Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 83 of 186
Found at i:27088374 original size:175 final size:174
Alignment explanation
Indices: 27088076--27088404 Score: 622
Period size: 175 Copynumber: 1.9 Consensus size: 174
27088066 AACTCAAGGT
* *
27088076 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
27088141 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
27088206 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
27088250 ACTTACCTTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
1 ACTTACC-TTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTAT
27088315 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATG
65 AGAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATG
*
27088380 TACTTTAAACTCGCACACTTAGTGC
130 TACTTTAAACTCACACACTTAGTGC
27088405 TGTACAATTT
Statistics
Matches: 151, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
174 7 0.05
175 144 0.95
ACGTcount: A:0.31, C:0.24, G:0.15, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAGTGCTTAATAATCAACCGCGCACACTTAGTGCCATGT
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:27088396 original size:29 final size:30
Alignment explanation
Indices: 27088357--27088435 Score: 110
Period size: 29 Copynumber: 2.7 Consensus size: 30
27088347 CTTAATAATC
27088357 AACCGCGCACACTTAGTGCCATGTAC-TTTA
1 AACC-CGCACACTTAGTGCCATGTACATTTA
*
27088387 AACTCGCACACTTAGTG-C-TGTACAATTTA
1 AACCCGCACACTTAGTGCCATGTAC-ATTTA
27088416 AACCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
27088436 ATCTCATGAC
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
27 5 0.12
28 1 0.02
29 33 0.77
30 4 0.09
ACGTcount: A:0.29, C:0.30, G:0.15, T:0.25
Consensus pattern (30 bp):
AACCCGCACACTTAGTGCCATGTACATTTA
Found at i:27098865 original size:146 final size:146
Alignment explanation
Indices: 27098601--27098888 Score: 558
Period size: 146 Copynumber: 2.0 Consensus size: 146
27098591 ACCTTCGATG
*
27098601 GCATGACACAACCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAATGTATACTTAC
1 GCATGACACAACCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAAAGTATACTTAC
27098666 TTCTTTGTCGCGACACATGTCCTGATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
66 TTCTTTGTCGCGACACATGTCCTGATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
27098731 TAGGGGCGTTTTGGTT
131 TAGGGGCGTTTTGGTT
*
27098747 GCATGACACAGCCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAAAGTATACTTAC
1 GCATGACACAACCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAAAGTATACTTAC
27098812 TTCTTTGTCGCGACACATGTCCTGATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
66 TTCTTTGTCGCGACACATGTCCTGATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
27098877 TAGGGGCGTTTT
131 TAGGGGCGTTTT
27098889 AGTCCATATA
Statistics
Matches: 140, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
146 140 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (146 bp):
GCATGACACAACCTAAGTGTGTTGTGACATACCCTTGAAGACATCCCAAAGAAAAGTATACTTAC
TTCTTTGTCGCGACACATGTCCTGATGTGTCGTGACATCGACTCTAGATGGGAAATAATATGAGC
TAGGGGCGTTTTGGTT
Found at i:27116989 original size:79 final size:81
Alignment explanation
Indices: 27116853--27117035 Score: 225
Period size: 79 Copynumber: 2.3 Consensus size: 81
27116843 TCGAATGATG
* *
27116853 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
27116917 TGTGCGAGTTA-CTAA
66 TGTGCGAGTTACCTAA
* * * **
27116932 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
27116994 TTTGTGCGAGTTACTCTAA
64 TTTGTGCGAGTTAC-CTAA
*
27117013 -CCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
27117036 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 8, Indels: 10
0.83 0.07 0.09
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 29 0.32
81 4 0.04
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACCTAA
Found at i:27117044 original size:40 final size:41
Alignment explanation
Indices: 27116853--27117037 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
27116843 TCGAATGATG
* *
27116853 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-C-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTCTA-A
*
27116893 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTA--CTAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTCTAA
* *
27116932 TTCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACT-AAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA
*
27116972 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA
*
27117013 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
27117038 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 11, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
39 33 0.26
40 82 0.66
41 10 0.08
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTCTAA
Found at i:27117059 original size:79 final size:78
Alignment explanation
Indices: 27116906--27117070 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 78
27116896 GGACTAAGAT
**
27116906 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAA-TCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
27116971 ATCCGGGTTAAGTC
65 ATCCGGGTTAAATC
* *
27116985 CCGAAGGCATTTGTGCGAGTTACTCTAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTA--CTAATCCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* * *
27117048 TATATTC-GGTTAAATT
62 TAAATCCGGGTTAAATC
27117064 CCGAAGG
1 CCGAAGG
27117071 TACGTGATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
79 47 0.64
80 23 0.31
81 4 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGTTACTAATCCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAAA
TCCGGGTTAAATC
Found at i:27122621 original size:20 final size:20
Alignment explanation
Indices: 27122596--27122662 Score: 109
Period size: 20 Copynumber: 3.4 Consensus size: 20
27122586 GTTTTGATAT
27122596 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
27122616 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
27122636 ACATGGTATGTATGATATGC
1 ACATGATATGTATGATATGC
27122656 ACATGAT
1 ACATGAT
27122663 GTATTCATAA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.34, C:0.10, G:0.21, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:27122623 original size:11 final size:11
Alignment explanation
Indices: 27122607--27122662 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
27122597 CATGATTGAT
27122607 ATGATATGCAC
1 ATGATATGCAC
*
27122618 ATGATATG--T
1 ATGATATGCAC
27122627 ATGATATGCAC
1 ATGATATGCAC
* *
27122638 ATGGTATG--T
1 ATGATATGCAC
27122647 ATGATATGCAC
1 ATGATATGCAC
27122658 ATGAT
1 ATGAT
27122663 GTATTCATAA
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
9 15 0.43
11 20 0.57
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:27122764 original size:26 final size:25
Alignment explanation
Indices: 27122709--27122812 Score: 106
Period size: 25 Copynumber: 4.2 Consensus size: 25
27122699 GAGGAAGTGC
* * **
27122709 AAAAAGGGCTATGCCTCAGTTTACCG
1 AAAAAGGGCTTTGCCCCAGTTTA-TT
27122735 AAAAAGGGCTTTTGCCCCAGTTTATT
1 AAAAAGGGC-TTTGCCCCAGTTTATT
27122761 -AAAAGGGCTTTTGCCCCAGTTTA-T
1 AAAAAGGGC-TTTGCCCCAGTTTATT
* *
27122785 CAAAAGGGCTTTGCCCTAG-TTATT
1 AAAAAGGGCTTTGCCCCAGTTTATT
27122809 AAAA
1 AAAA
27122813 GAAACTAGGC
Statistics
Matches: 69, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
23 3 0.04
24 14 0.20
25 31 0.45
26 9 0.13
27 12 0.17
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
AAAAAGGGCTTTGCCCCAGTTTATT
Found at i:27123065 original size:31 final size:31
Alignment explanation
Indices: 27123027--27123090 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
27123017 CGTTTACAGT
27123027 AAAGGCTTCGACCCAGTAATATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
* * **
27123058 AAAGGCTTTGGCCCAGTGTTATGAAATATGA
1 AAAGGCTTCGACCCAGTAATATGAAATATGA
27123089 AA
1 AA
27123091 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGACCCAGTAATATGAAATATGA
Found at i:27132120 original size:17 final size:17
Alignment explanation
Indices: 27132078--27132122 Score: 55
Period size: 12 Copynumber: 2.9 Consensus size: 17
27132068 AGTGTAGCGC
27132078 ATACTCCTGCACAAGGG
1 ATACTCCTGCACAAGGG
27132095 ATA-----GCACAAGGG
1 ATACTCCTGCACAAGGG
27132107 ATACTCCTGCACAAGG
1 ATACTCCTGCACAAGG
27132123 AGAGGCTAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 10
0.70 0.00 0.30
Matches are distributed among these distances:
12 12 0.52
17 11 0.48
ACGTcount: A:0.33, C:0.27, G:0.24, T:0.16
Consensus pattern (17 bp):
ATACTCCTGCACAAGGG
Found at i:27134218 original size:18 final size:20
Alignment explanation
Indices: 27134191--27134232 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
27134181 TATAGACTCA
27134191 ATATAAAAC-TAAACAT-AT
1 ATATAAAACTTAAACATCAT
* *
27134209 ATATATAACTTAATCATCAT
1 ATATAAAACTTAAACATCAT
27134229 ATAT
1 ATAT
27134233 GCATGCAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 6 0.30
20 6 0.30
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (20 bp):
ATATAAAACTTAAACATCAT
Found at i:27135394 original size:21 final size:21
Alignment explanation
Indices: 27135361--27135411 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
27135351 GGCTTAAAAT
* *
27135361 TAATTTAGAAACAATTCGGGAC
1 TAATTT-GAAACAAATCGAGAC
*
27135383 TAATTTGAAACAAATCGAGAT
1 TAATTTGAAACAAATCGAGAC
27135404 TAATTTGA
1 TAATTTGA
27135412 GAAAAAGTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 20 0.77
22 6 0.23
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (21 bp):
TAATTTGAAACAAATCGAGAC
Found at i:27139169 original size:17 final size:17
Alignment explanation
Indices: 27139147--27139180 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
27139137 TGAGTTCTAG
27139147 TAGCTATA-AGTATCAAA
1 TAGCTATAGAGT-TCAAA
27139164 TAGCTATAGAGTTCAAA
1 TAGCTATAGAGTTCAAA
27139181 ATTTGAGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.81
18 3 0.19
ACGTcount: A:0.44, C:0.12, G:0.15, T:0.29
Consensus pattern (17 bp):
TAGCTATAGAGTTCAAA
Found at i:27140970 original size:17 final size:18
Alignment explanation
Indices: 27140932--27140970 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
27140922 AGTTTTGATG
27140932 TTTTGCTCTTCAATTCAT
1 TTTTGCTCTTCAATTCAT
*
27140950 TTTTGGCTCTTC-TTTCAT
1 TTTT-GCTCTTCAATTCAT
27140968 TTT
1 TTT
27140971 ACTTTCTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.10, C:0.21, G:0.08, T:0.62
Consensus pattern (18 bp):
TTTTGCTCTTCAATTCAT
Found at i:27143026 original size:14 final size:15
Alignment explanation
Indices: 27142997--27143026 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27142987 AAAAATTAAG
27142997 ACATGATACTTTCAC
1 ACATGATACTTTCAC
27143012 ACATGATAC-TTCAC
1 ACATGATACTTTCAC
27143026 A
1 A
27143027 TATAATAAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.27, G:0.07, T:0.30
Consensus pattern (15 bp):
ACATGATACTTTCAC
Found at i:27146303 original size:40 final size:40
Alignment explanation
Indices: 27146229--27146330 Score: 145
Period size: 40 Copynumber: 2.6 Consensus size: 40
27146219 AACCCAAGTA
* * *
27146229 CCTTTGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
*
27146268 CCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATG
27146308 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
27146331 CATTCGAATA
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
39 11 0.20
40 44 0.79
41 1 0.02
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATG
Found at i:27152253 original size:27 final size:27
Alignment explanation
Indices: 27152220--27152676 Score: 337
Period size: 27 Copynumber: 17.0 Consensus size: 27
27152210 ACCCCTGTAG
*
27152220 GGTAAAATGACAGTTTTGCCCTTATAT
1 GGTAAAATGACAGTTTTGCCCTTATGT
*
27152247 GGCAAAATGAC-GATTTTGCCCTTATGT
1 GGTAAAATGACAG-TTTTGCCCTTATGT
* * * *
27152274 GATAAATTGACAGTTTTTCCCTTATAT
1 GGTAAAATGACAGTTTTGCCCTTATGT
**
27152301 GGTAAAATGACTA-TTTTGCCCTTATAC
1 GGTAAAATGAC-AGTTTTGCCCTTATGT
* *
27152328 GTTAAATTGAC-GATTTTGCCCTTATGT
1 GGTAAAATGACAG-TTTTGCCCTTATGT
* * **
27152355 GGCAAAATGACTA-TTTTTCCCTTATAC
1 GGTAAAATGAC-AGTTTTGCCCTTATGT
* *
27152382 GTTAAATTGAC-GATTTTGCCCTTATGT
