Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 82 of 186
Found at i:26702911 original size:28 final size:28
Alignment explanation
Indices: 26702871--26702925 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
26702861 AAGCGAGTTA
26702871 GTCTTCCATTTTTAGATTTGATTGAATT
1 GTCTTCCATTTTTAGATTTGATTGAATT
26702899 GTCTTCCATTTTTAGATTTGATTGAAT
1 GTCTTCCATTTTTAGATTTGATTGAAT
26702926 CGACAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.22, C:0.11, G:0.15, T:0.53
Consensus pattern (28 bp):
GTCTTCCATTTTTAGATTTGATTGAATT
Found at i:26716607 original size:46 final size:46
Alignment explanation
Indices: 26716538--26716700 Score: 131
Period size: 46 Copynumber: 3.5 Consensus size: 46
26716528 TCCATAAGCA
*
26716538 AACTCGGACTCAACTCAATGAGCTTGGGCGTTCGCATCCACAAGTG
1 AACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCACAAGTG
* * *
26716584 AACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT-CTC---TCG
1 AACTCGGACTCAACTCAACGAGCTTGG--G-C--GTTCGCATCCACAAGT-G
* * * *
26716631 AACTCGGACTCAACTCAACGAG-TTCAGACATTCGCATCCATAAGTG
1 AACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCACAAGTG
* *
26716677 AACTTGGACTCAAATCAACGAGCT
1 AACTCGGACTCAACTCAACGAGCT
26716701 CGGATGCCTA
Statistics
Matches: 91, Mismatches: 13, Indels: 25
0.71 0.10 0.19
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
46 48 0.53
47 26 0.29
48 1 0.01
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
AACTCGGACTCAACTCAACGAGCTTGGGCGTTCGCATCCACAAGTG
Found at i:26716647 original size:47 final size:47
Alignment explanation
Indices: 26716583--26716745 Score: 172
Period size: 47 Copynumber: 3.5 Consensus size: 47
26716573 ATCCACAAGT
*
26716583 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATATCTC
* * * * **
26716630 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGC-A--TCCATAAGT-
1 GAACTCGGACTCAACTCAACGAGCTC-G-GATGC-CTAGTTACATATCTC
* *
26716676 GAACTTGGACTCAAATCAACGAGCTCGGATGCCTAGTTACATATCTC
1 GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATATCTC
**
26716723 GAACTAAGACTCAACTCAACGAG
1 GAACTCGGACTCAACTCAACGAG
26716746 TTCAGACATT
Statistics
Matches: 91, Mismatches: 18, Indels: 14
0.74 0.15 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 29 0.32
47 50 0.55
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATATCTC
Found at i:26716666 original size:93 final size:93
Alignment explanation
Indices: 26716538--26716801 Score: 404
Period size: 93 Copynumber: 2.8 Consensus size: 93
26716528 TCCATAAGCA
* * * * *
26716538 AACTCGGACTCAACTCAATGAGCTT-GGGCGTTCGCATCCACAAGTGAACTCGGACTCAACTCAA
1 AACTCGGACTCAACTCAACGAG-TTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
26716602 CGAGCTCGGATGCCTAGTTACATCTCTCG
65 CGAGCTCGGATGCCTAGTTACATATCTCG
* *
26716631 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTTGGACTCAAATCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
26716696 GAGCTCGGATGCCTAGTTACATATCTCG
66 GAGCTCGGATGCCTAGTTACATATCTCG
** *
26716724 AACTAAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGAACTCAACTCAAC
1 AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
*
26716789 GAGTTCGGATGCC
66 GAGCTCGGATGCC
26716802 CAAATATCCT
Statistics
Matches: 156, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
92 2 0.01
93 154 0.99
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (93 bp):
AACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAAC
GAGCTCGGATGCCTAGTTACATATCTCG
Found at i:26716783 original size:46 final size:46
Alignment explanation
Indices: 26716630--26716794 Score: 158
Period size: 46 Copynumber: 3.6 Consensus size: 46
26716620 TACATCTCTC
*
26716630 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 GAACTCGAACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
* * * * * * * **
26716676 GAACTTGGACTCAAATCAACGAGCTC-G-GATGC-CTAGTTACATATCT
1 GAACTCGAACTCAACTCAACGAGTTCAGACATTCGC-A--TCCATAAGT
*
26716722 CGAACT-AAGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
1 -GAACTCGA-ACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
26716769 GAACTCGAACTCAACTCAACGAGTTC
1 GAACTCGAACTCAACTCAACGAGTTC
26716795 GGATGCCCAA
Statistics
Matches: 92, Mismatches: 18, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 1 0.01
46 52 0.57
47 28 0.30
48 1 0.01
49 4 0.04
50 1 0.01
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.22
Consensus pattern (46 bp):
GAACTCGAACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGT
Found at i:26721360 original size:17 final size:17
Alignment explanation
Indices: 26721334--26721367 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26721324 TATATAATGG
*
26721334 AAATATGTTATAATATA
1 AAATAAGTTATAATATA
26721351 AAATAAGTTATAATATA
1 AAATAAGTTATAATATA
26721368 TTAAGTGGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (17 bp):
AAATAAGTTATAATATA
Found at i:26722632 original size:24 final size:24
Alignment explanation
Indices: 26722541--26722632 Score: 103
Period size: 24 Copynumber: 3.8 Consensus size: 24
26722531 GAAATGATTT
* *
26722541 TGGCACTATGTGTGCGAATTTGTA
1 TGGCACTATGTGTACGGATTTGTA
* *
26722565 CGACACTATGTGTACGGATTTGTA
1 TGGCACTATGTGTACGGATTTGTA
* * * *
26722589 TGTCTCTATATGTACAGATTTGTA
1 TGGCACTATGTGTACGGATTTGTA
*
26722613 TGGCACTATGTGTGCGGATT
1 TGGCACTATGTGTACGGATT
26722633 GGAATGTCAA
Statistics
Matches: 54, Mismatches: 14, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 54 1.00
ACGTcount: A:0.22, C:0.14, G:0.26, T:0.38
Consensus pattern (24 bp):
TGGCACTATGTGTACGGATTTGTA
Found at i:26730969 original size:42 final size:42
Alignment explanation
Indices: 26730922--26731013 Score: 148
Period size: 42 Copynumber: 2.2 Consensus size: 42
26730912 TGGCCCATAG
* ** *
26730922 GCCCATTTCAATATCACATGTAATGTCAATGGATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
26730964 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
1 GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
26731006 GCCCATTT
1 GCCCATTT
26731014 GGGGAGACTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
GCCCATTTCAATATCACATGAAATACCAATGAATGTATGCAA
Found at i:26732164 original size:27 final size:27
Alignment explanation
Indices: 26732087--26732153 Score: 125
Period size: 27 Copynumber: 2.5 Consensus size: 27
26732077 NNNNNNNNNN
26732087 TAAATCGAGGGTAAAACGGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
*
26732114 TAAATCGAGGGTAAAACAGTAATTCTA
1 TAAATCGAGGGTAAAACGGTAATTCTA
26732141 TAAATCGAGGGTA
1 TAAATCGAGGGTA
26732154 CTTTGGTAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.42, C:0.10, G:0.22, T:0.25
Consensus pattern (27 bp):
TAAATCGAGGGTAAAACGGTAATTCTA
Found at i:26735636 original size:27 final size:27
Alignment explanation
Indices: 26735605--26735658 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
26735595 AAGGCTTATT
26735605 TATGATCTTCATATGTTGAACTTAGTA
1 TATGATCTTCATATGTTGAACTTAGTA
26735632 TATGATCTTCATATGTTGAACTTAGTA
1 TATGATCTTCATATGTTGAACTTAGTA
26735659 CTTCCTCTCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (27 bp):
TATGATCTTCATATGTTGAACTTAGTA
Found at i:26737386 original size:21 final size:20
Alignment explanation
Indices: 26737354--26737394 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
26737344 ATATGTATGA
26737354 ATTTTGATGATTGATGATAG
1 ATTTTGATGATTGATGATAG
26737374 ATTTTGAATGATTGATGATAG
1 ATTTTG-ATGATTGATGATAG
26737395 TTAGACAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (20 bp):
ATTTTGATGATTGATGATAG
Found at i:26744643 original size:83 final size:83
Alignment explanation
Indices: 26744495--26744661 Score: 255
Period size: 83 Copynumber: 2.0 Consensus size: 83
26744485 GAGAGAAAGA
* * * * *
26744495 CCATTCCATAATGTTGGAAATGTGAGTGGTAGTAGAGGTGCAACACGAGATACTGCTGTAGGATC
1 CCATTCCATAATGTTGGAAACGTAAGTGGTAGTAGAGATGCAACACGAGATACTACTGTAAGATC
26744560 TGAAG-CTAGAGCACCTGC
66 TGAAGTC-AGAGCACCTGC
* *
26744578 CCATTTCATAATGTTGGAAACGTAAGTGGTAGTAGAGATGCAACACGAGATACTATTGTAAGATC
1 CCATTCCATAATGTTGGAAACGTAAGTGGTAGTAGAGATGCAACACGAGATACTACTGTAAGATC
26744643 TGAAGTCAGAGCACCTGC
66 TGAAGTCAGAGCACCTGC
26744661 C
1 C
26744662 AGAAGTTATG
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
83 75 0.99
84 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (83 bp):
CCATTCCATAATGTTGGAAACGTAAGTGGTAGTAGAGATGCAACACGAGATACTACTGTAAGATC
TGAAGTCAGAGCACCTGC
Found at i:26755680 original size:42 final size:41
Alignment explanation
Indices: 26755604--26755735 Score: 138
Period size: 42 Copynumber: 3.1 Consensus size: 41
26755594 TTAGGGTTAT
* * *
26755604 TGAGATTCTGTATAAGACCATATTTGGAATATGGCATCGACA
1 TGAGATTTTGTATAAGACCATATCTGG-ATATGGCATCGAAA
* * * * *
26755646 TGTGATTTTGTATAAGACCACATCTGAGACATGGCTTTGAAAA
1 TGAGATTTTGTATAAGACCATATCTG-GATATGGCATCG-AAA
* *
26755689 TGAGATTTCGTATAAGACCATATCTGGGATATGGCATCGATA
1 TGAGATTTTGTATAAGACCATATCT-GGATATGGCATCGAAA
26755731 TGAGA
1 TGAGA
26755736 CATCGTGTAA
Statistics
Matches: 72, Mismatches: 15, Indels: 6
0.77 0.16 0.06
Matches are distributed among these distances:
42 37 0.51
43 34 0.47
44 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.23, T:0.31
Consensus pattern (41 bp):
TGAGATTTTGTATAAGACCATATCTGGATATGGCATCGAAA
Found at i:26755747 original size:42 final size:42
Alignment explanation
Indices: 26755604--26755810 Score: 166
Period size: 43 Copynumber: 4.9 Consensus size: 42
26755594 TTAGGGTTAT
* * *
26755604 TGAGA-TTCTGTATAAGACCATATTTGGAATATGGCATCGACA
1 TGAGACTTC-GTATAAGACCATATCTGGGATATGGCATCGATA
* * * * * * * * *
26755646 TGTGATTTTGTATAAGACCACATCTGAGACATGGCTTTGAAAA
1 TGAGACTTCGTATAAGACCATATCTGGGATATGGCATCG-ATA
*
26755689 TGAGATTTCGTATAAGACCATATCTGGGATATGGCATCGATA
1 TGAGACTTCGTATAAGACCATATCTGGGATATGGCATCGATA
* * * * *
26755731 TGAGACATCGTGTAAGACCATAACTGGGCTATTGGCATCAATA
1 TGAGACTTCGTATAAGACCATATCTGGGATA-TGGCATCGATA
* * * *
26755774 TGTGA-TCCCATGTAAGACCATATCTGGGATATGGCAT
1 TGAGACT-TCGTATAAGACCATATCTGGGATATGGCAT
26755811 TGGCATCTTA
Statistics
Matches: 131, Mismatches: 30, Indels: 8
0.78 0.18 0.05
Matches are distributed among these distances:
42 61 0.47
43 70 0.53
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (42 bp):
TGAGACTTCGTATAAGACCATATCTGGGATATGGCATCGATA
Found at i:26760174 original size:27 final size:27
Alignment explanation
Indices: 26760120--26760230 Score: 154
Period size: 27 Copynumber: 4.1 Consensus size: 27
26760110 AGCATGGCTG
* *
26760120 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
26760146 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
26760173 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
26760200 CCAGATCAGATAAATGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
26760227 CCAG
1 CCAG
26760231 GACGCTTCCT
Statistics
Matches: 77, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
26 15 0.19
27 61 0.79
28 1 0.01
ACGTcount: A:0.38, C:0.23, G:0.24, T:0.15
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:26761683 original size:24 final size:24
Alignment explanation
Indices: 26761655--26761707 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
26761645 CCAACACCGT
*
