Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr2
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 61750188
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 1877335 characters in sequence are not A, C, G, or T
File 99 of 186
Found at i:32508350 original size:37 final size:37
Alignment explanation
Indices: 32508296--32508371 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
32508286 GAGTTCTAAG
* * * *
32508296 GACCCGATGACTACGTGTGGGGATTTTGTCCGGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCAGGTAA
*
32508333 GACCCGATAACTTCGTGTGGAGATTATGTCCAGGTAA
1 GACCCGATAACTACGTGTGGAGATTATGTCCAGGTAA
32508370 GA
1 GA
32508372 TTTCGTAATA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.26
Consensus pattern (37 bp):
GACCCGATAACTACGTGTGGAGATTATGTCCAGGTAA
Found at i:32513755 original size:30 final size:30
Alignment explanation
Indices: 32513710--32513768 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
32513700 GCCTTCCCTT
*
32513710 CCCATTATTGATGCTTAAAGGGAAGGATAA
1 CCCATGATTGATGCTTAAAGGGAAGGATAA
*
32513740 CCCATGATTGGTGCTTAAAGGGAAGGATA
1 CCCATGATTGATGCTTAAAGGGAAGGATA
32513769 GCGACTTGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (30 bp):
CCCATGATTGATGCTTAAAGGGAAGGATAA
Found at i:32515805 original size:39 final size:39
Alignment explanation
Indices: 32515747--32515869 Score: 138
Period size: 39 Copynumber: 3.2 Consensus size: 39
32515737 TATCATATCC
* **
32515747 AGAATACGGAGGTATATTTTGCTGAAAACTGCTTGAGCG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
* * ** **
32515786 AGAATAGGGAGATGGATTTTGCTTAAAACTGCCAGATTG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
***
32515825 AGAATACGGAGATGGATCCAGCTGAAAACTGCTTGAGCG
1 AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
32515864 AGAATA
1 AGAATA
32515870 AGACTTCGGG
Statistics
Matches: 66, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
39 66 1.00
ACGTcount: A:0.34, C:0.13, G:0.28, T:0.24
Consensus pattern (39 bp):
AGAATACGGAGATGGATTTTGCTGAAAACTGCTTGAGCG
Found at i:32524437 original size:18 final size:18
Alignment explanation
Indices: 32524388--32524439 Score: 77
Period size: 18 Copynumber: 2.9 Consensus size: 18
32524378 CATTGAAGTG
* *
32524388 TTTCAATGAAAACATTGT
1 TTTCATTGAAAACCTTGT
*
32524406 TTTCATTAAAAACCTTGT
1 TTTCATTGAAAACCTTGT
32524424 TTTCATTGAAAACCTT
1 TTTCATTGAAAACCTT
32524440 TCCTTAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.35, C:0.15, G:0.08, T:0.42
Consensus pattern (18 bp):
TTTCATTGAAAACCTTGT
Found at i:32526148 original size:14 final size:15
Alignment explanation
Indices: 32526129--32526161 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
32526119 ATATTTAACT
32526129 TGTTCTTAATT-ATG
1 TGTTCTTAATTCATG
32526143 TGTTCTTAATTCATG
1 TGTTCTTAATTCATG
32526158 TGTT
1 TGTT
32526162 GATATTCCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 11 0.61
15 7 0.39
ACGTcount: A:0.18, C:0.09, G:0.15, T:0.58
Consensus pattern (15 bp):
TGTTCTTAATTCATG
Found at i:32529531 original size:14 final size:15
Alignment explanation
Indices: 32529512--32529541 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
32529502 GTTTATTATA
32529512 TGTG-AAGTATCATG
1 TGTGAAAGTATCATG
32529526 TGTGAAAGTATCATG
1 TGTGAAAGTATCATG
32529541 T
1 T
32529542 CTAAATTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.30, C:0.07, G:0.27, T:0.37
Consensus pattern (15 bp):
TGTGAAAGTATCATG
Found at i:32529780 original size:31 final size:31
Alignment explanation
Indices: 32529726--32529786 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 31
32529716 ATTATATGCA
* *
32529726 TTTTATATATAAGAAATATAATTATTAAAAG
1 TTTTATATATAAGAAATAGAATTAATAAAAG
*
32529757 TTTTATA-ATATGAAATAAGAATTAATAAAA
1 TTTTATATATAAGAAAT-AGAATTAATAAAA
32529787 CAAAAAGGGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 8 0.31
31 18 0.69
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (31 bp):
TTTTATATATAAGAAATAGAATTAATAAAAG
Found at i:32532390 original size:37 final size:38
Alignment explanation
Indices: 32532327--32532445 Score: 136
Period size: 37 Copynumber: 3.1 Consensus size: 38
32532317 TTTAAGTTCA
* *
32532327 GATATAATACTAGCACTAGGCTTGCGGGACTTTAA-CCG
1 GATATAATAC-AGCACTAAGCCTGCGGGACTTTAACCCG
*
32532365 GATATAATACAGCACGAAGCCTGCGGGA-TTTAACCCG
1 GATATAATACAGCACTAAGCCTGCGGGACTTTAACCCG
* *
32532402 GATATAATTCCAGCA-TATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAA-TACAGCACTA-AGCCTGCGGGACTTTAA-CCCG
32532442 GATA
1 GATA
32532446 CACATCAAAT
Statistics
Matches: 70, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
36 5 0.07
37 26 0.37
38 26 0.37
39 5 0.07
40 8 0.11
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (38 bp):
GATATAATACAGCACTAAGCCTGCGGGACTTTAACCCG
Found at i:32534926 original size:43 final size:43
Alignment explanation
Indices: 32534851--32535049 Score: 206
Period size: 43 Copynumber: 4.7 Consensus size: 43
32534841 GCTGGTGAAT
* * * * *
32534851 AATATTATAGGGCTTCGGGCC-AGCAGGTTATAATACCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
*
32534893 GATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* * * ** *
32534936 AATGATATCGGGCTTCAAGTCTAGCAGGCT-TCGTGCAGGTGA
1 AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
* * *
32534978 GATAATATCAGGCTTCGAGCCTAGCTA-GTTATAATGCCGGTGA
1 AATAATATCGGGCTTCGAGCCTAGC-AGGCTATAATGCCGGTGA
* * *
32535021 AATGATATCAGGCTTCAAGCCTAGCAGGC
1 AATAATATCGGGCTTCGAGCCTAGCAGGC
32535050 GAAATGTCGA
Statistics
Matches: 127, Mismatches: 26, Indels: 7
0.79 0.16 0.04
Matches are distributed among these distances:
42 49 0.39
43 78 0.61
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.25
Consensus pattern (43 bp):
AATAATATCGGGCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
Found at i:32534977 original size:85 final size:85
Alignment explanation
Indices: 32534888--32535049 Score: 272
Period size: 85 Copynumber: 1.9 Consensus size: 85
32534878 TTATAATACC
* *
32534888 GGTGAGATAATATCGGGCTTCGAGCCTAGC-AGGCTATAATGCCGGTGAAATGATATCGGGCTTC
1 GGTGAGATAATATCAGGCTTCGAGCCTAGCTA-GCTATAATGCCGGTGAAATGATATCAGGCTTC
*
32534952 AAGTCTAGCAGGCTTCGTGCA
65 AAGCCTAGCAGGCTTCGTGCA
*
32534973 GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGTTATAATGCCGGTGAAATGATATCAGGCTTCA
1 GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGCTATAATGCCGGTGAAATGATATCAGGCTTCA
32535038 AGCCTAGCAGGC
66 AGCCTAGCAGGC
32535050 GAAATGTCGA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
85 71 0.99
86 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.25
Consensus pattern (85 bp):
GGTGAGATAATATCAGGCTTCGAGCCTAGCTAGCTATAATGCCGGTGAAATGATATCAGGCTTCA
AGCCTAGCAGGCTTCGTGCA
Found at i:32535043 original size:128 final size:125
Alignment explanation
Indices: 32534861--32535103 Score: 310
Period size: 128 Copynumber: 1.9 Consensus size: 125
32534851 AATATTATAG
* * * * *
32534861 GGCTTCGGGCCAGCAGGTTATAATACCGGTGAGATAATATCGGGCTTCGAGCCTAGCAGGCTATA
1 GGCTTCGAGCCAGCAGGTTATAATACCGGTGAAATAATATCAGGCTTCAAGCCTAGCAGGCGA-A
* * * *
32534926 ATGCCGGTGAAATGA-TATCGGGCTTCAAGTCTAGCAGGCTTCGTGCAGGTGAGATAATATCA
65 ATGCCGATG-AATGAGT-TCAGACTTAAAGTCTAGCAGGCTTCGTGCAGGTGAGATAATATCA
* *
32534988 GGCTTCGAGCCTAGCTA-GTTATAATGCCGGTGAAATGATATCAGGCTTCAAGCCTAGCAGGCGA
1 GGCTTCGAGCC-AGC-AGGTTATAATACCGGTGAAATAATATCAGGCTTCAAGCCTAGCAGGCGA
* *
32535052 AATGTCGATGAATGAGTTCAGACTTAAAGTCTAGCAGGCTTCGTGCCGGTGA
64 AATGCCGATGAATGAGTTCAGACTTAAAGTCTAGCAGGCTTCGTGCAGGTGA
32535104 TGAATTCAGG
Statistics
Matches: 100, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
126 36 0.36
127 19 0.19
128 44 0.44
129 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (125 bp):
GGCTTCGAGCCAGCAGGTTATAATACCGGTGAAATAATATCAGGCTTCAAGCCTAGCAGGCGAAA
TGCCGATGAATGAGTTCAGACTTAAAGTCTAGCAGGCTTCGTGCAGGTGAGATAATATCA
Found at i:32542686 original size:40 final size:39
Alignment explanation
Indices: 32542602--32542786 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 39
32542592 TCGAATGATG
* * * *
32542602 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* *
32542642 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
32542682 TCCGGGCTAAG-CTCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTC-CGAAGGCATTTGTGCGAGTTACTAAA
*
32542721 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
32542762 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
32542787 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 34 0.27
40 80 0.63
41 11 0.09
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32542808 original size:79 final size:79
Alignment explanation
Indices: 32542655--32542819 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
32542645 GGACTAAGAT
* * **
32542655 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCTCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
32542720 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
32542734 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
32542797 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
32542813 CCGAAGG
1 CCGAAGG
32542820 TACGTGATTC
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.66
80 23 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:32550802 original size:40 final size:40
Alignment explanation
Indices: 32550719--32550904 Score: 252
Period size: 40 Copynumber: 4.7 Consensus size: 40
32550709 TCGAATGATG
* * * *
32550719 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
32550759 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32550799 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
32550839 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
32550880 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
32550905 AACGAGTAGC
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 1 0.01
40 122 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:32550911 original size:80 final size:79
Alignment explanation
Indices: 32550772--32550937 Score: 228
Period size: 80 Copynumber: 2.1 Consensus size: 79
32550762 GGACTAAGAT
* **
32550772 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
1 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAG-TAGCT
*
32550836 AAATCCGGGTTAAGTC
65 AAATCC-GGTTAAATC
*
32550852 CCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATGTCCCGAAGGCATTTGAACGAGTAGCT
1 CCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCT
* *
32550916 ATATCCGGTTAAATT
65 AAATCCGGTTAAATC
32550931 CCGAAGG
1 CCGAAGG
32550938 TACGTGATTC
Statistics
Matches: 77, Mismatches: 7, Indels: 5
0.87 0.08 0.06
Matches are distributed among these distances:
79 16 0.21
80 59 0.77
81 2 0.03
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTAGCTA
AATCCGGTTAAATC
Found at i:32555160 original size:14 final size:14
Alignment explanation
Indices: 32555141--32555176 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
32555131 ACTTGCACCG
*
32555141 CTTGCACATTACAA
1 CTTGCACATCACAA
*
32555155 CTTGCAAATCACAA
1 CTTGCACATCACAA
32555169 CTTGCACA
1 CTTGCACA
32555177 ATTAGGCAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.31, G:0.08, T:0.25
Consensus pattern (14 bp):
CTTGCACATCACAA
Found at i:32559641 original size:21 final size:21
Alignment explanation
Indices: 32559569--32559641 Score: 65
Period size: 21 Copynumber: 3.5 Consensus size: 21
32559559 TACACGGTTA
* *
32559569 TGTGACTGAAAAACACGCCCG
1 TGTGACTGAGAAACACACCCG
* * * *
32559590 TGTAACTGAGATACATAGCCG
1 TGTGACTGAGAAACACACCCG
** *
32559611 TGTGGTTGAGAGACACACCCG
1 TGTGACTGAGAAACACACCCG
32559632 TGTGACTGAG
1 TGTGACTGAG
32559642 GTACACGACC
Statistics
Matches: 38, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.21
Consensus pattern (21 bp):
TGTGACTGAGAAACACACCCG
Found at i:32561529 original size:41 final size:40
Alignment explanation
Indices: 32561484--32561617 Score: 141
Period size: 40 Copynumber: 3.4 Consensus size: 40
32561474 AACTTCGAGT
*
32561484 CGATGAGGCACTGGGTGTCACATTATTACTTCGAATTAATT
1 CGATGAGGCACTGGGTGTCACATTATTACTTCGAATT-ATC
* * ** *
32561525 CGATGAGGCACT-GGTG-C-CAAT-TTACTTTGGTTTAGC