1 GGTAAAATGACAG-TTTTGCCCTTATGT
* * **
27152409 GGCAAAATGACTA-TTTTTCCCTTATAC
1 GGTAAAATGAC-AGTTTTGCCCTTATGT
* *
27152436 GTTAAATTGAC-GATTTTGCCCTTATGT
1 GGTAAAATGACAG-TTTTGCCCTTATGT
* * *
27152463 GGCAAAAT-A-ACTTTTGCCCTTATGC
1 GGTAAAATGACAGTTTTGCCCTTATGT
*
27152488 GTTAAAATGAC-GATTTTGCCCTTATGT
1 GGTAAAATGACAG-TTTTGCCCTTATGT
* * * *
27152515 GATAAATTGACAATTTTGCCCTTATAT
1 GGTAAAATGACAGTTTTGCCCTTATGT
* * *
27152542 GATAAAATGATAGTTTTTCCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
* *
27152569 GGCAAAATGACTA-TTTTGCCCTTATGC
1 GGTAAAATGAC-AGTTTTGCCCTTATGT
* *
27152596 GTTAAATTGACAGTTTT-CCCTTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
* * *
27152622 GATAAAATGA-TGATTTCGCCCTTATGT
1 GGTAAAATGACAG-TTTTGCCCTTATGT
* ** *
27152649 GGCAAAATGATTGTTTTGCCCCTATGT
1 GGTAAAATGACAGTTTTGCCCTTATGT
27152676 G
1 G
27152677 ATGTATGTTT
Statistics
Matches: 333, Mismatches: 74, Indels: 46
0.74 0.16 0.10
Matches are distributed among these distances:
25 20 0.06
26 23 0.07
27 285 0.86
28 5 0.02
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (27 bp):
GGTAAAATGACAGTTTTGCCCTTATGT
Found at i:27152289 original size:54 final size:54
Alignment explanation
Indices: 27152233--27152646 Score: 509
Period size: 54 Copynumber: 7.7 Consensus size: 54
27152223 AAAATGACAG
* * ** *
27152233 TTTTGCCCTTATATGGCAAAATGACGATTTTGCCCTTATGTGATAAATTGAC-A
1 TTTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTATACGTTAAATTGACGA
* * *
27152286 GTTTTTCCCTTATATGGTAAAATGACTATTTTGCCCTTATACGTTAAATTGACGA
1 -TTTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTATACGTTAAATTGACGA
*
27152341 TTTTGCCCTTATGTGGCAAAATGACTATTTTTCCCTTATACGTTAAATTGACGA
1 TTTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTATACGTTAAATTGACGA
*
27152395 TTTTGCCCTTATGTGGCAAAATGACTATTTTTCCCTTATACGTTAAATTGACGA
1 TTTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTATACGTTAAATTGACGA
* * *
27152449 TTTTGCCCTTATGTGGCAAAATAAC--TTTTGCCCTTATGCGTTAAAATGACGA
1 TTTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTATACGTTAAATTGACGA
** * * * * * *
27152501 TTTTGCCCTTATGTGATAAATTGACAATTTTGCCCTTATATGATAAAATGA-TA
1 TTTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTATACGTTAAATTGACGA
* *
27152554 GTTTTTCCCTTATGTGGCAAAATGACTATTTTGCCCTTATGCGTTAAATTGAC-A
1 -TTTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTATACGTTAAATTGACGA
** *
27152608 GTTTT-CCCTTATGTGATAAAATGA-TGATTTCGCCCTTAT
1 -TTTTGCCCTTATGTGGCAAAATGACT-ATTTTGCCCTTAT
27152647 GTGGCAAAAT
Statistics
Matches: 320, Mismatches: 34, Indels: 13
0.87 0.09 0.04
Matches are distributed among these distances:
52 46 0.14
53 30 0.09
54 243 0.76
55 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.40
Consensus pattern (54 bp):
TTTTGCCCTTATGTGGCAAAATGACTATTTTGCCCTTATACGTTAAATTGACGA
Found at i:27152318 original size:81 final size:81
Alignment explanation
Indices: 27152220--27152678 Score: 468
Period size: 81 Copynumber: 5.7 Consensus size: 81
27152210 ACCCCTGTAG
*
27152220 GGTAAAATGAC-AGTTTTGCCCTTATATGGCAAAATGACGATTTTGCCCTTATGTGATAAATTGA
1 GGTAAAATGACTA-TTTTGCCCTTATGTGGCAAAATGACGATTTTGCCCTTATGTGATAAATTGA
27152284 CAGTTTTTCCCTTATAT
65 CAGTTTTTCCCTTATAT
** ** * ** *
27152301 GGTAAAATGACTATTTTGCCCTTATACGTTAAATTGACGATTTTGCCCTTATGTGGCAAAATGAC
1 GGTAAAATGACTATTTTGCCCTTATGTGGCAAAATGACGATTTTGCCCTTATGTGATAAATTGAC
*
27152366 TA-TTTTTCCCTTATAC
66 -AGTTTTTCCCTTATAT
* * * * * ** *
27152382 GTTAAATTGACGATTTTGCCCTTATGTGGCAAAATGACTATTTTTCCCTTATACGTTAAATTGAC
1 GGTAAAATGACTATTTTGCCCTTATGTGGCAAAATGACGATTTTGCCCTTATGTGATAAATTGAC
* *
27152447 -GATTTTGCCCTTATGT
66 AG-TTTTTCCCTTATAT
* * * **
27152463 GGCAAAATAAC--TTTTGCCCTTATGCGTTAAAATGACGATTTTGCCCTTATGTGATAAATTGAC
1 GGTAAAATGACTATTTTGCCCTTATGTGGCAAAATGACGATTTTGCCCTTATGTGATAAATTGAC
* *
27152526 AATTTTGCCCTTATAT
66 AGTTTTTCCCTTATAT
* * * * *
27152542 GATAAAATGA-TAGTTTTTCCCTTATGTGGCAAAATGACTATTTTGCCCTTATGCGTTAAATTGA
1 GGTAAAATGACTA-TTTTGCCCTTATGTGGCAAAATGACGATTTTGCCCTTATGTGATAAATTGA
*
27152606 CAG-TTTTCCCTTATGT
65 CAGTTTTTCCCTTATAT
* * * *
27152622 GATAAAATGA-TGATTTCGCCCTTATGTGGCAAAATGATTG-TTTTGCCCCTATGTGAT
1 GGTAAAATGACT-ATTTTGCCCTTATGTGGCAAAATGA-CGATTTTGCCCTTATGTGAT
27152679 GTATGTTTAT
Statistics
Matches: 308, Mismatches: 60, Indels: 21
0.79 0.15 0.05
Matches are distributed among these distances:
79 64 0.21
80 58 0.19
81 184 0.60
82 2 0.01
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (81 bp):
GGTAAAATGACTATTTTGCCCTTATGTGGCAAAATGACGATTTTGCCCTTATGTGATAAATTGAC
AGTTTTTCCCTTATAT
Found at i:27157174 original size:24 final size:24
Alignment explanation
Indices: 27157142--27157229 Score: 108
Period size: 24 Copynumber: 3.7 Consensus size: 24
27157132 TCTTACTTAT
*
27157142 TCGCACACATAGTGCCACGTTTTC
1 TCGCACACATAGTGCCAAGTTTTC
* **
27157166 TCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCAAGTTTTC
27157190 TCGCACACATAGTGCCATTAGTTTT-
1 TCGCACACATAGTGCCA--AGTTTTC
27157215 T-GCACACATAGTGCC
1 TCGCACACATAGTGCC
27157230 GCATAACCTT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
24 52 0.93
25 1 0.02
26 3 0.05
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (24 bp):
TCGCACACATAGTGCCAAGTTTTC
Found at i:27157203 original size:48 final size:47
Alignment explanation
Indices: 27157142--27157252 Score: 134
Period size: 48 Copynumber: 2.3 Consensus size: 47
27157132 TCTTACTTAT
* ** *
27157142 TCGCACACATAGTGCCA-CGTTTTCTCGCACACATAGTGCCATGTAATC
1 TCGCACACATAGTGCCATAGTTTT-T-GCACACATAGTGCCACATAACC
*
27157190 TCGCACACATAGTGCCATTAGTTTTTGCACACATAGTGCCGCATAACC
1 TCGCACACATAGTGCCA-TAGTTTTTGCACACATAGTGCCACATAACC
*
27157238 TTGCACACATAGTGC
1 TCGCACACATAGTGC
27157253 TGAAATTTCT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
48 49 0.89
49 1 0.02
50 5 0.09
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (47 bp):
TCGCACACATAGTGCCATAGTTTTTGCACACATAGTGCCACATAACC
Found at i:27157244 original size:72 final size:73
Alignment explanation
Indices: 27157110--27157252 Score: 175
Period size: 72 Copynumber: 2.0 Consensus size: 73
27157100 GTGCTCGATT
* ***
27157110 TGTAAGTCCGCACACATAGTGCTCTTACTTATTCGCACACATAGTGCCACGTTTTCTCGCACACA
1 TGTAAGTCCGCACACATAGTGCTCTTACTTATTCGCACACATAGTGCCACATAACCTCGCACACA
27157175 TAGTGCCA
66 TAGTGCCA
* * * *
27157183 TGTAA-TCTCGCACACATAGTGC-CATTAGTT-TTTGCACACATAGTGCCGCATAACCTTGCACA
1 TGTAAGTC-CGCACACATAGTGCTC-TTACTTATTCGCACACATAGTGCCACATAACCTCGCACA
27157245 CATAGTGC
64 CATAGTGC
27157253 TGAAATTTCT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
72 36 0.60
73 24 0.40
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (73 bp):
TGTAAGTCCGCACACATAGTGCTCTTACTTATTCGCACACATAGTGCCACATAACCTCGCACACA
TAGTGCCA
Found at i:27157989 original size:20 final size:21
Alignment explanation
Indices: 27157954--27158002 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
27157944 CACTTATTTT
* * *
27157954 TTATTTCTTCTTTTATTCCTA
1 TTATTTATTTTTTTATTCATA
27157975 TT-TTTATTTTTTTATTCATA
1 TTATTTATTTTTTTATTCATA
27157995 TTATTTAT
1 TTATTTAT
27158003 GATATTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 17 0.71
21 7 0.29
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.71
Consensus pattern (21 bp):
TTATTTATTTTTTTATTCATA
Found at i:27175375 original size:28 final size:28
Alignment explanation
Indices: 27175309--27175364 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
27175299 CCTTCTTAAT
27175309 GCAAACTTTCTCCTCCAATGTTAGTAGG
1 GCAAACTTTCTCCTCCAATGTTAGTAGG
27175337 GCAAACTTTCTCCTCCAATGTTAGTAGG
1 GCAAACTTTCTCCTCCAATGTTAGTAGG
27175365 TTGTCTCTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (28 bp):
GCAAACTTTCTCCTCCAATGTTAGTAGG
Found at i:27184557 original size:24 final size:24
Alignment explanation
Indices: 27184523--27184580 Score: 91
Period size: 24 Copynumber: 2.5 Consensus size: 24
27184513 CCAATTAGGG
27184523 CACAAAGAACCTTTTCAGGAAGTT
1 CACAAAGAACCTTTTCAGGAAGTT
* *
27184547 CACAAAAAACCTTTTCGGGAAGTT
1 CACAAAGAACCTTTTCAGGAAGTT
27184571 CA-AAAGAACC
1 CACAAAGAACC
27184581 ATATCGGGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
23 7 0.23
24 24 0.77
ACGTcount: A:0.41, C:0.22, G:0.16, T:0.21
Consensus pattern (24 bp):
CACAAAGAACCTTTTCAGGAAGTT
Found at i:27184587 original size:23 final size:23
Alignment explanation
Indices: 27184526--27184620 Score: 73
Period size: 24 Copynumber: 4.0 Consensus size: 23
27184516 ATTAGGGCAC
* * *
27184526 AAAGAACCTTTTCAGGAAGTTCA
1 AAAGAACCATATCGGGAAGTTCA
* * *
27184549 CAAAAAACCTTTTCGGGAAGTTCA
1 -AAAGAACCATATCGGGAAGTTCA
* *
27184573 AAAGAACCATATCGGGAAGATCC
1 AAAGAACCATATCGGGAAGTTCA
* * *
27184596 AGATAGCCATTATCGGGAAGTTCA
1 AAAGAACCA-TATCGGGAAGTTCA
27184620 A
1 A
27184621 GTGAGCATTA
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
23 24 0.41
24 34 0.59
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (23 bp):
AAAGAACCATATCGGGAAGTTCA
Found at i:27184614 original size:24 final size:23
Alignment explanation
Indices: 27184582--27184638 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 23
27184572 AAAAGAACCA
*
27184582 TATCGGGAAGATCCAGAT-AGCCAT
1 TATCGGGAAGATCAAG-TGAG-CAT
*
27184606 TATCGGGAAGTTCAAGTGAGCAT
1 TATCGGGAAGATCAAGTGAGCAT
27184629 TATCGGGAAG
1 TATCGGGAAG
27184639 CTCATAAAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
23 14 0.47
24 16 0.53
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.23
Consensus pattern (23 bp):
TATCGGGAAGATCAAGTGAGCAT
Found at i:27184689 original size:25 final size:26
Alignment explanation
Indices: 27184632--27184682 Score: 77
Period size: 27 Copynumber: 2.0 Consensus size: 26
27184622 TGAGCATTAT
*
27184632 CGGGAAGCTCATAAAGAGCCAATTTAA
1 CGGGAAGCTCACAAAGAGCC-ATTTAA
27184659 CGGGAAGCTCACAAAGAGCC-TTTA
1 CGGGAAGCTCACAAAGAGCCATTTA
27184683 TTCGGAATGC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.17
27 19 0.83
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.18
Consensus pattern (26 bp):
CGGGAAGCTCACAAAGAGCCATTTAA
Found at i:27189180 original size:42 final size:42
Alignment explanation
Indices: 27189095--27189274 Score: 211
Period size: 42 Copynumber: 4.2 Consensus size: 42
27189085 TCCCAGACGT
* * * *
27189095 GGTCTTACATGTAATCAAATATCGATGCCATTGTCCCATATAG
1 GGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGATAG
27189138 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGATAG
1 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGATAG
* * * *
27189180 GGTCTTACATGAAATCAAATACGATGCCAATGTCCCAAACAT
1 GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGATAG
**
27189222 GGTCTTACACGTAAATCATAAGT-CGATGCCAACATCCCAGAT-G
1 GGTCTTACACG-AAATCA-AA-TACGATGCCAATGTCCCAGATAG
27189265 TGGTCTTACA
1 -GGTCTTACA
27189275 TGATAACACA
Statistics
Matches: 119, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
42 67 0.56
43 25 0.21
44 26 0.22
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.26
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATACGATGCCAATGTCCCAGATAG
Found at i:27190375 original size:13 final size:13
Alignment explanation
Indices: 27190357--27190381 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27190347 TTATCAAATT
27190357 AAATTTTCACACG
1 AAATTTTCACACG
27190370 AAATTTTCACAC
1 AAATTTTCACAC
27190382 ATACTAATTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:27195099 original size:48 final size:48
Alignment explanation
Indices: 27195028--27195999 Score: 1395
Period size: 48 Copynumber: 20.0 Consensus size: 48
27195018 CAAGATAAAT
* ** * *
27195028 ATATATATGTGTGGTAAAGCCGAATTTCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27195076 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * *
27195124 ATATGTATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * * *
27195172 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
27195220 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27195268 ATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
1 --ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27195318 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* ** * *