26761655 TCTCCCTAATCAGCTCCTAAATCC
1 TCTCCCTAATCAGCTCCCAAATCC
* *
26761679 TCTCCCTTATCAGCTCCCAAATCT
1 TCTCCCTAATCAGCTCCCAAATCC
26761703 TCTCC
1 TCTCC
26761708 TGATAGCCTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.21, C:0.43, G:0.04, T:0.32
Consensus pattern (24 bp):
TCTCCCTAATCAGCTCCCAAATCC
Found at i:26763926 original size:38 final size:38
Alignment explanation
Indices: 26763872--26763944 Score: 110
Period size: 38 Copynumber: 1.9 Consensus size: 38
26763862 CATCAGGCTG
* *
26763872 TGATGGTTCCCGAGTGGAAATGGGATAAAATTACTTTT
1 TGATGGTTCCCGAGTGGAAATGGGAAAAAAATACTTTT
**
26763910 TGATGGTTCCTTAGTGGAAATGGGAAAAAAATACT
1 TGATGGTTCCCGAGTGGAAATGGGAAAAAAATACT
26763945 ATGGACTTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.33, C:0.10, G:0.26, T:0.32
Consensus pattern (38 bp):
TGATGGTTCCCGAGTGGAAATGGGAAAAAAATACTTTT
Found at i:26779353 original size:47 final size:48
Alignment explanation
Indices: 26779277--26779407 Score: 140
Period size: 47 Copynumber: 2.8 Consensus size: 48
26779267 CTCAATCGAT
* * * ***
26779277 AGTACCTATACCATAGCCCA-TAACCAAATCAAGGTAACTTATCT-TGG
1 AGTACCTATACCAT-GGCCAGTAGCCAAATCAAGGTAACTCATCTCCAA
* *
26779324 AGTACCTATACCATGGCCAGTAGCTAAATCAAGGTAACTCCTCTCCAA
1 AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCTCCAA
* * *
26779372 AATACCTATACCATGGCCTGTAGCCAACTCAAGGTA
1 AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTA
26779408 TCACTCGCAT
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
46 4 0.06
47 34 0.49
48 32 0.46
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (48 bp):
AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCTCCAA
Found at i:26782050 original size:40 final size:40
Alignment explanation
Indices: 26781981--26782186 Score: 326
Period size: 40 Copynumber: 5.2 Consensus size: 40
26781971 CACCCAAGTA
* **
26781981 CCTTCGGGATTTAG-CCGGATATAACAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
26782020 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26782060 CCTTCGGGACTTAGCCCGGATATAGTAACTCTG-ACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTC-GCACAAATG
*
26782100 CCTTCGAGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26782140 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26782180 CCTTCGG
1 CCTTCGG
26782187 ATCTTAGTCC
Statistics
Matches: 155, Mismatches: 9, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
39 14 0.09
40 141 0.91
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26786783 original size:27 final size:27
Alignment explanation
Indices: 26786745--26786799 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
26786735 CGAATGCCAT
*
26786745 TTACCACAATACTGGTACTCTATTCTA
1 TTACCACAATACTGGCACTCTATTCTA
*
26786772 TTACCACAATACTGGCACTCTGTTCTA
1 TTACCACAATACTGGCACTCTATTCTA
26786799 T
1 T
26786800 CTCGACGATC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.09, T:0.36
Consensus pattern (27 bp):
TTACCACAATACTGGCACTCTATTCTA
Found at i:26789423 original size:40 final size:40
Alignment explanation
Indices: 26789251--26789416 Score: 289
Period size: 40 Copynumber: 4.2 Consensus size: 40
26789241 AACCCAAGTA
* *
26789251 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26789290 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26789330 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
26789370 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
26789410 CCTTCGG
1 CCTTCGG
26789417 ATCTTAGTCC
Statistics
Matches: 122, Mismatches: 4, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
39 13 0.11
40 109 0.89
ACGTcount: A:0.27, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:26793514 original size:126 final size:126
Alignment explanation
Indices: 26793289--26793540 Score: 486
Period size: 126 Copynumber: 2.0 Consensus size: 126
26793279 CATCTTTCTG
26793289 AAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTAGTAACCGG
1 AAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTAGTAACCGG
26793354 CAAGTCCCAAAAAGCTCCGAACCTCAGTAATATTTCTCGGGGGCTTCCAGTTAAGGATGGT
66 CAAGTCCCAAAAAGCTCCGAACCTCAGTAATATTTCTCGGGGGCTTCCAGTTAAGGATGGT
*
26793415 AAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTAGTAACTGG
1 AAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTAGTAACCGG
*
26793480 CAAGTCCCAAAAAGCTCTGAACCTCAGTAATATTTCTCGGGGGCTTCCAGTTAAGGATGGT
66 CAAGTCCCAAAAAGCTCCGAACCTCAGTAATATTTCTCGGGGGCTTCCAGTTAAGGATGGT
26793541 TGAAATTTTG
Statistics
Matches: 124, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 124 1.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (126 bp):
AAGTAGCTTCGTCATTGGTGTGGCTATCATCGAGAAACCCTTTACAAACCGTCTGTAGTAACCGG
CAAGTCCCAAAAAGCTCCGAACCTCAGTAATATTTCTCGGGGGCTTCCAGTTAAGGATGGT
Found at i:26796180 original size:76 final size:76
Alignment explanation
Indices: 26796054--26796196 Score: 250
Period size: 76 Copynumber: 1.9 Consensus size: 76
26796044 CTACCTCTCG
* *
26796054 GTTGGGATCGGGATCCATTACTATAAATAAACACATTTACAATTGTCAGAAATCACCACACTATC
1 GTTGGGATCGGGATCCATTACTATAAACAAACACATTTACAACTGTCAGAAATCACCACACTATC
26796119 AAGTAAGCTCA
66 AAGTAAGCTCA
**
26796130 GTTGGGATCGGGATCCATTACTATAAACAAACACATTTTTAACTGTCAGAAATCACCACACTATC
1 GTTGGGATCGGGATCCATTACTATAAACAAACACATTTACAACTGTCAGAAATCACCACACTATC
26796195 AA
66 AA
26796197 ATAGACACAC
Statistics
Matches: 63, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
76 63 1.00
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.27
Consensus pattern (76 bp):
GTTGGGATCGGGATCCATTACTATAAACAAACACATTTACAACTGTCAGAAATCACCACACTATC
AAGTAAGCTCA
Found at i:26797717 original size:40 final size:40
Alignment explanation
Indices: 26797639--26797862 Score: 285
Period size: 40 Copynumber: 5.5 Consensus size: 40
26797629 ACCCAAGTAT
* *
26797639 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
26797678 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26797718 CTTCGGGACTTATCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26797758 CTTCGGGACTTAGCCCGGGTATAG-CAACT-GCTCGTACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAG--C--ACAAATGC
* *
26797801 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
26797841 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
26797863 CATCCGAATA
Statistics
Matches: 163, Mismatches: 13, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
39 13 0.08
40 112 0.69
41 2 0.01
42 1 0.01
43 34 0.21
44 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:26797835 original size:83 final size:80
Alignment explanation
Indices: 26797639--26797862 Score: 294
Period size: 83 Copynumber: 2.8 Consensus size: 80
26797629 ACCCAAGTAT
* * * *
26797639 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
26797703 CACTAGCATGAATGC
66 CACTAGCATGAATGC
* * *
26797718 CTTCGGGACTTATCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
26797782 CAACT-GC-TCGTACAAATGC
66 C-ACTAGCAT-G----AATGC
*
26797801 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
26797863 CATCCGAATA
Statistics
Matches: 127, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
78 1 0.01
79 15 0.12
80 48 0.38
83 63 0.50
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCATGAATGC
Found at i:26803880 original size:40 final size:40
Alignment explanation
Indices: 26803823--26803963 Score: 196
Period size: 40 Copynumber: 3.5 Consensus size: 40
26803813 TCGAATGATG
26803823 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCT-AGTGACCATA
* * *
26803863 TCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACTATA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGTGACCATA
*
26803903 TCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATA
* *
26803943 TCCGGGTTAAGACCCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGC
26803964 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
39 1 0.01
40 79 0.89
41 9 0.10
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACCATA
Found at i:26815764 original size:40 final size:40
Alignment explanation
Indices: 26815485--26815750 Score: 401
Period size: 40 Copynumber: 6.7 Consensus size: 40
26815475 TCGAATGATG
* * * * *
26815485 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
26815525 TCCGGACTAAGACCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26815565 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26815605 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26815645 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
26815685 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
26815726 -CCAGGTTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
26815751 AACGAGGAGC
Statistics
Matches: 211, Mismatches: 13, Indels: 4
0.93 0.06 0.02
Matches are distributed among these distances:
40 203 0.96
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26815768 original size:120 final size:120
Alignment explanation
Indices: 26815492--26815783 Score: 385
Period size: 120 Copynumber: 2.4 Consensus size: 120
26815482 ATGTCCGGGC
** * * ** *
26815492 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGACCCGAAGGCATTGGTGCGA
1 TAAGTCCCGAAGGCATTTGAAC-GAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTGGTGCGA
*
26815556 GTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
65 GTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCAGGT
** * * *
26815612 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAG
1 TAAGTCCCGAAGGCATTTGAACGAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAG
26815677 TTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCAGGT
66 TTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCAGGT
* * *
26815732 TATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 TAAGTCCCGAAGGCATTTGAACGAGTGA-CTATATCCGGGTTAAGTCCCGAAGG
26815784 TACGTGATTT
Statistics
Matches: 153, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
119 15 0.10
120 129 0.84
121 9 0.06
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TAAGTCCCGAAGGCATTTGAACGAGTGACTATATCCGGGTTAAGTCCCGAAGGCATTGGTGCGAG
TTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCAGGT
Found at i:26823874 original size:40 final size:40
Alignment explanation
Indices: 26823774--26824038 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
26823764 GCTCCTCGTT
* * * *
26823774 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
26823814 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
26823853 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
26823893 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
26823933 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
26823973 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
26824014 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
26824039 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:26823998 original size:80 final size:80
Alignment explanation
Indices: 26823741--26824038 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
26823731 AAATCACGTA
* ** * * *
26823741 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
26823803 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