1 CGATGAGGCACTGGGTGTCACATTATTACTTCGAATTATC
* * *
32561561 CGATGAGACACTGAGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGGCACTGGGTGTCACATTATTACTTCGAATTATC
*
32561601 CGATGAGGCACTAGGTG
1 CGATGAGGCACTGGGTG
32561618 CCAAACTAGT
Statistics
Matches: 72, Mismatches: 17, Indels: 9
0.73 0.17 0.09
Matches are distributed among these distances:
36 12 0.17
37 12 0.17
38 4 0.06
39 3 0.04
40 29 0.40
41 12 0.17
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (40 bp):
CGATGAGGCACTGGGTGTCACATTATTACTTCGAATTATC
Found at i:32566107 original size:19 final size:19
Alignment explanation
Indices: 32566083--32566120 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
32566073 TGGGCCTCAA
32566083 TGGGCCGAAATGGGC-CGTG
1 TGGGCC-AAATGGGCTCGTG
*
32566102 TGGGCCCAATGGGCTCGTG
1 TGGGCCAAATGGGCTCGTG
32566121 GGCCCACACG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.13, C:0.24, G:0.45, T:0.18
Consensus pattern (19 bp):
TGGGCCAAATGGGCTCGTG
Found at i:32566421 original size:54 final size:54
Alignment explanation
Indices: 32566336--32566443 Score: 164
Period size: 54 Copynumber: 2.0 Consensus size: 54
32566326 TCGTTATATA
**
32566336 ACCGTAATGCCCCTGTAGAGTAAAATAACCATAATGGCCCTGTA-GAGTAAAATG
1 ACCGTAATGCCCCTGTAGAGTAAAATAACCATAATACCCCTGTATG-GTAAAATG
* *
32566390 ACCGTAATGCCCCTGTAGGGTAAAATGACCATAATACCCCTGTATGGTAAAATG
1 ACCGTAATGCCCCTGTAGAGTAAAATAACCATAATACCCCTGTATGGTAAAATG
32566444 TCAGTTATGC
Statistics
Matches: 49, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
54 48 0.98
55 1 0.02
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.23
Consensus pattern (54 bp):
ACCGTAATGCCCCTGTAGAGTAAAATAACCATAATACCCCTGTATGGTAAAATG
Found at i:32566443 original size:27 final size:27
Alignment explanation
Indices: 32566340--32566443 Score: 147
Period size: 27 Copynumber: 3.9 Consensus size: 27
32566330 TATATAACCG
*
32566340 TAATGCCCCTGTAGAGTAAAATAACCA
1 TAATGCCCCTGTAGAGTAAAATGACCA
* *
32566367 TAATGGCCCTGTAGAGTAAAATGACCG
1 TAATGCCCCTGTAGAGTAAAATGACCA
*
32566394 TAATGCCCCTGTAGGGTAAAATGACCA
1 TAATGCCCCTGTAGAGTAAAATGACCA
*
32566421 TAATACCCCTGTATG-GTAAAATG
1 TAATGCCCCTGTA-GAGTAAAATG
32566444 TCAGTTATGC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
27 68 0.99
28 1 0.01
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (27 bp):
TAATGCCCCTGTAGAGTAAAATGACCA
Found at i:32566454 original size:54 final size:54
Alignment explanation
Indices: 32566339--32566455 Score: 155
Period size: 54 Copynumber: 2.2 Consensus size: 54
32566329 TTATATAACC
** *
32566339 GTAATGCCCCTGTAGAGTAAAATAACCATAATGGCCCTGTAGAGTAAAATGACC
1 GTAATGCCCCTGTAGAGTAAAATAACCATAATACCCCTGTAGAGTAAAATGACA
* * *
32566393 GTAATGCCCCTGTAGGGTAAAATGACCATAATACCCCTGTATG-GTAAAATGTCA
1 GTAATGCCCCTGTAGAGTAAAATAACCATAATACCCCTGTA-GAGTAAAATGACA
*
32566447 GTTATGCCC
1 GTAATGCCC
32566456 TTATGTTCCG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
54 54 0.98
55 1 0.02
ACGTcount: A:0.33, C:0.21, G:0.21, T:0.25
Consensus pattern (54 bp):
GTAATGCCCCTGTAGAGTAAAATAACCATAATACCCCTGTAGAGTAAAATGACA
Found at i:32566624 original size:27 final size:27
Alignment explanation
Indices: 32566585--32566666 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
32566575 GGAAGTTCTG
* * *
32566585 TACTGGTGACTATGTCACATTTACTGT
1 TACTGGTGGCTATGCCACATTTACTGA
* *
32566612 TACTGGAGGCTATGCCATATTTACTGA
1 TACTGGTGGCTATGCCACATTTACTGA
*
32566639 TACTGGTGGCT-TAGCCACATATA-TGA
1 TACTGGTGGCTAT-GCCACATTTACTGA
32566665 TA
1 TA
32566667 TTGATTTATC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 6 0.13
27 40 0.87
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTATGCCACATTTACTGA
Found at i:32569814 original size:43 final size:43
Alignment explanation
Indices: 32569694--32569852 Score: 155
Period size: 43 Copynumber: 3.7 Consensus size: 43
32569684 ATCTCGTACA
*
32569694 ATGCTAACGTCCCAGACGTGGTCTTACATGT-AATCAAACATCG
1 ATGC-AACGTCCCAGACGTGGTCTTACACGTAAATCAAACATCG
* ** *
32569737 ATGCCACTGTCCCAGACAAGGTCTTACACG-AAATCAAATAT-G
1 ATGCAAC-GTCCCAGACGTGGTCTTACACGTAAATCAAACATCG
* * *
32569779 ATGTCAACGTCCCAAACGTGGTCTTACACGTAAATCATAA-GTCA
1 ATG-CAACGTCCCAGACGTGGTCTTACACGTAAATCA-AACATCG
* *
32569823 ATGCCAACGTCCTAGACATGGTCTTACACG
1 ATG-CAACGTCCCAGACGTGGTCTTACACG
32569853 ATAACACATA
Statistics
Matches: 95, Mismatches: 15, Indels: 11
0.79 0.12 0.09
Matches are distributed among these distances:
42 25 0.26
43 42 0.44
44 28 0.29
ACGTcount: A:0.32, C:0.26, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCAACGTCCCAGACGTGGTCTTACACGTAAATCAAACATCG
Found at i:32580353 original size:42 final size:43
Alignment explanation
Indices: 32580253--32580365 Score: 151
Period size: 43 Copynumber: 2.7 Consensus size: 43
32580243 ATCTCGTACA
* *
32580253 ATGCCAACATCCCAGACGTGGTCTTACATGTAATCAAACATTG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAACATTG
*
32580296 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGAAATCAAATA-TG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATCAAACATTG
*
32580338 ATGCCAACGTCCCAGACGTAGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
32580366 CAATAACACA
Statistics
Matches: 62, Mismatches: 4, Indels: 9
0.83 0.05 0.12
Matches are distributed among these distances:
41 1 0.02
42 26 0.42
43 34 0.55
44 1 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAAACATTG
Found at i:32583722 original size:31 final size:32
Alignment explanation
Indices: 32583656--32583783 Score: 114
Period size: 31 Copynumber: 4.2 Consensus size: 32
32583646 AATAATATAC
* *
32583656 ATATATTTAA-T-AATAAATTAA-ACTTACT-T
1 ATATATTTAAGTAAATATATTAATA-TTATTAT
32583685 AT-TATTTAAGTAAATATATT-ATATTATTAT
1 ATATATTTAAGTAAATATATTAATATTATTAT
* * *
32583715 ATATATTTAA-T-AATAAATTAAAACTTACT-T
1 ATATATTTAAGTAAATATATTAATA-TTATTAT
32583745 AT-TATTTAAGTAAATATATTAATATTATTAT
1 ATATATTTAAGTAAATATATTAATATTATTAT
32583776 ATTATATT
1 A-TATATT
32583784 ATTATAATTA
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
28 7 0.09
29 22 0.28
30 22 0.28
31 23 0.29
32 1 0.01
33 4 0.05
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (32 bp):
ATATATTTAAGTAAATATATTAATATTATTAT
Found at i:32583724 original size:59 final size:61
Alignment explanation
Indices: 32583656--32583783 Score: 233
Period size: 60 Copynumber: 2.1 Consensus size: 61
32583646 AATAATATAC
32583656 ATATATTTAATAATAAATT-AAACTTACTTATTATTTAAGTAAATATATT-ATATTATTAT
1 ATATATTTAATAATAAATTAAAACTTACTTATTATTTAAGTAAATATATTAATATTATTAT
32583715 ATATATTTAATAATAAATTAAAACTTACTTATTATTTAAGTAAATATATTAATATTATTAT
1 ATATATTTAATAATAAATTAAAACTTACTTATTATTTAAGTAAATATATTAATATTATTAT
32583776 ATTATATT
1 A-TATATT
32583784 ATTATAATTA
Statistics
Matches: 66, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
59 19 0.29
60 30 0.45
61 11 0.17
62 6 0.09
ACGTcount: A:0.46, C:0.03, G:0.02, T:0.49
Consensus pattern (61 bp):
ATATATTTAATAATAAATTAAAACTTACTTATTATTTAAGTAAATATATTAATATTATTAT
Found at i:32588889 original size:30 final size:30
Alignment explanation
Indices: 32588855--32588926 Score: 101
Period size: 29 Copynumber: 2.4 Consensus size: 30
32588845 TGAAGCTATC
32588855 CCTTTTTCATAATTTGATGGTCATCACAAT
1 CCTTTTTCATAATTTGATGGTCATCACAAT
* * *
32588885 CCTTTTTCAT-AGTTGATGGTCGTCACCAT
1 CCTTTTTCATAATTTGATGGTCATCACAAT
*
32588914 CCCTTTTCATAAT
1 CCTTTTTCATAAT
32588927 CGAGAACAGA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
29 25 0.69
30 11 0.31
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.43
Consensus pattern (30 bp):
CCTTTTTCATAATTTGATGGTCATCACAAT
Found at i:32590217 original size:17 final size:17
Alignment explanation
Indices: 32590180--32590234 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
32590170 TAAAATGTAT
**
32590180 AAATATAATATATAA-A
1 AAATATAATATGGAATA
* *
32590196 AAATATCATATGGAGTA
1 AAATATAATATGGAATA
*
32590213 AAATATAATATGTAATA
1 AAATATAATATGGAATA
32590230 AAATA
1 AAATA
32590235 ATATGAAAAC
Statistics
Matches: 31, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 11 0.35
17 20 0.65
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (17 bp):
AAATATAATATGGAATA
Found at i:32590237 original size:15 final size:15
Alignment explanation
Indices: 32590152--32590253 Score: 59
Period size: 15 Copynumber: 6.7 Consensus size: 15
32590142 TATGATAAAC
*
32590152 AAAATAATATAT-AT
1 AAAATAATATGTAAT
* *
32590166 ATAATAAAATGT-AT
1 AAAATAATATGTAAT
*
32590180 AAATATAATATATAA-
1 AAA-ATAATATGTAAT
* *
32590195 AAAATATCATATGGAGT
1 AAAATA--ATATGTAAT
32590212 AAAATATAATATGTAAT
1 -AAA-ATAATATGTAAT
*
32590229 AAAATAATATG-AAA
1 AAAATAATATGTAAT
32590243 ACAAATAATAT
1 A-AAATAATAT
32590254 ATAAATATAG
Statistics
Matches: 68, Mismatches: 12, Indels: 15
0.72 0.13 0.16
Matches are distributed among these distances:
14 19 0.28
15 27 0.40
16 9 0.13
17 7 0.10
18 3 0.04
19 3 0.04
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (15 bp):
AAAATAATATGTAAT
Found at i:32592219 original size:44 final size:44
Alignment explanation
Indices: 32592137--32593225 Score: 575
Period size: 44 Copynumber: 24.9 Consensus size: 44
32592127 CATGCTGATA
* * * * **
32592137 CTTCTATCTGCTCTCTGTCGAACACAAAGATGCCAAATCTA-CTAT
1 CTTCGATCTGCTCTCTGAC-AATACAGAGACACCAAATC-AGCTAT
* *
32592182 CTTCGATCTACTCTCTGACAATGCAGAGACACCAAATCTA-CTAT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATC-AGCTAT
* * *
32592226 CTTCGATCTGCTCTCTAACAATACAGAGACGCCAAATCATCTAT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
*
32592270 CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTAT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
*
32592314 GTTTCGATCTGCTCTCTGACAATACAGAGACACCAAAT---C-AT
1 -CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* * * * *
32592355 CTTAGATTTGCT-TC-AACGTAAATAC-GTGATAGCCAAATCAGCTATAT
1 CTTCGATCTGCTCTCTGAC---AATACAGAGACA-CCAAATCAGC--TAT
* *
32592402 CTTCGATCTGCTCTCTGACGATACAGAGACGCCAAAT---C-AT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
** * * * * *
32592442 CTTAAATTTGCT-TC-AACATAAACACGTGAAAGCCAAATCAGCTAATT
1 CTTCGATCTGCTCTCTGACA-ATACA-GAGACA-CCAAATCAGCT-A-T
* *
32592489 CTTCGATCTGCTCTTTGACAATATAGAGACACCAAAT---C-AT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* * * * *
32592529 CTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGCTAATT
1 CTTCGATCTGCTCTCTGAC--AATACA-GAGACA-CCAAATCAGCT-A-T
* *
32592576 CTTCGATCTGCTCTTTGACAATATAGAGACACCAAAT---C-AT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* * * * *
32592616 CTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGCTAATT
1 CTTCGATCTGCTCTCTGAC--AATACA-GAGACA-CCAAATCAGCT-A-T
* *
32592663 CTTCGATCTGCTCTTTGACAATATAGAGACACCAAAT---C-AT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* * * * *
32592703 CTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGCTAATT
1 CTTCGATCTGCTCTCTGAC--AATACA-GAGACA-CCAAATCAGCT-A-T
* *
32592750 CTTCGATCTGCTCTTTGACAATATAGAGACACCAAAT---C-AT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* * * * * *
32592790 CTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCTAAATCAGCTATGT
1 CTTCGATCTGCTCTCTGAC--AATACA-GAGACA-CCAAATCAGCTA--T
* * * *
32592837 CATCGATCTGCTCTTTGACAATACAGAGACGCCAAATCATCT-T
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* *
32592880 ACTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTAT
1 -CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* *
32592925 CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTAT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* *
32592969 CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTAT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
*
32593013 CTTCGATCTGCTCTCTGACAATACAGAGACGCCAAAT---C-AT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* * * * *
32593053 CTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGCTAATT
1 CTTCGATCTGCTCTCTGAC--AATACA-GAGACA-CCAAATCAGCT-A-T
* *
32593100 CTTCGATCTGCTCTTTGACAATATAGAGACACCAAAT---C-AT
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
* * * * *
