Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 102 of 182
Found at i:30698138 original size:50 final size:49
Alignment explanation
Indices: 30698030--30698144 Score: 142
Period size: 50 Copynumber: 2.3 Consensus size: 49
30698020 GCGAACACAC
* * * *
30698030 CATAGCTTGTATGAGCTTACCAATTTTAGCTTGTGAGAGCTTACCAATT
1 CATAGCTCGTATGAGCTTACCAATTTCAGCTCGTGAGAGCATACCAATT
* * *
30698079 C-TCAACTCGTATGAGCTTACCGATTTCCAGCTCGTGAGAGCATACCGATT
1 CAT-AGCTCGTATGAGCTTACCAATTT-CAGCTCGTGAGAGCATACCAATT
30698129 CATAGCTCGTATGAGC
1 CATAGCTCGTATGAGC
30698145 ATACATGTAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
48 1 0.02
49 21 0.38
50 32 0.58
51 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.31
Consensus pattern (49 bp):
CATAGCTCGTATGAGCTTACCAATTTCAGCTCGTGAGAGCATACCAATT
Found at i:30698145 original size:25 final size:25
Alignment explanation
Indices: 30698084--30698148 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
30698074 CAATTCTCAA
*
30698084 CTCGTATGAGCTTACCGATTTCCAG
1 CTCGTATGAGCATACCGATTTCCAG
*
30698109 CTCGTGA-GAGCATACCGA-TTCATAG
1 CTCGT-ATGAGCATACCGATTTC-CAG
30698134 CTCGTATGAGCATAC
1 CTCGTATGAGCATAC
30698149 ATGTACAGGA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
24 4 0.11
25 30 0.86
26 1 0.03
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.28
Consensus pattern (25 bp):
CTCGTATGAGCATACCGATTTCCAG
Found at i:30706593 original size:25 final size:25
Alignment explanation
Indices: 30706529--30706595 Score: 89
Period size: 25 Copynumber: 2.7 Consensus size: 25
30706519 GATACTCCAC
*
30706529 AGCTTGTGTGAGCACACCGATTCAT
1 AGCTTGTGTGAGCATACCGATTCAT
** *
30706554 AGCTCATGTGAGCATATCGATTCAT
1 AGCTTGTGTGAGCATACCGATTCAT
*
30706579 AGCTTGTGTAAGCATAC
1 AGCTTGTGTGAGCATAC
30706596 ATGTACAGGA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (25 bp):
AGCTTGTGTGAGCATACCGATTCAT
Found at i:30715156 original size:41 final size:41
Alignment explanation
Indices: 30715085--30715205 Score: 145
Period size: 41 Copynumber: 3.0 Consensus size: 41
30715075 CTAATAAAAT
* *
30715085 ACACCAACACGAAGCTTGCTAGGC-TCAAAGCTTGATATAAC
1 ACACCAGCACGAAGCTTGCTAGGCAT-AAAGCCTGATATAAC
* * *
30715126 ACACCAGCACGAAGCCTGCTTGGCATAAAGCCTGATATAAT
1 ACACCAGCACGAAGCTTGCTAGGCATAAAGCCTGATATAAC
*** *
30715167 ACATTGGCACGAAGCTTGCTAGGCACAAAGCCTGATATA
1 ACACCAGCACGAAGCTTGCTAGGCATAAAGCCTGATATA
30715206 GTACACCACA
Statistics
Matches: 68, Mismatches: 11, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
41 67 0.99
42 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (41 bp):
ACACCAGCACGAAGCTTGCTAGGCATAAAGCCTGATATAAC
Found at i:30716701 original size:29 final size:29
Alignment explanation
Indices: 30716656--30716854 Score: 209
Period size: 29 Copynumber: 6.8 Consensus size: 29
30716646 ATCAAATAAA
* *
30716656 GAAAAGGGATGGTTTCGACCATTGAATAT
1 GAAAAGGGATGGCTTCGACCATCGAATAT
30716685 GAAAAGGGATGGCTTCGACCATCGAATAT