26823819 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
26823882 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
26823899 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
26823963 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
26823979 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
26824039 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:26824047 original size:41 final size:41
Alignment explanation
Indices: 26823970--26824047 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
26823960 TTTGTATCTC
* * *
26823970 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
26824011 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
26824048 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:26850180 original size:37 final size:37
Alignment explanation
Indices: 26850133--26850203 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
26850123 TGTTAGCACG
* *
26850133 GCCTAAGGCACGTCCGTGTTCTCTGTCGTGTGGAAAC
1 GCCTAAGGCACGCCCGTGTTCTCTATCGTGTGGAAAC
26850170 GCCTAAGGCACGCCCGTGTTCTCTATCGTGTGGA
1 GCCTAAGGCACGCCCGTGTTCTCTATCGTGTGGA
26850204 TTAGAAAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.15, C:0.28, G:0.30, T:0.27
Consensus pattern (37 bp):
GCCTAAGGCACGCCCGTGTTCTCTATCGTGTGGAAAC
Found at i:26859035 original size:27 final size:27
Alignment explanation
Indices: 26859003--26859298 Score: 358
Period size: 27 Copynumber: 10.9 Consensus size: 27
26858993 ATAATTACCA
26859003 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
26859030 AAATACCCTCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
* *
26859057 AAATACCCCCACATGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
26859084 AAATACCCCTCATAGGGTAACATGATCA
1 AAATACCCC-CATAGGGTAAAATGACCG
* *
26859112 AAATACCCCAATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
26859139 AAATACCTCCATAGGATAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
26859166 AAATACCTCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
26859193 AAATACCCCTATGGGGTAAAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCG
* *
26859220 AAATACCCCTATAGGGTAAAATGGCCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
26859247 AAATACCCCTATAAGGTAAAATGACGG
1 AAATACCCCCATAGGGTAAAATGACCG
* ** *
26859274 TAATACCCCTGTAAGGTAAAATGAC
1 AAATACCCCCATAGGGTAAAATGAC
26859299 TGATTTGCCC
Statistics
Matches: 237, Mismatches: 31, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
27 215 0.91
28 22 0.09
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:26859192 original size:109 final size:106
Alignment explanation
Indices: 26858999--26859270 Score: 391
Period size: 109 Copynumber: 2.5 Consensus size: 106
26858989 TAAAATAATT
*
26858999 ACCAAAATACCCCCATAGGGTAAAATGACCGAAATACCCTCATAGGGTAAAATGATCGAAATACC
1 ACCAAAATACCCCAATAGGGTAAAATGACCGAAATACCC-CATA-GGTAAAATGATCGAAATACC
* *
26859064 CCCACATGGTAAAATGACCGAAATACCCCTCATAGGGTAACATG
64 CCCACAGGGTAAAATGACCGAAATACCCCT-ATAGGGTAAAATG
* *
26859108 ATCAAAATACCCCAATAGGGTAAAATGATCGAAATACCTCCATAGGATAAAATGATCGAAATACC
1 ACCAAAATACCCCAATAGGGTAAAATGACCGAAATACC-CCATAGG-TAAAATGATCGAAATACC
* * *
26859173 TCCATAGGGTAAAATGACCGAAATACCCCTATGGGGTAAAATG
64 CCCACAGGGTAAAATGACCGAAATACCCCTATAGGGTAAAATG
* *
26859216 ACCAAAATACCCCTATAGGGTAAAATGGCCGAAATACCCCTATAAGGTAAAATGA
1 ACCAAAATACCCCAATAGGGTAAAATGACCGAAATACCCC-AT-AGGTAAAATGA
26859271 CGGTAATACC
Statistics
Matches: 147, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
107 2 0.01
108 57 0.39
109 87 0.59
110 1 0.01
ACGTcount: A:0.42, C:0.22, G:0.17, T:0.19
Consensus pattern (106 bp):
ACCAAAATACCCCAATAGGGTAAAATGACCGAAATACCCCATAGGTAAAATGATCGAAATACCCC
CACAGGGTAAAATGACCGAAATACCCCTATAGGGTAAAATG
Found at i:26860763 original size:55 final size:52
Alignment explanation
Indices: 26860633--26860818 Score: 135
Period size: 54 Copynumber: 3.5 Consensus size: 52
26860623 AGGATACCAA
* **
26860633 GTAAGACCATGCCAAGGCATGGCATTGCTAAGTTTTACAAGGTAAGGAAATCAT
1 GTAAGACCATGCCAAGGCATGGCATTGATAAG-ACTACAA-GTAAGGAAATCAT
* **
26860687 GTAAGACCATGTCAATACATGGCATTGATAA-ACTACAA-TAAGGCAAATATCCTAT
1 GTAAGACCATGCCAAGGCATGGCATTGATAAGACTACAAGTAAGG--AA-AT-C-AT
* * * * * * *
26860742 GTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATA-AGGTAAGGATACCAT
1 GTAAGACCATGCCAAGGCATGGCATTGATAAG-AC-TACAAGTAAGGAAATCAT
* *
26860795 GTAAGACCATGTCAAGACATGGCA
1 GTAAGACCATGCCAAGGCATGGCA
26860819 ATGGTAAGTT
Statistics
Matches: 105, Mismatches: 18, Indels: 19
0.74 0.13 0.13
Matches are distributed among these distances:
50 5 0.05
52 7 0.07
53 26 0.25
54 29 0.28
55 28 0.27
56 1 0.01
57 2 0.02
58 7 0.07
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.23
Consensus pattern (52 bp):
GTAAGACCATGCCAAGGCATGGCATTGATAAGACTACAAGTAAGGAAATCAT
Found at i:26860804 original size:53 final size:53
Alignment explanation
Indices: 26860621--26860828 Score: 195
Period size: 53 Copynumber: 3.9 Consensus size: 53
26860611 CATTAGGGTT
* * * * * *
26860621 TAAGGATACCAAGTAAGACCATGCCAAGGCATGGCATTGCTAAGTTTTACAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAG-TTCATAAGG
* * * * * * * *
26860675 TAAGGAAATCATGTAAGACCATGTCAATACATGGCATTGATAAACTACAATAAGG
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGG
* * *
26860730 CAA--ATATCCTATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGG
1 TAAGGATA-CC-ATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
*
26860783 TAAGGATACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTT
1 TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTT
26860829 TAAAAAGGAA
Statistics
Matches: 122, Mismatches: 26, Indels: 13
0.76 0.16 0.08
Matches are distributed among these distances:
53 43 0.35
54 41 0.34
55 38 0.31
ACGTcount: A:0.38, C:0.17, G:0.23, T:0.23
Consensus pattern (53 bp):
TAAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGG
Found at i:26863266 original size:43 final size:43
Alignment explanation
Indices: 26863198--26863326 Score: 204
Period size: 43 Copynumber: 3.0 Consensus size: 43
26863188 CACTATTCCG
* * *
26863198 AGGCCCGAATACATATCACCAGCACGAAGCCTGCTAGGCACGA
1 AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
*
26863241 AGGCCCGAATACACATCATTGGCACGAAGCCTGCTAGGCACGA
1 AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
* *
26863284 AAGCCCGAATACACATCATCGGCACGAAGCTTGCTAGGCACGA
1 AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
26863327 GGACGTTATA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 79 1.00
ACGTcount: A:0.32, C:0.31, G:0.24, T:0.13
Consensus pattern (43 bp):
AGGCCCGAATACACATCATCGGCACGAAGCCTGCTAGGCACGA
Found at i:26879091 original size:55 final size:53
Alignment explanation
Indices: 26879032--26879167 Score: 139
Period size: 55 Copynumber: 2.5 Consensus size: 53
26879022 GCAAGGAAAT
*
26879032 CATGTAAGACCATGTCAAGACATGGCATTAATAAACTACGATAAGGCAAAGATCC
1 CATGTAAGACCATGTCAAGACATGGCATTAAT-AACTAC-ATAAGGCAAAGATAC
* * * * ** * * * *
26879087 CATGTAAGCCCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATAC
1 CATGTAAGACCATGTCAAGACATGGCATTAATAACTACATAAGGCAAAGATAC
*
26879140 CACGT-AGACCATGTCAAGACATGGCATT
1 CATGTAAGACCATGTCAAGACATGGCATT
26879168 GGTAAGTTTA
Statistics
Matches: 65, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
52 19 0.29
53 17 0.26
54 3 0.05
55 26 0.40
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.20
Consensus pattern (53 bp):
CATGTAAGACCATGTCAAGACATGGCATTAATAACTACATAAGGCAAAGATAC
Found at i:26879163 original size:52 final size:53
Alignment explanation
Indices: 26879035--26879175 Score: 131
Period size: 52 Copynumber: 2.6 Consensus size: 53
26879025 AGGAAATCAT
* * ** * * * *
26879035 GTAAGACCATGTCAAGACATGGCATTAATAAACTACGATAAGGCAAAGATCCCAT
1 GTAAGACCATGCCAAGACATGGCAATGGT-AAGTTC-ATAAGGCAAAGATACCAC
* * * *
26879090 GTAAGCCCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATACCAC
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
* *
26879143 GT-AGACCATGTCAAGACATGGCATTGGTAAGTT
1 GTAAGACCATGCCAAGACATGGCAATGGTAAGTT
26879176 TAAAAAGGAA
Statistics
Matches: 69, Mismatches: 17, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
52 26 0.38
53 17 0.25
54 3 0.04
55 23 0.33
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (53 bp):
GTAAGACCATGCCAAGACATGGCAATGGTAAGTTCATAAGGCAAAGATACCAC
Found at i:26883536 original size:20 final size:19
Alignment explanation
Indices: 26883510--26883555 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
26883500 TTAATTCAGC
* *
26883510 AATTTTTTATTTTTATTTT
1 AATTTTTTATTTTCAATTT
*
26883529 AATATTTTTGTTTTCAATTT
1 AAT-TTTTTATTTTCAATTT
26883549 AATTTTT
1 AATTTTT
26883556 ACATTTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (19 bp):
AATTTTTTATTTTCAATTT
Found at i:26888942 original size:49 final size:47
Alignment explanation
Indices: 26888889--26889184 Score: 153
Period size: 46 Copynumber: 6.3 Consensus size: 47
26888879 CGTGTCCTAT
*
26888889 ACAGGTCTTACGCTAACTTTCATATATCGAGGCCGATGCCATGTCCCAG
1 ACAGGTCTTACACTAAC-TTCATATATC-AGGCCGATGCCATGTCCCAG
** * * * *
26888938 ACAGGTCTTACACTGGCTCTCATCTATCAGTGTCAATGCCATGTCCTAG
1 ACAGGTCTTACACTAACT-TCATATATCAG-GCCGATGCCATGTCCCAG
* * * * * * ** *
26888987 ACAAGTCTTACACTGAC-ACACA-A-CAAGCTGACCCCATATCCCAG
1 ACAGGTCTTACACTAACTTCATATATCAGGCCGATGCCATGTCCCAG
*
26889031 ACAGGTCTTACACTAGCTT-ATATATCCTGAGGCCGATG-CATGTCCCAG
1 ACAGGTCTTACACTAACTTCATATAT-C--AGGCCGATGCCATGTCCCAG
* * * * * **
26889079 ACATGTCTTACACTAGC-TC-TCGTCTCAATGCCGATG-CATGTCCTGG
1 ACAGGTCTTACACTAACTTCAT-ATATC-AGGCCGATGCCATGTCCCAG
** ** **
26889125 ACACATCTTACACTGGCTCTCATA-ATGTGGCCGATG-CATGTCCCAG
1 ACAGGTCTTACACTAACT-TCATATATCAGGCCGATGCCATGTCCCAG
*
26889171 ACATGTCTTACACT
1 ACAGGTCTTACACT
26889185 GGCTCACATA
Statistics
Matches: 185, Mismatches: 49, Indels: 29
0.70 0.19 0.11
Matches are distributed among these distances:
44 27 0.15
45 3 0.02
46 58 0.31
47 7 0.04
48 32 0.17
49 58 0.31
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (47 bp):
ACAGGTCTTACACTAACTTCATATATCAGGCCGATGCCATGTCCCAG
Found at i:26890023 original size:31 final size:31
Alignment explanation
Indices: 26889987--26890051 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
26889977 AGAATGGCTG
26889987 AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
1 AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
26890018 AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
1 AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
26890049 AAA
1 AAA
26890052 GATGAAGGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.51, C:0.03, G:0.31, T:0.15
Consensus pattern (31 bp):
AAAATTTCGGTGGAGGAGAAAGGAAAATGAA
Found at i:26895330 original size:21 final size:20
Alignment explanation
Indices: 26895296--26895335 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
26895286 CTCTTAAAAC
*
26895296 AGAGCACACGCCCGTGTGCA
1 AGAGCACACACCCGTGTGCA
26895316 AGAGCAACACACCCGTGTGC
1 AGAGC-ACACACCCGTGTGC
26895336 CCTTGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.28, C:0.35, G:0.28, T:0.10
Consensus pattern (20 bp):
AGAGCACACACCCGTGTGCA
Found at i:26896130 original size:30 final size:30
