGTAAGCT
Found at i:26447319 original size:35 final size:35
Alignment explanation
Indices: 26447273--26447346 Score: 121
Period size: 35 Copynumber: 2.1 Consensus size: 35
26447263 TCCGAAGAAG
* *
26447273 AAAGATTCCATTTGGGTAATTGTCGACCGGTTAAC
1 AAAGATGCCATTTGGGTAATTGTCGACCAGTTAAC
*
26447308 AAAGATGCCATTTGGGTAATTGTGGACCAGTTAAC
1 AAAGATGCCATTTGGGTAATTGTCGACCAGTTAAC
26447343 AAAG
1 AAAG
26447347 TCTGTACACT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.28
Consensus pattern (35 bp):
AAAGATGCCATTTGGGTAATTGTCGACCAGTTAAC
Found at i:26449606 original size:26 final size:27
Alignment explanation
Indices: 26449571--26449637 Score: 75
Period size: 28 Copynumber: 2.5 Consensus size: 27
26449561 TTAGCTCTTA
*
26449571 TGAGCATCCCGATTAAA-GGCTCTTCG
1 TGAGCTTCCCGATTAAATGGCTCTTCG
*
26449597 TGAGCTTCCCG-TTAAATTTGGCTCTTTG
1 TGAGCTTCCCGATTAAA--TGGCTCTTCG
*
26449625 TGAGCTTCTCGAT
1 TGAGCTTCCCGAT
26449638 AGTGCTCGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
25 5 0.15
26 10 0.29
28 18 0.53
29 1 0.03
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
TGAGCTTCCCGATTAAATGGCTCTTCG
Found at i:26466111 original size:46 final size:48
Alignment explanation
Indices: 26466044--26466215 Score: 169
Period size: 47 Copynumber: 3.7 Consensus size: 48
26466034 TGTGTGAGCT
* *
26466044 AGTGTAAG-CCATGTCTAGGACAT-GCATCGGCCTTGAGACGTAAGCC
1 AGTGTAAGACCATATCTAGGACATGGCATCGGCCTTGAGATGTAAGCC
* * * * *
26466090 AGTGTAAGA-CATGTCTGGGACAT-GCACCAG-CTATGAGATG-ATAGTC
1 AGTGTAAGACCATATCTAGGACATGGCATCGGCCT-TGAGATGTA-AGCC
* * * *
26466136 AATGTAAGACCATATCTAGGACATGGCATC-GACTTGAGATATGAGCC
1 AGTGTAAGACCATATCTAGGACATGGCATCGGCCTTGAGATGTAAGCC
*
26466183 AGTGTAAGACCATATCTGGGACATGGCATCGGC
1 AGTGTAAGACCATATCTAGGACATGGCATCGGC
26466216 ACCTTACCCA
Statistics
Matches: 103, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
45 3 0.03
46 43 0.42
47 50 0.49
48 7 0.07
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATATCTAGGACATGGCATCGGCCTTGAGATGTAAGCC
Found at i:26470729 original size:12 final size:12
Alignment explanation
Indices: 26470712--26470741 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
26470702 ATGTTTTTGC
26470712 ACACGGGCTAGG
1 ACACGGGCTAGG
26470724 ACACGGGCTAGG
1 ACACGGGCTAGG
26470736 ACACGG
1 ACACGG
26470742 ACATGTCGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.27, C:0.27, G:0.40, T:0.07
Consensus pattern (12 bp):
ACACGGGCTAGG
Found at i:26472145 original size:42 final size:42
Alignment explanation
Indices: 26472031--26472194 Score: 170
Period size: 42 Copynumber: 3.9 Consensus size: 42
26472021 AGCAAGATAC
* * * **
26472031 CAATGCCATATCCCAGATATGGTATTACATGGGATCACATAT
1 CAATGCCATATCCCAGACATGGTCTTACACGAAATCACATAT
* * ** *
26472073 CGATCCCGAT-TCCCTAG-CTATGGTCTTACACGATGTCTCATAT
1 CAATGCC-ATATCCC-AGAC-ATGGTCTTACACGAAATCACATAT
* *
26472116 CGATGCCATGTCCCAGACATGGTCTTACACGAAATCACATAT
1 CAATGCCATATCCCAGACATGGTCTTACACGAAATCACATAT
*
26472158 CAATGCCATATCCCAGATATGGTCTTACACGAAATCA
1 CAATGCCATATCCCAGACATGGTCTTACACGAAATCA
26472195 TACAAAACCC
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
42 68 0.67
43 33 0.33
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (42 bp):
CAATGCCATATCCCAGACATGGTCTTACACGAAATCACATAT
Found at i:26472157 original size:85 final size:84
Alignment explanation
Indices: 26472033--26472189 Score: 208
Period size: 85 Copynumber: 1.9 Consensus size: 84
26472023 CAAGATACCA
* * ** * *
26472033 ATGCCATATCCCAGATATGGTATTACATGGGATCACATATCGATCCCGAT-TCCCTAGCTATGGT
1 ATGCCATATCCCAGACATGGTATTACACGAAATCACATATCAATCCC-ATATCCC-AGATATGGT
26472097 CTTACACGATGTCTCATATCG
64 CTTACACGATGTCTCATATCG
* * *
26472118 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCAATGCCATATCCCAGATATGGTCT
1 ATGCCATATCCCAGACATGGTATTACACGAAATCACATATCAATCCCATATCCCAGATATGGTCT
26472183 TACACGA
66 TACACGA
26472190 AATCATACAA
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
84 19 0.31
85 43 0.69
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (84 bp):
ATGCCATATCCCAGACATGGTATTACACGAAATCACATATCAATCCCATATCCCAGATATGGTCT
TACACGATGTCTCATATCG
Found at i:26477625 original size:40 final size:39
Alignment explanation
Indices: 26477435--26477618 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
26477425 CGAATGATGT
* * * *
26477435 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* * *
26477475 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
26477515 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26477553 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26477594 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26477619 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 33 0.27
40 79 0.65
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26477641 original size:79 final size:79
Alignment explanation
Indices: 26477487--26477651 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
26477477 GGACTAAGAT
* **
26477487 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
26477552 ATCCGAGTTAAGTC
66 ATCCGAGTTAAATC
* * *
26477566 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
26477629 TATATCCG-GTTAAATT
63 TAAATCCGAGTTAAATC
26477645 CCGAAGG
1 CCGAAGG
26477652 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGAGTTAAATC
Found at i:26486718 original size:44 final size:41
Alignment explanation
Indices: 26486582--26486745 Score: 134
Period size: 43 Copynumber: 3.9 Consensus size: 41
26486572 AGCTTGTACA
* ** * *
26486582 ATGCCAACGTCCCAGAC-GAGGTCTTACATGTATTCAAATATCA
1 ATGCCAATGTCCCAGACAG-GGTCTTACATAAAATC-AATA-CG
*
26486625 ATGCCATTGTCCCAGACAGGGTCTTACATAAAATCAATACG
1 ATGCCAATGTCCCAGACAGGGTCTTACATAAAATCAATACG
* * * *
26486666 ATGCCAATGTCCCAGACATGGTTTTACACGTAAATCTCAATTCG
1 ATGCCAATGTCCCAGACAGGGTCTTACA--TAAA-ATCAATACG
* * *
26486710 ATGCCAATGTACCAGAC-GTGTTCTTACACAAAATCA
1 ATGCCAATGTCCCAGACAG-GGTCTTACATAAAATCA
26486746 CATATCGAAA
Statistics
Matches: 99, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
41 29 0.29
42 7 0.07
43 32 0.32
44 31 0.31
ACGTcount: A:0.33, C:0.25, G:0.16, T:0.26
Consensus pattern (41 bp):
ATGCCAATGTCCCAGACAGGGTCTTACATAAAATCAATACG
Found at i:26490520 original size:28 final size:28
Alignment explanation
Indices: 26490484--26490537 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
26490474 TATATATTAC
*
26490484 AAATTCTTTACCCGATTCTAGTTGTATT
1 AAATTCTTTACCCGATACTAGTTGTATT
* *
26490512 AAATTCTTTACCTGATACTGGTTGTA
1 AAATTCTTTACCCGATACTAGTTGTA
26490538 CTAACACAGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (28 bp):
AAATTCTTTACCCGATACTAGTTGTATT
Found at i:26493063 original size:53 final size:54
Alignment explanation
Indices: 26493006--26493411 Score: 422
Period size: 55 Copynumber: 7.6 Consensus size: 54
26492996 AACTTACCAT
* *
26493006 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * * *
26493059 TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAATAACTCATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-AGAACTCATCAA
* *