32593140 CTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGCTAATT
1 CTTCGATCTGCTCTCTGAC--AATACA-GAGACA-CCAAATCAGCT-A-T
* *
32593187 CTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCA
1 CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCA
32593226 TCTTAGATTT
Statistics
Matches: 802, Mismatches: 136, Indels: 211
0.70 0.12 0.18
Matches are distributed among these distances:
38 16 0.02
39 28 0.03
40 129 0.16
41 60 0.07
42 1 0.00
43 8 0.01
44 273 0.34
45 53 0.07
46 63 0.08
47 129 0.16
48 25 0.03
49 17 0.02
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (44 bp):
CTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCAGCTAT
Found at i:32592270 original size:88 final size:89
Alignment explanation
Indices: 32592168--32593054 Score: 446
Period size: 87 Copynumber: 10.1 Consensus size: 89
32592158 ACACAAAGAT
*
32592168 GCCAAATC-TACTATCTTCGATCTACTCTCTGACAATGCAGAGACACCAAATCTA-CTAT-CTTC
1 GCCAAATCAT-CTATCTTCGATCTACTCTCTGACAATACAGAGACACCAAATC-AGCTATGCTTC
32592230 GATCTGCTCTCTAACAATACAGAGAC
64 GATCTGCTCTCTAACAATACAGAGAC
* * *
32592256 GCCAAATCATCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCAGCTATGTTTCGA
1 GCCAAATCATCTATCTTCGATCTACTCTCTGACAATACAGAGACACCAAATCAGCTATGCTTCGA
*
32592321 TCTGCTCTCTGACAATACAGAGAC
66 TCTGCTCTCTAACAATACAGAGAC
* * * * * * * *
32592345 ACC-AA--ATC-ATCTTAGATTTGCT-TC-AACGTAAATAC-GTGATAGCCAAATCAGCTATATC
1 GCCAAATCATCTATCTTCGATCTACTCTCTGAC---AATACAGAGACA-CCAAATCAGCTAT-GC
* *
32592403 TTCGATCTGCTCTCTGACGATACAGAGAC
61 TTCGATCTGCTCTCTAACAATACAGAGAC
** * * * * * * *
32592432 GCC-AA--ATC-ATCTTAAATTTGCT-TC-AACATAAACACGTGAAAGCCAAATCAGCTAATTCT
1 GCCAAATCATCTATCTTCGATCTACTCTCTGACA-ATACA-GAGACA-CCAAATCAGCT-ATGCT
* * *
32592491 TCGATCTGCTCTTTGACAATATAGAGAC
62 TCGATCTGCTCTCTAACAATACAGAGAC
* * * * * * * *
32592519 ACC-AA--ATC-ATCTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGCTAATTC
1 GCCAAATCATCTATCTTCGATCTACTCTCTGAC--AATACA-GAGACA-CCAAATCAGCT-ATGC
* * *
32592577 TTCGATCTGCTCTTTGACAATATAGAGAC
61 TTCGATCTGCTCTCTAACAATACAGAGAC
* * * * * * * *
32592606 ACC-AA--ATC-ATCTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGCTAATTC
1 GCCAAATCATCTATCTTCGATCTACTCTCTGAC--AATACA-GAGACA-CCAAATCAGCT-ATGC
* * *
32592664 TTCGATCTGCTCTTTGACAATATAGAGAC
61 TTCGATCTGCTCTCTAACAATACAGAGAC
* * * * * * * *
32592693 ACC-AA--ATC-ATCTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCCAAATCAGCTAATTC
1 GCCAAATCATCTATCTTCGATCTACTCTCTGAC--AATACA-GAGACA-CCAAATCAGCT-ATGC
* * *
32592751 TTCGATCTGCTCTTTGACAATATAGAGAC
61 TTCGATCTGCTCTCTAACAATACAGAGAC
* * * * * * * *
32592780 ACC-AA--ATC-ATCTTAGATTTGCT-TC-AACGTAA-ACACGTGAAAGCTAAATCAGCTATGTC
1 GCCAAATCATCTATCTTCGATCTACTCTCTGAC--AATACA-GAGACA-CCAAATCAGCTATG-C
* * *
32592838 ATCGATCTGCTCTTTGACAATACAGAGAC
61 TTCGATCTGCTCTCTAACAATACAGAGAC
* * *
32592867 GCCAAATCATCT-TACTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTAT-CTTCG
1 GCCAAATCATCTAT-CTTCGATCTACTCTCTGACAATACAGAGACACCAAATCAGCTATGCTTCG
*
32592930 ATCTGCTCTCTGACAATACAGAGAC
65 ATCTGCTCTCTAACAATACAGAGAC
* * *
32592955 GCCAAATCATCTATCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTAT-CTTCGA
1 GCCAAATCATCTATCTTCGATCTACTCTCTGACAATACAGAGACACCAAATCAGCTATGCTTCGA
*
32593019 TCTGCTCTCTGACAATACAGAGAC
66 TCTGCTCTCTAACAATACAGAGAC
32593043 GCCAAATCATCT
1 GCCAAATCATCT
32593055 TAGATTTGCT
Statistics
Matches: 736, Mismatches: 39, Indels: 48
0.89 0.05 0.06
Matches are distributed among these distances:
83 2 0.00
84 3 0.00
85 18 0.02
86 23 0.03
87 436 0.59
88 184 0.25
89 33 0.04
90 15 0.02
91 15 0.02
92 5 0.01
93 2 0.00
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.28
Consensus pattern (89 bp):
GCCAAATCATCTATCTTCGATCTACTCTCTGACAATACAGAGACACCAAATCAGCTATGCTTCGA
TCTGCTCTCTAACAATACAGAGAC
Found at i:32592427 original size:87 final size:87
Alignment explanation
Indices: 32592300--32593286 Score: 1396
Period size: 87 Copynumber: 11.3 Consensus size: 87
32592290 ATACAGAGAC
*
32592300 GCCAAATCAGCT-ATGT-TTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATT
1 GCCAAATCAGCTAAT-TCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATT
* *
32592363 TGCTTCAACGTAAATACGTGATA
65 TGCTTCAACGTAAACACGTGAAA
* * * *
32592386 GCCAAATCAGCT-ATATCTTCGATCTGCTCTCTGACGATACAGAGACGCCAAATCATCTTAAATT
1 GCCAAATCAGCTAAT-TCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATT
*
32592450 TGCTTCAACATAAACACGTGAAA
65 TGCTTCAACGTAAACACGTGAAA
*
32592473 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATTT
32592538 GCTTCAACGTAAACACGTGAAA
66 GCTTCAACGTAAACACGTGAAA
*
32592560 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATTT
32592625 GCTTCAACGTAAACACGTGAAA
66 GCTTCAACGTAAACACGTGAAA
*
32592647 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATTT
32592712 GCTTCAACGTAAACACGTGAAA
66 GCTTCAACGTAAACACGTGAAA
*
32592734 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATTT
32592799 GCTTCAACGTAAACACGTGAAA
66 GCTTCAACGTAAACACGTGAAA
* * *
32592821 GCTAAATCAGCT-ATGTCATCGATCTGCTCTTTGACAATACAGAGACGCCAAATCATCTTACTTC
1 GCCAAATCAGCTAAT-TCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTA----
* * * *
32592885 GATCTGCTCTCTGAC--AATACA-GAG-AC
61 GATTTGCT-TC-AACGTAA-ACACGTGAAA
* * * *
32592911 GCCAAATCATCT-A-TCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTATCTTCG
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATACAGAGACACC-AA--ATC-ATCTTAG
* * * *
32592974 ATCTGCTCTCTGAC--AATACA-GAG-AC
62 ATTTGCT-TC-AACGTAA-ACACGTGAAA
* * *
32592999 GCCAAATCATCT-A-TCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTTAGATTT
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATTT
32593062 GCTTCAACGTAAACACGTGAAA
66 GCTTCAACGTAAACACGTGAAA
*
32593084 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATTT
32593149 GCTTCAACGTAAACACGTGAAA
66 GCTTCAACGTAAACACGTGAAA
*
32593171 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATTT
32593236 GCTTCAACGTAAACACGTGAAA
66 GCTTCAACGTAAACACGTGAAA
*
32593258 GCCAAATCAGCT-ATATCTCCGATCTGCTC
1 GCCAAATCAGCTAAT-TCTTCGATCTGCTC
32593287 CCTGTCGAAT
Statistics
Matches: 844, Mismatches: 36, Indels: 41
0.92 0.04 0.04
Matches are distributed among these distances:
82 2 0.00
83 5 0.01
84 16 0.02
85 15 0.02
86 20 0.02
87 639 0.76
88 107 0.13
89 2 0.00
90 12 0.01
91 14 0.02
92 10 0.01
93 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (87 bp):
GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATACAGAGACACCAAATCATCTTAGATTT
GCTTCAACGTAAACACGTGAAA
Found at i:32593088 original size:41 final size:41
Alignment explanation
Indices: 32593043--32593266 Score: 104
Period size: 40 Copynumber: 5.2 Consensus size: 41
32593033 ATACAGAGAC
32593043 GCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
1 GCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
* * ** * * *
32593084 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGAC--AATATA-GAGACA
1 GCCAAAT---C--A-TCTTAGATTTG--CTTCAACGTAA-ACACGTGAAA
32593131 -CCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
1 GCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
* * ** * * *
32593171 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGAC--AATATA-GAGACA
1 GCCAAAT---C--A-TCTTAGATTTG--CTTCAACGTAA-ACACGTGAAA
32593218 -CCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
1 GCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
32593258 GCCAAATCA
1 GCCAAATCA
32593267 GCTATATCTC
Statistics
Matches: 129, Mismatches: 28, Indels: 52
0.62 0.13 0.25
Matches are distributed among these distances:
38 10 0.08
39 4 0.03
40 30 0.23
41 23 0.18
43 2 0.02
44 2 0.02
46 14 0.11
47 30 0.23
48 4 0.03
49 10 0.08
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (41 bp):
GCCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
Found at i:32593100 original size:437 final size:435
Alignment explanation
Indices: 32592300--32593355 Score: 1539
Period size: 437 Copynumber: 2.4 Consensus size: 435
32592290 ATACAGAGAC
* *
32592300 GCCAAATCAGCT-ATGT-TTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATT
1 GCCAAATCAGCTAAT-TCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATT
* * *
32592363 TGCTTCAACGTAAATACGTGATAGCCAAATCAGCTATATCTTCGATCTGCTCTCTGACGATACAG
65 TGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATATC-TCGATCTGCTCTCTGACAATACAG
* * *
32592428 AGACGCCAAATCATCTTA---AATTTGCT-TC-AACATAAACACGTGAAAGCCAAATCAGCTAAT
129 AGACGCCAAATCATCTTACTCAATTTGCTCTCTGACA-ATACA-GAG-AAGCCAAATCAGCTAAT
* * *
32592488 TCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACA
191 TCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATCTGCTTCAACG-AAACA
* * *
32592553 CGTGAAAGCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCT
255 CGAGAAAGCCAAATCAGCTAATTCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCT
32592618 TAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACA
320 TAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACA
32592683 ATATAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
385 ATATAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
32592734 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
* * *
32592799 GCTTCAACGTAAACACGTGAAAGCTAAATCAGCTATGTCATCGATCTGCTCTTTGACAATACAGA
66 GCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATATC-TCGATCTGCTCTCTGACAATACAGA
* * * *
32592864 GACGCCAAATCATCTTACTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCT-A-TCT
130 GACGCCAAATCATCTTAC-TCAATTTGCTCTCTGACAATACAGAGAAGCCAAATCAGCTAATTCT
* * *
32592927 TCGATCTGCTCTCTGACAATACAGAGACGCCAAATCATCTATCTTCGATCTGCTCTCTGAC-AAT
194 TCGATCTGCTCTCTGACAATACAGAGACACC-AA--ATC-ATCTTAGATCTGCT-TC-AACGAA-
* * *
32592991 ACA-GAG-ACGCCAAATCATCT-A-TCTTCGATCTGCTCTCTGACAATACAGAGACGCCAAATCA
252 ACACGAGAAAGCCAAATCAGCTAATTCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCA
32593052 TCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTAATTCTTCGATCTGCTCTTTG
317 TCTTAGATTTGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTAATTCTTCGATCTGCTCTTTG
32593117 ACAATATAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
382 ACAATATAGAGACACCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
32593171 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
1 GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
* *
32593236 GCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATATCTCCGATCTGCTCCCTGTCGAATACAG
66 GCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATATCT-CGATCTGCTCTCTGAC-AATACAG
* * * * *
32593301 AGATGCCAAATC-TGTTTCTCCAATTTGTTCTCTGACAATACAGAGATGCCAAATC
129 AGACGCCAAATCATCTTACT-CAATTTGCTCTCTGACAATACAGAGAAGCCAAATC
32593356 TTCTTGGATC
Statistics
Matches: 564, Mismatches: 40, Indels: 33
0.89 0.06 0.05
Matches are distributed among these distances:
434 13 0.02
435 123 0.22
436 33 0.06
437 309 0.55
438 31 0.05
439 23 0.04
440 22 0.04
441 8 0.01
442 2 0.00
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (435 bp):
GCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAGAGACACCAAATCATCTTAGATTT
GCTTCAACGTAAACACGTGAAAGCCAAATCAGCTATATCTCGATCTGCTCTCTGACAATACAGAG
ACGCCAAATCATCTTACTCAATTTGCTCTCTGACAATACAGAGAAGCCAAATCAGCTAATTCTTC
GATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATCTGCTTCAACGAAACACGAGAA
AGCCAAATCAGCTAATTCTTCGATCTGCTCTCTGACAATACAGAGACACCAAATCATCTTAGATT
TGCTTCAACGTAAACACGTGAAAGCCAAATCAGCTAATTCTTCGATCTGCTCTTTGACAATATAG
AGACACCAAATCATCTTAGATTTGCTTCAACGTAAACACGTGAAA
Found at i:32605620 original size:9 final size:9
Alignment explanation
Indices: 32605606--32605631 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32605596 TTTTTACAGC
32605606 TTTGGGCCT
1 TTTGGGCCT
32605615 TTTGGGCCT
1 TTTGGGCCT
32605624 TTTGGGCC
1 TTTGGGCC
32605632 CCGTGTAAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.00, C:0.23, G:0.35, T:0.42
Consensus pattern (9 bp):
TTTGGGCCT
Found at i:32612344 original size:88 final size:88
Alignment explanation
Indices: 32612179--32612345 Score: 230
Period size: 89 Copynumber: 1.9 Consensus size: 88
32612169 CCCCTCAAAC