1 GAAAAGGGATGGCTTCGACCATCGAATAT
** * *
30716714 GAGTAGGGATGACTTCGACCAACGAATAT
1 GAAAAGGGATGGCTTCGACCATCGAATAT
* * *
30716743 GAAAAGGGATGACTTCAACCATCTAATAT
1 GAAAAGGGATGGCTTCGACCATCGAATAT
* *
30716772 GAAAGGGGATGGCTTTGACCATCGAATAT
1 GAAAAGGGATGGCTTCGACCATCGAATAT
* * * * * *
30716801 CAAAATGGATGGTTTCAACCATCGATTAAA
1 GAAAAGGGATGGCTTCGACCATCGAAT-AT
* * *
30716831 GAGAAGGGATGGTTTCGACTATCG
1 GAAAAGGGATGGCTTCGACCATCG
30716855 TTTAGCACAC
Statistics
Matches: 140, Mismatches: 29, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
29 120 0.86
30 20 0.14
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (29 bp):
GAAAAGGGATGGCTTCGACCATCGAATAT
Found at i:30720329 original size:40 final size:40
Alignment explanation
Indices: 30720187--30720322 Score: 191
Period size: 40 Copynumber: 3.4 Consensus size: 40
30720177 TTCTTTATAA
* * ** *
30720187 TAGATTCAGTTGGTATGGCTTGAGGGCACATACGTTTCAG
1 TAGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAG
*
30720227 TAGATTCAGTAGGTATGGCTCGAAAGCGCATACATTTCAG
1 TAGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAG
*
30720267 TAGATTCAGTAGGTATGGCTCGAAAGTGCATACGTTTCAG
1 TAGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAG
**
30720307 TAGATTTGGTAGGTAT
1 TAGATTCAGTAGGTAT
30720323 CACTCGATGA
Statistics
Matches: 86, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 86 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (40 bp):
TAGATTCAGTAGGTATGGCTCGAAAGCGCATACGTTTCAG
Found at i:30722405 original size:45 final size:45
Alignment explanation
Indices: 30722309--30722462 Score: 134
Period size: 45 Copynumber: 3.4 Consensus size: 45
30722299 ATGTCATGGT
* * * **
30722309 GTCTTTCAACCATTGTCTTATTCATTT-CTCATCATGTTGCCATAGC
1 GTCTTTCAACTATGGTCTTATTCATTTGAT--TCATGACGCCATAGC
* *
30722355 ATCTTTCAACTATGGTCTTATTCATTTGATTCATGACGTCATAGC
1 GTCTTTCAACTATGGTCTTATTCATTTGATTCATGACGCCATAGC
* * * * * *
30722400 GTCTTTCAGCTATGGTCTTACTCGA-TAGAATCGTGATC-CCATAAC
1 GTCTTTCAACTATGGTCTTATTC-ATTTGATTCATGA-CGCCATAGC
30722445 GTCTTTCAACTATGGTCT
1 GTCTTTCAACTATGGTCT
30722463 CACTCGTTTC
Statistics
Matches: 89, Mismatches: 16, Indels: 7
0.79 0.14 0.06
Matches are distributed among these distances:
45 62 0.70
46 26 0.29
47 1 0.01
ACGTcount: A:0.22, C:0.23, G:0.14, T:0.40
Consensus pattern (45 bp):
GTCTTTCAACTATGGTCTTATTCATTTGATTCATGACGCCATAGC
Found at i:30722504 original size:24 final size:24
Alignment explanation
Indices: 30722477--30722550 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
30722467 CGTTTCTAGC
30722477 ATGGTCTCATAATGTCTTTCAACT
1 ATGGTCTCATAATGTCTTTCAACT
* * * *
30722501 ATGGTCTTAT-TTAT-TTTCGA-T
1 ATGGTCTCATAATGTCTTTCAACT
*
30722522 ATAGTGC-CATAATGTCTTTCAACT
1 ATGGT-CTCATAATGTCTTTCAACT
30722546 ATGGT
1 ATGGT
30722551 TTTAATCATT
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
21 7 0.19
22 8 0.22
23 7 0.19
24 14 0.39
ACGTcount: A:0.24, C:0.16, G:0.15, T:0.45