Alignment explanation
Indices: 26896096--26896166 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
26896086 CACTAAAACA
*
26896096 AAATTAAAAGATCCTATACATGTCATA-TT
1 AAATTAAAAGATCCTATACATGCCATACTT
26896125 CAAATTAAAAGATCCTATACATGCCATACTT
1 -AAATTAAAAGATCCTATACATGCCATACTT
*
26896156 AAAATAAAAGA
1 AAATTAAAAGA
26896167 ACTAACTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
30 36 0.95
31 2 0.05
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.28
Consensus pattern (30 bp):
AAATTAAAAGATCCTATACATGCCATACTT
Found at i:26896693 original size:49 final size:49
Alignment explanation
Indices: 26896632--26896943 Score: 163
Period size: 49 Copynumber: 6.6 Consensus size: 49
26896622 ACATTAAAGT
* * * *
26896632 CGATGCCGTGTCCTATACAGGTCTTACGCTAACTTTCATATATCGAG-GC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATC-AGTGC
* * * *
26896681 CGATGCCATGTCCTAGATAGGTCTTACACTAGCTCTCATCTATCAGTGT
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGTGC
* * * * * *
26896730 CAATGCCATGTCCTAGACAAGTCTTACACTGA--CACACA-A-CA-AGC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGTGC
* ** * * * *
26896774 TGACCCCATATCCCAGACAGGTCTTACACTAGCT-T-GTATATCCTGAG-GC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATAT-C--AGTGC
* * * * * *
26896823 CGATG-CATGTCCCAGACATGTCTTACACTAGCTCTC--GTCTCAATGC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGTGC
* * **
26896869 CGATG-CATGTCCTGGACATGTCTTACACTGGCTCTCATA-AT--GTGGC
1 CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGT-GC
* *
26896915 CGATG-CATGTCCCAGACATGTCTTACACT
1 CGATGCCATGTCCTAGACAGGTCTTACACT
26896944 GGCTCACATA
Statistics
Matches: 202, Mismatches: 46, Indels: 33
0.72 0.16 0.12
Matches are distributed among these distances:
44 25 0.12
45 5 0.02
46 65 0.32
47 6 0.03
48 30 0.15
49 71 0.35
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACAGGTCTTACACTAACTCTCATATATCAGTGC
Found at i:26896846 original size:48 final size:47
Alignment explanation
Indices: 26896784--26896948 Score: 176
Period size: 46 Copynumber: 3.5 Consensus size: 47
26896774 TGACCCCATA
*
26896784 TCCCAGACAGGTCTTACACTAGCT-TGTATATCCTGAGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTCTG-ATAT-CTGAGGCCGATGCATG
* * *
26896832 TCCCAGACATGTCTTACACTAGCTCTCG-TCTC-AATGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTCT-GATATCTGAGGCCGATGCATG
** * * * *
26896878 TCCTGGACATGTCTTACACTGGCTCTCATA-ATGTGGCCGATGCATG
1 TCCCAGACATGTCTTACACTAGCTCTGATATCTGAGGCCGATGCATG
*
26896924 TCCCAGACATGTCTTACACTGGCTC
1 TCCCAGACATGTCTTACACTAGCTC
26896949 ACATACCACT
Statistics
Matches: 98, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
46 70 0.71
47 1 0.01
48 25 0.26
49 1 0.01
50 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.21, T:0.28
Consensus pattern (47 bp):
TCCCAGACATGTCTTACACTAGCTCTGATATCTGAGGCCGATGCATG
Found at i:26900371 original size:19 final size:20
Alignment explanation
Indices: 26900331--26900371 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26900321 TGATATTATG
26900331 GTTTTGAGATTGAATGATAT
1 GTTTTGAGATTGAATGATAT
* *
26900351 GTTTTGATATTGGAT-ATAT
1 GTTTTGAGATTGAATGATAT
26900370 GT
1 GT
26900372 ATATTCGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.27, C:0.00, G:0.24, T:0.49
Consensus pattern (20 bp):
GTTTTGAGATTGAATGATAT
Found at i:26903960 original size:43 final size:40
Alignment explanation
Indices: 26903913--26904060 Score: 125
Period size: 43 Copynumber: 3.5 Consensus size: 40
26903903 GTGTTCTCGG
* *
26903913 GTAAGACCACGTCTAGGAAGTTGGCATCGATATGTGATTGCTT
1 GTAAGACCACGTCT-GGAA-TCGGCATCGATATGTGATT-CAT
* * * *
26903956 GTAAGACCATGTTTGGGACATCAGCATCGTATATGTGATTCGT
1 GTAAGACCACGTCT-GGA-ATCGGCATCG-ATATGTGATTCAT
* ** *
26903999 ATAAGACCTTGTCTGGAATAGCGGTATCGATATGTGATTACAT
1 GTAAGACCACGTCTGGAAT--CGGCATCGATATGTGATT-CAT
26904042 GTAAGACCACGTCTGGAAT
1 GTAAGACCACGTCTGGAAT
26904061 GTTGGCATTG
Statistics
Matches: 85, Mismatches: 15, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 2 0.02
42 13 0.15
43 59 0.69
44 11 0.13
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (40 bp):
GTAAGACCACGTCTGGAATCGGCATCGATATGTGATTCAT
Found at i:26904261 original size:19 final size:18
Alignment explanation
Indices: 26904237--26904281 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
26904227 TGATAAAAAT
26904237 AATATATGATGCAAT-TGAA
1 AATATATG-TG-AATATGAA
26904256 AATATATGTGAATATGAA
1 AATATATGTGAATATGAA
26904274 AAGTATAT
1 AA-TATAT
26904282 TCGGCCTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.12
18 8 0.33
19 13 0.54
ACGTcount: A:0.49, C:0.02, G:0.16, T:0.33
Consensus pattern (18 bp):
AATATATGTGAATATGAA
Found at i:26904375 original size:22 final size:22
Alignment explanation
Indices: 26904350--26904398 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
26904340 TGAATGCATA
26904350 AGTATAATTGCTTTTATATAAT
1 AGTATAATTGCTTTTATATAAT
26904372 AGTATAATTGCTTTTATATAAT
1 AGTATAATTGCTTTTATATAAT
26904394 AGTAT
1 AGTAT
26904399 GACTTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (22 bp):
AGTATAATTGCTTTTATATAAT
Found at i:26908842 original size:19 final size:18
Alignment explanation
Indices: 26908818--26908862 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 18
26908808 TGATAAAAAT
26908818 AATATATGATGCAAT-TGAA
1 AATATATG-TG-AATATGAA
26908837 AATATATGTGAATATGAA
1 AATATATGTGAATATGAA
26908855 AAGTATAT
1 AA-TATAT
26908863 TCGGCCTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 3 0.12
18 8 0.33
19 13 0.54
ACGTcount: A:0.49, C:0.02, G:0.16, T:0.33
Consensus pattern (18 bp):
AATATATGTGAATATGAA
Found at i:26908956 original size:22 final size:22
Alignment explanation
Indices: 26908931--26908979 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
26908921 TGAATGCATA
26908931 AGTATAATTGCTTTTATATAAT
1 AGTATAATTGCTTTTATATAAT
26908953 AGTATAATTGCTTTTATATAAT
1 AGTATAATTGCTTTTATATAAT
26908975 AGTAT
1 AGTAT
26908980 GACTTTTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (22 bp):
AGTATAATTGCTTTTATATAAT
Found at i:26915903 original size:27 final size:27
Alignment explanation
Indices: 26915838--26916067 Score: 250
Period size: 27 Copynumber: 8.6 Consensus size: 27
26915828 NNNNNNNCTA
* *
26915838 TAGGGTAGAATTACCAAAACACCCCTAG
1 TAGGGTAGAATTACCGAAATACCCCT-G
** * * *
26915866 T-TTGTAAAATTACCAAAATACCCTTG
1 TAGGGTAGAATTACCGAAATACCCCTG
**
26915892 TAGGGTAGAATTACTAAAATA-CCCTAG
1 TAGGGTAGAATTACCGAAATACCCCT-G
* *
26915919 TAAGGTAGAATTACCG-AATACCTCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
*
26915945 TAGGGTAGAATTACTGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * * *
26915972 TGGGGTAAAATTACTGAAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
26915999 TAGGGTAGAATTACCGAAATACCCCTG
1 TAGGGTAGAATTACCGAAATACCCCTG
* * *
26916026 TAGGGTAGAATTATCGCAATACCCCTA
1 TAGGGTAGAATTACCGAAATACCCCTG
26916053 TAGGGTAGAATTACC
1 TAGGGTAGAATTACC
26916068 NNNNNNNNNN
Statistics
Matches: 170, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
26 24 0.14
27 145 0.85
28 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.26
Consensus pattern (27 bp):
TAGGGTAGAATTACCGAAATACCCCTG
Found at i:26916033 original size:107 final size:108
Alignment explanation
Indices: 26915835--26916067 Score: 292
Period size: 107 Copynumber: 2.2 Consensus size: 108
26915825 NNNNNNNNNN
** * *
26915835 CTATAGGGTAGAATTACCAAAACACCCCTAGTTTGTAAAATTACCAAAATACCCTTGTAGGGTAG
1 CTATAGGGTAGAATTACCAAAACACCCCTAGTGGGTAAAATTACCAAAATACCCCTATAGGGTAG
* *
26915900 AATTACTAAAATACCCTAGTAAGGTAGAATTACCG-AATACCT
66 AATTACCAAAATACCCTAGTAAGGTAGAATTACCGCAATACCC
* ** * **
26915942 CTGTAGGGTAGAATTACTGAAATACCCCT-GTGGGGTAAAATTACTGAAATACCCCTATAGGGTA
1 CTATAGGGTAGAATTACCAAAACACCCCTAGT-GGGTAAAATTACCAAAATACCCCTATAGGGTA
* * *
26916006 GAATTACCGAAATACCCCT-GTAGGGTAGAATTATCGCAATACCC
65 GAATTACCAAAATA-CCCTAGTAAGGTAGAATTACCGCAATACCC
26916050 CTATAGGGTAGAATTACC
1 CTATAGGGTAGAATTACC
26916068 NNNNNNNNNN
Statistics
Matches: 106, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
106 2 0.02
107 78 0.74
108 26 0.25
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (108 bp):
CTATAGGGTAGAATTACCAAAACACCCCTAGTGGGTAAAATTACCAAAATACCCCTATAGGGTAG
AATTACCAAAATACCCTAGTAAGGTAGAATTACCGCAATACCC
Found at i:26916471 original size:6 final size:6
Alignment explanation
Indices: 26916462--26916583 Score: 97
Period size: 6 Copynumber: 19.8 Consensus size: 6
26916452 TTGCATTCAC
* *
26916462 ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG
1 ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG
* * * * *
26916512 ATTCTG GTTCTG GTTCTG ATTTTG ATTCTG -TCACCTG ATTTTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
*
26916561 ACTCTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCT
26916584 AGTTATGATA
Statistics
Matches: 93, Mismatches: 14, Indels: 18
0.74 0.11 0.14
Matches are distributed among these distances:
5 5 0.05
6 76 0.82
7 8 0.09
8 4 0.04
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:26916490 original size:25 final size:25
Alignment explanation
Indices: 26916462--26916523 Score: 97
Period size: 25 Copynumber: 2.5 Consensus size: 25
26916452 TTGCATTCAC
*
26916462 ATTCTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGTTACCTAATACTG
*
26916487 ATTCTGATTCTGTTACCTAATTCTG
1 ATTCTGATTCTGTTACCTAATACTG
*
26916512 ATTCTGGTTCTG
1 ATTCTGATTCTG
26916524 GTTCTGATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGTTACCTAATACTG
Found at i:26916539 original size:43 final size:43
Alignment explanation
Indices: 26916462--26916588 Score: 148
Period size: 43 Copynumber: 2.9 Consensus size: 43
26916452 TTGCATTCAC
*
26916462 ATTCTGATTCT-GTTACCTGATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGGTT--CTGATTCTGATTCTGATTCTGTTACCTA
* * * *
26916506 ATTCTGATTCTGGTTCTGGTTCTGATTTTGATTCTGTCACCTG
1 ATTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTA
* **
26916549 ATTTTGATTCTGACTCTGATTCTGATTCTGATTCTAGTTA
1 ATTCTGATTCTGGTTCTGATTCTGATTCTGATTCT-GTTA
26916589 TGATAATGTT
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
43 53 0.76
44 14 0.20
45 3 0.04
ACGTcount: A:0.17, C:0.18, G:0.17, T:0.48
Consensus pattern (43 bp):
ATTCTGATTCTGGTTCTGATTCTGATTCTGATTCTGTTACCTA
Found at i:26916540 original size:18 final size:18
Alignment explanation
Indices: 26916462--26916583 Score: 97
Period size: 19 Copynumber: 6.6 Consensus size: 18
26916452 TTGCATTCAC
26916462 ATTCTGATTCTG-TTACCTG
1 ATTCTGATTCTGATT--CTG
*
26916481 ATACTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
*
26916499 -TTACCTAATTCTGATTCTG
1 ATT--CTGATTCTGATTCTG
* * *
26916518 GTTCTGGTTCTGATTTTG
1 ATTCTGATTCTGATTCTG
* *
26916536 ATTCTG-TCACCTGATTTTG
1 ATTCTGAT--TCTGATTCTG
*
26916555 ATTCTGACTCTGATTCTG
1 ATTCTGATTCTGATTCTG
26916573 ATTCTGATTCT
1 ATTCTGATTCT
26916584 AGTTATGATA
Statistics
Matches: 84, Mismatches: 12, Indels: 15
0.76 0.11 0.14
Matches are distributed among these distances:
17 2 0.02
18 38 0.45
19 40 0.48
20 4 0.05
ACGTcount: A:0.16, C:0.19, G:0.16, T:0.48
Consensus pattern (18 bp):
ATTCTGATTCTGATTCTG