** ** *
32612179 TTTTTTCAAAAAAGCAATTAAGTTCATTTTTTTTTTTTCACTCAATTAGGAACTTGAACTTTCAA
1 TTTTTTCAAAAAAGCAATTAAGCCCATGATTTTTTTTGCACTCAATTAGGAACTTGAACTTTCAA
*
32612244 AATGCATTAAAAAGACTCTCAAT
66 AATGCATCAAAAAGACTCTCAAT
* *
32612267 TTTTTTCAAAAAAAGCAATTAAGCCCATGATTTTTTTTGCACTCAATTAGGTATTTGAA-TTGT-
1 TTTTTTC-AAAAAAGCAATTAAGCCCATGATTTTTTTTGCACTCAATTAGGAACTTGAACTT-TC
32612330 AAAATGCATCAAAAAG
64 AAAATGCATCAAAAAG
32612346 GCTATTTAAC
Statistics
Matches: 69, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
88 24 0.35
89 45 0.65
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (88 bp):
TTTTTTCAAAAAAGCAATTAAGCCCATGATTTTTTTTGCACTCAATTAGGAACTTGAACTTTCAA
AATGCATCAAAAAGACTCTCAAT
Found at i:32612580 original size:20 final size:20
Alignment explanation
Indices: 32612543--32612581 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
32612533 TTGTAAAATT
*
32612543 TTATAAAAATCATTAAAAAA
1 TTATAAAAATCATCAAAAAA
32612563 TTAT-AAAATACATCAAAAA
1 TTATAAAAAT-CATCAAAAA
32612582 GACTCTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (20 bp):
TTATAAAAATCATCAAAAAA
Found at i:32612596 original size:19 final size:19
Alignment explanation
Indices: 32612574--32612611 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
32612564 TATAAAATAC
32612574 ATCAAAAAGACTCTTTAAT
1 ATCAAAAAGACTCTTTAAT
32612593 ATCAAAAAGACTCTTTAAT
1 ATCAAAAAGACTCTTTAAT
32612612 CATTAACTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.32
Consensus pattern (19 bp):
ATCAAAAAGACTCTTTAAT
Found at i:32612919 original size:12 final size:10
Alignment explanation
Indices: 32612770--32612919 Score: 55
Period size: 10 Copynumber: 14.9 Consensus size: 10
32612760 TTTTAGTACG
32612770 ATAA-TTTTT
1 ATAATTTTTT
32612779 ATAATTTTTTT
1 ATAA-TTTTTT
32612790 ATGAA--TTTT
1 AT-AATTTTTT
32612799 AT-ATTTCTTT
1 ATAATTT-TTT
*
32612809 A-CATTTTTT
1 ATAATTTTTT
32612818 ATAATTTTCTT
1 ATAATTTT-TT
** * *
32612829 AGGACTTTAT
1 ATAATTTTTT
* *
32612839 AAAATTTTAT
1 ATAATTTTTT
32612849 A-AATTTTTT
1 ATAATTTTTT
* *
32612858 CT-ATATTTCT
1 ATAAT-TTTTT
*
32612868 AT-ATATTTT
1 ATAATTTTTT
32612877 ATAAATTTTCTT
1 AT-AATTTT-TT
* *
32612889 TTACTATTTTT
1 ATAAT-TTTTT
32612900 ATAATTTTTT
1 ATAATTTTTT
32612910 ATATATTTTT
1 ATA-ATTTTT
32612920 ATTAAAATTT
Statistics
Matches: 106, Mismatches: 19, Indels: 30
0.68 0.12 0.19
Matches are distributed among these distances:
7 1 0.01
9 29 0.27
10 37 0.35
11 31 0.29
12 8 0.08
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.63
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:32612929 original size:23 final size:22
Alignment explanation
Indices: 32612863--32612921 Score: 72
Period size: 20 Copynumber: 2.8 Consensus size: 22
32612853 TTTTTCTATA
32612863 TTTC-TATATA-TTTTATAAAT
1 TTTCTTATATATTTTTATAAAT
*
32612883 TTTCTTTTACTATTTTTAT-AAT
1 TTTCTTATA-TATTTTTATAAAT
32612905 TTT-TTATATATTTTTAT
1 TTTCTTATATATTTTTAT
32612922 TAAAATTTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
20 13 0.38
21 7 0.21
22 8 0.24
23 6 0.18
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.68
Consensus pattern (22 bp):
TTTCTTATATATTTTTATAAAT
Found at i:32612949 original size:19 final size:18
Alignment explanation
Indices: 32612887--32612960 Score: 58
Period size: 19 Copynumber: 3.8 Consensus size: 18
32612877 ATAAATTTTC
* *
32612887 TTTTACTATTTTTATAATT
1 TTTTAATATTTTTATAA-A
32612906 TTTTATATATTTTTATTAAA
1 TTTTA-ATATTTTTA-TAAA
* *
32612926 ATTTAATCATTTTTATAAC
1 TTTTAAT-ATTTTTATAAA
*
32612945 TTTTATTGATTTTTAT
1 TTTTAAT-ATTTTTAT
32612961 TTTTTATCAT
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
19 23 0.51
20 19 0.42
21 3 0.07
ACGTcount: A:0.30, C:0.04, G:0.01, T:0.65
Consensus pattern (18 bp):
TTTTAATATTTTTATAAA
Found at i:32613579 original size:36 final size:36
Alignment explanation
Indices: 32613502--32613654 Score: 121
Period size: 36 Copynumber: 4.2 Consensus size: 36
32613492 ATAGAAATTT
* * *
32613502 GTAAATCAGAGAATTGTAAAAATGACCA-TTGCAATA
1 GTAAATTAGCGAACTGTAAAAATGA-CAGTTGCAATA
* * *
32613538 CTAAATTAGCGAACTGTAAAAATGACAGTCGCGATA
1 GTAAATTAGCGAACTGTAAAAATGACAGTTGCAATA
* * * *
32613574 ATAAATCAGTGAACTGCTAGAAAACCGA-AGGTTGCAATA
1 GTAAATTAGCGAACTG-TA-AAAA-TGACA-GTTGCAATA
* * * *
32613613 GTAAATTAGCGGACCGTAAAAATGAAAGTTGCGATA
1 GTAAATTAGCGAACTGTAAAAATGACAGTTGCAATA
32613649 GTAAAT
1 GTAAAT
32613655 CAATGAACTG
Statistics
Matches: 92, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
35 2 0.02
36 56 0.61
37 7 0.08
38 7 0.08
39 20 0.22
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (36 bp):
GTAAATTAGCGAACTGTAAAAATGACAGTTGCAATA
Found at i:32613680 original size:75 final size:75
Alignment explanation
Indices: 32613530--32613671 Score: 212
Period size: 75 Copynumber: 1.9 Consensus size: 75
32613520 AAAATGACCA
* * * *
32613530 TTGCAATACTAAATTAGCGAACTGTAAAAATGACAGTCGCGATAATAAATCAGTGAACTGCTAGA
1 TTGCAATACTAAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGA
32613595 AAACCGAAGG
66 AAACCGAAGG
* * * *
32613605 TTGCAATAGTAAATTAGCGGACCGTAAAAATGAAAGTTGCGATAGTAAATCAATGAACTGATAGA
1 TTGCAATACTAAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGA
32613670 AA
66 AA
32613672 CTTGAAGGTC
Statistics
Matches: 59, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
75 59 1.00
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.23
Consensus pattern (75 bp):
TTGCAATACTAAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGA
AAACCGAAGG
Found at i:32613694 original size:75 final size:75
Alignment explanation
Indices: 32613540--32613695 Score: 188
Period size: 75 Copynumber: 2.1 Consensus size: 75
32613530 TTGCAATACT
* * * *
32613540 AAATTAGCGAACTGTAAAAATGACAGTCGCGATAATAAATCAGTGAACTGCTAGAAAACCGAAGG
1 AAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGAAAACCGAAGG
* *
32613605 TTGCAATAGT
66 TCGCAATAGA
* * * *
32613615 AAATTAGCGGACCGTAAAAATGAAAGTTGCGATAGTAAATCAATGAACTGATAG-AAACTTGAAG
1 AAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGAAAAC-CGAAG
* *
32613679 GTCGCGATCGA
65 GTCGCAATAGA
32613690 AAATTA
1 AAATTA
32613696 ATAGGTATAA
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
74 4 0.06
75 64 0.94
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.22
Consensus pattern (75 bp):
AAATTAGCGAACCGTAAAAATGAAAGTCGCGATAATAAATCAATGAACTGATAGAAAACCGAAGG
TCGCAATAGA
Found at i:32613789 original size:36 final size:35
Alignment explanation
Indices: 32613725--32614154 Score: 224
Period size: 36 Copynumber: 11.7 Consensus size: 35
32613715 AAAACCAAAG
* *
32613725 GTCGCGATGGTAAATCAGC-AGACCGTAAAAATAACA
1 GTCGCGATAGTAAATCAGCGA-ACTGTAAAAATAA-A
* *
32613761 GTCGTGATAGTAAATCAGCGAATTGT-AAAATGAAA
1 GTCGCGATAGTAAATCAGCGAACTGTAAAAAT-AAA
* * * * * *
32613796 GTCACAACAGTAAATTAGCGAACTTTAAAAATGGCAA
1 GTCGCGATAGTAAATCAGCGAACTGTAAAAAT--AAA
* * ** *
32613833 -TTGCAATAGTAAATCAATGAACTGTTAGAAAACTGAAG
1 GTCGCGATAGTAAATCAGCGAACTG-TA-AAAA-T-AAA
* *
32613871 GTCGCGATAGTAAATCAGC-AGACCGTAAAAATGACA
1 GTCGCGATAGTAAATCAGCGA-ACTGTAAAAAT-AAA
* * * *
32613907 GCCGCGATTGTAAATCAACGAATTGTAAAAATGAAA
1 GTCGCGATAGTAAATCAGCGAACTGTAAAAAT-AAA
* * *
32613943 GTCACGATAGTAAATTAGCGAACTATAAAAATGACAA
1 GTCGCGATAGTAAATCAGCGAACTGTAAAAAT-A-AA
* * * *
32613980 -TCGCAATAGGAAATCAACTAACTGTTAGAAAATCAAA
1 GTCGCGATAGTAAATCAGCGAACTG-TA-AAAAT-AAA
* * * * *
32614017 GGTCGCGATAGTAAATCAACGGATTGCAAAAATGACA
1 -GTCGCGATAGTAAATCAGCGAACTGTAAAAAT-AAA
*
32614054 GTCGCGATAGTAAATCAGCGAACTGTTAGAAAACTGAAG
1 GTCGCGATAGTAAATCAGCGAACTG-TA-AAAA-T-AAA
* * * * * *
32614093 GTCGTGATA-AAATATTAACGAATTGTAAAAATGATA
1 GTCGCGATAGTAA-ATCAGCGAACTGTAAAAAT-AAA
*
32614129 GTCGCGATAATAAATCAGCGAACTGT
1 GTCGCGATAGTAAATCAGCGAACTGT
32614155 TAGAAAATCG
Statistics
Matches: 299, Mismatches: 75, Indels: 40
0.72 0.18 0.10
Matches are distributed among these distances:
35 25 0.08
36 162 0.54
37 31 0.10
38 24 0.08
39 57 0.19
ACGTcount: A:0.43, C:0.14, G:0.20, T:0.22
Consensus pattern (35 bp):
GTCGCGATAGTAAATCAGCGAACTGTAAAAATAAA
Found at i:32613903 original size:75 final size:73
Alignment explanation
Indices: 32613722--32614170 Score: 379
Period size: 75 Copynumber: 6.1 Consensus size: 73
32613712 TAGAAAACCA
* * * * * *
32613722 AAGGTCGCGATGGTAAATCAGCAGACCGTAAAAATAACAGTCGTGATAGTAAATCAGCGAATTG-
1 AAGGTCGCGATAGTAAATCAGC-GACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
32613786 T--AAAATG
65 TAGAAAATG
* * * * * * * * * * *
32613793 AAAGTCACAACAGTAAATTAGCGAACTTTAAAAATGGCAATTGCAATAGTAAATCAATGAACTGT
1 AAGGTCGCGATAGTAAATCAGCG-ACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
32613858 TAGAAAACTG
65 TAGAAAA-TG
* * * *
32613868 AAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGCCGCGATTGTAAATCAACGAATTG-
1 AAGGTCGCGATAGTAAATCAGC-GACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
32613932 TA-AAAATG
65 TAGAAAATG
* * * * * * * *
32613940 AAAGTCACGATAGTAAATTAGCGAACTATAAAAATGACAATCGCAATAGGAAATCAACTAACTGT
1 AAGGTCGCGATAGTAAATCAGCG-ACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
*
32614005 TAGAAAATCA
65 TAGAAAAT-G
* * * *
32614015 AAGGTCGCGATAGTAAATCAACGGATTGCAAAAATGACAGTCGCGATAGTAAATCAGCGAACTGT
1 AAGGTCGCGATAGTAAATCAGC-GACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGT
32614080 TAGAAAACTG
65 TAGAAAA-TG
* * * * * * * *
32614090 AAGGTCGTGATA-AAATATTAACGAATTGTAAAAATGATAGTCGCGATAATAAATCAGCGAACTG
1 AAGGTCGCGATAGTAA-ATCAGCG-ACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTG
32614154 TTAGAAAATCG
64 TTAGAAAAT-G
32614165 AAGGTC
1 AAGGTC
32614171 ATCATCGAAA
Statistics
Matches: 299, Mismatches: 64, Indels: 26
0.77 0.16 0.07
Matches are distributed among these distances:
70 1 0.00
71 46 0.15
72 53 0.18
73 6 0.02
74 15 0.05
75 175 0.59
76 3 0.01
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (73 bp):
AAGGTCGCGATAGTAAATCAGCGACTGTAAAAATGACAGTCGCGATAGTAAATCAACGAACTGTT
AGAAAATG
Found at i:32614011 original size:147 final size:146
Alignment explanation
Indices: 32613709--32614075 Score: 522
Period size: 147 Copynumber: 2.5 Consensus size: 146
32613699 GGTATAAAAT
* * * *
32613709 TGTTAGAAAACCAAAGGTCGCGATGGTAAATCAGCAGACCGTAAAAATAACAGTCGTGATAGTAA
1 TGTTAGAAAACTAAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGTCGCGATAGTAA
* * *
32613774 ATCAGCGAATTGTAAAATGAAAGTCACAACAGTAAATTAGCGAACTTTAAAAATGGCAATTGCAA
66 ATCAGCGAATTGTAAAATGAAAGTCACAACAGTAAATTAGCGAACTATAAAAATGACAATCGCAA
*
32613839 TAGTAAATCAATGAAC
131 TAGGAAATCAATGAAC
* * *
32613855 TGTTAGAAAACTGAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGCCGCGATTGTAA
1 TGTTAGAAAACTAAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGTCGCGATAGTAA
* * *
32613920 ATCAACGAATTGTAAAAATGAAAGTCACGATAGTAAATTAGCGAACTATAAAAATGACAATCGCA
66 ATCAGCGAATTGT-AAAATGAAAGTCACAACAGTAAATTAGCGAACTATAAAAATGACAATCGCA
32613985 ATAGGAAATCAACT-AAC
130 ATAGGAAATCAA-TGAAC
* * ** *
32614002 TGTTAGAAAA-TCAAAGGTCGCGATAGTAAATCAACGGATTGCAAAAATGACAGTCGCGATAGTA
1 TGTTAGAAAACT-AAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGTCGCGATAGTA
32614066 AATCAGCGAA
65 AATCAGCGAA
32614076 CTGTTAGAAA
Statistics
Matches: 195, Mismatches: 23, Indels: 5
0.87 0.10 0.02
Matches are distributed among these distances:
146 71 0.36
147 123 0.63
148 1 0.01
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.21
Consensus pattern (146 bp):
TGTTAGAAAACTAAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGTCGCGATAGTAA
ATCAGCGAATTGTAAAATGAAAGTCACAACAGTAAATTAGCGAACTATAAAAATGACAATCGCAA
TAGGAAATCAATGAAC
Found at i:32614133 original size:111 final size:110
Alignment explanation
Indices: 32613838--32614150 Score: 303
Period size: 111 Copynumber: 2.8 Consensus size: 110
32613828 GGCAATTGCA
** * * *
32613838 ATAGTAAATCAATGAACTGTTAGAAAACTGAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAAT
1 ATAGTAAATCAGCGAACTGTTAGAAAACTGAAGGTCGCGATAGAAAATCAACA-ACTGTAAAAAT
* * * *
32613903 GACAGCCGCGATTGTAAATCAACGAATTGTAAAAATGAAAGTCACG
65 GAAAGTCGCGATAGTAAATCAACGAATTGCAAAAATGAAAGTCACG
* * * * *
32613949 ATAGTAAATTAGCGAACT-ATA-AAAA-TGACA-ATCGCAATAGGAAATCAACTAACTGTTAGAA