26493114 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTAT-GAACTCACCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * * * *
26493167 TGCCATGCCTTGGCATGGTCTTACATGGGA-CTTTTGCCTTATAGTAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATC-CTTGCCTTATAG-AACTCATCAA
* * *
26493222 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* * * * **
26493276 TGCCATGCCTTGGCATGATCTTACATGATATCCTTATC-T-T---AC-CA--AA
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
*** * *
26493322 TGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAA
1 TGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
* *
26493377 TGCCATGTCTTGGCATGGTCTTACATGATATCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTT
26493412 ATCTTACCAA
Statistics
Matches: 290, Mismatches: 46, Indels: 33
0.79 0.12 0.09
Matches are distributed among these distances:
46 9 0.03
47 23 0.08
48 2 0.01
49 3 0.01
52 6 0.02
53 81 0.28
54 66 0.23
55 97 0.33
56 3 0.01
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCATCAA
Found at i:26493195 original size:108 final size:108
Alignment explanation
Indices: 26493006--26493403 Score: 528
Period size: 108 Copynumber: 3.8 Consensus size: 108
26492996 AACTTACCAT
*
26493006 TGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT-GAACTCACCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
26493070 GGCATGGTCTTACATGGGACCTTTGCCTTATAATAACTCATCAA
66 GGCATGGTCTTACATGGGA-CTTTGCCTTATAATAACTCATCAA
*
26493114 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTTCCTTAT-GAACTCACCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
* *
26493178 GGCATGGTCTTACATGGGACTTTTGCCTTATAGTAACTTATCAA
66 GGCATGGTCTTACATGGGAC-TTTGCCTTATAATAACTCATCAA
* * * *
26493222 TGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTT
1 TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
* * * *
26493287 GGCATGATCTTACAT--GA-TAT-CCTTAT-CTTAC-CA--AA
66 GGCATGGTCTTACATGGGACTTTGCCTTATAATAACTCATCAA
*** * * * *
26493322 TGCCATGTTCCAAACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGTCT
1 TGCCATG-TCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCT
26493387 TGGCATGGTCTTACATG
65 TGGCATGGTCTTACATG
26493404 ATATCCTTAT
Statistics
Matches: 264, Mismatches: 22, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
100 9 0.03
101 65 0.25
102 1 0.00
103 3 0.01
104 6 0.02
105 2 0.01
107 3 0.01
108 141 0.53
109 34 0.13
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.36
Consensus pattern (108 bp):
TGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATAGAACTCACCAATGCCATGCCTT
GGCATGGTCTTACATGGGACTTTGCCTTATAATAACTCATCAA
Found at i:26493349 original size:47 final size:47
Alignment explanation
Indices: 26493289--26493447 Score: 167
Period size: 47 Copynumber: 3.2 Consensus size: 47
26493279 CATGCCTTGG
*
26493289 CATGATCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
* * * ****
26493336 CATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATG-TCTTGG
1 CATGGTCTTACATGATATCCTTATC-T-T---AC-CA--AATGCCATGTTCCAAA
26493390 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
1 CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
26493437 CATGGTCTTAC
1 CATGGTCTTAC
26493448 CTTATCCTTG
Statistics
Matches: 88, Mismatches: 15, Indels: 18
0.73 0.12 0.15
Matches are distributed among these distances:
46 9 0.10
47 35 0.40
48 2 0.02
49 3 0.03
52 3 0.03
53 2 0.02
54 25 0.28
55 9 0.10
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (47 bp):
CATGGTCTTACATGATATCCTTATCTTACCAAATGCCATGTTCCAAA
Found at i:26493357 original size:101 final size:101
Alignment explanation
Indices: 26493234--26493447 Score: 383
Period size: 101 Copynumber: 2.1 Consensus size: 101
26493224 CCATGTCTTG
*
26493234 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
26493299 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* * * *
26493335 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGTCTTGGCATGGTCTTA
1 ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
26493400 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
66 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
26493436 ACATGGTCTTAC
1 ACATGGTCTTAC
26493448 CTTATCCTTG
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
101 108 1.00
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (101 bp):
ACATGGTCTTACATGATATCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:26493505 original size:93 final size:96
Alignment explanation
Indices: 26493234--26493496 Score: 282
Period size: 101 Copynumber: 2.7 Consensus size: 96
26493224 CCATGTCTTG
* * *** * *
26493234 ACATGGTCTTACATGATTTCCTTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGATCTTA
1 ACATGGTCTTACATG-TATCCTTGTCTTATAG-AC---TCAATGCCACATCTTGACATGGTCTTA
26493299 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
61 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
** *
26493335 ACATGGTCTTACATGGTATCCTTGTCTTATAGAACTTATCAATGCCATGTCTTGGCATGGTCTTA
1 ACATGGTCTTACAT-GTATCCTTGTCTTATAG-AC---TCAATGCCACATCTTGACATGGTCTTA
26493400 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
61 CATGATATCCTTATCTTACCAAATGCCATGTTCCAA
* **
26493436 ACATGGTCTTACCT-TATCCTTGTCTTAGT-G-C-CAATGCCACATCTTGATGTGGTCTTACATG
1 ACATGGTCTTACATGTATCCTTGTCTTA-TAGACTCAATGCCACATCTTGACATGGTCTTACATG
26493497 GAGTCCTTAA
Statistics
Matches: 150, Mismatches: 10, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
93 25 0.17
97 1 0.01
99 14 0.09
100 1 0.01
101 108 0.72
102 1 0.01
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.37
Consensus pattern (96 bp):
ACATGGTCTTACATGTATCCTTGTCTTATAGACTCAATGCCACATCTTGACATGGTCTTACATGA
TATCCTTATCTTACCAAATGCCATGTTCCAA
Found at i:26493668 original size:44 final size:44
Alignment explanation
Indices: 26493599--26493685 Score: 113
Period size: 44 Copynumber: 2.0 Consensus size: 44
26493589 GCATCCTTAA
* *
26493599 CCGTCAATTCCTCCTTAAATGCCATGTTATGAA-CATGGACTTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTA-CAACCATGGACTTTT
* * *
26493643 CCGTCAATTCTTCCTTAATTTCCATGGTACAACCATGGACTTT
1 CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTT
26493686 GAGAGATCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
43 2 0.05
44 35 0.95
ACGTcount: A:0.24, C:0.26, G:0.13, T:0.37
Consensus pattern (44 bp):
CCGTCAATTCCTCCTTAAATGCCATGGTACAACCATGGACTTTT
Found at i:26498019 original size:6 final size:5
Alignment explanation
Indices: 26497990--26498077 Score: 65
Period size: 5 Copynumber: 16.6 Consensus size: 5
26497980 TATGTCTTTC
* *
26497990 AAAAT AAAAT --AAT AAAATT GAAAT GAAAAT AAAAAT CAAAAGA AAAAT
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT -AAAAT -AAAA-T AAAAT
26498038 AAAAAT AAAAT AAAAT AAAAAT AAAACT -AAAT AAAAT AAA
1 -AAAAT AAAAT AAAAT -AAAAT AAAA-T AAAAT AAAAT AAA
26498078 TAGGAGGATT
Statistics
Matches: 68, Mismatches: 6, Indels: 18
0.74 0.07 0.20
Matches are distributed among these distances:
3 3 0.04
4 1 0.01
5 32 0.47
6 32 0.47
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:26498022 original size:17 final size:17
Alignment explanation