27195366 ATATGTATATGTGGTAAAGCCGAATGGCTAACATCAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27195414 ATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
1 --ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27195464 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* ** * *
27195512 ATATGTATATGTGGTAAAGCCGAATGGCTAACATCAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27195560 ATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
1 --ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27195610 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* ** * *
27195658 ATATGTATATGTGGTAAAGCCGAATGGCTAACATCAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27195706 ATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
1 --ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
** * *
27195756 ATATATATATGTGGTAAAGCCGAATGGCTAACATCAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
*
27195804 ATATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATATATGAG
1 --ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* ** *
27195854 ATATGTATATGTGGTAAAGCCGAATGGCTAACATGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
27195902 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* * * * *
27195950 ATATGTATATTTGGTAAAGTCGAATGGCTAATGTGAAATATGTAGGAG
1 ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
27195998 AT
1 AT
27196000 GTGTGTATAT
Statistics
Matches: 832, Mismatches: 82, Indels: 20
0.89 0.09 0.02
Matches are distributed among these distances:
48 616 0.74
50 216 0.26
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (48 bp):
ATATATATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:27196009 original size:146 final size:146
Alignment explanation
Indices: 27195028--27195999 Score: 1511
Period size: 146 Copynumber: 6.7 Consensus size: 146
27195018 CAAGATAAAT
* * ** *
27195028 ATATATATGTGTGGTAAAGCCGAATTTCTAGTGTGAAATATGTATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* * * *
27195093 AGCCGAATGGCTAATGTGAAATATATATGAG--ATATGTATATGTGGTAAAGCCGAATGGCTAGT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
*
27195156 GTGAAATATGTATGAG
131 GTGAAATATATATGAG
* * *
27195172 ATATGTATATGTGGTAAAGCCAAATGGCTAATATGAAATATGTATGAGATATATATATGTGGTAA
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
*
27195237 AGCCGAATGGCTAATGTGAAATATATATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
27195302 GTGAAATATATATGAG
131 GTGAAATATATATGAG
*
27195318 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
** *
27195383 AGCCGAATGGCTAACATCAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
27195448 GTGAAATATATATGAG
131 GTGAAATATATATGAG
*
27195464 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
** *
27195529 AGCCGAATGGCTAACATCAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
27195594 GTGAAATATATATGAG
131 GTGAAATATATATGAG
*
27195610 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATATATGAGATATGTATATGTGGTAA
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
** *
27195675 AGCCGAATGGCTAACATCAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
27195740 GTGAAATATATATGAG
131 GTGAAATATATATGAG
* ** * *
27195756 ATATATATATGTGGTAAAGCCGAATGGCTAACATCAAATATGTATGAGATATATATATATGTGGT
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAG--ATATGTATATGTGGT
* * * *
27195821 AAATCCGAATGGCTAATGTGAAATATATATGAG--ATATGTATATGTGGTAAAGCCGAATGGCTA
64 AAAGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTA
** *
27195884 ACATGAAATATGTATGAG
129 ATGTGAAATATATATGAG
* * *
27195902 ATATATATATGTGGTAAATCCGAATGGCTAATGTGAAATATGTATGAGATATGTATATTTGGTAA
1 ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
* *
27195967 AGTCGAATGGCTAATGTGAAATATGTAGGAGAT
66 AGCCGAATGGCTAATGTGAAATATGTATGAGAT
27196000 GTGTGTATAT
Statistics
Matches: 776, Mismatches: 46, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
144 130 0.17
146 604 0.78
148 42 0.05
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (146 bp):
ATATATATATGTGGTAAAGCCAAATGGCTAATGTGAAATATGTATGAGATATGTATATGTGGTAA
AGCCGAATGGCTAATGTGAAATATGTATGAGATATATATATATGTGGTAAATCCGAATGGCTAAT
GTGAAATATATATGAG
Found at i:27196184 original size:37 final size:37
Alignment explanation
Indices: 27196129--27196279 Score: 259
Period size: 37 Copynumber: 4.1 Consensus size: 37
27196119 ACATGAAACT
27196129 TGGAGATATAT-TCCGGGTAAGACCCGATGACTACGTG
1 TGGAGAT-TATGTCCGGGTAAGACCCGATGACTACGTG
*
27196166 TGGAGATTATGTCTGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
27196203 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
* *
27196240 TGGAGATTTTGTCCGGGTAAGACCCGATAACTACGTG
1 TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
27196277 TGG
1 TGG
27196280 GGACTATTCG
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
36 3 0.03
37 106 0.97
ACGTcount: A:0.25, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
TGGAGATTATGTCCGGGTAAGACCCGATGACTACGTG
Found at i:27200984 original size:40 final size:40
Alignment explanation
Indices: 27200890--27201034 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
27200880 TACTCGAATG
* *
27200890 ATATCCAGGCTAAGTCCCGAAGGCTTTTGTGCTATGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GCGACT
* *
27200931 ACATCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAGCGACT
* * * *
27200971 ATATCCGGGCTAAGTCCCGAAGGAATTTATGCTAGTGACC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
* *
27201011 ATATCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGTCCCGAAGGC
27201035 CTTGTGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 1 0.01
40 59 0.66
41 28 0.31
42 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGCGACT
Found at i:27217140 original size:43 final size:43
Alignment explanation
Indices: 27217079--27217199 Score: 190
Period size: 43 Copynumber: 2.8 Consensus size: 43
27217069 CTCCAATATG
* * *
27217079 TGATTTCGTGTAAGACCACGTTTGGGACGTTGGCATCGATAGT
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCCATAGT
27217122 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCCATAGT
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCCATAGT
* *
27217165 T-ATTACATGTAAGACCATGTCTGGGACGTTGGCAT
1 TGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
27217200 TGTACGAGCT
Statistics
Matches: 73, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
42 32 0.44
43 41 0.56
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (43 bp):
TGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCCATAGT
Found at i:27221956 original size:42 final size:43
Alignment explanation
Indices: 27221854--27222004 Score: 139
Period size: 43 Copynumber: 3.5 Consensus size: 43
27221844 TGTGTTATCG
* * * * * *
27221854 TGTAAGACCACGTCTGAGACATTGGCTTTGACT-TATGATTTACG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACA
* * ***
27221898 TGCAAGACCACATCTGGGACGTTGGCATC-ATATTTGATTTTG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
27221940 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
27221983 TGTAAGACCACGTCTGGGACGT
1 TGTAAGACCACGTCTGGGACGT
27222005 CAGCATTGTA
Statistics
Matches: 87, Mismatches: 14, Indels: 13
0.76 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.32
43 34 0.39
44 24 0.28
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:27222702 original size:16 final size:15
Alignment explanation
Indices: 27222677--27222712 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
27222667 TTTTCTTAAT
27222677 TTATTAATTATTATA
1 TTATTAATTATTATA
*
27222692 TTATATAATTATTATT
1 TTAT-TAATTATTATA
27222708 TTATT
1 TTATT
27222713 TAAATTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTATTAATTATTATA
Found at i:27227231 original size:23 final size:24
Alignment explanation
Indices: 27227187--27227231 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 24
27227177 TTATTAGAAG
* * *
27227187 TAATTATGAGTTTAGTTGAGTGCT
1 TAATTAGGAGTTTAATTAAGTGCT
27227211 TAATTAGGA-TTTAATTAAGTG
1 TAATTAGGAGTTTAATTAAGTG
27227232 AATTTAGCCT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
23 10 0.56
24 8 0.44
ACGTcount: A:0.31, C:0.02, G:0.22, T:0.44
Consensus pattern (24 bp):
TAATTAGGAGTTTAATTAAGTGCT
Found at i:27227421 original size:16 final size:15
Alignment explanation
Indices: 27227396--27227431 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
27227386 TTTTCTTAAT
27227396 TTATTAATTATTATA
1 TTATTAATTATTATA
*
27227411 TTATATAATTATTATT
1 TTAT-TAATTATTATA
27227427 TTATT
1 TTATT
27227432 TAAATTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTATTAATTATTATA
Found at i:27227858 original size:7 final size:7
Alignment explanation
Indices: 27227823--27227861 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
27227813 ACAGAGAAAG
27227823 GAAAGGA
1 GAAAGGA
*
27227830 GAAAAGA
1 GAAAGGA
*
27227837 AAAAGGA
1 GAAAGGA
*
27227844 AAAAGGA
1 GAAAGGA
27227851 GAAAGGA
1 GAAAGGA
27227858 GAAA
1 GAAA
27227862 CTAGGGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (7 bp):
GAAAGGA
Found at i:27229927 original size:20 final size:20
Alignment explanation
Indices: 27229902--27229947 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
27229892 AGACCTTACT
*
27229902 ATGTAAATAGCCCAATTTGA
1 ATGTAAATAGCCCAATTAGA
27229922 ATGTAAATAGCCCAATTAGA
1 ATGTAAATAGCCCAATTAGA
27229942 ATGTAA
1 ATGTAA
27229948 GTGGACATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.28
Consensus pattern (20 bp):
ATGTAAATAGCCCAATTAGA
Found at i:27230976 original size:22 final size:22
Alignment explanation
Indices: 27230918--27230985 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
27230908 AGACTCACCA
27230918 CAGCTCATATGAGCTTACCGTTT
1 CAGCTCAT-TGAGCTTACCGTTT
**
27230941 CAGCTCTACGGAGCTTACCG-TT
1 CAGCTC-ATTGAGCTTACCGTTT
*
27230963 CAGCTCAATTGAGCTTACTGTTT
1 CAGCTC-ATTGAGCTTACCGTTT
27230986 ATCGGCTCAG
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
22 18 0.49
23 18 0.49
24 1 0.03
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (22 bp):
CAGCTCATTGAGCTTACCGTTT
Found at i:27241314 original size:40 final size:40
Alignment explanation
Indices: 27241036--27241300 Score: 367
Period size: 40 Copynumber: 6.7 Consensus size: 40
27241026 TTGAATGATG
* * * * *
27241036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
27241076 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
27241116 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
27241155 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
27241195 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
27241235 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
27241276 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
27241301 AACGAGGAGC
Statistics
Matches: 207, Mismatches: 13, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
39 35 0.17
40 162 0.78
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27241318 original size:120 final size:118
Alignment explanation
Indices: 27241036--27241333 Score: 352
Period size: 119 Copynumber: 2.5 Consensus size: 118
27241026 TTGAATGATG
** * * * *
27241036 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCAT
*
27241099 TTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
63 TTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
* ** * *
27241155 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
27241220 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
* * *
27241276 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
27241334 TACGTGATTT
Statistics
Matches: 155, Mismatches: 18, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
118 1 0.01
119 83 0.54
120 69 0.45
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:27260958 original size:93 final size:93
Alignment explanation
Indices: 27260846--27261017 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
27260836 ACCCATAAGT
* *
27260846 GAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
27260911 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
27260939 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
27261004 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