Found at i:26916592 original size:18 final size:18
Alignment explanation
Indices: 26916526--26916592 Score: 57
Period size: 18 Copynumber: 3.7 Consensus size: 18
26916516 TGGTTCTGGT
*
26916526 TCTGATTTTGATTCTGTCAC
1 TCTGATTATGATTCTG--AC
*
26916546 -CTGATTTTGATTCTGAC
1 TCTGATTATGATTCTGAC
* *
26916563 TCTGATTCTGATTCTGAT
1 TCTGATTATGATTCTGAC
26916581 TCT-AGTTATGAT
1 TCTGA-TTATGAT
26916593 AATGTTTCTT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
17 3 0.07
18 24 0.57
19 15 0.36
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.49
Consensus pattern (18 bp):
TCTGATTATGATTCTGAC
Found at i:26918254 original size:27 final size:27
Alignment explanation
Indices: 26918224--26918285 Score: 88
Period size: 27 Copynumber: 2.3 Consensus size: 27
26918214 CAAAACCGTC
* * *
26918224 ATTTTACCCTACAAGGGTATTTTAGTA
1 ATTTTACACTACAAGAGTATTTCAGTA
*
26918251 ATTTTACACTACAAGAGTATTTCGGTA
1 ATTTTACACTACAAGAGTATTTCAGTA
26918278 ATTTTACA
1 ATTTTACA
26918286 AACTGGGGGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (27 bp):
ATTTTACACTACAAGAGTATTTCAGTA
Found at i:26918297 original size:27 final size:27
Alignment explanation
Indices: 26918267--26918540 Score: 243
Period size: 27 Copynumber: 10.2 Consensus size: 27
26918257 CACTACAAGA
26918267 GTATTTCGGTAATTTTACAAACTGGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* *
26918294 GTATTTTGGTAATTTTACAAATTGGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* *
26918321 GTCTTTCGGTAATTTTAC-AA-TGCAAGG
1 GTATTTCGGTAATTTTACAAACTG--GGG
** * **
26918348 GTATTTTAGAAATTTTACAAACCAGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* *
26918375 GTATTTCGATAATTTTACAAAC-CGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* * *
26918401 GTATTTCGATAATTTTACAAACTAGGT
1 GTATTTCGGTAATTTTACAAACTGGGG
* * * **
26918428 GTATTTCGATAACTTTACAATCTGAAG
1 GTATTTCGGTAATTTTACAAACTGGGG
* * *
26918455 GAATTTCAGAAATTTTACAAACTGGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
* **
26918482 GTATTTTC-GTAATATTACAAA-TTAGG
1 GTA-TTTCGGTAATTTTACAAACTGGGG
* *
26918508 GTATTTCGGTAATTTTACAAATTAGGG
1 GTATTTCGGTAATTTTACAAACTGGGG
26918535 GTATTT
1 GTATTT
26918541 TGGTGTAATA
Statistics
Matches: 198, Mismatches: 41, Indels: 16
0.78 0.16 0.06
Matches are distributed among these distances:
25 6 0.03
26 45 0.23
27 141 0.71
28 6 0.03
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (27 bp):
GTATTTCGGTAATTTTACAAACTGGGG
Found at i:26918466 original size:107 final size:106
Alignment explanation
Indices: 26918267--26918540 Score: 327
Period size: 107 Copynumber: 2.5 Consensus size: 106
26918257 CACTACAAGA
* * * * *
26918267 GTATTTCGGTAATTTTACAAACTGGGGGTATTTTGGTAATTTTACAAATTGGGGGTCTTTCGGTA
1 GTATTTC-GTAATTTTACAAAC-CGGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTCGATA
* * *
26918332 ATTTTACAATGCAAGGGTATTTTAGAAATTTTACAAACCAGGG
64 ACTTTACAATGCAAGGGAATTTCAGAAATTTTACAAACCAGGG
* * *
26918375 GTATTTCGATAATTTTACAAACCGGGGTATTTCGATAATTTTACAAACTAGGTGTATTTCGATAA
1 GTATTTCG-TAATTTTACAAACCGGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTCGATAA
**
26918440 CTTTACAAT-CTGAA-GGAATTTCAGAAATTTTACAAACTGGGG
65 CTTTACAATGC--AAGGGAATTTCAGAAATTTTACAAACCAGGG
* ***
26918482 GTATTTTCGTAATATTACAAATTAGGGTATTTCGGTAATTTTACAAATTAGGGGTATTT
1 GTA-TTTCGTAATTTTACAAACCGGGGTATTTCGGTAATTTTACAAATTAGGGGTATTT
26918541 TGGTGTAATA
Statistics
Matches: 142, Mismatches: 20, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
106 1 0.01
107 114 0.80
108 27 0.19
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (106 bp):
GTATTTCGTAATTTTACAAACCGGGGTATTTCGGTAATTTTACAAATTAGGGGTATTTCGATAAC
TTTACAATGCAAGGGAATTTCAGAAATTTTACAAACCAGGG
Found at i:26920059 original size:28 final size:28
Alignment explanation
Indices: 26920019--26920100 Score: 128
Period size: 28 Copynumber: 2.9 Consensus size: 28
26920009 GCAATCAAAT
*
26920019 ATGGCACTCAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAGATATTGAGA
26920047 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAGATATTGAGA
* * *
26920075 ATGACACTTAGAGTGCGAAATATTGA
1 ATGGCACTTAGTGTGCGAGATATTGA
26920101 ATGATTCAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.32, C:0.12, G:0.29, T:0.27
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAGATATTGAGA
Found at i:26920536 original size:21 final size:22
Alignment explanation
Indices: 26920507--26920547 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26920497 GAACGTATTG
26920507 TGATGTATGTGAAAATGAAATA
1 TGATGTATGTGAAAATGAAATA
**
26920529 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGAAAATGAAA
26920548 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.41, C:0.05, G:0.22, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGAAAATGAAATA
Found at i:26926687 original size:28 final size:29
Alignment explanation
Indices: 26926651--26926725 Score: 109
Period size: 28 Copynumber: 2.7 Consensus size: 29
26926641 TCAAATATGG
* *
26926651 CACTCAGTGTACGAAATATTGAGAATG-T
1 CACTTAGTGTGCGAAATATTGAGAATGAT
*
26926679 CACTTAGTGTGCGAGATATTGAGAATGAT
1 CACTTAGTGTGCGAAATATTGAGAATGAT
26926708 -ACTTAGTGTGCGAAATAT
1 CACTTAGTGTGCGAAATAT
26926726 CGAATGATTC
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 41 0.98
29 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (29 bp):
CACTTAGTGTGCGAAATATTGAGAATGAT
Found at i:26926891 original size:41 final size:42
Alignment explanation
Indices: 26926845--26926958 Score: 105
Period size: 40 Copynumber: 2.8 Consensus size: 42
26926835 GGTGATATTC
*
26926845 GGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTG-AATTAAAT-A
1 GGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGTAA-AAAATCA
*
26926886 GGGC-TT-ATGCCTAGC-AGGCTTGTTGCTGGTGTAAAAAATCA
1 GGGCTTTGA-GCCTAGCAAGCCTTG-TGCTGGTGTAAAAAATCA
* * * *
26926927 -GACTTTGAGTCTAGCAGGCCTTGTGCCGGTGT
1 GGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGT
26926959 GAGATACAGG
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
39 7 0.12
40 23 0.39
41 23 0.39
42 6 0.10
ACGTcount: A:0.21, C:0.18, G:0.31, T:0.30
Consensus pattern (42 bp):
GGGCTTTGAGCCTAGCAAGCCTTGTGCTGGTGTAAAAAATCA
Found at i:26927166 original size:21 final size:22
Alignment explanation
Indices: 26927135--26927175 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26927125 GAATGTATTG
*
26927135 TGATGTATGTGGAAATGAAATA
1 TGATGTATGTGCAAATGAAATA
*
26927157 TGAT-TATGTGCCAATGAAA
1 TGATGTATGTGCAAATGAAA
26927176 CATAAATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.39, C:0.05, G:0.24, T:0.32
Consensus pattern (22 bp):
TGATGTATGTGCAAATGAAATA
Found at i:26928826 original size:27 final size:27
Alignment explanation
Indices: 26928771--26928921 Score: 148
Period size: 27 Copynumber: 5.7 Consensus size: 27
26928761 GGGGTGTTAC
* *
26928771 ATTT-GATAATTTTACAAACTG-GGGG
1 ATTTCGATAATTTTACAATCTGAGGGT
* *
26928796 ATTTCGATAATTTTTCAATCTGATGGT
1 ATTTCGATAATTTTACAATCTGAGGGT
*
26928823 ATTTCGATAATTTTACAATCTTAGGGT
1 ATTTCGATAATTTTACAATCTGAGGGT
*
26928850 ATTTCGGTAATTTTACTAATC-GAGGGT
1 ATTTCGATAATTTTAC-AATCTGAGGGT
* ***
26928877 ATTT-TAGTAATTTTACAATAAAAGGGT
1 ATTTCGA-TAATTTTACAATCTGAGGGT
* *
26928904 ATTTTGGTAATTTTACAA
1 ATTTCGATAATTTTACAA
26928922 ATTGGGATCT
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
25 4 0.04
26 18 0.17
27 79 0.75
28 4 0.04
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (27 bp):
ATTTCGATAATTTTACAATCTGAGGGT
Found at i:26933836 original size:39 final size:40
Alignment explanation
Indices: 26933741--26933963 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
26933731 TTGAATGATG
*
26933741 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
26933779 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
26933820 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26933859 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26933898 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26933937 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26933964 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:26933927 original size:79 final size:81
Alignment explanation
Indices: 26933741--26933963 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
26933731 TTGAATGATG
* * *
26933741 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
26933802 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
26933820 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
26933882 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
26933898 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
26933962 TG
66 TG
26933964 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:26933985 original size:79 final size:79
Alignment explanation
Indices: 26933741--26933996 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
26933731 TTGAATGATG
* * * *
26933741 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
26933802 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
26933820 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
26933884 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
26933898 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
26933962 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
26933978 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
26933997 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:26941865 original size:79 final size:81
Alignment explanation
Indices: 26941729--26941913 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
26941719 TTGAATGATG
*
26941729 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
26941793 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26941808 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26941870 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
26941888 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26941914 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:26941927 original size:40 final size:40
Alignment explanation
Indices: 26941730--26941913 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
26941720 TGAATGATGT
* * * *
26941730 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26941770 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26941810 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26941848 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26941889 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26941914 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26941935 original size:79 final size:79
Alignment explanation
Indices: 26941782--26941946 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
26941772 GGACTAAGAT
* **
26941782 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
26941847 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26941861 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
26941924 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26941940 CCGAAGG
1 CCGAAGG
26941947 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26943736 original size:27 final size:27
Alignment explanation
Indices: 26943710--26943927 Score: 235