Indices: 26498000--26498063 Score: 78
Period size: 16 Copynumber: 3.8 Consensus size: 17
26497990 AAAATAAAAT
* *
26498000 AATAAAATTGAAATGAA
1 AATAAAAATAAAATGAA
26498017 AATAAAAATCAAAA-GAAA
1 AATAAAAAT-AAAATG-AA
26498035 AATAAAAATAAAAT-AA
1 AATAAAAATAAAATGAA
26498051 AATAAAAATAAAA
1 AATAAAAATAAAA
26498064 CTAAATAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 15 0.36
17 13 0.31
18 14 0.33
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.17
Consensus pattern (17 bp):
AATAAAAATAAAATGAA
Found at i:26498041 original size:11 final size:11
Alignment explanation
Indices: 26497990--26498077 Score: 74
Period size: 11 Copynumber: 7.7 Consensus size: 11
26497980 TATGTCTTTC
26497990 AAAATAAAATAAT
1 AAAAT-AAA-AAT
**
26498003 AAAATTGAAAT
1 AAAATAAAAAT
26498014 GAAAATAAAAAT
1 -AAAATAAAAAT
*
26498026 CAAAAGAAAAAT
1 -AAAATAAAAAT
26498038 AAAA-ATAAAAT
1 AAAATA-AAAAT
26498049 AAAATAAAAAT
1 AAAATAAAAAT
26498060 AAAACT--AAAT
1 AAAA-TAAAAAT
26498070 AAAATAAA
1 AAAATAAA
26498078 TAGGAGGATT
Statistics
Matches: 63, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
9 1 0.02
10 9 0.14
11 26 0.41
12 22 0.35
13 5 0.08
ACGTcount: A:0.76, C:0.02, G:0.03, T:0.18
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:26513995 original size:40 final size:40
Alignment explanation
Indices: 26513894--26514110 Score: 280
Period size: 40 Copynumber: 5.5 Consensus size: 40
26513884 CGGATGATAA
* * *
26513894 CCGGGCTAAGTCCCGAAGGCATTTTTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
26513934 CCGGGCTAAG-GCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
26513973 CCGGGCTAAGTCCCGAAGGCATTTGTGCGTGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
26514013 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
26514053 CCGGGCTAAGTCCTGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
* *
26514093 CC-GGCTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
26514111 TACTTGGTTT
Statistics
Matches: 159, Mismatches: 15, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
39 48 0.30
40 111 0.70
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:26514108 original size:119 final size:119
Alignment explanation
Indices: 26513890--26514110 Score: 313
Period size: 119 Copynumber: 1.9 Consensus size: 119
26513880 TATTCGGATG
* * *
26513890 ATAACCGGGCTAAGTCCCGAAGGCATTTTTGCTAGTGACTAATTCCGGGCTAAGGCCGAAGGCAT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGGCCGAAGGCAT
* * *
26513955 TTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGTGTTACT
66 TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGTGTTACT
* *
26514009 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTAAGTCCTGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAAT-ACCGGGCTAAGGCC-GAAGGC
*
26514073 ATTTGAGCAAG-TAGCTATATCC-GGCTAAATTCCGAAGG
64 ATTTGAGCAAGTTA-CTATATCCGGGCTAAATCCCGAAGG
26514111 TACTTGGTTT
Statistics
Matches: 90, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
118 2 0.02
119 65 0.72
120 23 0.26
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (119 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACTAATACCGGGCTAAGGCCGAAGGCAT
TTGAGCAAGTTACTATATCCGGGCTAAATCCCGAAGGCATTTGTGCGTGTTACT
Found at i:26518397 original size:77 final size:78
Alignment explanation
Indices: 26518304--26518458 Score: 294
Period size: 77 Copynumber: 2.0 Consensus size: 78
26518294 TTTTTGACAG
26518304 ATAACCATATAGAATCATAAGAAAGTAGAGATACTGTAATCTCAAATATATCACTATAC-AATCT
1 ATAACCATATAGAATCATAAGAAAGTAGAGATACTGTAATCTCAAATATATCACTATACTAATCT
26518368 TTTTAAGAAAGCA
66 TTTTAAGAAAGCA
*
26518381 ATAACCATATAGAATCATAAGAAAGTAGAGATACTGTAATCTCCAATATATCACTATACTAATCT
1 ATAACCATATAGAATCATAAGAAAGTAGAGATACTGTAATCTCAAATATATCACTATACTAATCT
26518446 TTTTAAGAAAGCA
66 TTTTAAGAAAGCA
26518459 CCCATTTTAG
Statistics
Matches: 76, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
77 58 0.76
78 18 0.24
ACGTcount: A:0.46, C:0.15, G:0.10, T:0.29
Consensus pattern (78 bp):
ATAACCATATAGAATCATAAGAAAGTAGAGATACTGTAATCTCAAATATATCACTATACTAATCT
TTTTAAGAAAGCA
Found at i:26523749 original size:13 final size:13
Alignment explanation
Indices: 26523731--26523765 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
26523721 GAAGTAATTG
26523731 CACACGGGCGTGT
1 CACACGGGCGTGT
*
26523744 CACACGGGCGTTT
1 CACACGGGCGTGT
26523757 CACACGGGC
1 CACACGGGC
26523766 ATATCCGTGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.17, C:0.34, G:0.34, T:0.14
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:26529230 original size:14 final size:15
Alignment explanation
Indices: 26529201--26529234 Score: 61
Period size: 14 Copynumber: 2.3 Consensus size: 15
26529191 TACTTACTTA
26529201 TTATTTTATGTTTTT
1 TTATTTTATGTTTTT
26529216 TTATTTTAT-TTTTT
1 TTATTTTATGTTTTT
26529230 TTATT
1 TTATT
26529235 ATTTAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (15 bp):
TTATTTTATGTTTTT
Found at i:26548995 original size:42 final size:43
Alignment explanation
Indices: 26548890--26548999 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 43
26548880 TCATACAATT
* * * * * *
26548890 CCAACGTCCCAGACGTGGTCTTACGTGTATTCAAATATTGATG
1 CCAATGTCCCAGACATGGTCTTACATGAAATCAAATATCGATG
* *
26548933 CCACTGTCCCAGACAGGGTCTTACATGAAATCAAATA-CGATG
1 CCAATGTCCCAGACATGGTCTTACATGAAATCAAATATCGATG
*
26548975 CCAATGTCCCAGATATGGTCTTACA
1 CCAATGTCCCAGACATGGTCTTACA
26549000 CATAAATCTA
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
42 26 0.46
43 30 0.54
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.26
Consensus pattern (43 bp):
CCAATGTCCCAGACATGGTCTTACATGAAATCAAATATCGATG
Found at i:26556820 original size:40 final size:40
Alignment explanation
Indices: 26556765--26557112 Score: 669
Period size: 40 Copynumber: 8.7 Consensus size: 40
26556755 GAGCATTGGA
26556765 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
26556805 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
26556845 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
26556885 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
26556925 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
26556965 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
26557005 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
26557045 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
26557085 ATATGTCCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
26557113 ATGTGTTTGC
Statistics
Matches: 303, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 303 1.00
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:26560247 original size:47 final size:47
Alignment explanation
Indices: 26560169--26560567 Score: 654
Period size: 47 Copynumber: 8.4 Consensus size: 47
26560159 CCCTTCGGAA
* * * * * *