27261018 CAAATATCCT
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:27261013 original size:46 final size:46
Alignment explanation
Indices: 27260838--27261013 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
27260828 TGTAACCCAC
* * *
27260838 CCATAAGTGAACTCGGACTCAACTCAACAAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
27260884 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
27260930 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
27260977 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
27261014 TGCCCAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:27280690 original size:40 final size:40
Alignment explanation
Indices: 27280604--27280693 Score: 126
Period size: 40 Copynumber: 2.2 Consensus size: 40
27280594 AGACTATGTT
*
27280604 TGGCACTAAGTGTGCGATTTGAAATAGCTTCGGCTATAAA
1 TGGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAA
* * * **
27280644 TAGCACTAAGTGTGCGAATTGGAATAGCTTTGGCTATATG
1 TGGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAA
27280684 TGGCACTAAG
1 TGGCACTAAG
27280694 CGTGTAATAT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (40 bp):
TGGCACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAA
Found at i:27287080 original size:27 final size:27
Alignment explanation
Indices: 27287050--27288296 Score: 1339
Period size: 27 Copynumber: 46.2 Consensus size: 27
27287040 AAAGTACTCC
* ** *
27287050 CGATTTACAGAATTTTCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
27287077 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
27287104 C-AGTTTACAGAATTACCGTTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
* *
27287131 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
**
27287158 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
*
27287185 CGATTCATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
27287212 CGATTTGTAAAATTACCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
**
27287239 C-AGTTTATAGAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
27287266 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * ***
27287293 CGATTTGTAAAATTATTATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
27287320 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * ***
27287347 CGATTTGTAAAATTATTATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
27287374 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * **
27287401 C-AGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
27287428 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * ***
27287455 CGATTTGTAAAATTATTATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
27287482 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * **
27287509 C-AGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
27287536 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * ***
27287563 CGATTTGTAAAATTATTATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
27287590 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * **
27287617 C-AGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
27287644 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * ***
27287671 CGATTTGTAAAATTATTATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
27287698 CGATTTACAGAATTACCATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * **
27287725 C-AGTTTACAAAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
*
27287752 CGATTTATAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * **
27287779 CGATTTGTAAAATTACAATTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
27287806 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* **
27287833 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
27287860 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
27287887 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
27287914 CGATTTGTAAAATTACAGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
27287941 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* **
27287968 C-AGTTTACAGAATTACTATTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
27287995 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
27288022 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
27288049 CGATTTACAAAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * * ** *
27288076 C-AGGTTACAAAATTACTATTTTACCTT
1 CGA-TTTATAGAATTACCGTTTTACCCT
*
27288103 CGATTTACAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* *
27288130 C-AGTTTACAGAATTACTGTTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
* *
27288157 CGATTTACAGAATTACTGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
27288184 CGATTTGTAAAATTATCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
* * * * *
27288211 TGATTTACAGAATTACTGGTTTACCTT
1 CGATTTATAGAATTACCGTTTTACCCT
* * *
27288238 C-AGTTTACAAAATTATCGTTTTACCCT
1 CGA-TTTATAGAATTACCGTTTTACCCT
27288265 CGATTTATAGAATTACCGTTTTACCCT
1 CGATTTATAGAATTACCGTTTTACCCT
*
27288292 TGATT
1 CGATT
27288297 GTGAAATTAC
Statistics
Matches: 1038, Mismatches: 158, Indels: 48
0.83 0.13 0.04
Matches are distributed among these distances:
26 12 0.01
27 1014 0.98
28 12 0.01
ACGTcount: A:0.28, C:0.21, G:0.09, T:0.41
Consensus pattern (27 bp):
CGATTTATAGAATTACCGTTTTACCCT
Found at i:27288369 original size:54 final size:54
Alignment explanation
Indices: 27288301--27288496 Score: 268
Period size: 54 Copynumber: 3.6 Consensus size: 54
27288291 TTGATTGTGA
* * * * *
27288301 AATTACTGAAATACCCCTGTATGGTAGAATTTCTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
27288355 AATTACTGAAATACCCTTGTAGGGTAGAATTACCAAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
*
27288409 AATTA-TCGAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
* * * * *
27288463 AATTACCGAGATACCTTTGTGGGGTAAAATTACC
1 AATTACTGAAATACCCTTGTAGGGTAGAATTACC
27288497 ATTTTGCCCC
Statistics
Matches: 126, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
53 1 0.01
54 125 0.99
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (54 bp):
AATTACTGAAATACCCTTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAG
Found at i:27288487 original size:27 final size:27
Alignment explanation
Indices: 27288301--27288496 Score: 239
Period size: 27 Copynumber: 7.3 Consensus size: 27
27288291 TTGATTGTGA
* * *
27288301 AATTACTGAAATACCCCTGTATGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
27288328 AATTTCTGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
27288355 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
27288382 AATTACCAAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
*
27288409 AATTATCGAAATACCCTTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* *
27288436 AAATACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCTTGTAGGGTAG
* * * *
27288463 AATTACCGAGATACCTTTGTGGGGTAA
1 AATTACCGAAATACCCTTGTAGGGTAG
27288490 AATTACC
1 AATTACC
27288497 ATTTTGCCCC
Statistics
Matches: 148, Mismatches: 21, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 148 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCTTGTAGGGTAG
Found at i:27288756 original size:27 final size:26
Alignment explanation
Indices: 27288695--27288777 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
27288685 CGGAGGAAGC
* *
27288695 GTTCTGGTGGCTATGCCACAAATATTT
1 GTTCTGGTGGCTCTGCCAC-AATATCT
27288722 GTTCTGGTGGCTCTGCCACAATATCT
1 GTTCTGGTGGCTCTGCCACAATATCT
* * *
27288748 GTATTTGGTGACTCTGTCACAATATCT
1 GT-TCTGGTGGCTCTGCCACAATATCT
27288775 GTT
1 GTT
27288778 GACCGATCGA
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 9 0.18
27 41 0.82
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.39
Consensus pattern (26 bp):
GTTCTGGTGGCTCTGCCACAATATCT
Found at i:27288897 original size:22 final size:22
Alignment explanation
Indices: 27288865--27288923 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
27288855 CCCGTTATTA
*
27288865 ATGGCTCTGTGCCAACCTAAAT
1 ATGGCTTTGTGCCAACCTAAAT
* * * *
27288887 ATGGCTTTGTGCCATCTTGACT
1 ATGGCTTTGTGCCAACCTAAAT
*
27288909 ATGGCTTCGTGCCAA
1 ATGGCTTTGTGCCAA
27288924 ACGTATTTAC
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.20, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
ATGGCTTTGTGCCAACCTAAAT
Found at i:27289110 original size:27 final size:27
Alignment explanation
Indices: 27289088--27289161 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 27
27289078 TAGGTGGGTT
*
27289088 TGCCACATTATCTG-ATTCTGGTGGCTC
1 TGCCACAATATCTGTA-TCTGGTGGCTC
* *
27289115 TGCCATAATATCTGTATCTGGTGACTC
1 TGCCACAATATCTGTATCTGGTGGCTC
* *
27289142 TGTCACGATATCTGT-TCTGG
1 TGCCACAATATCTGTATCTGG
27289162 CAGCCATGCT
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.12
27 34 0.85
28 1 0.03
ACGTcount: A:0.18, C:0.23, G:0.22, T:0.38
Consensus pattern (27 bp):
TGCCACAATATCTGTATCTGGTGGCTC
Found at i:27289313 original size:6 final size:6
Alignment explanation
Indices: 27289304--27289350 Score: 78
Period size: 6 Copynumber: 7.8 Consensus size: 6
27289294 CTGTCACGTA
27289304 ATTCTG ATTCTG ATTCTG ATTCTG -TTACTG ATTCTG ATTCTG ATTCT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATT-CTG ATTCTG ATTCTG ATTCT
27289351 CATTTTGGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
5 2 0.05
6 35 0.90
7 2 0.05
ACGTcount: A:0.17, C:0.17, G:0.15, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:27292022 original size:44 final size:41
Alignment explanation
Indices: 27291880--27292061 Score: 140
Period size: 40 Copynumber: 4.4 Consensus size: 41
27291870 ACTATGTTCA
* * * ** *
27291880 GCACTAAGTGTGTGAT-TTGAAATAGCTTTGGCTATAAATA
1 GCACTAAGTGTGCGATATTGGAATAGCTTCGGCTATATGTG
27291920 GCACTAAGTGTGCGA-ATTGGAATAGCTTCGGCTATATGTG
1 GCACTAAGTGTGCGATATTGGAATAGCTTCGGCTATATGTG
* * * * *
27291960 GCACTAGGTGTACAATATT-GAGATAGTTTCGGTTTAATATGATG
1 GCACTAAGTGTGCGATATTGGA-ATAGCTTCGG-CT-ATATG-TG
**
27292004 GCACTAAGTGTGCGATATT-TTATAGCTTCGGCTAGATTAT-TG
1 GCACTAAGTGTGCGATATTGGAATAGCTTCGGCT--A-TATGTG
*
27292046 GAACTAAGTGTGCGAT
1 GCACTAAGTGTGCGAT
27292062 GTTCTTGTAC
Statistics
Matches: 114, Mismatches: 20, Indels: 14
0.77 0.14 0.09
Matches are distributed among these distances:
40 47 0.41
41 12 0.11
42 19 0.17
43 15 0.13
44 21 0.18
ACGTcount: A:0.28, C:0.12, G:0.26, T:0.34
Consensus pattern (41 bp):
GCACTAAGTGTGCGATATTGGAATAGCTTCGGCTATATGTG
Found at i:27298256 original size:40 final size:40
Alignment explanation
Indices: 27298201--27298412 Score: 329
Period size: 40 Copynumber: 5.3 Consensus size: 40
27298191 TATTCGAATG
*
27298201 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
27298241 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
27298281 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* *
27298321 ATATCCGGGCTAAGTCCTGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
* * *
27298361 ATATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGACT
27298401 ATATCC-GGCTAA
1 ATATCCGGGCTAA
27298413 ACTCGAAGGT
Statistics
Matches: 159, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 6 0.04
40 150 0.94
41 3 0.02
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.30
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGACT
Found at i:27311951 original size:46 final size:46
Alignment explanation
Indices: 27311901--27312073 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
27311891 TGGTTGAGCA
27311901 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
27311947 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
27311992 CATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
27312040 TCTGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
27312074 GGGGCGAGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:27312057 original size:93 final size:93
Alignment explanation
Indices: 27311898--27312068 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
27311888 GGATGGTTGA
*
27311898 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
27311963 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
27311991 GCATCCGAACTCGTTGAGTTGATTCCGAGTTCACTTATGGATGCGAACGTCTGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