Period size: 27 Copynumber: 8.1 Consensus size: 27
26943700 TTTACCCTAC
*
26943710 AGGGGTATTTCGGTAATTTTACACTAC-
1 AGGGGTATTTCGGTAATTTTACA-AACT
** *
26943737 AAAGGTATATCGGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
* *
26943764 AGGGGTATTTTGGTAATTTTATAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
* *
26943791 AGGGGTATTTTGGTAATTTTACAATCT
1 AGGGGTATTTCGGTAATTTTACAAACT
* ***
26943818 -GAGGGTTTTTCAAAAATTTTACAAACT
1 AG-GGGTATTTCGGTAATTTTACAAACT
* *
26943845 AGAGGTATTTCAGTAATTTTACAAACT
1 AGGGGTATTTCGGTAATTTTACAAACT
* *
26943872 GGGGGTATTTCAGTAATTTTACAAA-T
1 AGGGGTATTTCGGTAATTTTACAAACT
*
26943898 CGGGAGTATTTCGGTAATTTTACAAACT
1 AGGG-GTATTTCGGTAATTTTACAAACT
26943926 AG
1 AG
26943928 AGATATGTTT
Statistics
Matches: 160, Mismatches: 26, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.04
27 150 0.94
28 3 0.02
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (27 bp):
AGGGGTATTTCGGTAATTTTACAAACT
Found at i:26944534 original size:43 final size:43
Alignment explanation
Indices: 26944459--26944587 Score: 149
Period size: 43 Copynumber: 3.0 Consensus size: 43
26944449 ATAGGATTTA
*
26944459 CGATATGTGATTGCATGTAAGACCATGTCTGGGACA-TCGGCAT
1 CGATATGTGATTACATGTAAGACCATGTCTGGGACAGT-GGCAT
* *
26944502 CGTATATGTGATT-CGTGTAAGACCCT-TCCTGGGACAGTGGCAT
1 CG-ATATGTGATTACATGTAAGACCATGT-CTGGGACAGTGGCAT
* *
26944545 CGATATGTGATTACATGTAAGACCACGTCTAGGAC-GTTGGCAT
1 CGATATGTGATTACATGTAAGACCATGTCTGGGACAG-TGGCAT
26944588 TGTACGATAT
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
42 12 0.16
43 50 0.68
44 12 0.16
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (43 bp):
CGATATGTGATTACATGTAAGACCATGTCTGGGACAGTGGCAT
Found at i:26951773 original size:14 final size:15
Alignment explanation
Indices: 26951745--26951773 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26951735 CTCTTTCAAG
26951745 GACAAGAATAATCCA
1 GACAAGAATAATCCA
26951760 GACAAGAA-AATCCA
1 GACAAGAATAATCCA
26951774 TATGAACTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.55, C:0.21, G:0.14, T:0.10
Consensus pattern (15 bp):
GACAAGAATAATCCA
Found at i:26952440 original size:15 final size:15
Alignment explanation
Indices: 26952400--26952437 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
26952390 GAAGCCCAGA
26952400 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
*
26952415 ATAAAGAAATCCATG
1 ATAAAGAAATCCAAG
26952430 AT-AAGAAA
1 ATAAAGAAA
26952438 ATCAAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
14 6 0.27
15 16 0.73
ACGTcount: A:0.61, C:0.11, G:0.13, T:0.16
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:26965123 original size:7 final size:7
Alignment explanation
Indices: 26965111--26965143 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
26965101 AACTTATAAC
26965111 CCTACCT
1 CCTACCT
26965118 CCTACCT
1 CCTACCT
26965125 CCTACCT
1 CCTACCT
26965132 CCTA-CT
1 CCTACCT
26965138 CCTACC
1 CCTACC
26965144 ATCCGTTATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.15, C:0.58, G:0.00, T:0.27
Consensus pattern (7 bp):
CCTACCT
Found at i:26972036 original size:29 final size:28
Alignment explanation
Indices: 26971999--26972071 Score: 92
Period size: 29 Copynumber: 2.6 Consensus size: 28
26971989 TGAATGTAAC
*
26971999 TGGGCCTAATGGGCCATATAAATGTGATT
1 TGGGCCTAATGGGCCATATAAATATGA-T
* *
26972028 TGGGCCTAATGGACCATATGAATATGAT
1 TGGGCCTAATGGGCCATATAAATATGAT
* *
26972056 TGGGCTTAAGGGGCCA
1 TGGGCCTAATGGGCCA
26972072 GATACAGGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
28 14 0.37
29 24 0.63
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.27
Consensus pattern (28 bp):
TGGGCCTAATGGGCCATATAAATATGAT
Found at i:26981261 original size:21 final size:21
Alignment explanation
Indices: 26981236--26981282 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
26981226 AATATAGACT
26981236 TATATTCTGAAATT-TAAAATA
1 TATATT-TGAAATTATAAAATA
* *
26981257 TATATTTTAAATTATAATATA
1 TATATTTGAAATTATAAAATA
26981278 TATAT
1 TATAT
26981283 AAATAAAGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 6 0.26
21 17 0.74
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (21 bp):
TATATTTGAAATTATAAAATA
Found at i:26982081 original size:103 final size:104
Alignment explanation
Indices: 26981974--26982166 Score: 352
Period size: 107 Copynumber: 1.8 Consensus size: 104
26981964 AATTATCATA
26981974 ATTTAAATATGTATTGAAAAATC-TTTATATATATATATTCTAATTTAAAATATATATTTTAAAA
1 ATTTAAATATGTATTGAAAAATCTTTTATATATATATATTCTAATTTAAAATATATATTTTAAAA
26982038 TTTCAAAATTCATAAATGTTACATTTAAACTAGTCTTAC
66 TTTCAAAATTCATAAATGTTACATTTAAACTAGTCTTAC
26982077 ATTTAAATATGTATTGAAAAATCTTTATTTATATATATATATTCTAATTTAAAATATATATTTTA
1 ATTTAAATATGTATTGAAAAATC--T-TTTATATATATATATTCTAATTTAAAATATATATTTTA
26982142 AAATTTCAAAATTCATAAATGTTAC
63 AAATTTCAAAATTCATAAATGTTAC
26982167 TGTAACGCCC
Statistics
Matches: 86, Mismatches: 0, Indels: 4
0.96 0.00 0.04
Matches are distributed among these distances:
103 23 0.27
107 63 0.73
ACGTcount: A:0.44, C:0.07, G:0.04, T:0.46
Consensus pattern (104 bp):
ATTTAAATATGTATTGAAAAATCTTTTATATATATATATTCTAATTTAAAATATATATTTTAAAA
TTTCAAAATTCATAAATGTTACATTTAAACTAGTCTTAC
Found at i:26982863 original size:27 final size:28
Alignment explanation
Indices: 26982821--26982914 Score: 104
Period size: 27 Copynumber: 3.5 Consensus size: 28
26982811 TGGATAAGTT
*
26982821 GTAG-AATTACCGAAATACCCCTGTAGG
1 GTAGAAATTACCAAAATACCCCTGTAGG
*
26982848 GTAGAAA-TACCAAAATACCCCTATAGG
1 GTAGAAATTACCAAAATACCCCTGTAGG
* * * *
26982875 GTA-AAATTACCGAGATACCCTTGTGGG
1 GTAGAAATTACCAAAATACCCCTGTAGG
*
26982902 GTAAAAATTACCA
1 GTAGAAATTACCA
26982915 TTTTGCCTCT
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
26 3 0.05
27 43 0.77
28 10 0.18
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.22
Consensus pattern (28 bp):
GTAGAAATTACCAAAATACCCCTGTAGG
Found at i:26985182 original size:55 final size:54
Alignment explanation
Indices: 26985027--26985233 Score: 218
Period size: 53 Copynumber: 3.8 Consensus size: 54
26985017 TTCCTTTTTA
* * * *
26985027 AACTTACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTACTTTAT-G
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* * * * * *
26985080 AACTCACCATTGCCACGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTATAG
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
** * * * * * *
26985134 TAGTTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
* *
26985189 AACTTACCAATGCCATGCCTTGGCATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTT
26985234 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 30, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
53 44 0.36
54 38 0.31
55 40 0.33
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (54 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATAG
Found at i:26996249 original size:37 final size:37
Alignment explanation
Indices: 26996193--26996271 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26996183 TTATTACGAA
** *
26996193 GTCTTACCCGGACGTAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
26996230 GTCTTACCCGGACAAAATCTCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
26996267 GTCTT
1 GTCTT
26996272 TAGAGCTCAG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:26996517 original size:49 final size:49
Alignment explanation
Indices: 26996390--26996753 Score: 573
Period size: 49 Copynumber: 7.6 Consensus size: 49
26996380 CCCTTCGGGA
* * * * *
26996390 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26996437 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26996484 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26996533 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26996582 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26996631 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26996680 CCTATTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26996728 CTTATCAC--ATATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
26996754 ATGGGTTTAA
Statistics
Matches: 299, Mismatches: 13, Indels: 10
0.93 0.04 0.03
Matches are distributed among these distances:
46 1 0.00
47 65 0.22
48 42 0.14
49 187 0.63
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:27007433 original size:27 final size:27
Alignment explanation
Indices: 27007409--27007485 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
27007399 AATACCCTGG
*
27007409 TTTGTAAAATTACTAAAATACCCCTTA
1 TTTGTAAAATTACTAAAATACCCCTAA
*
27007436 TTTGTAAAATTACCAAAATACCCCTAA
1 TTTGTAAAATTACTAAAATACCCCTAA
*
27007463 TTTGTGAAATTACTAAAATACCC
1 TTTGTAAAATTACTAAAATACCC
27007486 TCGACCTGTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.34
Consensus pattern (27 bp):
TTTGTAAAATTACTAAAATACCCCTAA
Found at i:27007496 original size:54 final size:53
Alignment explanation
Indices: 27007387--27007498 Score: 127
Period size: 54 Copynumber: 2.1 Consensus size: 53
27007377 TTTAGTTTAC
* * ** * **
27007387 TAAAATTATCGAAATACCCTGGTTTGTAAAATTACTAAAATACCCCTTATTTG
1 TAAAATTACCAAAATACCCTAATTTGTAAAATTACTAAAATACCCCTGACCTG
*
27007440 TAAAATTACCAAAATACCCCTAATTTGTGAAATTACTAAAATA-CCCTCGACCTG
1 TAAAATTACCAAAATA-CCCTAATTTGTAAAATTACTAAAATACCCCT-GACCTG
27007494 TAAAA
1 TAAAA
27007499 CTATTGAAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
53 18 0.37
54 31 0.63
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (53 bp):
TAAAATTACCAAAATACCCTAATTTGTAAAATTACTAAAATACCCCTGACCTG
Found at i:27007608 original size:27 final size:27
Alignment explanation
Indices: 27007578--27007717 Score: 158
Period size: 27 Copynumber: 5.2 Consensus size: 27
27007568 CAATTTACAA
27007578 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * * *
27007605 AATTACCG-AATACCCCTATAAGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
27007631 AATTACTAAAATACCCTTGTATGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* *
27007658 AAATACTGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAG
* * *
27007685 AATTACCGAGAA-ACCCTTGTGGGGTAA
1 AATTACTGA-AATACCCTTGTAGGGTAG
27007712 AATTAC
1 AATTAC
27007718 CATTTTGCCC
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.23
27 70 0.75
28 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCTTGTAGGGTAG
Found at i:27007701 original size:54 final size:53
Alignment explanation
Indices: 27007578--27007714 Score: 154
Period size: 53 Copynumber: 2.6 Consensus size: 53
27007568 CAATTTACAA
*
27007578 AATTACTG-AAATACCCTTGTAGGGTAGAATTACCGAATACCCCTATAAGGTAG
1 AATTAC-GAAAATACCCTTGTAGGGTAGAAATACCGAATACCCCTATAAGGTAG
* * * * *
27007631 AATTACTAAAATACCCTTGTATGGTAGAAATACTGAAATACCCCTGTAGGGTAG
1 AATTACGAAAATACCCTTGTAGGGTAGAAATACCG-AATACCCCTATAAGGTAG
* *
27007685 AATTACCGAGAA-ACCCTTGTGGGGTA-AAAT
1 AATTA-CGAAAATACCCTTGTAGGGTAGAAAT
27007715 TACCATTTTG
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
53 34 0.48
54 33 0.46
55 4 0.06
ACGTcount: A:0.36, C:0.18, G:0.20, T:0.26
Consensus pattern (53 bp):
AATTACGAAAATACCCTTGTAGGGTAGAAATACCGAATACCCCTATAAGGTAG
Found at i:27007991 original size:25 final size:25
Alignment explanation