26560169 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26560216 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26560263 CCTATCACATATATATAAACTTTCACATTCATCAGATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26560312 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26560359 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26560406 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26560453 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26560500 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26560549 CTTATCACATATATACACT
1 CTTATCACATATATACACT
26560568 GTCTTGGCTG
Statistics
Matches: 332, Mismatches: 16, Indels: 8
0.93 0.04 0.02
Matches are distributed among these distances:
47 242 0.73
49 90 0.27
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26560467 original size:143 final size:141
Alignment explanation
Indices: 26560169--26560567 Score: 654
Period size: 143 Copynumber: 2.8 Consensus size: 141
26560159 CCCTTCGGAA
* * * * * * * *
26560169 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
* * *
26560234 TTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATAAACTTTCACATTCATCAGA
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
26560299 TCGGCCATTAGGC
129 TCGGCCATTAGGC
26560312 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
26560377 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
26560442 GGCCATTAGGC
131 GGCCATTAGGC
*
26560453 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
26560518 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT
26560568 GTCTTGGCTG
Statistics
Matches: 242, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
141 91 0.38
143 151 0.62
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:26563296 original size:14 final size:14
Alignment explanation
Indices: 26563274--26563308 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
26563264 ATTTCTCAGA
*
26563274 TTGGCTTGCACAAC
1 TTGGGTTGCACAAC
26563288 TTGGGTTGCACAAC
1 TTGGGTTGCACAAC
26563302 TTGGGTT
1 TTGGGTT
26563309 CCATCAAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.17, C:0.20, G:0.29, T:0.34
Consensus pattern (14 bp):
TTGGGTTGCACAAC
Found at i:26567982 original size:22 final size:22
Alignment explanation
Indices: 26567931--26567989 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
26567921 GTAAATACGT
26567931 TTGGCACAAAGCCATAGTTAAG
1 TTGGCACAAAGCCATAGTTAAG
* * * *
26567953 ATGTCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTTAAG
*
26567975 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
26567990 GATCAGATCA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTTAAG
Found at i:26568497 original size:27 final size:27
Alignment explanation
Indices: 26568451--26568526 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
26568441 GGCAAAACAA
* * * *
26568451 TCATTTTACCCTATAGGGGTATGCCGG
1 TCATTTTACACTACAAGGGTATGCCAG
**
26568478 TCATTTTACACTACAAGGGTATTTCAG
1 TCATTTTACACTACAAGGGTATGCCAG
* *
26568505 TAATTTTACACTACGAGGGTAT
1 TCATTTTACACTACAAGGGTAT
26568527 TTCGATAATT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (27 bp):
TCATTTTACACTACAAGGGTATGCCAG
Found at i:26568527 original size:27 final size:27
Alignment explanation
Indices: 26568480--26568619 Score: 99
Period size: 27 Copynumber: 5.2 Consensus size: 27
26568470 TATGCCGGTC
26568480 ATTTTACACTACAAGGGTATTTC-AGTA
1 ATTTTACACTACAAGGGTATTTCGA-TA
*
26568507 ATTTTACACTACGAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCGATA
** ** *
26568534 ATTTTA-AAAATCGGGGGTATTTTGATA
1 ATTTTACACTA-CAAGGGTATTTCGATA
* ** * *
26568561 ATTTTACA-AATTGAGAGTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTCGATA
* *
26568588 ATTTTACA-AATCAAGGGTATTTCGATC
1 ATTTTACACTA-CAAGGGTATTTCGATA
26568615 ATTTT
1 ATTTT
26568620 GCTAATCGAG
Statistics
Matches: 95, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
26 2 0.02
27 91 0.96
28 2 0.02
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCGATA
Found at i:26568552 original size:54 final size:55
Alignment explanation
Indices: 26568491--26568671 Score: 167
Period size: 54 Copynumber: 3.4 Consensus size: 55
26568481 TTTTACACTA
* *
26568491 CAAGGGTATTTCAG-TAATTTTAC-ACTACGAGGGTATTTCGATAATTTTAAAAAT
1 CAAGGGTATTTCAGATAATTTTACAAAT-CGAGAGTATTTCGATAATTTTAAAAAT
** * * * *
26568545 CGGGGGTATTT-TGATAATTTTACAAATTGAGAGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCAGATAATTTTACAAATCGAGAGTATTTCGATAATTTTAAAAAT
* * * * * **
26568599 CAAGGGTATTTC-GATCATTTTGCTAATCGAGAGTATTTTGGTAATTTTGTAAA-
1 CAAGGGTATTTCAGATAATTTTACAAATCGAGAGTATTTCGATAATTTTAAAAAT
26568652 CGAAGGGTATTTCAG-TAATT
1 C-AAGGGTATTTCAGATAATT
26568672 CTACCCTACA
Statistics
Matches: 104, Mismatches: 18, Indels: 10
0.79 0.14 0.08
Matches are distributed among these distances:
53 2 0.02
54 99 0.95
55 3 0.03
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (55 bp):
CAAGGGTATTTCAGATAATTTTACAAATCGAGAGTATTTCGATAATTTTAAAAAT
Found at i:26568626 original size:27 final size:27
Alignment explanation
Indices: 26568491--26568671 Score: 96
Period size: 27 Copynumber: 6.7 Consensus size: 27
26568481 TTTTACACTA
* * *
26568491 CAAGGGTATTTCAGTAATTTTAC-ACT
1 CAAGGGTATTTCGGTAATTTTGCTAAT
* * ***
26568517 ACGAGGGTATTTCGATAATTTTAAAAAT
1 -CAAGGGTATTTCGGTAATTTTGCTAAT
** * * * *
26568545 CGGGGGTATTTTGATAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTGCTAAT
** * * *
26568572 TGAGAGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTCGGTAATTTTGCTAAT
* *
26568599 CAAGGGTATTTCGATCATTTTGCTAAT
1 CAAGGGTATTTCGGTAATTTTGCTAAT
* * * *
26568626 CGAGAGTATTTTGGTAATTTTG-TAAA
1 CAAGGGTATTTCGGTAATTTTGCTAAT
*
26568652 CGAAGGGTATTTCAGTAATT
1 C-AAGGGTATTTCGGTAATT
26568672 CTACCCTACA
Statistics
Matches: 122, Mismatches: 30, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
26 4 0.03
27 116 0.95
28 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
CAAGGGTATTTCGGTAATTTTGCTAAT
Found at i:26568662 original size:81 final size:82
Alignment explanation
Indices: 26568492--26568671 Score: 204
Period size: 81 Copynumber: 2.2 Consensus size: 82
26568482 TTTACACTAC
* * * *
26568492 AAGGGTATTTCAGTAATTTTACACTACGAGGGTATTTCGATAATTTTAAAAATCGGGGGTATTTT
1 AAGGGTATTTCAGTAATTTTACAATACAAGGGTATTTCGATAATTTTAAAAATCGAGAGTATTTT
*
26568557 GATAATTTTACAAATTG
66 GATAATTTTACAAATCG
* * * ***
26568574 -AGAGTATTTCGGTAATTTTACAA-ATCAAGGGTATTTCGATCATTTTGCTAATCGAGAGTATTT
1 AAGGGTATTTCAGTAATTTTACAATA-CAAGGGTATTTCGATAATTTTAAAAATCGAGAGTATTT
* **
26568637 TGGTAATTTTGTAAA-CG
65 TGATAATTTTACAAATCG
26568654 AAGGGTATTTCAGTAATT
1 AAGGGTATTTCAGTAATT
26568672 CTACCCTACA
Statistics
Matches: 80, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
80 2 0.03
81 78 0.98
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.39
Consensus pattern (82 bp):
AAGGGTATTTCAGTAATTTTACAATACAAGGGTATTTCGATAATTTTAAAAATCGAGAGTATTTT
GATAATTTTACAAATCG
Found at i:26568705 original size:26 final size:26
Alignment explanation
Indices: 26568655--26568708 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
26568645 TTGTAAACGA
* * *
26568655 AGGGTATTTCAGTAATTCTACCCTAC
1 AGGGCATTTCAGTAATACAACCCTAC
*
26568681 AGGGCATTTCAGTAATACAAGCCTAC
1 AGGGCATTTCAGTAATACAACCCTAC
26568707 AG
1 AG
26568709 ATATGAGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (26 bp):