Consensus pattern (24 bp):
ATGGTCTCATAATGTCTTTCAACT
Found at i:30728060 original size:16 final size:16
Alignment explanation
Indices: 30728036--30728073 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
30728026 CTTCAGCATG
30728036 AAGCCTGCTAGGCACA
1 AAGCCTGCTAGGCACA
* *
30728052 AAGCTTGCTATGCACA
1 AAGCCTGCTAGGCACA
30728068 AAGCCT
1 AAGCCT
30728074 AATATACTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.32, C:0.29, G:0.21, T:0.18
Consensus pattern (16 bp):
AAGCCTGCTAGGCACA
Found at i:30728464 original size:45 final size:45
Alignment explanation
Indices: 30728342--30728464 Score: 174
Period size: 45 Copynumber: 2.7 Consensus size: 45
30728332 TTGATTTGTT
* * *
30728342 ATGCTATAGCATCTTTCAGCTATGGTCTTACTCGATAGAATCGTA
1 ATGCCATAACATCTTTCAGCTATGGTCTTACTTGATAGAATCGTA
* * * *
30728387 ATGCCATTACATCTTTCAGCTATAGTCTTACTTGATATAATCGTG
1 ATGCCATAACATCTTTCAGCTATGGTCTTACTTGATAGAATCGTA
*
30728432 ATGCCATAACGTCTTTCAGCTATGGTCTTACTT
1 ATGCCATAACATCTTTCAGCTATGGTCTTACTT
30728465 ATTTCTAGTA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
45 68 1.00
ACGTcount: A:0.25, C:0.21, G:0.15, T:0.38
Consensus pattern (45 bp):
ATGCCATAACATCTTTCAGCTATGGTCTTACTTGATAGAATCGTA
Found at i:30728537 original size:45 final size:45
Alignment explanation
Indices: 30728432--30728551 Score: 136
Period size: 45 Copynumber: 2.7 Consensus size: 45
30728422 TATAATCGTG
** * * *
30728432 ATGCCATAACGTCTTTCAGCTATGGTCTTACTTATTTCTAGTATG
1 ATGCCATAGTGTCTTTCAACTATGGTCTTACTTATTTCGAGTATA
* *
30728477 GTGCCATAGTGTCTTTCAACTATGGTCTTATTTATTTCCGA-TATA
1 ATGCCATAGTGTCTTTCAACTATGGTCTTACTTATTT-CGAGTATA
*
30728522 ATGCTATAGAT-TCTTTCAACTATGGTCTTA
1 ATGCCATAG-TGTCTTTCAACTATGGTCTTA
30728552 ATCATTTTCT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
45 61 0.95
46 3 0.05
ACGTcount: A:0.23, C:0.18, G:0.15, T:0.43
Consensus pattern (45 bp):
ATGCCATAGTGTCTTTCAACTATGGTCTTACTTATTTCGAGTATA
Found at i:30730846 original size:34 final size:35
Alignment explanation
Indices: 30730793--30730859 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
30730783 CAAACACCAA
*
30730793 AAAATATTTTTCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
30730828 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
30730860 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.10, G:0.09, T:0.34
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:30731222 original size:3 final size:3
Alignment explanation
Indices: 30731214--30731238 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
30731204 TTTCAAACAA
30731214 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
30731239 TACTTGAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:30732320 original size:29 final size:30
Alignment explanation
Indices: 30732262--30732331 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
30732252 ATAGAATAGC
*
30732262 CAAACCTTTATGAAAATGCTCAAATGAAGAT