Indices: 27007922--27007984 Score: 110
Period size: 25 Copynumber: 2.5 Consensus size: 25
27007912 AGGAAGTGCT
27007922 AAAAGGGCTTTGCCCCAGTTTACTG
1 AAAAGGGCTTTGCCCCAGTTTACTG
27007947 AAAAGGGCTTTGCCCCAGTTTA-TCG
1 AAAAGGGCTTTGCCCCAGTTTACT-G
27007972 AAAAGGGCTTTGC
1 AAAAGGGCTTTGC
27007985 TCTAGTTATT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
24 1 0.03
25 36 0.97
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTACTG
Found at i:27008015 original size:50 final size:50
Alignment explanation
Indices: 27007922--27008016 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
27007912 AGGAAGTGCT
**
27007922 AAAAGGGCTTTGCCCCAGTTTACTGAAAAGGGCTTTGCCCCAGTTTATCG
1 AAAAGGGCTTTGCCCCAGTTTACTGAAAAGGGCTAAGCCCCAGTTTATCG
* * *
27007972 AAAAGGGCTTTGCTCTAG-TTA-TTAAAAGAGGCTAAGCCTCCAGTT
1 AAAAGGGCTTTGCCCCAGTTTACTGAAAAG-GGCTAAGCC-CCAGTT
27008017 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 6 0.16
49 10 0.26
50 22 0.58
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.28
Consensus pattern (50 bp):
AAAAGGGCTTTGCCCCAGTTTACTGAAAAGGGCTAAGCCCCAGTTTATCG
Found at i:27014382 original size:61 final size:61
Alignment explanation
Indices: 27014287--27014411 Score: 223
Period size: 61 Copynumber: 2.0 Consensus size: 61
27014277 TTCTAGAAAT
* *
27014287 TTTATGGATGGAAGATATACGAGTCTATATTCAGGAAAAATTAACGGAAAGTGATTTGGAG
1 TTTATGGATGGAAGACATACGAGTCCATATTCAGGAAAAATTAACGGAAAGTGATTTGGAG
*
27014348 TTTATGGATGGAAGACATACGAGTCCATATTCAGGAAAAATTTACGGAAAGTGATTTGGAG
1 TTTATGGATGGAAGACATACGAGTCCATATTCAGGAAAAATTAACGGAAAGTGATTTGGAG
27014409 TTT
1 TTT
27014412 TGTAGCTCCA
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.36, C:0.08, G:0.26, T:0.30
Consensus pattern (61 bp):
TTTATGGATGGAAGACATACGAGTCCATATTCAGGAAAAATTAACGGAAAGTGATTTGGAG
Found at i:27014789 original size:48 final size:48
Alignment explanation
Indices: 27014688--27015628 Score: 1744
Period size: 48 Copynumber: 19.6 Consensus size: 48
27014678 TTAGGATTCT
* * * * *
27014688 ATGTGATGGATGTGAACA-TGCATATATGAG-ATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGAATAGGGCCTAATGGCCG
27014735 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27014783 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27014831 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27014879 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27014927 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27014975 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015023 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015071 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015119 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015167 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015215 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015263 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015311 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015359 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015407 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015455 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
27015503 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
* * * *
27015551 ATGTGATGAATGTGAAAGTGTATATATGTG-ACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
* * *
27015598 ACGTGATGGATGTGAAAGTGTATAAATGTGA
1 ATGTGATGAATGTGAAAGTGTATATATGTGA
27015629 TAAGTCCCGA
Statistics
Matches: 879, Mismatches: 12, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
46 1 0.00
47 65 0.07
48 813 0.92
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (48 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGAATAGGGCCTAATGGCCG
Found at i:27015807 original size:37 final size:37
Alignment explanation
Indices: 27015751--27015829 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
27015741 CCGAGCTCTA
* * *
27015751 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
27015788 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
27015825 AAGAC
1 AAGAC
27015830 TTCGTTATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:27024560 original size:40 final size:40
Alignment explanation
Indices: 27024505--27024655 Score: 146
Period size: 40 Copynumber: 3.8 Consensus size: 40
27024495 CGGAATTTAA
* * ** *
27024505 CCGGATATAGCAACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAAC
*
27024545 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * * *
27024585 CCGGATT-TAGTAACTCGCACCAATGCCTTTGGG-CTTAGC
1 CCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACATAAC
* * *
27024624 CTGG-AATTAGTATCTCGCACAAATGCCTTCGG
1 CCGGTTA-TAGTAACTCGCACAAATGCCTTCGG
27024656 ATCTTAGTCC
Statistics
Matches: 94, Mismatches: 14, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
39 30 0.32
40 62 0.66
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACATAAC
Found at i:27024649 original size:39 final size:40
Alignment explanation
Indices: 27024524--27024655 Score: 160
Period size: 40 Copynumber: 3.3 Consensus size: 40
27024514 GCAACTCGTT
* * *
27024524 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAAT-TAGTAACTCGCA
*
27024564 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
* * * * *
27024604 CCAATGCCTTTGGG-CTTAGCCTGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
27024643 CAAATGCCTTCGG
1 CAAATGCCTTCGG
27024656 ATCTTAGTCC
Statistics
Matches: 81, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 32 0.40
40 47 0.58
41 2 0.02
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGAATTAGTAACTCGCA
Found at i:27024692 original size:79 final size:80
Alignment explanation
Indices: 27024552--27024708 Score: 185
Period size: 79 Copynumber: 2.0 Consensus size: 80
27024542 AGCCCGGTTA
* * * *
27024552 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTTG-
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGA
*
27024616 GGCTTAGCCTGGAAT
66 GACTTAGCCTGGAAT
* ** * *
27024631 TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAAAGCCTTC
1 TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAGTAAC-TAGCACCAAAGCCTTC
27024694 GAGACTTAGCCTGGA
64 GAGACTTAGCCTGGA
27024709 CATCATTCGA
Statistics
Matches: 65, Mismatches: 10, Indels: 5
0.81 0.12 0.06
Matches are distributed among these distances:
78 3 0.05
79 46 0.71
80 16 0.25
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.27
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAGTAACTAGCACCAAAGCCTTCGA
GACTTAGCCTGGAAT
Found at i:27025902 original size:56 final size:56
Alignment explanation
Indices: 27025835--27025954 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
27025825 TATTAGTTTA
27025835 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
* *
27025891 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACAGAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
27025947 TTGCCCAT
1 TTGCCCAT
27025955 CATCCCTTGT
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.23, C:0.23, G:0.10, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:27026890 original size:30 final size:30
Alignment explanation
Indices: 27026856--27026916 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
27026846 TCCTTAACTC
27026856 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
27026886 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
27026916 A
1 A
27026917 GGCTCGGTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:27030561 original size:48 final size:48
Alignment explanation
Indices: 27030390--27030558 Score: 225
Period size: 48 Copynumber: 3.5 Consensus size: 48
27030380 AGATTCTATA
*
27030390 TAAGACCATGTCTGGGACATGGCATCAGCGATGATATATGTGCCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTG
* * *
27030438 TAAGACTATGTCTGGGACATGGCATCGGTGATGATATATGTGCCATTG
1 TAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTG
* * * * *
27030486 TAAGACCATGCCTAGGACATGGCATTGGCGATGATATGTG-GATTCA-TG
1 TAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTG--CCAGTG
27030534 TAAGACCATGTCTGGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
27030559 TGGTACTTTA
Statistics
Matches: 106, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
47 1 0.01
48 103 0.97
49 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
TAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCAGTG
Found at i:27031775 original size:19 final size:19
Alignment explanation
Indices: 27031751--27031801 Score: 102
Period size: 19 Copynumber: 2.7 Consensus size: 19
27031741 CAGCTTGGGG
27031751 ACACGGGCATGTCAAGGGC
1 ACACGGGCATGTCAAGGGC
27031770 ACACGGGCATGTCAAGGGC
1 ACACGGGCATGTCAAGGGC
27031789 ACACGGGCATGTC
1 ACACGGGCATGTC
27031802 TTTGTGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 32 1.00
ACGTcount: A:0.25, C:0.27, G:0.35, T:0.12
Consensus pattern (19 bp):
ACACGGGCATGTCAAGGGC
Found at i:27042282 original size:38 final size:38
Alignment explanation
Indices: 27042229--27042660 Score: 542
Period size: 38 Copynumber: 11.3 Consensus size: 38
27042219 ATATTCGATG
27042229 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
27042267 TTTATCCGGGTTAAATCCCGCAGGCTTCCTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
27042305 TATATTCGGGTTAAATCCTGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
27042343 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
27042381 TATATTCAGGTTAAATCTCGCAGGCTTCGTGCTGATAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
27042419 TATATTCGGGTTAAATCCTGCAGGCTTCGTGCTAGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
27042457 TATATCTGGGCTTAAAGACCCGCAGGCTTCGTGTTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* * *
27042497 AATATCTGGGTTAAATCCCGCAGGCTTCGTGATGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * *
27042535 TATATCCGGGCTTAAAGACCCACAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* *
27042575 AATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTGT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * * *
27042613 TATATCTGGGATAAATCTTC-CAGGCCTAGTGCTGGTAT
1 TATATCCGGGTTAAATC-CCGCAGGCTTCGTGCTGGTAT
*
27042651 TATATTCGGG
1 TATATCCGGG
27042661 CCTTCGTGCC
Statistics
Matches: 339, Mismatches: 50, Indels: 10
0.85 0.13 0.03
Matches are distributed among these distances:
38 263 0.78
39 21 0.06
40 55 0.16
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:27044567 original size:20 final size:21
Alignment explanation
Indices: 27044524--27044569 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
27044514 ACTGTTTTGT
27044524 TATGGG-CCAACTGTATTGAA
1 TATGGGCCCAACTGTATTGAA
*
27044544 -ATGGGCCCAACTGTGTT-AA
1 TATGGGCCCAACTGTATTGAA
27044563 TATGGGC
1 TATGGGC
27044570 AAGGCCCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 7 0.30
20 16 0.70
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (21 bp):
TATGGGCCCAACTGTATTGAA
Found at i:27045597 original size:48 final size:48
Alignment explanation
Indices: 27045367--27045594 Score: 298
Period size: 48 Copynumber: 4.8 Consensus size: 48
27045357 GGGTGGTACA
* *
27045367 ATGTGCCAGTGCAAGACCATGTATGGGACATGGCATCGGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * * *
27045415 ATGTGCCATTGTAAGACCATGTCTGGGACATGGCATCGACAATGTTAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
27045463 ATGTGCCAGTGTAAGACCATGTCTAGGACATGGCATCAGTGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* * *
27045511 ATGTGTCAATGTAAGACCATGTCTGGGACATGGCATTGGCGATGATAT
1 ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
* *
27045559 GTG-GATTCA-TGTAAGACCATGTCTGGGACATGGCAT
1 ATGTG--CCAGTGTAAGACCATGTCTGGGACATGGCAT
27045595 TGGTACTTTA
Statistics
Matches: 158, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.01
48 154 0.97
49 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (48 bp):
ATGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATAT
Found at i:27052491 original size:20 final size:20
Alignment explanation
Indices: 27052466--27052513 Score: 87
Period size: 20 Copynumber: 2.4 Consensus size: 20
27052456 ACAAATAGTT
27052466 ACACGGGCATGTCCCAAGCC
1 ACACGGGCATGTCCCAAGCC
*
27052486 ACACGGGCGTGTCCCAAGCC
1 ACACGGGCATGTCCCAAGCC
27052506 ACACGGGC
1 ACACGGGC
27052514 TTGTGAGACC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.23, C:0.40, G:0.29, T:0.08
Consensus pattern (20 bp):
ACACGGGCATGTCCCAAGCC
Found at i:27053709 original size:43 final size:43
Alignment explanation
Indices: 27053656--27053760 Score: 158
Period size: 43 Copynumber: 2.4 Consensus size: 43
27053646 GGACACATGG
27053656 CCTAACCACATGCCCGTGTTACCAGGCCATGTGTCACACACGA
1 CCTAACCACATGCCCGTGTTACCAGGCCATGTGTCACACACGA
* * *
27053699 CCTAACCACATGCCTGTGTTACCATGCCATGTGTCACACACGG
1 CCTAACCACATGCCCGTGTTACCAGGCCATGTGTCACACACGA
*
27053742 TCTAGA-CACATGCCCGTGT
1 CCTA-ACCACATGCCCGTGT
27053761 GTCTACCTGT
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
43 55 0.98
44 1 0.02
ACGTcount: A:0.24, C:0.35, G:0.19, T:0.22
Consensus pattern (43 bp):
CCTAACCACATGCCCGTGTTACCAGGCCATGTGTCACACACGA
Found at i:27054279 original size:14 final size:14
Alignment explanation
Indices: 27054260--27054287 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
27054250 CTTAGTAAGT
27054260 TTGTATAATAGAAA
1 TTGTATAATAGAAA
27054274 TTGTATAATAGAAA
1 TTGTATAATAGAAA
27054288 CTAAACCTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (14 bp):
TTGTATAATAGAAA
Found at i:27055338 original size:20 final size:20
Alignment explanation
Indices: 27055315--27055353 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
27055305 ATTTTTACAT
27055315 AAAATTTAAGAATTTTTCCC
1 AAAATTTAAGAATTTTTCCC
* *
27055335 AAAATTTTAGTATTTTTCC
1 AAAATTTAAGAATTTTTCC
27055354 TTTAATTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (20 bp):
AAAATTTAAGAATTTTTCCC
Found at i:27068375 original size:42 final size:42
Alignment explanation
Indices: 27068251--27068381 Score: 113
Period size: 42 Copynumber: 3.1 Consensus size: 42
27068241 TAAGATGCCA
* * * ** *
27068251 ATGCCATATCCCAGATATGGTCTTACATGGGATCACGTATCG
1 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCG
* ** *
27068293 ATGCCGATAG-CCTAG-CTATGGTCTTACACGATGTCTCATATCG
1 ATGCC-AT-GTCCCAGAC-ATGGTCTTACACGAAATCACATATCG
* *
27068336 ATGCCATGTCCCAGACATGGTCTTACACGAAAACACATATCA
1 ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCG
27068378 ATGC
1 ATGC
27068382 TAATGCCATA
Statistics
Matches: 69, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
41 1 0.01
42 36 0.52
43 32 0.46
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATCG
Found at i:27068418 original size:21 final size:21
Alignment explanation
Indices: 27068392--27068433 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
27068382 TAATGCCATA
*
27068392 TCCCAGATATGGTCCTACATG
1 TCCCAGACATGGTCCTACATG
*
27068413 TCCCAGACATGGTCTTACATG
1 TCCCAGACATGGTCCTACATG
27068434 GGATCACAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (21 bp):
TCCCAGACATGGTCCTACATG
Found at i:27071668 original size:46 final size:47
Alignment explanation
Indices: 27071519--27071740 Score: 192
Period size: 46 Copynumber: 4.8 Consensus size: 47
27071509 TCACTTGTGT
* * * * **
27071519 GAGCTAGTGTAAGACATGTATGGGGCATGCATCGGCCAC-A-TTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACAT-A
* * * *
27071565 GAGCCAGTGTAAGACCATATTTGGGACATGGCATTGACACT-GAGAC-TA
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGACATA
* *
27071613 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATA
27071660 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAG--AT-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACATA
* *
27071703 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
27071741 ACAGATATAG
Statistics
Matches: 145, Mismatches: 19, Indels: 23
0.78 0.10 0.12
Matches are distributed among these distances:
44 13 0.09
45 18 0.12
46 67 0.46
47 25 0.17
48 19 0.13
49 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACATA
Found at i:27071774 original size:50 final size:44
Alignment explanation
Indices: 27071524--27071792 Score: 179
Period size: 46 Copynumber: 5.8 Consensus size: 44
27071514 TGTGTGAGCT
* * * *
27071524 AGTGTAAGACATGTATGGGGCAT-GCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATCGG-CACGA-GATGTGA--C
* * * *
27071570 AGTGTAAGACCATATTTGGGACATGGCATTGACACTGAGACTAGTG-C
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCAC-GAGA-T-GTGAC
* ** *
27071617 TAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCGAGACATAAGCC
1 -AGTGTAAGACATGTCTGGGACATGGCATCGG-CACGAG--ATGTGAC
*
27071664 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTACGAGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGGC-ACGAGATGTGAC
*
27071708 AGTGTAAGACCATGTCTGGGACATGGCATCGGCACAGATATAGTAGAAC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCGGCAC-GAGAT-GT-G-AC
* *
27071757 TTGTGTAAGATCATGTCTAGGACATGGCATCGGCAC
1 -AGTGTAAGA-CATGTCTGGGACATGGCATCGGCAC
27071793 CTGACTCCAT
Statistics
Matches: 181, Mismatches: 23, Indels: 34
0.76 0.10 0.14
Matches are distributed among these distances:
44 13 0.07
45 17 0.09
46 64 0.35
47 33 0.18
48 17 0.09
49 3 0.02
50 34 0.19
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.23
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGGCACGAGATGTGAC
Found at i:27073828 original size:42 final size:42
Alignment explanation
Indices: 27073782--27073868 Score: 111
Period size: 42 Copynumber: 2.1 Consensus size: 42
27073772 GATCATAACT
*
27073782 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAAGCCATGGC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTAGCTAAAAGCCATGGC
* *** * *
27073824 TTTAGTGGCGTTTGTGGTTCAAGCGTAGCTAAAAGTCATGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGTAGCTAAAAGCCATGGC
27073866 TTT
1 TTT
27073869 TAGTGGCGCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.32
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGTAGCTAAAAGCCATGGC
Found at i:27073898 original size:43 final size:43
Alignment explanation
Indices: 27073851--27073941 Score: 164
Period size: 43 Copynumber: 2.1 Consensus size: 43
27073841 TTCAAGCGTA
27073851 GCTAAAAGTCATGTCTTTTAGTGGCGCTATTGTTACAAACGCC
1 GCTAAAAGTCATGTCTTTTAGTGGCGCTATTGTTACAAACGCC
* *
27073894 GCTAAAAGTCATGTCTTTTAGTTGCGCTTTTGTTACAAACGCC
1 GCTAAAAGTCATGTCTTTTAGTGGCGCTATTGTTACAAACGCC
27073937 GCTAA
1 GCTAA
27073942 TTTTGGCAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (43 bp):
GCTAAAAGTCATGTCTTTTAGTGGCGCTATTGTTACAAACGCC
Found at i:27074770 original size:13 final size:14
Alignment explanation
Indices: 27074744--27074775 Score: 57
Period size: 13 Copynumber: 2.4 Consensus size: 14
27074734 ACTAACGATG
27074744 AATTAAACCATTAT
1 AATTAAACCATTAT
27074758 AATTAAA-CATTAT
1 AATTAAACCATTAT
27074771 AATTA
1 AATTA
27074776 TTTATAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 11 0.61
14 7 0.39
ACGTcount: A:0.53, C:0.09, G:0.00, T:0.38
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:27079833 original size:9 final size:9
Alignment explanation
Indices: 27079819--27080013 Score: 89
Period size: 9 Copynumber: 21.7 Consensus size: 9
27079809 TAAGTATAAT
27079819 TAAGTTATG
1 TAAGTTATG
*
27079828 TAAGTTATAA
1 TAAGTTAT-G
* * *
27079838 TATGATATA
1 TAAGTTATG
*
27079847 T-ATTTATG
1 TAAGTTATG
27079855 T-A-TTATG
1 TAAGTTATG
27079862 TAAGTTATG
1 TAAGTTATG
*
27079871 TAAATTATG
1 TAAGTTATG
27079880 TAAGTTATG
1 TAAGTTATG
* * *
27079889 AAATTTTATCTT
1 TAA-GTTA--TG
**
27079901 TAAACTATG
1 TAAGTTATG
*
27079910 TAAGTTGTG
1 TAAGTTATG
27079919 T-A-TTATG
1 TAAGTTATG
27079926 TAAGTTATG
1 TAAGTTATG
* *
27079935 TAAATTATA
1 TAAGTTATG
27079944 TAAGTTATG
1 TAAGTTATG
* * *
27079953 AAATTTGATCTT
1 TAAGTT-A--TG
*
27079965 TAAATTATG
1 TAAGTTATG
27079974 TAAGTTATG
1 TAAGTTATG
27079983 T-A-TTATG
1 TAAGTTATG
*
27079990 TAAATTATG
1 TAAGTTATG
*
27079999 TAAATTATG
1 TAAGTTATG
*
27080008 TGAGTT
1 TAAGTT
27080014 GCTGGTGAAC
Statistics
Matches: 140, Mismatches: 33, Indels: 26
0.70 0.17 0.13
Matches are distributed among these distances:
7 17 0.12
8 10 0.07
9 92 0.66
10 10 0.07
11 3 0.02
12 8 0.06
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:27079910 original size:30 final size:30
Alignment explanation
Indices: 27079871--27079982 Score: 111
Period size: 30 Copynumber: 3.6 Consensus size: 30
27079861 GTAAGTTATG
27079871 TAAATTATGTAAGTTATGAAATTTTATCTT
1 TAAATTATGTAAGTTATGAAATTTTATCTT
* * *
27079901 TAAACTATGTAAGTTGTG-TATTATGTAAGT-TAT
1 TAAATTATGTAAGTTATGAAATT-T-T-A-TCT-T
* *
27079934 GTAAATTATATAAGTTATGAAATTTGATCTT
1 -TAAATTATGTAAGTTATGAAATTTTATCTT
27079965 TAAATTATGTAAGTTATG
1 TAAATTATGTAAGTTATG
27079983 TATTATGTAA
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
29 3 0.05
30 34 0.52
31 3 0.05
32 4 0.06
33 2 0.03
34 16 0.25
35 3 0.05
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (30 bp):
TAAATTATGTAAGTTATGAAATTTTATCTT
Found at i:27079928 original size:64 final size:64
Alignment explanation
Indices: 27079850--27080013 Score: 274
Period size: 64 Copynumber: 2.6 Consensus size: 64
27079840 TGATATATAT
*
27079850 TTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTTATCTTTAAACTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAACTATGTAAG
* * *
27079914 TTGTGTATTATGTAAGTTATGTAAATTATATAAGTTATGAAATTTGATCTTTAAATTATGTAAG
1 TTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAACTATGTAAG
* *
27079978 TTATGTATTATGTAAATTATGTAAATTATGTGAGTT
1 TTATGTATTATGTAAGTTATGTAAATTATGTAAGTT
27080014 GCTGGTGAAC
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 92 1.00
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (64 bp):
TTATGTATTATGTAAGTTATGTAAATTATGTAAGTTATGAAATTTGATCTTTAAACTATGTAAG
Found at i:27088250 original size:29 final size:29
Alignment explanation
Indices: 27088187--27088254 Score: 84
Period size: 29 Copynumber: 2.3 Consensus size: 29
27088177 TAATCAACCG
*
27088187 CGCACACTTAGTGCCATGTACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
27088216 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
27088245 CGCACACTTA
1 CGCACACTTA
27088255 CCTTTTTCCG
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
28 3 0.09
29 30 0.91
ACGTcount: A:0.28, C:0.29, G:0.13, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Done.