AGGGCATTTCAGTAATACAACCCTAC
Found at i:26572451 original size:79 final size:81
Alignment explanation
Indices: 26572315--26572499 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
26572305 TTGAATGATG
* *
26572315 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
26572379 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26572394 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26572456 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
26572474 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26572500 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:26572513 original size:40 final size:40
Alignment explanation
Indices: 26572316--26572499 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
26572306 TGAATGATGT
* * * *
26572316 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26572356 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26572396 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
26572434 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26572475 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26572500 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26572521 original size:79 final size:79
Alignment explanation
Indices: 26572316--26572532 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
26572306 TGAATGATGT
** * * * ** *
26572316 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCAAT
*
26572379 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
26572396 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
*
26572461 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
26572475 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
26572533 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.61
80 42 0.37
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:26580837 original size:27 final size:27
Alignment explanation
Indices: 26580806--26580983 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26580796 TAAATTGTAC
26580806 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26580833 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26580859 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26580887 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26580915 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26580942 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26580969 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26580984 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26580920 original size:82 final size:81
Alignment explanation
Indices: 26580807--26580962 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26580797 AAATTGTACA
* *
26580807 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26580871 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26580888 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26580953 TGCGAGTTGA
65 TGCGAATTGA
26580963 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26580974 original size:82 final size:81
Alignment explanation
Indices: 26580803--26580983 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26580793 GATTAAATTG
* *
26580803 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26580868 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26580884 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26580948 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26580966 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26580984 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26589024 original size:40 final size:40
Alignment explanation
Indices: 26588748--26589010 Score: 351
Period size: 40 Copynumber: 6.7 Consensus size: 40
26588738 TTGAATGATG
* *
26588748 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
26588787 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
26588827 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26588866 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26588905 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
26588945 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
26588986 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26589011 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 11, Indels: 13
0.90 0.05 0.06
Matches are distributed among these distances:
39 92 0.45
40 104 0.50
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26589028 original size:80 final size:77
Alignment explanation
Indices: 26588749--26589043 Score: 296
Period size: 79 Copynumber: 3.7 Consensus size: 77
26588739 TGAATGATGT
* * **
26588749 CCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAG-GACTA-ATCCGGGTTAAG-TCCCGAAGGCATT
* *
26588811 TGTGCGAGATACTAATT
62 TGTGCGAGTTACTAA-A
* *
26588828 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACTAA-TCCGGGTTAAGTCCCGAAGGCATTTG
26588891 TGCGAGTTACTAAA
64 TGCGAGTTACTAAA
* *
26588905 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-GACT-AATCCGGGTTAAGTCCCGAAGGCATTT
26588970 GTGCGAGTTACTATAA
63 GTGCGAGTTACTA-AA
* ** * *
26588986 CCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGA-CTA-ATCCGGGTTAAGTCCCGAAGG
26589044 TACGTGATTT
Statistics
Matches: 188, Mismatches: 17, Indels: 22
0.83 0.07 0.10
Matches are distributed among these distances:
78 44 0.23
79 75 0.40
80 67 0.36
81 2 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (77 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGGACTAATCCGGGTTAAGTCCCGAAGGCATTTGTG
CGAGTTACTAAA
Found at i:26595618 original size:40 final size:40
Alignment explanation
Indices: 26595588--26596520 Score: 1798
Period size: 40 Copynumber: 23.3 Consensus size: 40
26595578 GGACTAAGAT
26595588 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595628 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595668 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595708 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595748 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595788 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595828 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595868 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595908 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595948 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26595988 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596028 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596068 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596108 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596148 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596188 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596228 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596268 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596308 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596348 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
26596388 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
*