1 CAAACCTTT-TGAAAATGCTCAAATAAAGAT
* *
30732293 CAAACCTTTT-AAAGTGGTCAAATAAAGAT
1 CAAACCTTTTGAAAATGCTCAAATAAAGAT
* *
30732322 AAAATCTTTT
1 CAAACCTTTT
30732332 TTAATGTACT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 24 0.71
30 1 0.03
31 9 0.26
ACGTcount: A:0.44, C:0.14, G:0.11, T:0.30
Consensus pattern (30 bp):
CAAACCTTTTGAAAATGCTCAAATAAAGAT
Found at i:30738493 original size:74 final size:74
Alignment explanation
Indices: 30738348--30738495 Score: 224
Period size: 74 Copynumber: 2.0 Consensus size: 74
30738338 CCATATAAGC
* * * *
30738348 ACTAATTAAATAGAAGTTTGAACCCCTTTAGACTTAATAAATATTTTGTAATTTTTCATACCTAA
1 ACTAATCAAATAGAAGTTTAAACCCCTTTAGACTAAATAAATATTTTCTAATTTTTCATACCTAA
30738413 GTTAAAAAG
66 GTTAAAAAG
* *
30738422 ACTAATCAAATAGAAGTTTAAACCCCTTTAGACTAAATAACTATTTTTCTAGTTTTTCATACCTA
1 ACTAATCAAATAGAAGTTTAAACCCCTTTAGACTAAATAAATA-TTTTCTAATTTTTCATACCTA
*
30738487 AGTAAAAAA
65 AGTTAAAAA
30738496 AGGGTATCTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
74 39 0.59
75 27 0.41
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.36
Consensus pattern (74 bp):
ACTAATCAAATAGAAGTTTAAACCCCTTTAGACTAAATAAATATTTTCTAATTTTTCATACCTAA
GTTAAAAAG
Found at i:30740966 original size:6 final size:6
Alignment explanation
Indices: 30740952--30740985 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
30740942 AGGATTGCAA
*
30740952 ATTTCC ATTTTC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
30740986 TCAGAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.26, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:30740969 original size:12 final size:12
Alignment explanation
Indices: 30740952--30740988 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
30740942 AGGATTGCAA
30740952 ATTTCCATTTTC
1 ATTTCCATTTTC
*
30740964 ATTTCCATTTCC
1 ATTTCCATTTTC
30740976 ATTTCCATTTTC
1 ATTTCCATTTTC
30740988 A
1 A
30740989 GAAACCTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.19, C:0.27, G:0.00, T:0.54
Consensus pattern (12 bp):
ATTTCCATTTTC
Found at i:30749877 original size:43 final size:43
Alignment explanation
Indices: 30749816--30749901 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
30749806 TATGTGATTG
* *
30749816 ATATTGGAATGACAAAGATAAGAAATGAATATGAGATGAGAAA
1 ATATTGAAATGACAAAGATAAGAAACGAATATGAGATGAGAAA
* *
30749859 ATATTGAAATGGCAAAGATGAGAAACGAATATGAGATGAGAAA
1 ATATTGAAATGACAAAGATAAGAAACGAATATGAGATGAGAAA
30749902 TGAAATATGA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.52, C:0.03, G:0.24, T:0.20
Consensus pattern (43 bp):
ATATTGAAATGACAAAGATAAGAAACGAATATGAGATGAGAAA
Found at i:30749910 original size:19 final size:19
Alignment explanation
Indices: 30749874--30749924 Score: 68
Period size: 18 Copynumber: 2.7 Consensus size: 19
30749864 GAAATGGCAA
*
30749874 AGATGAGAAACG-AATATG
1 AGATGAGAAATGAAATATG
30749892 AGATGAGAAATGAAATATG
1 AGATGAGAAATGAAATATG
*
30749911 AAATGATGAAATGA