27312056 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
27312069 ACTTAGGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.21, C:0.20, G:0.29, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:27314099 original size:16 final size:16
Alignment explanation
Indices: 27314080--27314110 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27314070 ATTGTTTTAT
27314080 TACAGAATTTCACTTC
1 TACAGAATTTCACTTC
*
27314096 TACATAATTTCACTT
1 TACAGAATTTCACTT
27314111 ACTCCATTCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.23, G:0.03, T:0.42
Consensus pattern (16 bp):
TACAGAATTTCACTTC
Found at i:27314348 original size:26 final size:26
Alignment explanation
Indices: 27314316--27314397 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
27314306 AGCTCTCTGG
27314316 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* *
27314342 TACACAT-G-CGACCTATCAAGC-TAGTA-
1 TACACATAGTAG-CCT-GC-A-CTTAGTAC
27314368 T--ACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
27314392 TACACA
1 TACACA
27314398 CGTGACTTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 20
0.64 0.06 0.30
Matches are distributed among these distances:
22 1 0.02
23 6 0.14
24 7 0.17
25 8 0.19
26 13 0.31
27 6 0.14
28 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.26
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:27314373 original size:50 final size:50
Alignment explanation
Indices: 27314311--27314550 Score: 248
Period size: 50 Copynumber: 4.8 Consensus size: 50
27314301 ACCGAAGCTC
*
27314311 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
* * * * * * *
27314361 GCTAGTATACATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
* * ** * ** *
27314411 TCTGATAAATGTAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCTA-TCAA
* * * *
27314463 T-GGGTACGCATAGTAGCCTGCATTTAGTACTACACATGCGACCTATCAA
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
* * *
27314512 TCTGGTACACGTAGTAGCTTGCACTTCGTACTACACACG
1 TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACG
27314551 TGACTCACAA
Statistics
Matches: 149, Mismatches: 38, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
49 4 0.03
50 110 0.74
51 33 0.22
52 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (50 bp):
TCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCTATCAA
Found at i:27314497 original size:101 final size:101
Alignment explanation
Indices: 27314370--27314553 Score: 269
Period size: 101 Copynumber: 1.8 Consensus size: 101
27314360 AGCTAGTATA
* * * *
27314370 CATAGTAGCCTGCACTTAGTACTACACACGTGACTTAACCATCTGATAAATGTAGTAGCCTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATAAACGTAGTAGCCTGCAC
27314435 TTAGTACTACACACGTGATCGAAGTTAATGGGTACG
66 TTAGTACTACACACGTGATCGAAGTTAATGGGTACG
* * * * * *
27314471 CATAGTAGCCTGCATTTAGTACTACACATGCGACCTATCAATCTGGTACACGTAGTAGCTTGCAC
1 CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATAAACGTAGTAGCCTGCAC
*
27314536 TTCGTACTACACACGTGA
66 TTAGTACTACACACGTGA
27314554 CTCACAACGG
Statistics
Matches: 72, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
101 72 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.27
Consensus pattern (101 bp):
CATAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATAAACGTAGTAGCCTGCAC
TTAGTACTACACACGTGATCGAAGTTAATGGGTACG
Found at i:27324979 original size:17 final size:17
Alignment explanation
Indices: 27324957--27325011 Score: 53
Period size: 17 Copynumber: 3.3 Consensus size: 17
27324947 TTAATGTATC
27324957 AATATTTAAATTATTTA
1 AATATTTAAATTATTTA
* *
27324974 AATATTTCATTTATCATT-
1 AATATTTAAATTAT--TTA
27324992 -ATA-TTAAATTATTTA
1 AATATTTAAATTATTTA
27325007 AATAT
1 AATAT
27325012 CATTTATCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 10
0.67 0.09 0.23
Matches are distributed among these distances:
14 2 0.07
16 10 0.34
17 15 0.52
19 2 0.07
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (17 bp):
AATATTTAAATTATTTA
Found at i:27325004 original size:33 final size:32
Alignment explanation
Indices: 27324953--27325056 Score: 153
Period size: 31 Copynumber: 3.3 Consensus size: 32
27324943 ATATTTAATG
*
27324953 TATCAATAT-TTAAATTATTTAAATATTTCATT
1 TATCATTATATTAAATTATTTAAATA-TTCATT
27324985 TATCATTATATTAAATTATTTAAATA-TCATT
1 TATCATTATATTAAATTATTTAAATATTCATT
27325016 TATCATTATATTAAATT-TTTAAATATT-ATT
1 TATCATTATATTAAATTATTTAAATATTCATT
*
27325046 TATTATTATAT
1 TATCATTATAT
27325057 ATATTTAAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
30 21 0.31
31 23 0.34
32 8 0.12
33 16 0.24
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (32 bp):
TATCATTATATTAAATTATTTAAATATTCATT
Found at i:27325018 original size:31 final size:31
Alignment explanation
Indices: 27324953--27325056 Score: 149
Period size: 30 Copynumber: 3.4 Consensus size: 31
27324943 ATATTTAATG
*
27324953 TATCAATAT-TTAAATTATTTAAATATTTCATT
1 TATCATTATATTAAATTATTTAAATA--TCATT
27324985 TATCATTATATTAAATTATTTAAATATCATT
1 TATCATTATATTAAATTATTTAAATATCATT
*
27325016 TATCATTATATTAAATT-TTTAAATATTATT
1 TATCATTATATTAAATTATTTAAATATCATT
*
27325046 TATTATTATAT
1 TATCATTATAT
27325057 ATATTTAAAA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
30 22 0.32
31 22 0.32
32 8 0.12
33 16 0.24
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (31 bp):
TATCATTATATTAAATTATTTAAATATCATT
Found at i:27325120 original size:27 final size:29
Alignment explanation
Indices: 27325061--27325120 Score: 83
Period size: 27 Copynumber: 2.2 Consensus size: 29
27325051 TTATATATAT
*
27325061 TTAAAATAATTTATATATCATTAATTTAA
1 TTAAAATAATTTATATATAATTAATTTAA
27325090 --AAAATAATTTATAT-TAATTAA-TTAA
1 TTAAAATAATTTATATATAATTAATTTAA
27325115 TTAAAA
1 TTAAAA
27325121 ATATTTAAAG
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
25 4 0.14
26 6 0.21
27 18 0.64
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (29 bp):
TTAAAATAATTTATATATAATTAATTTAA
Found at i:27326505 original size:3 final size:3
Alignment explanation
Indices: 27326497--27326527 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
27326487 TTGTATTTCC
27326497 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
27326528 TTTCTTTTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (3 bp):
GAT
Found at i:27326743 original size:9 final size:9
Alignment explanation
Indices: 27326711--27326761 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
27326701 ATAAATATTT
27326711 AAAAAAATA
1 AAAAAAATA
* *
27326720 ATGAAAAATT
1 A-AAAAAATA
*
27326730 CAAAAAATA
1 AAAAAAATA
27326739 AAAAAAATA
1 AAAAAAATA
27326748 AAAAAAATA
1 AAAAAAATA
27326757 TAAAA
1 -AAAA
27326762 TTTGATGTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
9 24 0.71
10 10 0.29
ACGTcount: A:0.80, C:0.02, G:0.02, T:0.16
Consensus pattern (9 bp):
AAAAAAATA
Found at i:27327477 original size:21 final size:21
Alignment explanation
Indices: 27327436--27327481 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
27327426 GTTGAACCAA
27327436 ATTTTATACTTTTTAATATTTT
1 ATTTTATACTTTTTAATA-TTT
27327458 ATTTT-TA-TTTTTAATAATTT
1 ATTTTATACTTTTTAAT-ATTT
27327478 ATTT
1 ATTT
27327482 GCATTGAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 15 0.65
21 3 0.13
22 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.00, T:0.70
Consensus pattern (21 bp):
ATTTTATACTTTTTAATATTT
Found at i:27333827 original size:26 final size:26
Alignment explanation
Indices: 27333798--27333850 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27333788 TTTACAGTTT
27333798 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
27333824 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
27333850 T
1 T
27333851 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:27334740 original size:26 final size:26
Alignment explanation
Indices: 27334711--27334763 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27334701 TTTACAATTT
27334711 TACCCCTAGGAGATAAATT-ACCAAAA
1 TACCCCTAGG-GATAAATTGACCAAAA
* *
27334737 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCAAAA
27334763 T
1 T
27334764 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.40, C:0.23, G:0.13, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCAAAA
Found at i:27334937 original size:913 final size:913
Alignment explanation
Indices: 27333170--27335781 Score: 5028
Period size: 913 Copynumber: 2.9 Consensus size: 913
27333160 NNNNNNNNNN
* *
27333170 ACTTGATTTGGAGTTTCGTAGCTCCAGTTATAAATAATTTAGTGACTATTGGTCAGGAAGATAGC
1 ACTTGATTTGGAGTTTCGTAGCTCCAGTTATAAATAATTTAGTGACTATTGCTCAGGAAGACAGC
* * *
27333235 TTGTAGTGAAATTATGATTATGTGGTAAACATTGACAAAAATTTGTTAATGAGTTGCTTATTGTT
66 TTGCAGTGAAATTATGATTATGTGGTAAACATTGACAAAAATTTATTAATGAGTTGCTTATTGAT
27333300 TTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGCCAAATATTGTAAGGGGTTAATACGTAG
131 TTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGCCAAATATTGTAAGGGGTTAATACGTAG
27333365 TTTGTATTTGAATAGTTAGATTAACGTGTTAGTAATCCAATTGTAGGCAGTTCATGTGTGAATCT
196 TTTGTATTTGAATAGTTAGATTAACGTGTTAGTAATCCAATTGTAGGCAGTTCATGTGTGAATCT
27333430 TGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTCTTTCTTAGTCTGGATCGGCAAAA
261 TGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTCTTTCTTAGTCTGGATCGGCAAAA
*
27333495 GCCGAAAATCCGAAATGCCGAAAACCGGTATTTTGTAGATTTGTGAGTGTGCGAATGCTCGTGAG
326 GCCGAAAATCCGAAATGCCGAAAACCGGTATTTTGTAGATTTGCGAGTGTGCGAATGCTCGTGAG
*
27333560 GAAAATCGATTAATGTTTTTGGTAAGCTGCAATGTTTGGACTGCAAAGTGCATGATTTCTGTGCC
391 GTAAATCGATTAATGTTTTTGGTAAGCTGCAATGTTTGGACTGCAAAGTGCATGATTTCTGTGCC
27333625 CTCGATATTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGCCAACGGGCCCAATTCGGTAAG
456 CTCGATATTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGCCAACGGGCCCAATTCGGTAAG
*
27333690 AACCGTCGGTAGTGATTCTGTTAGTACGTGAAAGGTAGGAATATGCATGAGAAACCCTAAAATAG
521 AACCGTCGGTAGTGATTCTGTTAGTACGTGAAAGGTAGGAATATGCATGAAAAACCCTAAAATAG
27333755 ATAAATTACTGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGGAGATAAATTACC
586 ATAAATTACTGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGGAGATAAATTACC
27333820 GAAATACCCCTAGGGTTAAATTGACCTAAATGCATGTTTGACTGTTGTTATTTACTGCATGCCAT
651 GAAATACCCCTAGGGTTAAATTGACCTAAATGCATGTTTGACTGTTGTTATTTACTGCATGCCAT
27333885 GTTTTTATTATCTGATGCATGGGACTGGGATATTGACGTAGGAAGTACTGAAAGTGGCTTGTCCA
716 GTTTTTATTATCTGATGCATGGGACTGGGATATTGACGTAGGAAGTACTGAAAGTGGCTTGTCCA
27333950 CGTACTCAAATTAGTCAAATAGTGAAACATGGGAAACTTTGAGAAAAATCTGGTATTGATTGGCT
781 CGTACTCAAATTAGTCAAATAGTGAAACATGGGAAACTTTGAGAAAAATCTGGTATTGATTGGCT
27334015 AAATCAAAAATTCTGAAAATTTTATGGATAGAAGATATATGAGTCTATTTTCAGGAAAAATTAAC
846 AAATCAAAAATTCTGAAAATTTTATGGATAGAAGATATATGAGTCTATTTTCAGGAAAAATTAAC
27334080 GGA
911 GGA
*
27334083 ACTTGATTTGGAGTTTCGTAGCTCCAGTTATAAATAATTTAGTGACTGTTGCTCAGGAAGACAGC
1 ACTTGATTTGGAGTTTCGTAGCTCCAGTTATAAATAATTTAGTGACTATTGCTCAGGAAGACAGC
27334148 TTGCAGTGAAATTATGATTATGTGGTAAACATTGACAAAAATTTATTAATGAGTTGCTTATTGAT
66 TTGCAGTGAAATTATGATTATGTGGTAAACATTGACAAAAATTTATTAATGAGTTGCTTATTGAT
27334213 TTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGCCAAATATTGTAAGGGGTTAATACGTAG
131 TTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGCCAAATATTGTAAGGGGTTAATACGTAG
27334278 TTTGTATTTGAATAGTTAGATTAACGTGTTAGTAATCCAATTGTAGGCAGTTCATGTGTGAATCT
196 TTTGTATTTGAATAGTTAGATTAACGTGTTAGTAATCCAATTGTAGGCAGTTCATGTGTGAATCT
27334343 TGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTCTTTCTTAGTCTGGATCGGCAAAA
261 TGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTCTTTCTTAGTCTGGATCGGCAAAA
* *
27334408 GCCGAAAATCTGAAATGCCGAAAACCGATATTTTGTAGATTTGCGAGTGTGCGAATGCTCGTGAG
326 GCCGAAAATCCGAAATGCCGAAAACCGGTATTTTGTAGATTTGCGAGTGTGCGAATGCTCGTGAG
27334473 GTAAATCGATTAATGTTTTTGGTAAGCTGCAATGTTTGGACTGCAAAGTGCATGATTTCTGTGCC
391 GTAAATCGATTAATGTTTTTGGTAAGCTGCAATGTTTGGACTGCAAAGTGCATGATTTCTGTGCC
27334538 CTCGATATTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGCCAACGGGCCCAATTCGGTAAG
456 CTCGATATTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGCCAACGGGCCCAATTCGGTAAG
27334603 AACCGTCGGTAGTGATTCTGTTAGTACGTGAAAGGTAGGAATATGCATGAAAAACCCTAAAATAG