26596428 CCGAAGGCATTTGTGCGAGTT-TTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACT-AAATCCGGGTTAAGTC
* *
26596468 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGTTAAGTC
*
26596508 TCGAAGGCATTTG
1 CCGAAGGCATTTG
26596521 AACGAGGAGC
Statistics
Matches: 885, Mismatches: 5, Indels: 6
0.99 0.01 0.01
Matches are distributed among these distances:
39 1 0.00
40 881 1.00
41 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.28
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:26603540 original size:28 final size:29
Alignment explanation
Indices: 26603500--26603614 Score: 144
Period size: 29 Copynumber: 4.0 Consensus size: 29
26603490 GTGAGCATGA
* *
26603500 ATATGAATGTGA-TTGGGCCTAACGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
26603528 ATATAAATGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* *
26603557 ATATACAGGTGATTTGGGCCTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
* * * *
26603586 CTATGAATATGA-TTGGGCTTAATGGGCC
1 ATATAAATGTGATTTGGGCCTAATGGGCC
26603614 A
1 A
26603615 GATACAGGTA
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
28 26 0.35
29 49 0.65
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (29 bp):
ATATAAATGTGATTTGGGCCTAATGGGCC
Found at i:26603610 original size:57 final size:57
Alignment explanation
Indices: 26603508--26603623 Score: 162
Period size: 57 Copynumber: 2.0 Consensus size: 57
26603498 GAATATGAAT
* *
26603508 GTGATTGGGCCTAACGGGCCATATAAATGTGATTTGGGCCTAATGGGCCATATACAG
1 GTGATTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
* * * *
26603565 GTGATTTGGGCCTAATGGGCCCTATGAATATGA-TTGGGCTTAATGGGCCAGATACAG
1 GTGA-TTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
26603622 GT
1 GT
26603624 ATGTGAATTT
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
57 28 0.54
58 24 0.46
ACGTcount: A:0.25, C:0.16, G:0.31, T:0.28
Consensus pattern (57 bp):
GTGATTGGGCCTAACGGGCCATATAAATATGATTTGGGCCTAATGGGCCAGATACAG
Found at i:26616342 original size:49 final size:49
Alignment explanation
Indices: 26616270--26616444 Score: 215
Period size: 49 Copynumber: 3.5 Consensus size: 49
26616260 TGAGGTCACG
* * *
26616270 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATAATTGGTCGCA
* * * * * * * * *
26616319 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCTGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATAA-T-TGGTCGCA
*
26616370 TGTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATTATTGGTCGCA
1 TGTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATAATTGGTCGCA
26616419 TGTGTAGTACTAAGTACAAGCTACTA
1 TGTGTAGTACTAAGTACAAGCTACTA
26616445 TGCATACCAG
Statistics
Matches: 107, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 67 0.63
50 2 0.02
51 38 0.36
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATAATTGGTCGCA
Found at i:26616442 original size:100 final size:100
Alignment explanation
Indices: 26616265--26616452 Score: 313
Period size: 100 Copynumber: 1.9 Consensus size: 100
26616255 TATTGTGAGG
* * *
26616265 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
* * *
26616330 AAGTGCAGGCTACTATGCGTACCTGAAAACTGTGA
66 AAGTACAAGCTACTATGCATACCTGAAAACTGTGA
*
26616365 TCACGTGTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATTATTGGTCGCATGTGTAGTACT
1 TCACGTGTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
26616430 AAGTACAAGCTACTATGCATACC
66 AAGTACAAGCTACTATGCATACC
26616453 AGATAGCTTC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
100 81 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (100 bp):
TCACGTGTGTAGTACTAAGTACAAGCTACTACGTGTACCAGATAATTGGTCGCATGTGTAGTACT
AAGTACAAGCTACTATGCATACCTGAAAACTGTGA
Found at i:26619195 original size:39 final size:40
Alignment explanation
Indices: 26619152--26619319 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
26619142 CTCGTTCAAG
* * * *
26619152 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
26619191 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
26619231 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
26619271 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
26619311 TGCCTTCGG
1 TGCCTTCGG
26619320 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:26619303 original size:80 final size:80
Alignment explanation
Indices: 26619187--26619372 Score: 229
Period size: 80 Copynumber: 2.3 Consensus size: 80
26619177 AGTAACTCAT
* * *
26619187 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
26619251 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
26619266 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
26619330 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
26619347 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
26619373 CAGCATTCAA
Statistics
Matches: 94, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 72 0.77
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:26619332 original size:40 final size:40
Alignment explanation
Indices: 26619189--26619372 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
26619179 TAACTCATAC
* *
26619189 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
26619229 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
26619269 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
26619309 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
26619350 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
26619373 CAGCATTCAA
Statistics
Matches: 124, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 8 0.06
40 105 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:26626701 original size:72 final size:71
Alignment explanation
Indices: 26626571--26626711 Score: 185
Period size: 72 Copynumber: 2.0 Consensus size: 71
26626561 AACAATTGAA
* * *
26626571 GCCAGTAAAACAAAAAGAAATGCCAAGGCCAGGGGAAGAGAAGCAAAATTTGGCGGCAAGGGGAG
1 GCCAGGAAAACAAAAAGAAATGCCAAGGCCAGGGGAAAAGAAGCAAAATTCGGCGGCAAGGGGA-
26626636 GAATTAT
65 GAATTAT
** * * *
26626643 GCCAGGAAAACAAAAAGAAATGCCAAGG-GTGCGGGAAAAGAAGCAGAATTCGGTGGCAATGGGA
1 GCCAGGAAAACAAAAAGAAATGCCAAGGCCAG-GGGAAAAGAAGCAAAATTCGGCGGCAAGGGGA
26626707 GAATT
65 GAATT
26626712 GAGGAAGGAA
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
71 6 0.10
72 54 0.90
ACGTcount: A:0.43, C:0.13, G:0.33, T:0.11
Consensus pattern (71 bp):
GCCAGGAAAACAAAAAGAAATGCCAAGGCCAGGGGAAAAGAAGCAAAATTCGGCGGCAAGGGGAG
AATTAT
Found at i:26630850 original size:29 final size:28
Alignment explanation
Indices: 26630794--26630883 Score: 99
Period size: 29 Copynumber: 3.1 Consensus size: 28
26630784 GTGAGCATGA
**
26630794 ATATAAGGTGATTTGGGCCTAACGGGCC
1 ATATAAGGTGATTTGGGCCTAATAGGCC
26630822 ATATAAAGGTGATTTGGGCCTAATAGGCC
1 ATAT-AAGGTGATTTGGGCCTAATAGGCC
* ** * *
26630851 CTATGAATATGAATTGGGCCTAATAGGCG
1 ATAT-AAGGTGATTTGGGCCTAATAGGCC
26630880 ATAT
1 ATAT
26630884 GAATGTGAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
28 4 0.08
29 48 0.92
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAGGTGATTTGGGCCTAATAGGCC
Found at i:26630884 original size:29 final size:29
Alignment explanation
Indices: 26630806--26630900 Score: 100