1 ATAGTAAATCAGCGAACTGTTAGAAAACTGA-AGGTCGCGATAGAAAATCAAC-AACTG-TA-AA
* * * *
32614010 AATCAAAGGTCGCGATAGTAAATCAACGGATTGCAAAAATGACAGTCGCG
62 AATGAAA-GTCGCGATAGTAAATCAACGAATTGCAAAAATGAAAGTCACG
* * *
32614060 ATAGTAAATCAGCGAACTGTTAGAAAACTGAAGGTCGTGATA-AAATATTAACGAATTGTAAAAA
1 ATAGTAAATCAGCGAACTGTTAGAAAACTGAAGGTCGCGATAGAAA-ATCAAC-AACTGTAAAAA
* * *
32614124 TGATAGTCGCGATAATAAATCAGCGAA
64 TGAAAGTCGCGATAGTAAATCAACGAA
32614151 CTGTTAGAAA
Statistics
Matches: 161, Mismatches: 31, Indels: 20
0.76 0.15 0.09
Matches are distributed among these distances:
108 21 0.13
109 8 0.05
110 9 0.06
111 87 0.54
112 9 0.06
113 9 0.06
114 18 0.11
ACGTcount: A:0.44, C:0.14, G:0.20, T:0.22
Consensus pattern (110 bp):
ATAGTAAATCAGCGAACTGTTAGAAAACTGAAGGTCGCGATAGAAAATCAACAACTGTAAAAATG
AAAGTCGCGATAGTAAATCAACGAATTGCAAAAATGAAAGTCACG
Found at i:32614197 original size:75 final size:73
Alignment explanation
Indices: 32613807--32614229 Score: 246
Period size: 75 Copynumber: 5.7 Consensus size: 73
32613797 TCACAACAGT
* * * * * **
32613807 AAATTAGCGAACTTTAAAAATGGCAATTGCAATAGTAAATCAATGAACTGTTAGAAAA-CTGAAG
1 AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATC-GAAG
* *
32613871 GTCGCGATAGT
65 GTCTC-AT-GA
* * ** * * * * * *
32613882 AAATCAGC-AGACCGTAAAAATGACAGCCGCGATTGTAAATCAACGAATTG-TA-AAAAT-GAAA
1 AAATTAACGA-ACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATCGAAG
* *
32613943 GTCACGATAGT
65 GTCTC-AT-GA
* * * * * *
32613954 AAATTAGCGAACTATAAAAATGACAATCGCAATAGGAAATCAACTAACTGTTAGAAAATCAAAGG
1 AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATCGAAGG
* *
32614019 TCGCGATAGT
66 TCTC-AT-GA
* * * ** *
32614029 AAATCAACGGATTGCAAAAATGACAGTCGCGATAGTAAATCAGCGAACTGTTAGAAAA-CTGAAG
1 AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATC-GAAG
* *
32614093 GTCGTGATAA
65 GTC-TCATGA
* * * * *
32614103 AATATTAACGAATTGTAAAAATGATAGTCGCGATAATAAATCAGCGAACTGTTAGAAAATCGAAG
1 AA-ATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATCGAAG
32614168 GTCATCATCGA
65 GTC-TCAT-GA
* * * * * * *
32614179 AAATTAGCGGACTATAAAAATAATAGTTGCAATATTAAATCAGCAAACTGT
1 AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGT
32614230 AAAATTGACA
Statistics
Matches: 278, Mismatches: 59, Indels: 22
0.77 0.16 0.06
Matches are distributed among these distances:
72 51 0.18
73 7 0.03
74 11 0.04
75 205 0.74
76 4 0.01
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (73 bp):
AAATTAACGAACTATAAAAATGACAGTCGCAATAGTAAATCAGCGAACTGTTAGAAAATCGAAGG
TCTCATGA
Found at i:32614198 original size:150 final size:148
Alignment explanation
Indices: 32613709--32614262 Score: 433
Period size: 147 Copynumber: 3.8 Consensus size: 148
32613699 GGTATAAAAT
* * * * * ** * *
32613709 TGTTAGAAAACCAAAGGTCGCGATGGTAAATCAGCAGACCGTAAAAATAACAGTCGTGATAGTAA
1 TGTTAGAAAATCAAAGGTCGCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTAA
* * * * * * * *
32613774 ATCAGCGAATTG-T-AAAATGAAAGTCACAACAGTAAATTAGCGAACTTTAAAAATGGCAATTGC
66 ATCAGCGAACTGTTAAAAATGAAAGTCACGATAGAAAATTAACGAACTATAAAAATGACAATCGC
*
32613837 AAT-AGTAAATCAATGAAC
131 AATAAG-AAATCAACGAAC
* * * * ** * *
32613855 TGTTAGAAAA-CTGAAGGTCGCGATAGTAAATCAGCAGACCGTAAAAATGACAGCCGCGATTGTA
1 TGTTAGAAAATC-AAAGGTCGCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTA
* * * *
32613919 AATCAACGAATTG-TAAAAATGAAAGTCACGATAGTAAATTAGCGAACTATAAAAATGACAATCG
65 AATCAGCGAACTGTTAAAAATGAAAGTCACGATAGAAAATTAACGAACTATAAAAATGACAATCG
* *
32613983 CAATAGGAAATCAACTAAC
130 CAATAAGAAATCAACGAAC
* * **
32614002 TGTTAGAAAATCAAAGGTCGCGATAGTAAATCAACGGATTGCAAAAATGACAGTCGCGATAGTAA
1 TGTTAGAAAATCAAAGGTCGCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTAA
* ** * * * *
32614067 ATCAGCGAACTGTTAGAAAACTGAAGGTCGTGATA-AAATATTAACGAATTGTAAAAATGATAGT
66 ATCAGCGAACTGTTA-AAAA-TGAAAGTCACGATAGAAA-ATTAACGAACTATAAAAATGACAAT
* * *
32614131 CGCGATAATAAATCAGCGAAC
128 CGCAATAAGAAATCAACGAAC
* * * * * * * * * *
32614152 TGTTAGAAAATCGAAGGTCATC-ATCGAAAATTAGCGGACTATAAAAATAATAGTTGCAATATTA
1 TGTTAGAAAATCAAAGGTC-GCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTA
* * * * *
32614216 AATCAGCAAACTG-TAAAATTGACAGTCGCAATA-ATAAATTAACGAAC
65 AATCAGCGAACTGTTAAAAATGAAAGTCACGATAGA-AAATTAACGAAC
32614263 GATTAGAAAA
Statistics
Matches: 338, Mismatches: 60, Indels: 19
0.81 0.14 0.05
Matches are distributed among these distances:
145 1 0.00
146 69 0.20
147 143 0.42
148 9 0.03
149 8 0.02
150 107 0.32
151 1 0.00
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.22
Consensus pattern (148 bp):
TGTTAGAAAATCAAAGGTCGCGATAGAAAATCAACGGACTATAAAAATGACAGTCGCGATAGTAA
ATCAGCGAACTGTTAAAAATGAAAGTCACGATAGAAAATTAACGAACTATAAAAATGACAATCGC
AATAAGAAATCAACGAAC
Found at i:32614334 original size:36 final size:35
Alignment explanation
Indices: 32614294--32614486 Score: 120
Period size: 36 Copynumber: 5.2 Consensus size: 35
32614284 GTGGCGATAA
32614294 TAAATCAACGAACCATAAAAATGACAGTCGCAATAG
1 TAAATCAAC-AACCATAAAAATGACAGTCGCAATAG
* * *
32614330 TAAATCAACGAACTGTTAGAAAAATGA-AGGTCGCGATAG
1 TAAATCAAC-AAC---CATAAAAATGACA-GTCGCAATAG
* * * **
32614369 TAAATTAGCAGACCGTAAAAATGACAGTCATAATAG
1 TAAATCAACA-ACCATAAAAATGACAGTCGCAATAG
* ** * *
32614405 TAAATTAACAAACTGTTAGAAAACTGA-AGGTCGCGATAC
1 TAAATCAAC-AAC-CATA-AAAA-TGACA-GTCGCAATAG
* *
32614444 TAAATCAGCAGACCATAAAAATGACAATCGCAATAG
1 TAAATCAACA-ACCATAAAAATGACAGTCGCAATAG
32614480 TAAATCA
1 TAAATCA
32614487 GCAAACTGTT
Statistics
Matches: 119, Mismatches: 25, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
36 55 0.46
37 9 0.08
38 10 0.08
39 45 0.38
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (35 bp):
TAAATCAACAACCATAAAAATGACAGTCGCAATAG
Found at i:32614479 original size:150 final size:153
Alignment explanation
Indices: 32614214--32614502 Score: 381
Period size: 150 Copynumber: 1.9 Consensus size: 153
32614204 GTTGCAATAT
* * * *
32614214 TAAATCAGCAAACTGTAAAATTGACAGTCGCAATAATAAATTAACGAACGATTAGAAAATCGAAT
1 TAAATCAGCAAACCGTAAAAATGACAGTCACAATAATAAATTAACAAACGATTAGAAAATC--AT
* * *
32614279 GTAAGGTGGCGATAATAAATCAACGAACCATAAAAATGACAGTCGCAATAGTAAATCAACGAACT
64 GTAAGGTCGCGATAATAAATCAACGAACCATAAAAATGACAATCGCAATAGTAAATCAACAAACT
32614344 GTTAGAAAAATGAAGGTCGCGATAG
129 GTTAGAAAAATGAAGGTCGCGATAG
* * * *
32614369 TAAATTAGCAGACCGTAAAAATGACAGTCATAATAGTAAATTAACAAACTG-TTAGAAAA-C-TG
1 TAAATCAGCAAACCGTAAAAATGACAGTCACAATAATAAATTAACAAAC-GATTAGAAAATCATG
* * *
32614431 -AAGGTCGCGATACTAAATCAGC-AGACCATAAAAATGACAATCGCAATAGTAAATCAGCAAACT
65 TAAGGTCGCGATAATAAATCAACGA-ACCATAAAAATGACAATCGCAATAGTAAATCAACAAACT
32614494 GTTAGAAAA
129 GTTAGAAAA
32614503 CCGAAGGTAA
Statistics
Matches: 118, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
149 1 0.01
150 64 0.54
151 2 0.02
154 1 0.01
155 49 0.42
156 1 0.01
ACGTcount: A:0.47, C:0.15, G:0.17, T:0.21
Consensus pattern (153 bp):
TAAATCAGCAAACCGTAAAAATGACAGTCACAATAATAAATTAACAAACGATTAGAAAATCATGT
AAGGTCGCGATAATAAATCAACGAACCATAAAAATGACAATCGCAATAGTAAATCAACAAACTGT
TAGAAAAATGAAGGTCGCGATAG
Found at i:32614503 original size:75 final size:75
Alignment explanation
Indices: 32614214--32614510 Score: 328
Period size: 75 Copynumber: 3.9 Consensus size: 75
32614204 GTTGCAATAT
* ** * * * *
32614214 TAAATCAGCAAACTGTAAAATTGACAGTCGCAATAATAAATTAACGAAC-GATTAGAAAATCGAA
1 TAAATCAGCAGACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTG-TTAGAAAA-C---
*
32614278 TGTAAGGTGGCGATAA
61 TG-AAGGTCGCGATAA
* * *
32614294 TAAATCAAC-GAACCATAAAAATGACAGTCGCAATAGTAAATCAACGAACTGTTAGAAAAATGAA
1 TAAATCAGCAG-ACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTGTTAGAAAACTGAA
*
32614358 GGTCGCGATAG
65 GGTCGCGATAA
* * ** *
32614369 TAAATTAGCAGACCGTAAAAATGACAGTCATAATAGTAAATTAACAAACTGTTAGAAAACTGAAG
1 TAAATCAGCAGACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTGTTAGAAAACTGAAG
*
32614434 GTCGCGATAC
66 GTCGCGATAA
* * *
32614444 TAAATCAGCAGACCATAAAAATGACAATCGCAATAGTAAATCAGCAAACTGTTAGAAAACCGAAG
1 TAAATCAGCAGACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTGTTAGAAAACTGAAG
32614509 GT
66 GT
32614511 AATGTCGCTG
Statistics
Matches: 187, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
75 134 0.72
76 3 0.02
80 49 0.26
81 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.21
Consensus pattern (75 bp):
TAAATCAGCAGACCATAAAAATGACAGTCGCAATAGTAAATCAACAAACTGTTAGAAAACTGAAG
GTCGCGATAA
Found at i:32615359 original size:25 final size:26
Alignment explanation
Indices: 32615305--32615359 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
32615295 AAATATTAAA
*
32615305 ATTAATTTAATATTAAGAGAATCACT
1 ATTAATTTAATATTAAGAAAATCACT
*
32615331 -TTAATATTAA-ATTAATAAAAT-ACT
1 ATTAAT-TTAATATTAAGAAAATCACT
32615355 ATTAA
1 ATTAA
32615360 GATAAGTATT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
24 3 0.12
25 18 0.72
26 4 0.16
ACGTcount: A:0.51, C:0.05, G:0.04, T:0.40
Consensus pattern (26 bp):
ATTAATTTAATATTAAGAAAATCACT
Found at i:32615382 original size:68 final size:71
Alignment explanation
Indices: 32615252--32615388 Score: 199
Period size: 68 Copynumber: 2.0 Consensus size: 71
32615242 AATTAAACTT
* * *
32615252 AATCATTTTAATATTAAATTAATAGAATATTTATTTACAAGATAAATATTAAAATTAATTTAATA
1 AATCACTTTAATATTAAATTAATAAAATATCTATTTA-AAGATAAATATTAAAATTAATTTAATA
32615317 TTAAGAG
65 TTAAGAG
* *
32615324 AATCACTTTAATATTAAATTAATAAAATA-CTA-TT-AAGATAAGTATTAAATTTAATTTAATAT
1 AATCACTTTAATATTAAATTAATAAAATATCTATTTAAAGATAAATATTAAAATTAATTTAATAT
32615386 TAA
66 TAA
32615389 ATCTATTAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
68 29 0.48
70 2 0.03
71 2 0.03
72 27 0.45
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (71 bp):
AATCACTTTAATATTAAATTAATAAAATATCTATTTAAAGATAAATATTAAAATTAATTTAATAT
TAAGAG
Found at i:32615404 original size:68 final size:71
Alignment explanation
Indices: 32615260--32615407 Score: 160
Period size: 68 Copynumber: 2.1 Consensus size: 71
32615250 TTAATCATTT
* * *
32615260 TAATATTAAATTAATAGAATATTTATTTACAAGATAAATATTAAAATTAATTTAATATTAAGAGA
1 TAATATTAAATTAATAAAATATCTATTTA-AAGATAAATATTAAAATTAATTTAATATTAAGACA
***
32615325 ATCACTT
65 ATCAAAA
* * *
32615332 TAATATTAAATTAATAAAATA-CTA-TT-AAGATAAGTATTAAATTTAATTTAATATTAA-ATCT
1 TAATATTAAATTAATAAAATATCTATTTAAAGATAAATATTAAAATTAATTTAATATTAAGA-CA
*
32615393 ATTAAAA
65 ATCAAAA
32615400 TAATATTA
1 TAATATTA
32615408 TTTTTGGCAG
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
67 1 0.02
68 40 0.62
70 2 0.03
71 2 0.03
72 20 0.31
ACGTcount: A:0.51, C:0.03, G:0.04, T:0.41
Consensus pattern (71 bp):
TAATATTAAATTAATAAAATATCTATTTAAAGATAAATATTAAAATTAATTTAATATTAAGACAA
TCAAAA
Found at i:32619457 original size:14 final size:14
Alignment explanation
Indices: 32619438--32619468 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
32619428 ACAGAAACTC
32619438 AATTATAACCGTTT
1 AATTATAACCGTTT
32619452 AATTATAACCGTTT
1 AATTATAACCGTTT
32619466 AAT
1 AAT
32619469 CATTAAGCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.13, G:0.06, T:0.42
Consensus pattern (14 bp):
AATTATAACCGTTT
Found at i:32622708 original size:102 final size:102
Alignment explanation
Indices: 32622532--32622736 Score: 322
Period size: 102 Copynumber: 2.0 Consensus size: 102
32622522 GTCTCTTTAT
* *
32622532 TTTTCTTGAAAATGTCCTTTTTTCGACATTCCACCCAAATCCAAGTAACATAAATGCCAACGATC
1 TTTTCTTGAAAATATCCTTTTTTCGACATTCCACCCAAATCCAAGTAACAAAAATGCCAACGATC
* *
32622597 AGAGCACTTTTGGCCATCAAATTGAGCAATAACAGCA
66 AGAGAACTTTTGGCCATCAAATTAAGCAATAACAGCA
* *
32622634 TTTTCTTGAAAATATCCTCTTTTT-GGCATTCCACCCAAATCCAAGTAACAAAAATGCCAAGGAT
1 TTTTCTTGAAAATATCCT-TTTTTCGACATTCCACCCAAATCCAAGTAACAAAAATGCCAACGAT
* *
32622698 CAGATAACTTTTGGCCCTCAAATTAAGCAATAACAGCA
65 CAGAGAACTTTTGGCCATCAAATTAAGCAATAACAGCA
32622736 T
1 T
32622737 CAAGTAACCA
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
102 89 0.95
103 5 0.05
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.29
Consensus pattern (102 bp):
TTTTCTTGAAAATATCCTTTTTTCGACATTCCACCCAAATCCAAGTAACAAAAATGCCAACGATC
AGAGAACTTTTGGCCATCAAATTAAGCAATAACAGCA
Found at i:32625711 original size:27 final size:27