1 AGATGA-GAAATGA
30749925 GATGTGAAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 11 0.38
19 11 0.38
20 7 0.24
ACGTcount: A:0.53, C:0.02, G:0.25, T:0.20
Consensus pattern (19 bp):
AGATGAGAAATGAAATATG
Found at i:30749919 original size:27 final size:27
Alignment explanation
Indices: 30749889--30749943 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
30749879 AGAAACGAAT
*
30749889 ATGAGATGAGAAATGAAA-TATGAAATG
1 ATGAAATGAGAAATGAAACT-TGAAATG
**
30749916 ATGAAATGAGATGTGAAACTTGAAATG
1 ATGAAATGAGAAATGAAACTTGAAATG
30749943 A
1 A
30749944 ATTCAAGTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 23 0.96
28 1 0.04
ACGTcount: A:0.49, C:0.02, G:0.25, T:0.24
Consensus pattern (27 bp):
ATGAAATGAGAAATGAAACTTGAAATG
Found at i:30749933 original size:20 final size:19
Alignment explanation
Indices: 30749876--30749924 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
30749866 AATGGCAAAG
* *
30749876 ATGAGAAACG-AATATGAG
1 ATGAGAAATGAAATATGAA
30749894 ATGAGAAATGAAATATGAA
1 ATGAGAAATGAAATATGAA
30749913 ATGATGAAATGA
1 ATGA-GAAATGA
30749925 GATGTGAAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
18 9 0.33
19 11 0.41
20 7 0.26
ACGTcount: A:0.53, C:0.02, G:0.24, T:0.20
Consensus pattern (19 bp):
ATGAGAAATGAAATATGAA
Found at i:30750822 original size:54 final size:54
Alignment explanation
Indices: 30750735--30750874 Score: 172
Period size: 54 Copynumber: 2.6 Consensus size: 54
30750725 CGTGTGTCAC
* * * *
30750735 ACACGGGCAACACACGCGGGCGTGTGACCCAAGTCAGTGAGTTACAAGAGCTGAG
1 ACACGGGCAA-AGACACGGCCGTGTGTCCCAAGTCAGTGAGTTACAAGAGCTGAG
*** * * *
30750790 ACACGGGCTGGGACACGGCCGTGTGTCTCAAGTCAGTGAGTTACACGGGCTGAG
1 ACACGGGCAAAGACACGGCCGTGTGTCCCAAGTCAGTGAGTTACAAGAGCTGAG
*
30750844 ACATGGGCAAAGACACGGCCGTGTGTCCCAA
1 ACACGGGCAAAGACACGGCCGTGTGTCCCAA
30750875 CTCCGAGAGT
Statistics
Matches: 70, Mismatches: 15, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
54 62 0.89
55 8 0.11
ACGTcount: A:0.26, C:0.26, G:0.34, T:0.15
Consensus pattern (54 bp):
ACACGGGCAAAGACACGGCCGTGTGTCCCAAGTCAGTGAGTTACAAGAGCTGAG
Found at i:30759247 original size:11 final size:11
Alignment explanation
Indices: 30759231--30759260 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
30759221 AAAAAAAAAG
30759231 TATCGATTTAA
1 TATCGATTTAA
30759242 TATCGATTTAA
1 TATCGATTTAA
30759253 TATCGATT
1 TATCGATT
30759261 CAAACTATGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.47
Consensus pattern (11 bp):
TATCGATTTAA
Found at i:30765805 original size:28 final size:28
Alignment explanation
Indices: 30765775--30765899 Score: 187
Period size: 28 Copynumber: 4.5 Consensus size: 28
30765765 CAGTACAGTG
* ** *
30765775 TGGGCCTTAGCCCAATACAGCAATGATG
1 TGGGCCTTAGCCCAATACAGTAACAATA
*
30765803 TGGGCCTTATCCCAATACAGTAACAATA
1 TGGGCCTTAGCCCAATACAGTAACAATA
*
30765831 TGGGCCTTAGCCCAAAACAGTAACAATA
1 TGGGCCTTAGCCCAATACAGTAACAATA