Period size: 29 Copynumber: 3.3 Consensus size: 29
26630796 ATAAGGTGAT
** * ** *
26630806 TTGGGCCTAACGGGCCATATAAAGGTGAT
1 TTGGGCCTAATAGGCCATATGAATATGAA
*
26630835 TTGGGCCTAATAGGCCCTATGAATATGAA
1 TTGGGCCTAATAGGCCATATGAATATGAA
* *
26630864 TTGGGCCTAATAGGCGATATGAATGTGAA
1 TTGGGCCTAATAGGCCATATGAATATGAA
*
26630893 TTGAGCCT
1 TTGGGCCT
26630901 GATGGGAAAT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.27
Consensus pattern (29 bp):
TTGGGCCTAATAGGCCATATGAATATGAA
Found at i:26630912 original size:29 final size:29
Alignment explanation
Indices: 26630852--26630917 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 29
26630842 TAATAGGCCC
* * **
26630852 TATGAATATGAATTGGGCCTAATAGGCGA
1 TATGAATGTGAATTGAGCCTAATAGGAAA
* *
26630881 TATGAATGTGAATTGAGCCTGATGGGAAA
1 TATGAATGTGAATTGAGCCTAATAGGAAA
26630910 TATGAATG
1 TATGAATG
26630918 AGATGGGGCA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.35, C:0.08, G:0.29, T:0.29
Consensus pattern (29 bp):
TATGAATGTGAATTGAGCCTAATAGGAAA
Found at i:26642701 original size:21 final size:21
Alignment explanation
Indices: 26642675--26642718 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
26642665 CCAATACGTC
26642675 CCTTTCATCTCGAGTATTCCT
1 CCTTTCATCTCGAGTATTCCT
26642696 CCTTTCATCTCGAGTATTCCT
1 CCTTTCATCTCGAGTATTCCT
26642717 CC
1 CC
26642719 ATTTGAGTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.36, G:0.09, T:0.41
Consensus pattern (21 bp):
CCTTTCATCTCGAGTATTCCT
Found at i:26642891 original size:46 final size:46
Alignment explanation
Indices: 26642824--26642998 Score: 212
Period size: 46 Copynumber: 3.8 Consensus size: 46
26642814 TGTAACCCGC
* *
26642824 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGTAT
* *
26642870 CCATAAGTGAACTCGGACTCAACTCAATGAGTTC-GG-ATTCCTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGTA--T
* * * * *
26642916 ACATTTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCA--TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGTAT
26642963 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG
26642999 ATCCTCAACC
Statistics
Matches: 108, Mismatches: 14, Indels: 14
0.79 0.10 0.10
Matches are distributed among these distances:
44 5 0.05
45 4 0.04
46 63 0.58
47 28 0.26
48 3 0.03
49 5 0.05
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCATTCGTAT
Found at i:26642944 original size:93 final size:93
Alignment explanation
Indices: 26642832--26643000 Score: 293
Period size: 93 Copynumber: 1.8 Consensus size: 93
26642822 GCCCATAAGT
* * *
26642832 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGTATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
26642897 TGAGTTCGGATTCCTAGTTACATTTCAC
66 CGAGTTCGGATTCCTAGTTACATTTCAC
*
26642925 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
26642990 CGAGTTCGGAT
66 CGAGTTCGGAT
26643001 CCTCAACCAT
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATTCCTAGTTACATTTCAC
Found at i:26643018 original size:46 final size:46
Alignment explanation
Indices: 26642827--26643018 Score: 148
Period size: 46 Copynumber: 4.2 Consensus size: 46
26642817 AACCCGCCCA
* * * **
26642827 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG-GCGTTC-GTATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATC-CTCAACATCC
* *
26642872 ATAAGTGAACTCGGACTCAACTCAATGAGTTCGGATTCCT-AGTTACAT-T
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-TCCTCA---ACATCC
* * * *
26642921 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGA-CATTC-GCATCC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATC-CTCAACATCC
26642965 ATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCCTCAACCATCC
1 -TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCCTCAA-CATCC
26643013 T-AGTGA
1 TAAGTGA
26643019 CATGTCACTT
Statistics
Matches: 115, Mismatches: 17, Indels: 28
0.72 0.11 0.17
Matches are distributed among these distances:
43 3 0.03
45 3 0.03
46 68 0.59
47 31 0.27
48 8 0.07
50 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATCCTCAACATCC
Found at i:26645794 original size:15 final size:15
Alignment explanation
Indices: 26645774--26645802 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26645764 TTCAAGACCA
26645774 AAAATTTGACGTAAG
1 AAAATTTGACGTAAG
26645789 AAAATTTGACGTAA
1 AAAATTTGACGTAA
26645803 CATCCCGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.17, T:0.28
Consensus pattern (15 bp):
AAAATTTGACGTAAG
Found at i:26657028 original size:3 final size:3
Alignment explanation
Indices: 26657020--26657072 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
26657010 AATTTGGATG
*
26657020 TTA TTA TTA TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26657068 TTA TT
1 TTA TT
26657073 TCGTATGTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:26657195 original size:30 final size:30
Alignment explanation
Indices: 26657159--26657218 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
26657149 CTTTAGCAAA
26657159 ATTCTTAAATTTTGCCTCTTAAGAGAATCT
1 ATTCTTAAATTTTGCCTCTTAAGAGAATCT
*
26657189 ATTCTTAAATTTTGCCTCTTAAGGGAATCT
1 ATTCTTAAATTTTGCCTCTTAAGAGAATCT
26657219 GGGCAGTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (30 bp):
ATTCTTAAATTTTGCCTCTTAAGAGAATCT
Found at i:26659113 original size:27 final size:27
Alignment explanation
Indices: 26659083--26659144 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
26659073 AATTTATAAA
* *
26659083 ATACCCCTAAGTATG-AAGATTACCATT
1 ATACCCCTAAG-ATGCAAAATGACCATT
*
26659110 ATACCCCT-AGGTGCAAAATGACCATT
1 ATACCCCTAAGATGCAAAATGACCATT
26659136 ATACCCCTA
1 ATACCCCTA
26659145 GGGTTAATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
25 2 0.07
26 20 0.67
27 8 0.27
ACGTcount: A:0.35, C:0.27, G:0.11, T:0.26
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATGACCATT
Found at i:26659287 original size:28 final size:27
Alignment explanation
Indices: 26659249--26659358 Score: 107
Period size: 27 Copynumber: 4.0 Consensus size: 27
26659239 GAAGGAAGCG
*
26659249 TTTTGGTGGCTATGCCACAAATATTTGT
1 TTTTGGTGGCTATGCCAC-AATATCTGT
26659277 TTTTGGTGGCTATGCCACGAATATCTG-
1 TTTTGGTGGCTATGCCAC-AATATCTGT
* *
26659304 TTCTAGTGGCTCA-GCCACAATATCTGT
1 TTTTGGTGGCT-ATGCCACAATATCTGT
* * * **
26659331 ATTTGGTGACTCTATCACAATATCTGT
1 TTTTGGTGGCTATGCCACAATATCTGT
26659358 T
1 T
26659359 CTGGCAGTTA
Statistics
Matches: 67, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
26 8 0.12
27 33 0.49
28 26 0.39
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (27 bp):
TTTTGGTGGCTATGCCACAATATCTGT
Found at i:26659754 original size:28 final size:28
Alignment explanation
Indices: 26659714--26659768 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
26659704 AGGATTCAGA
*
26659714 GTGGCCACATGGACAGCACAGATGGTTG
1 GTGGCCACATGGACAACACAGATGGTTG
** *
26659742 GTGGCCATGTGGACAACGCAGATGGTT
1 GTGGCCACATGGACAACACAGATGGTT
26659769 TATAATTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.36, T:0.20
Consensus pattern (28 bp):
GTGGCCACATGGACAACACAGATGGTTG
Found at i:26663397 original size:27 final size:27