521 AACCGTCGGTAGTGATTCTGTTAGTACGTGAAAGGTAGGAATATGCATGAAAAACCCTAAAATAG
*
27334668 ATAAATTACTGAAATACCTTTAAAAGTGGAAAATTTACAATTTTACCCCTAGGAGATAAATTACC
586 ATAAATTACTGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGGAGATAAATTACC
*
27334733 AAAATACCCCTAGGGTTAAATTGACCTAAATGCATGTTTGACTGTTGTTATTTACTGCATGCCAT
651 GAAATACCCCTAGGGTTAAATTGACCTAAATGCATGTTTGACTGTTGTTATTTACTGCATGCCAT
27334798 GTTTTTATTATCTGATGCATGGGACTGGGATATTGACGTAGGAAGTACTGAAAGTGGCTTGTCCA
716 GTTTTTATTATCTGATGCATGGGACTGGGATATTGACGTAGGAAGTACTGAAAGTGGCTTGTCCA
27334863 CGTACTCAAATTAGTCAAATAGTGAAACATGGGAAACTTTGAGAAAAATCTGGTATTGATTGGCT
781 CGTACTCAAATTAGTCAAATAGTGAAACATGGGAAACTTTGAGAAAAATCTGGTATTGATTGGCT
*
27334928 AAATCAAAAATTCTGAAAATTTTATGGATAGAAGATATATGAGTCTATTTTCAGGGAAAATTAAC
846 AAATCAAAAATTCTGAAAATTTTATGGATAGAAGATATATGAGTCTATTTTCAGGAAAAATTAAC
27334993 GGA
911 GGA
27334996 ACTTGATTTGGAGTTTCGTAGCTCCAGTTATAAATAATTTAGTGACTATTGCTCAGGAAGACAGC
1 ACTTGATTTGGAGTTTCGTAGCTCCAGTTATAAATAATTTAGTGACTATTGCTCAGGAAGACAGC
27335061 TTGCAGTGAAATTATGATTATGTGGTAAACATTGACAAAAATTTATTAATGAGTTGCTTATTGAT
66 TTGCAGTGAAATTATGATTATGTGGTAAACATTGACAAAAATTTATTAATGAGTTGCTTATTGAT
27335126 TTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGCCAAATATTGTAAGGGGTTAATACGTAG
131 TTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGCCAAATATTGTAAGGGGTTAATACGTAG
* * *
27335191 TTTGTATTTGAATAGTTAGATTAACGTGTTAGTAATCCAATTGTAGGCGGTTCGTGTGTGGAT-T
196 TTTGTATTTGAATAGTTAGATTAACGTGTTAGTAATCCAATTGTAGGCAGTTCATGTGTGAATCT
27335255 TCGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTCTTTCTTAGTCTGGATCGGCAAA
261 T-GTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTCTTTCTTAGTCTGGATCGGCAAA
*
27335320 AGCCGAAAATCCGAAATGCCAAAAACCGGTATTTTGTAGATTTGCGAGTGTGCGAATGCTCGTGA
325 AGCCGAAAATCCGAAATGCCGAAAACCGGTATTTTGTAGATTTGCGAGTGTGCGAATGCTCGTGA
*
27335385 GGTAAATCGATTAATATTTTTGGTAAGCTGCAATGTTTGGACTGCAAAGTGCATGATTTCTGTGC
390 GGTAAATCGATTAATGTTTTTGGTAAGCTGCAATGTTTGGACTGCAAAGTGCATGATTTCTGTGC
27335450 CCTCGATATTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGCCAACGGGCCCAATTCGGTAA
455 CCTCGATATTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGCCAACGGGCCCAATTCGGTAA
27335515 GAACCGTCGGTAGTGATTCTGTTAGTACGTGAAAGGTAGGAATATGCATGAAAAACCCTAAAATA
520 GAACCGTCGGTAGTGATTCTGTTAGTACGTGAAAGGTAGGAATATGCATGAAAAACCCTAAAATA
27335580 GATAAATTACTGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGGAGATAAATTAC
585 GATAAATTACTGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGGAGATAAATTAC
27335645 CGAAATACCCCTAGGGTTAAATTGACCTAAATGCATGTTTGACTGTTGTTATTTACTGCATGCCA
650 CGAAATACCCCTAGGGTTAAATTGACCTAAATGCATGTTTGACTGTTGTTATTTACTGCATGCCA
*
27335710 TGTTTTTATTATCTGATGCATGGGACTGGGATATTGACGTAGGAAGTACTGAAAGTGGCTTGTCT
715 TGTTTTTATTATCTGATGCATGGGACTGGGATATTGACGTAGGAAGTACTGAAAGTGGCTTGTCC
27335775 ACGTACT
780 ACGTACT
27335782 GGAGGCTTTG
Statistics
Matches: 1673, Mismatches: 25, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
912 2 0.00
913 1671 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.33
Consensus pattern (913 bp):
ACTTGATTTGGAGTTTCGTAGCTCCAGTTATAAATAATTTAGTGACTATTGCTCAGGAAGACAGC
TTGCAGTGAAATTATGATTATGTGGTAAACATTGACAAAAATTTATTAATGAGTTGCTTATTGAT
TTCTTATAAGCTTACTATGATCTGTAGGTGTGGTTGGCCAAATATTGTAAGGGGTTAATACGTAG
TTTGTATTTGAATAGTTAGATTAACGTGTTAGTAATCCAATTGTAGGCAGTTCATGTGTGAATCT
TGTCAGCATATCGTCGCAAACAGGTGTGTAACTAACACCCTCTTTCTTAGTCTGGATCGGCAAAA
GCCGAAAATCCGAAATGCCGAAAACCGGTATTTTGTAGATTTGCGAGTGTGCGAATGCTCGTGAG
GTAAATCGATTAATGTTTTTGGTAAGCTGCAATGTTTGGACTGCAAAGTGCATGATTTCTGTGCC
CTCGATATTTTTGGGCTTAATGGGCCAAAATTGGAATGATGGGCCAACGGGCCCAATTCGGTAAG
AACCGTCGGTAGTGATTCTGTTAGTACGTGAAAGGTAGGAATATGCATGAAAAACCCTAAAATAG
ATAAATTACTGAAATACCTTTAAAAGTGGAAAATTTACAGTTTTACCCCTAGGAGATAAATTACC
GAAATACCCCTAGGGTTAAATTGACCTAAATGCATGTTTGACTGTTGTTATTTACTGCATGCCAT
GTTTTTATTATCTGATGCATGGGACTGGGATATTGACGTAGGAAGTACTGAAAGTGGCTTGTCCA
CGTACTCAAATTAGTCAAATAGTGAAACATGGGAAACTTTGAGAAAAATCTGGTATTGATTGGCT
AAATCAAAAATTCTGAAAATTTTATGGATAGAAGATATATGAGTCTATTTTCAGGAAAAATTAAC
GGA
Found at i:27335653 original size:26 final size:26
Alignment explanation
Indices: 27335624--27335676 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27335614 TTTACAGTTT
27335624 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
27335650 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
27335676 T
1 T
27335677 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:27336170 original size:137 final size:137
Alignment explanation
Indices: 27335924--27336347 Score: 821
Period size: 137 Copynumber: 3.1 Consensus size: 137
27335914 GAGTAGTCTC
27335924 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
27335989 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
27336054 ACTGTTA
131 ACTGTTA
27336061 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
27336126 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
27336191 ACTGTTA
131 ACTGTTA
27336198 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
*
27336263 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGTCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
27336328 ACTGTTA
131 ACTGTTA
**
27336335 CCTGAATGGGCTT
1 CCCAAATGGGCTT
27336348 AGGCCCAATA
Statistics
Matches: 284, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
137 284 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:27341167 original size:26 final size:26
Alignment explanation
Indices: 27341137--27341189 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
27341127 TTTATAGTTT
27341137 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
27341163 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
27341189 T
1 T
27341190 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:27341683 original size:137 final size:137
Alignment explanation
Indices: 27341437--27341723 Score: 538
Period size: 137 Copynumber: 2.1 Consensus size: 137
27341427 GAGTAGTCTC
27341437 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
* *
27341502 TGTTATTTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCACTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
27341567 ACTGTTA
131 ACTGTTA
27341574 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
1 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
27341639 TGTTATCTGAATAAGGGGCTAAGGCCCACTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
66 TGTTATCTGAATAAGGGGCTAAGGCCCACTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
27341704 ACTGTTA
131 ACTGTTA
**
27341711 CCTGAATGGGCTT
1 CCCAAATGGGCTT
27341724 AGGCCCAATG
Statistics
Matches: 146, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (137 bp):
CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCACTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Found at i:27342297 original size:66 final size:66
Alignment explanation
Indices: 27342191--27342322 Score: 237
Period size: 66 Copynumber: 2.0 Consensus size: 66
27342181 GTTAAGGTGT
27342191 GGCAATGGCGGTATGCATGTCTAGGATTGGATCCGAAGGGAGCTTGGTACTTAAGCAGTCCGATG
1 GGCAATGGCGGTATGCATGTCTAGGATTGGATCCGAAGGGAGCTTGGTACTTAAGCAGTCCGATG
27342256 G
66 G
* * *
27342257 GGCAATGGTGGTATGCATGTCTAGGATTGGTTCCGAAGGGAGCTTGGTACTTAAGCAGTGCGATG
1 GGCAATGGCGGTATGCATGTCTAGGATTGGATCCGAAGGGAGCTTGGTACTTAAGCAGTCCGATG
27342322 G
66 G
27342323 ACTCACCACC
Statistics
Matches: 63, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.22, C:0.15, G:0.37, T:0.26
Consensus pattern (66 bp):
GGCAATGGCGGTATGCATGTCTAGGATTGGATCCGAAGGGAGCTTGGTACTTAAGCAGTCCGATG
G
Found at i:27342771 original size:14 final size:14
Alignment explanation
Indices: 27342754--27342799 Score: 58
Period size: 14 Copynumber: 3.4 Consensus size: 14
27342744 ACCTTGAACT
*
27342754 TTAAATCCTAAACC
1 TTAAACCCTAAACC
*
27342768 TTAAACCCTAAACA
1 TTAAACCCTAAACC
*
27342782 TCAAACCCTAAA-C
1 TTAAACCCTAAACC
27342795 TTAAA
1 TTAAA
27342800 ATTCAAAATC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
13 4 0.15
14 23 0.85
ACGTcount: A:0.48, C:0.28, G:0.00, T:0.24
Consensus pattern (14 bp):
TTAAACCCTAAACC
Found at i:27342779 original size:21 final size:21
Alignment explanation
Indices: 27342739--27342779 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
27342729 ATTTTTTTAC
* **
27342739 CCTAAACCTTGAACTTTAAAT
1 CCTAAACCTTAAACCCTAAAT
27342760 CCTAAACCTTAAACCCTAAA
1 CCTAAACCTTAAACCCTAAA
27342780 CATCAAACCC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.41, C:0.29, G:0.02, T:0.27
Consensus pattern (21 bp):
CCTAAACCTTAAACCCTAAAT
Found at i:27342787 original size:21 final size:21
Alignment explanation
Indices: 27342763--27342836 Score: 57
Period size: 21 Copynumber: 3.6 Consensus size: 21
27342753 TTTAAATCCT
27342763 AAACCTTAAACCCTAAACATC
1 AAACCTTAAACCCTAAACATC
* *
27342784 AAACCCTAAA-CTTAAA-ATTC
1 AAACCTTAAACCCTAAACA-TC
*
27342804 AAAATCC-TAAACCC-AAACCTC
1 -AAA-CCTTAAACCCTAAACATC
*
27342825 AAACTTTAAACC
1 AAACCTTAAACC
27342837 TTGAACCCTG
Statistics
Matches: 42, Mismatches: 5, Indels: 13
0.70 0.08 0.22
Matches are distributed among these distances:
19 2 0.05
20 16 0.38
21 21 0.50
22 3 0.07
ACGTcount: A:0.49, C:0.31, G:0.00, T:0.20
Consensus pattern (21 bp):
AAACCTTAAACCCTAAACATC
Found at i:27344675 original size:26 final size:26
Alignment explanation
Indices: 27344646--27344698 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
27344636 TCAAACATGC
27344646 ATTTAAGTCAATTTAAC-CCTAGGGGT
1 ATTTAAGT-AATTTAACTCCTAGGGGT
** *
27344672 ATTTCGGTAATTTATCTCCTAGGGGT
1 ATTTAAGTAATTTAACTCCTAGGGGT
27344698 A
1 A
27344699 AAATTGTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (26 bp):
ATTTAAGTAATTTAACTCCTAGGGGT
Found at i:27346213 original size:26 final size:26
Alignment explanation
Indices: 27346183--27346472 Score: 571
Period size: 26 Copynumber: 11.2 Consensus size: 26
27346173 TGAAATTCCC
27346183 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
27346209 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346235 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346261 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346287 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346313 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346339 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346365 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346391 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346417 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346443 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27346469 ATCA
1 ATCA
27346473 ATTTGTATCA
Statistics
Matches: 262, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
26 262 1.00
ACGTcount: A:0.35, C:0.27, G:0.07, T:0.31
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:27347941 original size:37 final size:37
Alignment explanation
Indices: 27347891--27347964 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
27347881 GGGTAATTGA
27347891 TGCTCAGCTTTCACTTGCCGGCATGTCAGACATTTCC
1 TGCTCAGCTTTCACTTGCCGGCATGTCAGACATTTCC
*
27347928 TGCTCAGCTTTCACTTGCTGGCATGTCAGACATTTCC
1 TGCTCAGCTTTCACTTGCCGGCATGTCAGACATTTCC
27347965 CTACAAACTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.16, C:0.31, G:0.19, T:0.34
Consensus pattern (37 bp):
TGCTCAGCTTTCACTTGCCGGCATGTCAGACATTTCC
Found at i:27352774 original size:16 final size:16
Alignment explanation
Indices: 27352753--27352794 Score: 75
Period size: 16 Copynumber: 2.6 Consensus size: 16
27352743 GGACAAAACT
27352753 TTGTTCTTTTCACCCC
1 TTGTTCTTTTCACCCC
27352769 TTGTTCTTTTCACCCC
1 TTGTTCTTTTCACCCC
*
27352785 TTTTTCTTTT
1 TTGTTCTTTT
27352795 AATAAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.05, C:0.31, G:0.05, T:0.60
Consensus pattern (16 bp):
TTGTTCTTTTCACCCC
Found at i:27352888 original size:26 final size:26
Alignment explanation
Indices: 27352852--27352933 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
27352842 TGAAATTCCC
*
27352852 ATCATGGAACATTTACCTAACTCATT
1 ATCATGGAACATTTACCTAACCCATT
*
27352878 ATCATGAAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27352904 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