Alignment explanation
Indices: 32625680--32625846 Score: 198
Period size: 27 Copynumber: 6.1 Consensus size: 27
32625670 AGCATGGCTG
* *
32625680 CCAGATACAGATAATGTGACAGAGTCA
1 CCAGATACAGATAATGTGGCAGAGCCA
*
32625707 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
32625735 CCAGA-ACAGATATATGTGGCAAAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
32625762 CCAGAT-CAGATAATCGTGGCATAGCCA
1 CCAGATACAGATAAT-GTGGCAGAGCCA
*
32625789 CCA-AAACAGATATATGTGGCAGAGCCA
1 CCAGATACAGATA-ATGTGGCAGAGCCA
*
32625816 CCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGATACAGATAA-TGTGGCAGAGCCA
32625843 CCAG
1 CCAG
32625847 GACGCTTCCT
Statistics
Matches: 122, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
26 4 0.03
27 99 0.81
28 19 0.16
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGATACAGATAATGTGGCAGAGCCA
Found at i:32625776 original size:54 final size:54
Alignment explanation
Indices: 32625680--32625846 Score: 246
Period size: 54 Copynumber: 3.1 Consensus size: 54
32625670 AGCATGGCTG
* * * *
32625680 CCAGATACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATCGTGGCATAGCCA
*
32625735 CCAGAACAGATATATGTGGCAAAGCCACCAGATCAGATAATCGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
* *
32625789 CCAAAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
32625843 CCAG
1 CCAG
32625847 GACGCTTCCT
Statistics
Matches: 102, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
54 80 0.78
55 22 0.22
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATCGTGGCATAGCCA
Found at i:32627451 original size:26 final size:26
Alignment explanation
Indices: 32627422--32627529 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
32627412 TAAAATGCTC
*
32627422 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
32627448 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
32627474 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
32627500 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
32627526 ATCA
1 ATCA
32627530 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:32627868 original size:16 final size:17
Alignment explanation
Indices: 32627839--32627887 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
32627829 TGTATTTAAA
* *
32627839 TTAAAAATATATAAATT
1 TTAAAAATAAATAAAAT
32627856 TTAAAAA-AAATAAAAT
1 TTAAAAATAAATAAAAT
* *
32627872 TTATAAATTAATAAAA
1 TTAAAAATAAATAAAA
32627888 AGTATAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 13 0.48
17 14 0.52
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
TTAAAAATAAATAAAAT
Found at i:32628462 original size:27 final size:27
Alignment explanation
Indices: 32628412--32628490 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
32628402 GGCCTTACAT
*
32628412 ATTTTTATAA-GTTTATAAATATT-TAG
1 ATTTTTATAATTTTTATAAAT-TTATAG
*
32628438 TTATTTTATATATTTTTATAAATTTATAG
1 AT-TTTTATA-ATTTTTATAAATTTATAG
*
32628467 ATTTTTATAATTTTTGTAAATTTA
1 ATTTTTATAATTTTTATAAATTTA
32628491 CATATTATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
26 1 0.02
27 21 0.47
28 10 0.22
29 13 0.29
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (27 bp):
ATTTTTATAATTTTTATAAATTTATAG
Found at i:32628465 original size:18 final size:18
Alignment explanation
Indices: 32628410--32628476 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
32628400 AAGGCCTTAC
*
32628410 ATATTTTTATAAGTTTAT
1 ATATTTTTATAAATTTAT
* * * *
32628428 AAATATTTAGTTATTTTAT
1 ATATTTTTA-TAAATTTAT
32628447 ATATTTTTATAAATTTAT
1 ATATTTTTATAAATTTAT
*
32628465 AGATTTTTATAA
1 ATATTTTTATAA
32628477 TTTTTGTAAA
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 25 0.64
19 14 0.36
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.58
Consensus pattern (18 bp):
ATATTTTTATAAATTTAT
Found at i:32640735 original size:18 final size:18
Alignment explanation
Indices: 32640712--32640749 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
32640702 AATATATATT
32640712 AACCCAAGTACCCAACCC
1 AACCCAAGTACCCAACCC
*
32640730 AACCCAATTACCCAACCC
1 AACCCAAGTACCCAACCC
32640748 AA
1 AA
32640750 TCATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.42, C:0.47, G:0.03, T:0.08
Consensus pattern (18 bp):
AACCCAAGTACCCAACCC
Found at i:32640742 original size:13 final size:13
Alignment explanation
Indices: 32640726--32640750 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
32640716 CAAGTACCCA
32640726 ACCCAACCCAATT
1 ACCCAACCCAATT
32640739 ACCCAACCCAAT
1 ACCCAACCCAAT
32640751 CATAAAAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.12
Consensus pattern (13 bp):
ACCCAACCCAATT
Found at i:32640788 original size:5 final size:6
Alignment explanation
Indices: 32640775--32640809 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
32640765 ATAATTTAAT
32640775 AAATAA AAATAA AAATATA AAACTAA AAATAA AAA
1 AAATAA AAATAA AAATA-A AAA-TAA AAATAA AAA
32640810 ATATAATTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 17 0.63
7 8 0.30
8 2 0.07
ACGTcount: A:0.80, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AAATAA
Found at i:32640796 original size:14 final size:14
Alignment explanation
Indices: 32640777--32640812 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
32640767 AATTTAATAA
32640777 ATAAAAATAAAAAT
1 ATAAAAATAAAAAT
*
32640791 ATAAAACTAAAAAT
1 ATAAAAATAAAAAT
32640805 A-AAAAATA
1 ATAAAAATA
32640813 TAATTTTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (14 bp):
ATAAAAATAAAAAT
Found at i:32640910 original size:9 final size:9
Alignment explanation
Indices: 32640827--32640911 Score: 91
Period size: 9 Copynumber: 9.4 Consensus size: 9
32640817 TTTATACAAA
*
32640827 TAATTCGAT
1 TAATTCGGT
32640836 TAATTCGGT
1 TAATTCGGT
32640845 TAATTCGGT
1 TAATTCGGT
* *
32640854 TAATTTGGG
1 TAATTCGGT
*
32640863 TAATTCGGG
1 TAATTCGGT
32640872 TAATTCGAG-
1 TAATTCG-GT
*
32640881 TAATTCAGT
1 TAATTCGGT
*
32640890 TAATTCGAT
1 TAATTCGGT
*
32640899 TAATTCAGT
1 TAATTCGGT
32640908 TAAT
1 TAAT
32640912 ATTATACTTA
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
8 1 0.02
9 63 0.97
10 1 0.02
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.42
Consensus pattern (9 bp):
TAATTCGGT
Found at i:32645201 original size:20 final size:20
Alignment explanation
Indices: 32645176--32645215 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32645166 AATTTCAAAA
32645176 TTATAAAAT-TTTAGAATTTT
1 TTAT-AAATGTTTAGAATTTT
*
32645196 TTATAAATGTTTTGAATTTT
1 TTATAAATGTTTAGAATTTT
32645216 AAAATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.57
Consensus pattern (20 bp):
TTATAAATGTTTAGAATTTT
Found at i:32645213 original size:28 final size:27
Alignment explanation
Indices: 32645182--32645238 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 27
32645172 AAAATTATAA
* *
32645182 AATTTTAGAATTT-TTTATAAATGTTTTG
1 AATTTTAAAATTTATTT-TAAA-ATTTTG
32645210 AATTTTAAAATTTATTTTAAAATTTTG
1 AATTTTAAAATTTATTTTAAAATTTTG
32645237 AA
1 AA
32645239 AATTATTTTG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
27 7 0.27
28 16 0.62
29 3 0.12
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (27 bp):
AATTTTAAAATTTATTTTAAAATTTTG
Found at i:32645233 original size:20 final size:20
Alignment explanation
Indices: 32645210--32645247 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32645200 AAATGTTTTG
32645210 AATTTT-AAAATTTATTTTAA
1 AATTTTGAAAA-TTATTTTAA
32645230 AATTTTGAAAATTATTTT
1 AATTTTGAAAATTATTTT
32645248 GTACTTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
AATTTTGAAAATTATTTTAA
Found at i:32652752 original size:35 final size:35
Alignment explanation
Indices: 32652686--32652952 Score: 327
Period size: 35 Copynumber: 7.6 Consensus size: 35
32652676 TCCTCATTGA
* * * *
32652686 AATACTATACCTACATTTCACAACTCGGTATGGAA
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* ** *
32652721 AATGCCATACCTACGTTTCTTAACTTAGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* *
32652756 AATACCATACCTACATTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * *
32652791 TATTCCATACCTACGTTTCACAACTCGGTATGGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * *
32652826 GATACCATACCTACGTTTCACAACTCGGTATAGAT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * *
32652861 GATACCATACCTACATTTCACAACTCAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
* * * *
32652896 AATATCATACCTATGTTTCACAACTTAGTATGGTT
1 AATACCATACCTACGTTTCACAACTCAGTATGGAT
32652931 AATACCATACCTACGTTTCACA
1 AATACCATACCTACGTTTCACA
32652953 TTTTGCCATG
Statistics
Matches: 199, Mismatches: 33, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
35 199 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.33
Consensus pattern (35 bp):
AATACCATACCTACGTTTCACAACTCAGTATGGAT
Found at i:32652874 original size:105 final size:105
Alignment explanation
Indices: 32652692--32652952 Score: 371
Period size: 105 Copynumber: 2.5 Consensus size: 105
32652682 TTGAAATACT
* * * ** * *
32652692 ATACCTACATTTCACAACTCGGTATGGAAAATGCCATACCTACGTTTCTTAACTTAGTATGGATA
1 ATACCTACGTTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCAGTATAGATA
*
32652757 ATACCATACCTACATTTCACAACTCAGTATGGTTTAT-TCC
66 ATACCATACCTACATTTCACAACTCAGTATGGTTAATAT-C
* * *
32652797 ATACCTACGTTTCACAACTCGGTATGGATGATACCATACCTACGTTTCACAACTCGGTATAGATG
1 ATACCTACGTTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCAGTATAGATA
32652862 ATACCATACCTACATTTCACAACTCAGTATGGTTAATATC
66 ATACCATACCTACATTTCACAACTCAGTATGGTTAATATC
* ** *
32652902 ATACCTATGTTTCACAACTTAGTATGGTTAATACCATACCTACGTTTCACA
1 ATACCTACGTTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACA
32652953 TTTTGCCATG
Statistics
Matches: 139, Mismatches: 16, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
105 138 0.99
106 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (105 bp):
ATACCTACGTTTCACAACTCGGTATGGATAATACCATACCTACGTTTCACAACTCAGTATAGATA
ATACCATACCTACATTTCACAACTCAGTATGGTTAATATC
Found at i:32657615 original size:40 final size:39
Alignment explanation
Indices: 32657515--32657620 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 39
32657505 GAAATCCTTG
* *
32657515 TTATAATTATTGTAATTGTAA-TTTATGATCGAATATTA
1 TTATAATTATTGTAATTGTAATTTTATGATCAAACATTA
* *
32657553 TTATAATTATTGTAACTGTAATTTTGTCGATCAAACATTA
1 TTATAATTATTGTAATTGTAATTTTAT-GATCAAACATTA
*
32657593 TTATAATTA-TGTTAATTATAATTATTAT
1 TTATAATTATTG-TAATTGTAATT-TTAT
32657621 ATTTGGTTAA
Statistics
Matches: 57, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
38 20 0.35
39 6 0.11
40 28 0.49
41 3 0.05
ACGTcount: A:0.37, C:0.05, G:0.08, T:0.50
Consensus pattern (39 bp):
TTATAATTATTGTAATTGTAATTTTATGATCAAACATTA
Found at i:32659398 original size:48 final size:48
Alignment explanation
Indices: 32659327--32659423 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 48
32659317 TATAAAATGT
*
32659327 AACGGCCCGAAAGTCAATGGTGTTGAAAAGTGTGATTTCAGGACCCCG
1 AACGGCCCGAAAGTCAATGGTGTTGAAAAGTGTGATTCCAGGACCCCG
32659375 AACGGCCCGAAAGTCAATGGTGTTGAAAAGTGTGATTCCAGGACCCCG
1 AACGGCCCGAAAGTCAATGGTGTTGAAAAGTGTGATTCCAGGACCCCG
32659423 A
1 A
32659424 TTCCTTATAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.30, C:0.22, G:0.29, T:0.20
Consensus pattern (48 bp):
AACGGCCCGAAAGTCAATGGTGTTGAAAAGTGTGATTCCAGGACCCCG
Found at i:32660920 original size:18 final size:18
Alignment explanation
Indices: 32660897--32660955 Score: 61
Period size: 16 Copynumber: 3.4 Consensus size: 18
32660887 AGTTAATGAC
32660897 TTGAAATGGCAAATGATA
1 TTGAAATGGCAAATGATA
* *
32660915 TTGAAAT--AAAATGCTA
1 TTGAAATGGCAAATGATA
* *
32660931 TTGAAATAGCAAATGTTA
1 TTGAAATGGCAAATGATA
32660949 -TGAAATG
1 TTGAAATG
32660956 AAATGAAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
16 14 0.41
17 6 0.18
18 14 0.41
ACGTcount: A:0.46, C:0.05, G:0.19, T:0.31
Consensus pattern (18 bp):
TTGAAATGGCAAATGATA
Found at i:32660932 original size:16 final size:16
Alignment explanation
Indices: 32660907--32660961 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
32660897 TTGAAATGGC
32660907 AAATGATATTGAAATA
1 AAATGATATTGAAATA
*
32660923 AAATGCTATTGAAATA