Alignment explanation
Indices: 26663367--26663430 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
26663357 ATTTACTAAA
* *
26663367 ATACCCCTAAGTATG-AAGATTACCATT
1 ATACCCCTAAG-ATGCAAAATGACCATT
*
26663394 ATACCCCT-AGGTGCAAAATGACCATT
1 ATACCCCTAAGATGCAAAATGACCATT
26663420 ATACCCCTAAG
1 ATACCCCTAAG
26663431 GTTAATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
25 2 0.06
26 20 0.62
27 10 0.31
ACGTcount: A:0.36, C:0.27, G:0.12, T:0.25
Consensus pattern (27 bp):
ATACCCCTAAGATGCAAAATGACCATT
Found at i:26663573 original size:28 final size:28
Alignment explanation
Indices: 26663533--26663589 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
26663523 GGAGGAAGCG
26663533 TTCTGGTGGCTATGCCACGAATATCTGT
1 TTCTGGTGGCTATGCCACGAATATCTGT
26663561 TTCTGGTGGCTATGCCACGAATATCTGT
1 TTCTGGTGGCTATGCCACGAATATCTGT
26663589 T
1 T
26663590 CTAATGGCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.18, C:0.21, G:0.25, T:0.37
Consensus pattern (28 bp):
TTCTGGTGGCTATGCCACGAATATCTGT
Found at i:26663603 original size:27 final size:28
Alignment explanation
Indices: 26663539--26663612 Score: 98
Period size: 28 Copynumber: 2.7 Consensus size: 28
26663529 AGCGTTCTGG
**
26663539 TGGCTATGCCACGAATATCTGTTTCTGG
1 TGGCTATGCCACGAATATCTGTTTCTAA
26663567 TGGCTATGCCACGAATATCTG-TTCTAA
1 TGGCTATGCCACGAATATCTGTTTCTAA
* *
26663594 TGGCTCTGCCA-TAATATCT
1 TGGCTATGCCACGAATATCT
26663613 ATATCTTGTG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 7 0.17
27 14 0.33
28 21 0.50
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (28 bp):
TGGCTATGCCACGAATATCTGTTTCTAA
Found at i:26668628 original size:48 final size:48
Alignment explanation
Indices: 26668576--26668713 Score: 179
Period size: 48 Copynumber: 2.9 Consensus size: 48
26668566 TACGAAGTCT
26668576 CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACA
1 CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACA
* * * * * *
26668624 CATATTA-TCGCCAATGCCATGTCCCAGACATGGTCTTACATTGGCTCT
1 CATATCAGT-GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACA
* *
26668672 CATCTCGGATGCCGATGCCATGTCCCAGACATGGTCTTACAC
1 CATATCAG-TGCCGATGCCATGTCCCAGACATGGTCTTACAC
26668714 GGGATCTCAT
Statistics
Matches: 76, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
47 1 0.01
48 44 0.58
49 30 0.39
50 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (48 bp):
CATATCAGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACA
Found at i:26668722 original size:49 final size:47
Alignment explanation
Indices: 26668544--26668723 Score: 168
Period size: 48 Copynumber: 3.7 Consensus size: 47
26668534 CATGTTGGCA
* * * *
26668544 CCATATCCCAGATATGGTCTTATACGAAGTCTCATATC-AGTGCCGATG
1 CCATGTCCCAGACATGGTCTTACACGGA-TCTCATATCGA-TGCCGATG
* * * *
26668592 CCATGTCCCAGACATGGTCTTACACTAGCA-CACATAT-TATCGCCAATG
1 CCATGTCCCAGACATGGTCTTACAC--GGATCTCATATCGAT-GCCGATG
* * *
26668640 CCATGTCCCAGACATGGTCTTACATTGGCTCTCATCTCGGATGCCGATG
1 CCATGTCCCAGACATGGTCTTACA-CGGATCTCATATC-GATGCCGATG
26668689 CCATGTCCCAGACATGGTCTTACACGGGATCTCAT
1 CCATGTCCCAGACATGGTCTTACAC-GGATCTCAT
26668724 TAACCATGGT
Statistics
Matches: 108, Mismatches: 15, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
47 2 0.02
48 64 0.59
49 38 0.35
50 4 0.04
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
CCATGTCCCAGACATGGTCTTACACGGATCTCATATCGATGCCGATG
Found at i:26668903 original size:17 final size:17
Alignment explanation
Indices: 26668881--26668914 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26668871 TAATCATGAT
*
26668881 AATCACATTTTAACACA
1 AATCACAATTTAACACA
*
26668898 AATCACAATTTATCACA
1 AATCACAATTTAACACA
26668915 TTGTCATTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.47, C:0.24, G:0.00, T:0.29
Consensus pattern (17 bp):
AATCACAATTTAACACA
Found at i:26677898 original size:12 final size:12
Alignment explanation
Indices: 26677881--26677908 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
26677871 ATTTGACCTC
26677881 AAAACTTCAAAT
1 AAAACTTCAAAT
26677893 AAAACTTCAAAT
1 AAAACTTCAAAT
26677905 AAAA
1 AAAA
26677909 TACTTAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.21
Consensus pattern (12 bp):
AAAACTTCAAAT
Found at i:26680214 original size:27 final size:27
Alignment explanation
Indices: 26680184--26680361 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26680174 ATATTGAGTC
* * * *
26680184 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26680211 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26680238 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26680266 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26680293 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26680320 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26680347 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26680362 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26680323 original size:82 final size:81
Alignment explanation
Indices: 26680205--26680360 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26680195 TGCTATATAA
* *
26680205 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26680270 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26680287 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26680351 CACTTAGTGC
65 CACTTAGTGC
26680361 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26688404 original size:27 final size:27
Alignment explanation
Indices: 26688374--26688551 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26688364 ATATTGAGTC
* * * *
26688374 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
26688401 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26688428 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
26688456 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
26688483 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
26688510 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
26688537 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
26688552 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:26688513 original size:82 final size:81
Alignment explanation
Indices: 26688395--26688550 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26688385 TGCTATATAA
* *
26688395 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
26688460 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
26688477 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
26688541 CACTTAGTGC
65 CACTTAGTGC
26688551 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:26696682 original size:23 final size:24
Alignment explanation
Indices: 26696638--26696682 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 24
26696628 CTTGAATGTT
*
26696638 CATGAGATGGTTAATGTGATATAC
1 CATGAGATGGATAATGTGATATAC
26696662 CATGA-ATGGATATATGT-ATAT
1 CATGAGATGGATA-ATGTGATAT
26696683 GGCCAAATCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 10 0.53
24 9 0.47
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.36
Consensus pattern (24 bp):
CATGAGATGGATAATGTGATATAC
Done.