27352930 ATCA
1 ATCA
27352934 ATTTGTATCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.37, C:0.26, G:0.06, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:27354515 original size:42 final size:43
Alignment explanation
Indices: 27354406--27354524 Score: 156
Period size: 41 Copynumber: 2.9 Consensus size: 43
27354396 CGTATAAAAT
* * *
27354406 ACCGGCA-CAGAGCCTGCTAGGTAATAAACCTGAT-TCAAGAC
1 ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATATCAAGAC
* *
27354447 ACCGGCAT-AAAGCATGCTAGGAAATAAGCCTGATATC-ATAC
1 ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATATCAAGAC
*
27354488 ACCGGCATCAAAGCCTGCTAGGCAATAAGCCTGATAT
1 ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATAT
27354525 ATCACTGTTA
Statistics
Matches: 68, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
41 40 0.59
42 28 0.41
ACGTcount: A:0.35, C:0.25, G:0.21, T:0.18
Consensus pattern (43 bp):
ACCGGCATCAAAGCCTGCTAGGAAATAAGCCTGATATCAAGAC
Found at i:27354660 original size:27 final size:29
Alignment explanation
Indices: 27354621--27354678 Score: 84
Period size: 27 Copynumber: 2.1 Consensus size: 29
27354611 CGGCTATAAC
*
27354621 CATAGAAATTCATACA-ATT-AAATTCAA
1 CATAGAAAATCATACACATTCAAATTCAA
*
27354648 CATATAAAATCATACACATTCAAATTCAA
1 CATAGAAAATCATACACATTCAAATTCAA
27354677 CA
1 CA
27354679 ACGTTTATTG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 14 0.52
28 3 0.11
29 10 0.37
ACGTcount: A:0.52, C:0.19, G:0.02, T:0.28
Consensus pattern (29 bp):
CATAGAAAATCATACACATTCAAATTCAA
Found at i:27359421 original size:43 final size:43
Alignment explanation
Indices: 27359259--27359422 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 43
27359249 AGCTCGTACA
* * * * *
27359259 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCA-CATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATA-CG
* * * * *
27359301 ATGCCACTGTCCAAGATAGGGTCTTACACGAAATCATAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATACG
* * *
27359344 ATACCAATGTCCCAGACATGGTCTTACACATAATCATAATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATACG
* * *
27359387 ATGCTAATGTCCCAGACACGGTCTTACATGTAATCA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCA
27359423 CATCTTGATA
Statistics
Matches: 99, Mismatches: 21, Indels: 3
0.80 0.17 0.02
Matches are distributed among these distances:
42 5 0.05
43 91 0.92
44 3 0.03
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCATAATACG
Found at i:27361781 original size:22 final size:22
Alignment explanation
Indices: 27361753--27361797 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
27361743 ATCAATAACG
27361753 ATTAATTTTTA-AGGTTCTTATA
1 ATTAATTTTTACA-GTTCTTATA
27361775 ATTAATTTTTACAGTTCTTATA
1 ATTAATTTTTACAGTTCTTATA
27361797 A
1 A
27361798 CTTAGTCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.33, C:0.07, G:0.07, T:0.53
Consensus pattern (22 bp):
ATTAATTTTTACAGTTCTTATA
Found at i:27362017 original size:20 final size:21
Alignment explanation
Indices: 27361972--27362019 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
27361962 TGAGGTTCGG
*
27361972 GGTTTG-GTTTCGAGGTTTAA
1 GGTTTGAGTTTAGAGGTTTAA
**
27361992 AATTTGAGTTTAG-GGTTTAA
1 GGTTTGAGTTTAGAGGTTTAA
27362012 GGTTTGAG
1 GGTTTGAG
27362020 GTTTGGCTTT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.44
Consensus pattern (21 bp):
GGTTTGAGTTTAGAGGTTTAA
Found at i:27363624 original size:22 final size:22
Alignment explanation
Indices: 27363584--27363645 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
27363574 TAGTATAAAA
27363584 AAAATATA-AC-TAATA-ATATT
1 AAAATATATACATAATATATA-T
27363604 GAAAATATATACATAATATATAT
1 -AAAATATATACATAATATATAT
*
27363627 AAAACATATACGAT-ATATA
1 AAAATATATAC-ATAATATA
27363646 CACATACATT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
21 8 0.22
22 17 0.47
23 8 0.22
24 3 0.08
ACGTcount: A:0.58, C:0.06, G:0.03, T:0.32
Consensus pattern (22 bp):
AAAATATATACATAATATATAT
Found at i:27363979 original size:3 final size:3
Alignment explanation
Indices: 27363955--27364017 Score: 58
Period size: 3 Copynumber: 20.7 Consensus size: 3
27363945 AAGTACCTAC
* *
27363955 TAA TAA TAT TATA TAA -ATA TAA TAA TATG TAA TAA TAA T-A TAA TAA
1 TAA TAA TAA TA-A TAA TA-A TAA TAA TA-A TAA TAA TAA TAA TAA TAA
*
27364001 TAA TAA TAA CAA TAA TA
1 TAA TAA TAA TAA TAA TA
27364018 GTAAAAATAC
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
2 3 0.06
3 41 0.84
4 5 0.10
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:27364026 original size:18 final size:17
Alignment explanation
Indices: 27363956--27364026 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 17
27363946 AGTACCTACT
* *
27363956 AATAATATTATATAAATAT
1 AATAATAGTA-AT-AATAA
27363975 AATAATATGTAATAATAA
1 AATAATA-GTAATAATAA
* *
27363993 TATAATAATAATAATAA
1 AATAATAGTAATAATAA
*
27364010 CAATAATAGTAAAAATA
1 -AATAATAGTAATAATA
27364027 CAAAAGAAAG
Statistics
Matches: 43, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
17 9 0.21
18 23 0.53
19 9 0.21
20 2 0.05
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.34
Consensus pattern (17 bp):
AATAATAGTAATAATAA
Found at i:27364089 original size:14 final size:15
Alignment explanation
Indices: 27364064--27364123 Score: 58
Period size: 14 Copynumber: 4.2 Consensus size: 15
27364054 GTAAGGAAAG
27364064 TAAATAATAATATAT
1 TAAATAATAATATAT
27364079 TAAAT-ATAATATA-
1 TAAATAATAATATAT
*
27364092 TATAATAGTAA-ATA-
1 TA-AATAATAATATAT
27364106 T-AATAATAATATTAT
1 TAAATAATAATA-TAT
27364121 TAA
1 TAA
27364124 GTATAGTATA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
12 7 0.19
13 3 0.08
14 17 0.46
15 9 0.24
16 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (15 bp):
TAAATAATAATATAT
Found at i:27364128 original size:21 final size:20
Alignment explanation
Indices: 27364066--27364128 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 20
27364056 AAGGAAAGTA
27364066 AATAATAATATATTAAATAT
1 AATAATAATATATTAAATAT
*
27364086 AAT-ATATATAATAGTAAATAT
1 AATAATA-AT-ATATTAAATAT
*
27364107 AATAATAATATTATTAAGTAT
1 AATAATAATA-TATTAAATAT
27364128 A
1 A
27364129 GTATAAATAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
19 3 0.08
20 6 0.17
21 24 0.67
22 3 0.08
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (20 bp):
AATAATAATATATTAAATAT
Found at i:27365909 original size:13 final size:13
Alignment explanation
Indices: 27365881--27365915 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
27365871 TGAGTTGACT
27365881 TTTGAAAACAGAA
1 TTTGAAAACAGAA
*
27365894 TTTGCAAAACAGAT
1 TTTG-AAAACAGAA
27365908 TTTGAAAA
1 TTTGAAAA
27365916 TACCTCGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.49, C:0.09, G:0.14, T:0.29
Consensus pattern (13 bp):
TTTGAAAACAGAA
Found at i:27365914 original size:88 final size:88
Alignment explanation
Indices: 27365762--27366016 Score: 228
Period size: 88 Copynumber: 2.9 Consensus size: 88
27365752 TGATCCTAAG
* *
27365762 CTCAACTCATTTCTTGCAATATGAATTGACTCTTTAAAACTAGACATTAAAAACAAAAATTGAAA
1 CTCAACTCACTTCTCGCAATATGAATTGACTCTTTAAAACTAGACATTAAAAACAAAAATTGAAA
* *
27365827 ATAGCTCAGCACGTGAGCCAAGA
66 ATACCTCAGCACGTGACCCAAGA
* * * * **
27365850 CTTAACTCACTTCTCGCAATATGAGTTGACT-TTTGAAAAC-AGA-ATTTGCAAAACAGATTTTG
1 CTCAACTCACTTCTCGCAATATGAATTGACTCTTT-AAAACTAGACA-TT-AAAAACAAAAATTG
* * * *
27365912 AAAATACCTCGGCATGTGACCCGAGG
63 AAAATACCTCAGCACGTGACCCAAGA
* * * * * * * * *
27365938 CTCAACTCACCTCTCGTAATATGAATTAATTTTTTGAAAAGTATAAATTCAAAAAACATAAATTG
1 CTCAACTCACTTCTCGCAATATGAATTGACTCTTT-AAAACTAGACATT--AAAAACAAAAATTG
27366003 AAAATACCTCAGCA
63 AAAATACCTCAGCA
27366017 TGTAAGCCGA
Statistics
Matches: 132, Mismatches: 28, Indels: 11
0.77 0.16 0.06
Matches are distributed among these distances:
86 1 0.01
87 8 0.06
88 87 0.66
89 8 0.06
90 4 0.03
91 24 0.18
ACGTcount: A:0.40, C:0.19, G:0.13, T:0.28
Consensus pattern (88 bp):
CTCAACTCACTTCTCGCAATATGAATTGACTCTTTAAAACTAGACATTAAAAACAAAAATTGAAA
ATACCTCAGCACGTGACCCAAGA
Found at i:27366285 original size:3 final size:3
Alignment explanation
Indices: 27366277--27366506 Score: 312
Period size: 3 Copynumber: 77.3 Consensus size: 3
27366267 NNNNNNNNNA
27366277 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
27366325 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
27366373 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
27366421 TAT TAT TACC T-T TA- TAT TAC TAT T-T GTAT TAA TA- TAT TAT TAGT
1 TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT TAT TAT TAT TA-T
* * *
27366465 T-T TAT TAAT GTAT TGT TAT TTT TAT T-T TAT T-T CAT TAT TAT T
1 TAT TAT T-AT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
27366507 GTTTCATCCT
Statistics
Matches: 204, Mismatches: 11, Indels: 24
0.85 0.05 0.10
Matches are distributed among these distances:
2 11 0.05
3 184 0.90
4 8 0.04
5 1 0.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:27366456 original size:20 final size:20
Alignment explanation
Indices: 27366433--27366478 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
27366423 TTATTACCTT
27366433 TATATTACTA-TTTGTATTAA
1 TATATTACTAGTTT-TATTAA
*
27366453 TATATTATTAGTTTTATTAA
1 TATATTACTAGTTTTATTAA
*
27366473 TGTATT
1 TATATT
27366479 GTTATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (20 bp):
TATATTACTAGTTTTATTAA
Found at i:27366542 original size:23 final size:22
Alignment explanation
Indices: 27366499--27366543 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
27366489 TTTTATTTCA
*
27366499 TTATTATTGTTTCATCCTTATT
1 TTATTATTGTTTCATCATTATT
* *
27366521 TTATTTTTGTCTTCATTATTATT
1 TTATTATTGT-TTCATCATTATT
27366544 GCATTATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.18, C:0.11, G:0.04, T:0.67
Consensus pattern (22 bp):
TTATTATTGTTTCATCATTATT
Found at i:27370681 original size:43 final size:42
Alignment explanation
Indices: 27370586--27370695 Score: 132
Period size: 43 Copynumber: 2.6 Consensus size: 42
27370576 ATCAATATGT
* * *
27370586 GATTACATGTAAGACCATGTCTGAGACATTGGCATTGTATTGA
1 GATTACGTGTAAGACCATGTCTG-GACATTGGCATCGTAATGA
*
27370629 GATTACGTGTAAGACCATGTCTAGGACATTGGCATCGTTAAT-C
1 GATTACGTGTAAGACCATGTCT-GGACATTGGCATCG-TAATGA
* *
27370672 GATTTCGTGTAAGACCCTGTCTGG
1 GATTACGTGTAAGACCATGTCTGG
27370696 GATAGTGGCA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
42 2 0.03
43 53 0.90
44 4 0.07
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTACGTGTAAGACCATGTCTGGACATTGGCATCGTAATGA
Found at i:27371417 original size:43 final size:43
Alignment explanation
Indices: 27371368--27371485 Score: 218
Period size: 43 Copynumber: 2.7 Consensus size: 43
27371358 TGAAAAAAAT
*
27371368 GCCGCTAAAAGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
27371411 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
*
27371454 GCCACTAAAGGTCAAGGCTTTTAGCGGCGTTT
1 GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTT
27371486 TTTCTACAAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 73 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (43 bp):
GCCGCTAAAGGTCAAGGCTTTTAGCGGCGTTTGTGGGAAAAGC
Found at i:27377520 original size:9 final size:9
Alignment explanation
Indices: 27377506--27377633 Score: 121
Period size: 9 Copynumber: 13.6 Consensus size: 9
27377496 ATGTATTCGT
27377506 TAAGTTATG
1 TAAGTTATG
27377515 TAAGTTGTTATG
1 TAA---GTTATG
*
27377527 TACGTTATG
1 TAAGTTATG
*
27377536 TGAGTTATG
1 TAAGTTATG
*
27377545 TAAATTATG
1 TAAGTTATG
27377554 TAAGTTATG
1 TAAGTTATG
*
27377563 TGAGTTATG
1 TAAGTTATG
27377572 TAAGTTGTTATG
1 TAA---GTTATG
*
27377584 TAAATTATG
1 TAAGTTATG
*
27377593 TAAGTTATA
1 TAAGTTATG
*
27377602 TGAGTTATG
1 TAAGTTATG
27377611 TAAGTTATG
1 TAAGTTATG
* *
27377620 TAATTTATT
1 TAAGTTATG
27377629 TAAGT
1 TAAGT
27377634 AATGATCAAT
Statistics
Matches: 96, Mismatches: 17, Indels: 12
0.77 0.14 0.10
Matches are distributed among these distances:
9 79 0.82
12 17 0.18
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (9 bp):
TAAGTTATG
Found at i:27377582 original size:39 final size:39