1 AAATGATATTGAAATA
* *
32660939 GCAAATGTTA-TGAAATG
1 --AAATGATATTGAAATA
32660956 AAATGA
1 AAATGA
32660962 AATTTAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
15 5 0.15
16 15 0.45
17 6 0.18
18 7 0.21
ACGTcount: A:0.51, C:0.04, G:0.16, T:0.29
Consensus pattern (16 bp):
AAATGATATTGAAATA
Found at i:32660935 original size:34 final size:33
Alignment explanation
Indices: 32660897--32660960 Score: 92
Period size: 34 Copynumber: 1.9 Consensus size: 33
32660887 AGTTAATGAC
*
32660897 TTGAAATGGCAAATGATATTGAAATAAAATGCTA
1 TTGAAATAGCAAATGATA-TGAAATAAAATGCTA
* *
32660931 TTGAAATAGCAAATGTTATGAAATGAAATG
1 TTGAAATAGCAAATGATATGAAATAAAATG
32660961 AAATTTAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
33 11 0.41
34 16 0.59
ACGTcount: A:0.47, C:0.05, G:0.19, T:0.30
Consensus pattern (33 bp):
TTGAAATAGCAAATGATATGAAATAAAATGCTA
Found at i:32661543 original size:23 final size:22
Alignment explanation
Indices: 32661517--32661560 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32661507 AATTAGTTAT
32661517 ATGTTAGGCATTAT-GTTTGATGG
1 ATGTTAGG-ATT-TGGTTTGATGG
*
32661540 ATGTTTGGATTTGGTTTGATG
1 ATGTTAGGATTTGGTTTGATG
32661561 CATAATATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 1 0.05
22 11 0.58
23 7 0.37
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (22 bp):
ATGTTAGGATTTGGTTTGATGG
Found at i:32661872 original size:33 final size:33
Alignment explanation
Indices: 32661830--32661893 Score: 119
Period size: 33 Copynumber: 1.9 Consensus size: 33
32661820 AATAGGTTGA
32661830 AATGTAGTCTAAATGGAAACTTGGGACTTAAGC
1 AATGTAGTCTAAATGGAAACTTGGGACTTAAGC
*
32661863 AATGTAGTCTAAATGGAAGCTTGGGACTTAA
1 AATGTAGTCTAAATGGAAACTTGGGACTTAA
32661894 TCATTCCATG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (33 bp):
AATGTAGTCTAAATGGAAACTTGGGACTTAAGC
Found at i:32662547 original size:20 final size:19
Alignment explanation
Indices: 32662522--32662566 Score: 72
Period size: 19 Copynumber: 2.3 Consensus size: 19
32662512 AGGGGTGTGC
32662522 AAAATTCGGGTAAAACCGAA
1 AAAATTC-GGTAAAACCGAA
*
32662542 AAAATTCGGTTAAACCGAA
1 AAAATTCGGTAAAACCGAA
32662561 AAAATT
1 AAAATT
32662567 AATAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.51, C:0.13, G:0.16, T:0.20
Consensus pattern (19 bp):
AAAATTCGGTAAAACCGAA
Found at i:32665232 original size:28 final size:28
Alignment explanation
Indices: 32665192--32665248 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
32665182 TTGAACGTGT
*
32665192 TAGGGGGGCTGTTAGATATGTGAGACAA
1 TAGGGGGGCTGTTAGATATGCGAGACAA
32665220 TAGGGGGGCTGTTAGATATGCGAGACAA
1 TAGGGGGGCTGTTAGATATGCGAGACAA
32665248 T
1 T
32665249 CTCTAGCTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.28, C:0.09, G:0.39, T:0.25
Consensus pattern (28 bp):
TAGGGGGGCTGTTAGATATGCGAGACAA
Found at i:32666703 original size:37 final size:37
Alignment explanation
Indices: 32666662--32666798 Score: 184
Period size: 37 Copynumber: 3.9 Consensus size: 37
32666652 TAATTTCAAG
32666662 ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
1 ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
*
32666699 ACTTATGTAATATTTTT-A--A--T--T-ATTCATAG
1 ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
32666728 ACTTATGTAATATTTTTAATTATGTAGTGATTCA-AA
1 ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
*
32666764 GACTTATGTAATGTTTTTAATTATGTAGTGATTCA
1 -ACTTATGTAATATTTTTAATTATGTAGTGATTCA
32666799 ATTCGGTTAA
Statistics
Matches: 88, Mismatches: 3, Indels: 18
0.81 0.03 0.17
Matches are distributed among these distances:
29 24 0.27
30 2 0.02
32 2 0.02
34 2 0.02
36 3 0.03
37 55 0.62
ACGTcount: A:0.34, C:0.06, G:0.12, T:0.49
Consensus pattern (37 bp):
ACTTATGTAATATTTTTAATTATGTAGTGATTCATAA
Found at i:32666724 original size:29 final size:29
Alignment explanation
Indices: 32666691--32666750 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
32666681 TTATGTAGTG
32666691 ATTCATAAACTTATGTAATATTTTTAATT
1 ATTCATAAACTTATGTAATATTTTTAATT
*
32666720 ATTCATAGACTTATGTAATATTTTTAATT
1 ATTCATAAACTTATGTAATATTTTTAATT
32666749 AT
1 AT
32666751 GTAGTGATTC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.37, C:0.07, G:0.05, T:0.52
Consensus pattern (29 bp):
ATTCATAAACTTATGTAATATTTTTAATT
Found at i:32666739 original size:66 final size:65
Alignment explanation
Indices: 32666656--32666787 Score: 230
Period size: 66 Copynumber: 2.0 Consensus size: 65
32666646 ATGTGTTAAT
32666656 TTCAAGACTTATGTAATATTTTTAATTATGTAGTGATTCATAA-ACTTATGTAATATTTTTAATT
1 TTCAAGACTTATGTAATATTTTTAATTATGTAGTGATTCA-AAGACTTATGTAATATTTTTAATT
32666720 A
65 A
*
32666721 TTCATAGACTTATGTAATATTTTTAATTATGTAGTGATTCAAAGACTTATGTAATGTTTTTAATT
1 TTCA-AGACTTATGTAATATTTTTAATTATGTAGTGATTCAAAGACTTATGTAATATTTTTAATT
32666786 A
65 A
32666787 T
1 T
32666788 GTAGTGATTC
Statistics
Matches: 64, Mismatches: 1, Indels: 3
0.94 0.01 0.04
Matches are distributed among these distances:
65 6 0.09
66 58 0.91
ACGTcount: A:0.34, C:0.06, G:0.11, T:0.49
Consensus pattern (65 bp):
TTCAAGACTTATGTAATATTTTTAATTATGTAGTGATTCAAAGACTTATGTAATATTTTTAATTA
Found at i:32666812 original size:9 final size:9
Alignment explanation
Indices: 32666798--32666880 Score: 89
Period size: 9 Copynumber: 9.4 Consensus size: 9
32666788 GTAGTGATTC
32666798 AATTCGGTT
1 AATTCGGTT
*
32666807 AATTCGGGT
1 AATTCGGTT
*
32666816 AA-TCGATT
1 AATTCGGTT
* *
32666824 AATTTGGGT
1 AATTCGGTT
*
32666833 AA-TCAGTT
1 AATTCGGTT
*
32666841 AATTCGATT
1 AATTCGGTT
32666850 AATTCGGTT
1 AATTCGGTT
*
32666859 AATTCGTTT
1 AATTCGGTT
32666868 AATTCGGTT
1 AATTCGGTT
32666877 AATT
1 AATT
32666881 TTTAACCAAA
Statistics
Matches: 58, Mismatches: 14, Indels: 4
0.76 0.18 0.05
Matches are distributed among these distances:
8 11 0.19
9 47 0.81
ACGTcount: A:0.28, C:0.10, G:0.19, T:0.43
Consensus pattern (9 bp):
AATTCGGTT
Found at i:32666827 original size:17 final size:17
Alignment explanation
Indices: 32666804--32666846 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
32666794 ATTCAATTCG
32666804 GTTAATTCGGGTAATC-
1 GTTAATTCGGGTAATCA
*
32666820 GATTAATTTGGGTAATCA
1 G-TTAATTCGGGTAATCA
32666838 GTTAATTCG
1 GTTAATTCG
32666847 ATTAATTCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.28, C:0.09, G:0.23, T:0.40
Consensus pattern (17 bp):
GTTAATTCGGGTAATCA
Found at i:32666835 original size:26 final size:27
Alignment explanation
Indices: 32666793--32666880 Score: 81
Period size: 26 Copynumber: 3.3 Consensus size: 27
32666783 ATTATGTAGT
*
32666793 GATTCAATTCGGTTAATTCGGGTAA-TC
1 GATT-AATTCGGGTAATTCGGGTAATTC
* * *
32666820 GATTAATTTGGGTAA-TCAGTTAATTC
1 GATTAATTCGGGTAATTCGGGTAATTC
* **
32666846 GATTAATTCGGTTAATTCGTTTAATTC
1 GATTAATTCGGGTAATTCGGGTAATTC
*
32666873 GGTTAATT
1 GATTAATT
32666881 TTTAACCAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
25 6 0.12
26 24 0.48
27 20 0.40
ACGTcount: A:0.27, C:0.10, G:0.19, T:0.43
Consensus pattern (27 bp):
GATTAATTCGGGTAATTCGGGTAATTC
Found at i:32676265 original size:9 final size:9
Alignment explanation
Indices: 32676251--32676276 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
32676241 GGGGAGGCAA
32676251 GAAGAAAGG
1 GAAGAAAGG
32676260 GAAGAAAGG
1 GAAGAAAGG
32676269 GAAGAAAG
1 GAAGAAAG
32676277 TTAGTCCAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (9 bp):
GAAGAAAGG
Found at i:32677730 original size:15 final size:16
Alignment explanation
Indices: 32677704--32677736 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
32677694 AAATTCTTTG
*
32677704 TTTAATTTTTTTTGAA
1 TTTAATTTTTTTTAAA
32677720 TTTAA-TTTTTTTAAA
1 TTTAATTTTTTTTAAA
32677735 TT
1 TT
32677737 AGAAAAATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTAATTTTTTTTAAA
Found at i:32678192 original size:30 final size:30
Alignment explanation
Indices: 32678158--32678219 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
32678148 CTGAGACGTA
32678158 TACTTTTCATCTTCCATGCGGAGAGTGTAC
1 TACTTTTCATCTTCCATGCGGAGAGTGTAC
32678188 TACTTTTCATCTTCCATGCGGAGAGTGTAC
1 TACTTTTCATCTTCCATGCGGAGAGTGTAC
32678218 TA
1 TA
32678220 TCACTCTGGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.37
Consensus pattern (30 bp):
TACTTTTCATCTTCCATGCGGAGAGTGTAC
Found at i:32680175 original size:18 final size:18
Alignment explanation
Indices: 32680152--32680188 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
32680142 AAATGAATGA
*
32680152 ATTAGGAGCAAATTGAAT
1 ATTAGGACCAAATTGAAT
32680170 ATTAGGACCAAATTGAAT
1 ATTAGGACCAAATTGAAT
32680188 A
1 A
32680189 GGTGAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.46, C:0.08, G:0.19, T:0.27
Consensus pattern (18 bp):
ATTAGGACCAAATTGAAT
Found at i:32682125 original size:33 final size:32
Alignment explanation
Indices: 32682088--32682199 Score: 113
Period size: 33 Copynumber: 3.4 Consensus size: 32
32682078 ACCTAAAAGA
*
32682088 TACAACTGGAAAAGAAAATGTACACTGTGTGTG
1 TACAACTGGAAAAGGAAATGTACACT-TGTGTG
** *
32682121 TACAACTTAAAAAGGAAACGTACACTTTGTGTG
1 TACAACTGGAAAAGGAAATGTACAC-TTGTGTG
*
32682154 TAC-ACTTGAAAAGGAAATGTATGC-CTTGTGTG
1 TACAACTGGAAAAGGAAATGTA--CACTTGTGTG
32682186 TACAA-TGTGAAAAG
1 TACAACTG-GAAAAG
32682200 TGGTAGCTTC
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
32 27 0.40
33 38 0.57
34 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.27
Consensus pattern (32 bp):
TACAACTGGAAAAGGAAATGTACACTTGTGTG
Found at i:32682183 original size:32 final size:32
Alignment explanation
Indices: 32682096--32682199 Score: 102
Period size: 32 Copynumber: 3.2 Consensus size: 32
32682086 GATACAACTG
* *
32682096 GAAAAGAAAATGTACA-CTGTGTGTGTACAACTT
1 GAAAAGGAAACGTACACCT-TGTGTGTAC-ACTT
* *
32682129 AAAAAGGAAACGTACACTTTGTGTGTACACTT
1 GAAAAGGAAACGTACACCTTGTGTGTACACTT
* ** *
32682161 GAAAAGGAAATGTATGCCTTGTGTGTACAATGT
1 GAAAAGGAAACGTACACCTTGTGTGTACACT-T
32682194 GAAAAG
1 GAAAAG
32682200 TGGTAGCTTC
Statistics
Matches: 59, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
32 29 0.49
33 29 0.49
34 1 0.02
ACGTcount: A:0.38, C:0.12, G:0.23, T:0.27
Consensus pattern (32 bp):
GAAAAGGAAACGTACACCTTGTGTGTACACTT
Found at i:32682229 original size:31 final size:31
Alignment explanation
Indices: 32682192--32682334 Score: 173
Period size: 31 Copynumber: 4.5 Consensus size: 31
32682182 TGTGTACAAT
32682192 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
32682223 GTGAAAAGTAGTAGCTTCGGCTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
32682254 GTGAAAAGTGGTAGCTCCAGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
32682285 GTGAATAA-TGGTAGCTTCGACTACAAGTGA-CAA
1 GTGAA-AAGTGGTAGCTTCGGCTAC--CTGATC-A
*
32682318 GTGATAAGTGGTAGCTT
1 GTGAAAAGTGGTAGCTT
32682335 TAGCTACAAT
Statistics
Matches: 96, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
31 74 0.77
32 5 0.05
33 17 0.18
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:32682429 original size:27 final size:27
Alignment explanation
Indices: 32682398--32682462 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
32682388 TAGTTGAACT
*
32682398 ATGGCAAAGTGATAAAGTGTGCCAATC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
32682425 ATGGCAAAGTGATATAGTGTGCCAAAC
1 ATGGCAAAGTGATAAAGTGTGCCAAAC
*
32682452 ATAGCAAAGTG
1 ATGGCAAAGTG
32682463 TTCAGTGATC
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.38, C:0.14, G:0.26, T:0.22
Consensus pattern (27 bp):
ATGGCAAAGTGATAAAGTGTGCCAAAC
Found at i:32682555 original size:34 final size:34
Alignment explanation
Indices: 32682517--32682590 Score: 121
Period size: 34 Copynumber: 2.2 Consensus size: 34
32682507 CATGGCAAAG
*
32682517 TGTGAAACGTAGGTATGGTATTTCTATACTGAGC
1 TGTGAAACGTAGGTATGGTATTTCCATACTGAGC
* *
32682551 TGTGAAACGTAGGTATGGTGTTTCCATACTGAGT
1 TGTGAAACGTAGGTATGGTATTTCCATACTGAGC
32682585 TGTGAA
1 TGTGAA
32682591 TCGTGGCACT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (34 bp):
TGTGAAACGTAGGTATGGTATTTCCATACTGAGC
Found at i:32683159 original size:20 final size:20
Alignment explanation
Indices: 32683136--32683175 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
32683126 CAAGTGCTCA
32683136 AATGAAAATATACTTGTGAT
1 AATGAAAATATACTTGTGAT
32683156 AATGAAAATATACTTGTGAT
1 AATGAAAATATACTTGTGAT
32683176 CGTGAGAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (20 bp):
AATGAAAATATACTTGTGAT
Found at i:32687508 original size:50 final size:49
Alignment explanation
Indices: 32687433--32687606 Score: 260
Period size: 50 Copynumber: 3.5 Consensus size: 49
32687423 ACAATACGAC
* *
32687433 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTTAGGTCGCAT
* * * *
32687483 GTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTGAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT-GTTAGGTCGCAT
32687533 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TGTTAGGTCGCAT
32687582 GTGTAGTACTAAGTGCAGGCTACTA
1 GTGTAGTACTAAGTGCAGGCTACTA
32687607 TGCGTATCAA
Statistics
Matches: 112, Mismatches: 10, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
49 32 0.29
50 79 0.71
51 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (49 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATGTTAGGTCGCAT
Found at i:32687614 original size:99 final size:100
Alignment explanation
Indices: 32687433--32687615 Score: 314
Period size: 99 Copynumber: 1.8 Consensus size: 100
32687423 ACAATACGAC
*
32687433 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCATACTGTTAAGTCGCATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACTAAGTG
*
32687498 CAGGCTACTACGTGTATCAGATGGTGAGGTCACGT
66 CAGGCTACTACGCGTATCAGATGGTGAGGTCACGT
* *
32687533 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATTGTT-GGTCGCATGTGTAGTACTAAGTG
1 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACTAAGTG
*
32687597 CAGGCTACTATGCGTATCA
66 CAGGCTACTACGCGTATCA
32687616 AATAGCTTCG
Statistics
Matches: 78, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
99 39 0.50
100 39 0.50
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.30
Consensus pattern (100 bp):
GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACTGTTAAGTCGCATGTGTAGTACTAAGTG
CAGGCTACTACGCGTATCAGATGGTGAGGTCACGT
Found at i:32689759 original size:126 final size:126
Alignment explanation
Indices: 32689534--32689918 Score: 619
Period size: 126 Copynumber: 3.0 Consensus size: 126
32689524 TTATAGCCTC
*
32689534 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * *
32689599 ACAGTGTATCCTGGTTGAAGTGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
*
32689660 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCTAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* *
32689725 ATAGTGCATCTTGCTTGAAGCGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
32689786 ATTTTTCTACGAATTACTGTAGCAAAAGAGCATCCACGTGGGAGTTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * **
32689851 ACAGTGCATCCTGCTTGAAGCCTTTTCCGACACTATTT-TTCTAGAAACGTCTGGTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCGTTTTCAG-CACTATTTGTTC-AGAAACGTCTACTCAGAATT
32689913 ATTTTT
1 ATTTTT
32689919 GTAGAAACCC
Statistics
Matches: 240, Mismatches: 17, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
126 208 0.87
127 32 0.13
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCGTTTTCAGCACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:32690400 original size:15 final size:15
Alignment explanation
Indices: 32690380--32690433 Score: 60
Period size: 15 Copynumber: 3.8 Consensus size: 15
32690370 TCTAAAACCT
32690380 TAAAACCCTAAATCC
1 TAAAACCCTAAATCC
32690395 TAAAACCCTAAA-CC
1 TAAAACCCTAAATCC
* * *
32690409 T--TACCATAAATTC
1 TAAAACCCTAAATCC
32690422 TAAAACCCTAAA
1 TAAAACCCTAAA
32690434 CCCTTACAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
12 7 0.23
13 2 0.06
14 3 0.10
15 19 0.61
ACGTcount: A:0.48, C:0.30, G:0.00, T:0.22
Consensus pattern (15 bp):
TAAAACCCTAAATCC
Found at i:32690424 original size:27 final size:28
Alignment explanation
Indices: 32690388--32690440 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
32690378 CTTAAAACCC
32690388 TAAATCCTAAAACCCTAAA-CCTTACCA
1 TAAATCCTAAAACCCTAAACCCTTACCA
*
32690415 TAAATTCTAAAACCCTAAACCCTTAC
1 TAAATCCTAAAACCCTAAACCCTTAC
32690441 AAAACCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 18 0.75
28 6 0.25
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.25
Consensus pattern (28 bp):
TAAATCCTAAAACCCTAAACCCTTACCA
Found at i:32690471 original size:45 final size:42
Alignment explanation
Indices: 32690374--32690482 Score: 107
Period size: 45 Copynumber: 2.5 Consensus size: 42
32690364 TATTTTTCTA
*
32690374 AAACCTTAAAACCCTAAATCC-TAAAACCCTAAACCTTACCAT
1 AAACC-TAAAACCCTAAACCCTTAAAACCCTAAACCTTACCAT
* *
32690416 AAATTCTAAAACCCTAAACCCTTACAAAACCCT-AACCTTAACCTT
1 AAA-CCTAAAACCCTAAACCCTT--AAAACCCTAAACCTT-ACCAT
32690461 AAACCATAAAAACCCT-AACCCT
1 AAACC-T-AAAACCCTAAACCCT
32690483 AAATAAATTA
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
42 17 0.30
43 2 0.04
44 7 0.12
45 22 0.39
46 8 0.14
ACGTcount: A:0.45, C:0.34, G:0.00, T:0.21
Consensus pattern (42 bp):
AAACCTAAAACCCTAAACCCTTAAAACCCTAAACCTTACCAT
Found at i:32705252 original size:19 final size:19
Alignment explanation
Indices: 32705228--32705266 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
32705218 AAAAAACTTC
32705228 TTTTTGCAATAGTCCAAAA
1 TTTTTGCAATAGTCCAAAA
*
32705247 TTTTTGCAATAGTGCAAAA
1 TTTTTGCAATAGTCCAAAA
32705266 T
1 T
32705267 CACACCATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.38
Consensus pattern (19 bp):
TTTTTGCAATAGTCCAAAA
Found at i:32707190 original size:27 final size:27
Alignment explanation
Indices: 32707160--32707216 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
32707150 ACAAGGGCAT
* *
32707160 TTCCTTCATA-TTTTACCATGCATACCA
1 TTCCTTCAGAGTTTT-CCATGAATACCA
*
32707187 TTCCTTCAGAGTTTTTCATGAATACCA
1 TTCCTTCAGAGTTTTCCATGAATACCA
32707214 TTC
1 TTC
32707217 TTTTAGACTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.25, C:0.26, G:0.07, T:0.42
Consensus pattern (27 bp):
TTCCTTCAGAGTTTTCCATGAATACCA
Found at i:32707319 original size:27 final size:26
Alignment explanation
Indices: 32707285--32707374 Score: 101
Period size: 27 Copynumber: 3.3 Consensus size: 26
32707275 TTGTTTTTTT
32707285 GCCACAAAGGCTTTCACTTCATGGTTC
1 GCCACAAAGGCTTTC-CTTCATGGTTC
* * *
32707312 ACCACAAAGACTTTCTTTTCATGG-TC
1 GCCACAAAGGCTTTC-CTTCATGGTTC
*
32707338 TGCCACAAAGGCTTTCCTTTTATGGTTC
1 -GCCACAAAGGCTTTCC-TTCATGGTTC
32707366 GCCACAAAG
1 GCCACAAAG
32707375 ATTTTTTTTG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
26 2 0.04
27 48 0.92
28 2 0.04
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (26 bp):
GCCACAAAGGCTTTCCTTCATGGTTC
Found at i:32709670 original size:6 final size:6
Alignment explanation
Indices: 32709654--32709687 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
32709644 TAGGTTTCCA
* *
32709654 AAAATG GAAATG AAAATG AAAATG AAAACG AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
32709688 CTTGCAATCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.68, C:0.03, G:0.18, T:0.12
Consensus pattern (6 bp):
AAAATG
Found at i:32709860 original size:25 final size:24
Alignment explanation
Indices: 32709826--32709923 Score: 99
Period size: 25 Copynumber: 3.9 Consensus size: 24
32709816 ATGAATTTTC
*
32709826 TCAAAATTTTACTAGGGTAAAATAG
1 TCAAAATTTTA-TGGGGTAAAATAG
* *
32709851 TCAAAATTTTATCGGGTTAAAATCG
1 TCAAAATTTTAT-GGGGTAAAATAG
*
32709876 TCAAAATTTTATCGGGGTAAAACCA-
1 TCAAAATTTTAT-GGGGTAAAA-TAG
*
32709901 TCAAATTTTTACTGGGGTAAAAT
1 TCAAAATTTTA-TGGGGTAAAAT
32709924 TGGGGTGAGA
Statistics
Matches: 62, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
24 1 0.02
25 60 0.97
26 1 0.02
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (24 bp):
TCAAAATTTTATGGGGTAAAATAG
Found at i:32709922 original size:50 final size:50
Alignment explanation
Indices: 32709826--32709923 Score: 112
Period size: 50 Copynumber: 2.0 Consensus size: 50
32709816 ATGAATTTTC
* *
32709826 TCAAAATTTTACTAGGGTAAAATAGTCAAAATTTTATCGGGTTAAAATCG
1 TCAAAATTTTACTAGGGTAAAACAGTCAAAATTTTATCGGGGTAAAATCG
* *
32709876 TCAAAATTTTA-TCGGGGTAAAACCA-TCAAATTTTTA-CTGGGGTAAAAT
1 TCAAAATTTTACT-AGGGTAAAA-CAGTCAAAATTTTATC-GGGGTAAAAT
32709924 TGGGGTGAGA
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
49 2 0.05
50 38 0.93
51 1 0.02
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (50 bp):
TCAAAATTTTACTAGGGTAAAACAGTCAAAATTTTATCGGGGTAAAATCG
Found at i:32712974 original size:10 final size:10
Alignment explanation
Indices: 32712952--32712999 Score: 51
Period size: 10 Copynumber: 4.5 Consensus size: 10
32712942 ATATACTAAT
32712952 ATTAATACTTA
1 ATTAAT-CTTA
32712963 ATTAATCTTA
1 ATTAATCTTA
*
32712973 ATTAACCTTA
1 ATTAATCTTA
*
32712983 ATTTATTCTTTA
1 A-TTAATC-TTA
32712995 ATTAA
1 ATTAA
32713000 ACTATTTTTA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
10 14 0.45
11 13 0.42
12 4 0.13
ACGTcount: A:0.40, C:0.10, G:0.00, T:0.50
Consensus pattern (10 bp):
ATTAATCTTA
Found at i:32718810 original size:17 final size:17
Alignment explanation
Indices: 32718788--32718822 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
32718778 AATCTCAAGT
32718788 TGAAAATGTTTAAGTAA
1 TGAAAATGTTTAAGTAA
32718805 TGAAAATGTTTAAGTAA
1 TGAAAATGTTTAAGTAA
32718822 T
1 T
32718823 TTAAAAACCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (17 bp):
TGAAAATGTTTAAGTAA
Found at i:32723733 original size:30 final size:30
Alignment explanation
Indices: 32723699--32723771 Score: 119
Period size: 30 Copynumber: 2.4 Consensus size: 30
32723689 GCCTATACCG
*
32723699 GGTGATATGAACTTGAACCACCCATGTCCA
1 GGTGATATGAACTCGAACCACCCATGTCCA
*
32723729 GGTGATATGAACTCGAACCACCCATGTCCG
1 GGTGATATGAACTCGAACCACCCATGTCCA
*
32723759 GGTTATATGAACT
1 GGTGATATGAACT
32723772 GTTCTGGGAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (30 bp):
GGTGATATGAACTCGAACCACCCATGTCCA
Found at i:32733253 original size:17 final size:19
Alignment explanation
Indices: 32733225--32733260 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
32733215 TTCAATGTAC
32733225 TTTAATCTTTCTTT-TTTT
1 TTTAATCTTTCTTTGTTTT
32733243 TTTAA-CTTTCTTTGTTTT
1 TTTAATCTTTCTTTGTTTT
32733261 CAAAATGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.11, C:0.11, G:0.03, T:0.75
Consensus pattern (19 bp):
TTTAATCTTTCTTTGTTTT
Found at i:32744931 original size:19 final size:19
Alignment explanation
Indices: 32744907--32744945 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
32744897 TTTAGCCACT
32744907 TAACTTTAATTAATTTTCA
1 TAACTTTAATTAATTTTCA
32744926 TAACTTTAATTAATTTTCA
1 TAACTTTAATTAATTTTCA
32744945 T
1 T
32744946 TTTGGTCAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.10, G:0.00, T:0.54
Consensus pattern (19 bp):
TAACTTTAATTAATTTTCA
Found at i:32747492 original size:2 final size:2
Alignment explanation
Indices: 32747485--32747511 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32747475 GACTTGATGG
32747485 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
32747512 AAAGCCTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:32749431 original size:43 final size:43
Alignment explanation
Indices: 32749359--32749440 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
32749349 GCAAATTCCT
* **
32749359 GGTCTTTCCTATAGGTAGCAAGATGTCAGCTTTAAAATGACTG
1 GGTCTTTCCTATAGGTAACAAGAAATCAGCTTTAAAATGACTG
*
32749402 GGTCTTTCCTATAGGTAATAAGAAATCAGCTTTAAAATG
1 GGTCTTTCCTATAGGTAACAAGAAATCAGCTTTAAAATG
32749441 TAGATACAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.33
Consensus pattern (43 bp):
GGTCTTTCCTATAGGTAACAAGAAATCAGCTTTAAAATGACTG
Found at i:32752872 original size:28 final size:28
Alignment explanation
Indices: 32752839--32752894 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
32752829 ATTTTATAAA
32752839 CTATAAAAGAACCTAATTAAAAAATTTT
1 CTATAAAAGAACCTAATTAAAAAATTTT
*
32752867 CTATAAAAGAACCTAATTAAAAATTTTT
1 CTATAAAAGAACCTAATTAAAAAATTTT
32752895 TTATTTTAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.52, C:0.11, G:0.04, T:0.34
Consensus pattern (28 bp):
CTATAAAAGAACCTAATTAAAAAATTTT
Done.