Alignment explanation
Indices: 27377539--27377616 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
27377529 CGTTATGTGA
*
27377539 GTTATGTAAATTATGTAAGTTATGTGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
27377578 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
1 GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
27377617 ATGTAATTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.22, T:0.46
Consensus pattern (39 bp):
GTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTT
Found at i:27377633 original size:57 final size:57
Alignment explanation
Indices: 27377506--27377633 Score: 175
Period size: 57 Copynumber: 2.2 Consensus size: 57
27377496 ATGTATTCGT
** * *
27377506 TAAGTTATGTAAGTTGTTATGTACGTTATGTGAGTTATGTAAATTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* * *
27377563 TGAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATGAGTTATGTAAGTTATG
1 TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
* *
27377620 TAATTTATTTAAGT
1 TAAGTTATGTAAGT
27377634 AATGATCAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
57 61 1.00
ACGTcount: A:0.31, C:0.01, G:0.21, T:0.47
Consensus pattern (57 bp):
TAAGTTATGTAAGTTGTTATGTAAATTATGTAAGTTATATAAATTATGTAAGTTATG
Found at i:27378176 original size:241 final size:241
Alignment explanation
Indices: 27377753--27378670 Score: 1694
Period size: 241 Copynumber: 3.8 Consensus size: 241
27377743 TGAATATAGT
* *
27377753 AATTTTTTAAGATTCATTATACGTAGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
27377818 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
* * * * *
27377883 ATGTTGGAGAGAAAGTCAGCAATTGTTGTAATTTTAATGGTCAAGCAAGCTACATGGTAATAAAT
131 AGGTTGAAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
27377948 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
27377994 AATTTTTTAAGATTCATCATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
27378059 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
27378124 AGGTTGAAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGAAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
27378189 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
*
27378235 AATTTTTTAAGATTCATCATATGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
27378300 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
27378365 AGGTTGAAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
131 AGGTTGAAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
27378430 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
196 ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
* *
27378476 AATTTTTTAAGATTCATCATACGTGGTGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGA
1 AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
*
27378541 TCGATATAAGGCAACCTGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
66 TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
*
27378606 AGGTTGGAGAGAAGGTCAGCTATATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGT-ATAA
131 AGGTTGAAGAGAAGGTCAGC--TATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAA
27378670 A
194 A
27378671 ATTAATTCAT
Statistics
Matches: 660, Mismatches: 15, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
241 617 0.93
242 5 0.01
243 38 0.06
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (241 bp):
AATTTTTTAAGATTCATCATACGTGGCGTTGTTACACCTAGGGAGGATCCATTATATCTTACAGC
TCGATATAAGGCAACCCGTCAGGTTTCCAGCCTATATACTTTGAATCTTTAAAATATTTAAAAAA
AGGTTGAAGAGAAGGTCAGCTATTGTTGTAATTTTAATGGACAAGCAAGCTACATGGTAATAAAT
ATTCAATAGTAAATGAGCTCGATAGAACTTTTTTCAAGTCTTTTTG
Found at i:27381970 original size:18 final size:19
Alignment explanation
Indices: 27381949--27381984 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
27381939 TTTGAAATTC
27381949 TTCATCTCT-CAATTCTAT
1 TTCATCTCTGCAATTCTAT
*
27381967 TTCATCTTTGCAATTCTA
1 TTCATCTCTGCAATTCTA
27381985 CAAAAAGAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.22, C:0.25, G:0.03, T:0.50
Consensus pattern (19 bp):
TTCATCTCTGCAATTCTAT
Found at i:27386307 original size:35 final size:36
Alignment explanation
Indices: 27386263--27386343 Score: 146
Period size: 35 Copynumber: 2.3 Consensus size: 36
27386253 AATCATATCT
*
27386263 TCTAAGATTGTATCATATCTAAGATTGCA-ATCATA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
27386298 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
1 TCTAAGATTGTATCATATCTAAGATTGCATATCACA
27386334 TCTAAGATTG
1 TCTAAGATTG
27386344 CATATCATTG
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
35 29 0.66
36 15 0.34
ACGTcount: A:0.36, C:0.15, G:0.12, T:0.37
Consensus pattern (36 bp):
TCTAAGATTGTATCATATCTAAGATTGCATATCACA
Found at i:27386336 original size:19 final size:19
Alignment explanation
Indices: 27386263--27386351 Score: 134
Period size: 17 Copynumber: 4.9 Consensus size: 19
27386253 AATCATATCT
27386263 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
27386280 TCTAAGATTGCA-ATCATA
1 TCTAAGATTGCATATCATA
27386298 TCTAAGATTG--TATCATA
1 TCTAAGATTGCATATCATA
*
27386315 TCTAAGATTGCATATCACA
1 TCTAAGATTGCATATCATA
27386334 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
27386352 TGCAGATTAT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
17 26 0.40
18 16 0.25
19 23 0.35
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:27389640 original size:24 final size:24
Alignment explanation
Indices: 27389608--27389654 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
27389598 AACACCTAAT
*
27389608 GATTTATATA-ATAACATATAAAAA
1 GATTAATATATATAA-ATATAAAAA
27389632 GATTAATATATATAAATATAAAA
1 GATTAATATATATAAATATAAAA
27389655 TAAAGTGAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.34
Consensus pattern (24 bp):
GATTAATATATATAAATATAAAAA
Found at i:27390044 original size:14 final size:16
Alignment explanation
Indices: 27390022--27390058 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
27390012 ATCTTTAATA
*
27390022 ATAATAATAT-ATAG-
1 ATAAAAATATAATAGT
27390036 ATAAAAATATAATAGT
1 ATAAAAATATAATAGT
27390052 ATAAAAA
1 ATAAAAA
27390059 ATGACATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 9 0.45
15 4 0.20
16 7 0.35
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (16 bp):
ATAAAAATATAATAGT
Found at i:27390169 original size:12 final size:12
Alignment explanation
Indices: 27390105--27390200 Score: 79
Period size: 12 Copynumber: 7.8 Consensus size: 12
27390095 ATATATGTAT
27390105 ATAATATATATAA
1 ATAATA-ATATAA
*
27390118 ATAATTA-ATAA
1 ATAATAATATAA
*
27390129 ATATATAATACAA
1 ATA-ATAATATAA
* *
27390142 GTAAAAAGTATAA
1 ATAATAA-TATAA
*
27390155 ATAATAATGTAA
1 ATAATAATATAA
*
27390167 ATAATAATTTAA
1 ATAATAATATAA
27390179 A-AATATATAATAA
1 ATAATA-AT-ATAA
27390192 ATAATAATA
1 ATAATAATA
27390201 ACATGAAATA
Statistics
Matches: 66, Mismatches: 11, Indels: 13
0.73 0.12 0.14
Matches are distributed among these distances:
11 11 0.17
12 26 0.39
13 25 0.38
14 4 0.06
ACGTcount: A:0.62, C:0.01, G:0.03, T:0.33
Consensus pattern (12 bp):
ATAATAATATAA
Found at i:27401998 original size:21 final size:19
Alignment explanation
Indices: 27401964--27402025 Score: 54
Period size: 21 Copynumber: 2.9 Consensus size: 19
27401954 TAAGTTATAT
27401964 ATAATAATATAATATGAATAAA
1 ATAATAA-A-AATAT-AATAAA
27401986 AT-ATAAGGAAATATAATATAAA
1 ATAATAA--AAATAT-A-ATAAA
27402008 ATAATAAAAATATAATAA
1 ATAATAAAAATATAATAA
27402026 GTAATTTGCA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.11
20 1 0.03
21 16 0.46
22 10 0.29
23 4 0.11
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (19 bp):
ATAATAAAAATATAATAAA
Found at i:27402058 original size:18 final size:18
Alignment explanation
Indices: 27402037--27402077 Score: 50
Period size: 17 Copynumber: 2.3 Consensus size: 18
27402027 TAATTTGCAT
27402037 ATAAAATA-TAGTAAAAAA
1 ATAAAATAGTA-TAAAAAA
*
27402055 AT-AATTAGTATAAAAAA
1 ATAAAATAGTATAAAAAA
27402072 ATAAAA
1 ATAAAA
27402078 AATATATAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 4
0.76 0.08 0.16
Matches are distributed among these distances:
17 13 0.68
18 6 0.32
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (18 bp):
ATAAAATAGTATAAAAAA
Found at i:27405120 original size:6 final size:6
Alignment explanation
Indices: 27405090--27405276 Score: 107
Period size: 6 Copynumber: 30.3 Consensus size: 6
27405080 AAGAAACATT
* * * * *
27405090 ATCAGA ATTAGA ATCA-A CATGAGA ATCAGA ATCAG- GTGACAAA ATCAAA
1 ATCAGA ATCAGA ATCAGA -ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * *
27405139 ATCAGA ATCAAA ATCAGA ATTAGGTA A-CAGA ATCAGA ATCAGT ATCAGGTA
1 ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCA-G-A
* * * *
27405190 A-CAGA ATCAGA ATCAGA ATCAGA ACCATA ATTAGA ATTAGGTA A-CAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA
* *
27405238 ATCAGA ATCAGT ATCAGGTA A-CAGG ATCAGA ATCAGA AT
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA AT
27405277 ATGAATGCAA
Statistics
Matches: 140, Mismatches: 24, Indels: 34
0.71 0.12 0.17
Matches are distributed among these distances:
5 9 0.06
6 111 0.79
7 13 0.09
8 7 0.05
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (6 bp):
ATCAGA
Found at i:27405142 original size:37 final size:37
Alignment explanation
Indices: 27405113--27405185 Score: 101
Period size: 37 Copynumber: 2.0 Consensus size: 37
27405103 TCAACATGAG
*
27405113 AATCAGAATCAGGTGACAAAATCAAAATCAGAATCAA
1 AATCAGAATCAGGTAACAAAATCAAAATCAGAATCAA
* * * *
27405150 AATCAGAATTAGGTAACAGAATCAGAATCAGTATCA
1 AATCAGAATCAGGTAACAAAATCAAAATCAGAATCA
27405186 GGTAACAGAA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (37 bp):
AATCAGAATCAGGTAACAAAATCAAAATCAGAATCAA
Found at i:27405169 original size:25 final size:25
Alignment explanation
Indices: 27405141--27405276 Score: 151
Period size: 25 Copynumber: 5.7 Consensus size: 25
27405131 AAATCAAAAT
* *
27405141 CAGAATCAAAATCAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
27405166 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
27405191 CAGAATCAGAATCAGAATCA-G-AA
1 CAGAATCAGAATCAGAATCAGGTAA
* * *
27405214 C-----CATAATTAGAATTAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
27405234 CAGAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTAA
*
27405259 CAGGATCAGAATCAGAAT
1 CAGAATCAGAATCAGAAT
27405277 ATGAATGCAA
Statistics
Matches: 91, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
18 11 0.12
19 1 0.01
20 3 0.03
23 3 0.03
24 1 0.01
25 72 0.79
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTAA
Found at i:27405213 original size:43 final size:43
Alignment explanation
Indices: 27405166--27405273 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 43
27405156 AATTAGGTAA
* *
27405166 CAGAATCAGAATCAGTATCAGGTAACAGAATCAGAATCAGAAT
1 CAGAACCAGAATCAGAATCAGGTAACAGAATCAGAATCAGAAT
* * * *
27405209 CAGAACCATAATTAGAATTAGGTAACAGAATCAGAATCAGTAT
1 CAGAACCAGAATCAGAATCAGGTAACAGAATCAGAATCAGAAT
*
27405252 CAGGTAA-CAGGATCAGAATCAG
1 CA-G-AACCAGAATCAGAATCAG
27405274 AATATGAATG
Statistics
Matches: 53, Mismatches: 10, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
43 39 0.74
44 12 0.23
45 2 0.04
ACGTcount: A:0.45, C:0.16, G:0.19, T:0.19
Consensus pattern (43 bp):
CAGAACCAGAATCAGAATCAGGTAACAGAATCAGAATCAGAAT
Found at i:27405273 original size:68 final size:68
Alignment explanation
Indices: 27405132--27405276 Score: 245
Period size: 68 Copynumber: 2.1 Consensus size: 68
27405122 CAGGTGACAA
* *
27405132 AATCAAAATCAGAATCAAAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAAT
1 AATCAGAATCAGAACCAAAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAAT
27405197 CAG
66 CAG
* * *
27405200 AATCAGAATCAGAACCATAATTAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGGAT
1 AATCAGAATCAGAACCAAAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAAT
27405265 CAG
66 CAG
27405268 AATCAGAAT
1 AATCAGAAT
27405277 ATGAATGCAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
68 72 1.00
ACGTcount: A:0.48, C:0.14, G:0.17, T:0.20
Consensus pattern (68 bp):
AATCAGAATCAGAACCAAAATCAGAATTAGGTAACAGAATCAGAATCAGTATCAGGTAACAGAAT
CAG
Done.