30765859 TGGGCCTTAGCCCAATACAGTAACAATA
1 TGGGCCTTAGCCCAATACAGTAACAATA
*
30765887 TAGGCCTTAGCCC
1 TGGGCCTTAGCCC
30765900 TAAACAATAT
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 88 1.00
ACGTcount: A:0.33, C:0.26, G:0.19, T:0.22
Consensus pattern (28 bp):
TGGGCCTTAGCCCAATACAGTAACAATA
Found at i:30766045 original size:26 final size:26
Alignment explanation
Indices: 30766016--30766095 Score: 108
Period size: 26 Copynumber: 3.1 Consensus size: 26
30766006 AACACACCAA
*
30766016 TATCGCAGCAAAGCTACCAATAATAG
1 TATCGCAGCAAAGCTACCAATAACAG
* *
30766042 TATCACAGCAAAGCTGCCAATAACA-
1 TATCGCAGCAAAGCTACCAATAACAG
* *
30766067 TATTGCAGCAAAGCTACCAGTAACAG
1 TATCGCAGCAAAGCTACCAATAACAG
30766093 TAT
1 TAT
30766096 ACTTCCTCCA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
25 21 0.46
26 25 0.54
ACGTcount: A:0.41, C:0.24, G:0.15, T:0.20
Consensus pattern (26 bp):
TATCGCAGCAAAGCTACCAATAACAG
Found at i:30766081 original size:25 final size:25
Alignment explanation
Indices: 30766015--30766091 Score: 100
Period size: 25 Copynumber: 3.0 Consensus size: 25
30766005 CAACACACCA
*
30766015 ATATCGCAGCAAAGCTACCAATAAT
1 ATATCGCAGCAAAGCTACCAATAAC
* *
30766040 AGTATCACAGCAAAGCTGCCAATAAC
1 A-TATCGCAGCAAAGCTACCAATAAC
* *
30766066 ATATTGCAGCAAAGCTACCAGTAAC
1 ATATCGCAGCAAAGCTACCAATAAC
30766091 A
1 A
30766092 GTATACTTCC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 22 0.50
26 22 0.50
ACGTcount: A:0.43, C:0.25, G:0.14, T:0.18
Consensus pattern (25 bp):
ATATCGCAGCAAAGCTACCAATAAC
Found at i:30766272 original size:27 final size:27
Alignment explanation
Indices: 30766242--30766650 Score: 298
Period size: 27 Copynumber: 15.3 Consensus size: 27
30766232 GGTTATAATA
30766242 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
30766269 GTCATTTTACCCTATGGGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
30766296 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * * *
30766323 ATCATTTCACGCT-TCGAGGGTATTTCA
1 GTCATTTTACCCTAT-GGGGGTATTTCG
* ** *
30766350 GTCA-TTT-CACT-TTAGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
30766374 GTCATTTTACCTTATGGGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
30766401 GTGATTTTACCTTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
30766428 ATCATTTCT-CCCTTTAGGGGTATTTCA
1 GTCATTT-TACCCTATGGGGGTATTTCG
* * * * *
30766455 ATTATTTCACCCTTTGGGGGGTATTTCA
1 GTCATTTTACCCTAT-GGGGGTATTTCG
* * * *
30766483 ATCATTTTTCCC-ATCGAGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGGTATTTCG
* * *
30766510 GTCATTTTACCCT-TCGAGGGAATTTTG
1 GTCATTTTACCCTAT-GGGGGTATTTCG
* * *
30766537 GTCATTTTACCTTGTAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*** *
30766564 GTCATTTTACCCTGCAGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* ** *
30766591 GTCATTTTATCCT-TCAGAGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
30766617 GTCATTTT-CCCT-TCGGGGGCATTTCA
1 GTCATTTTACCCTAT-GGGGGTATTTCG
30766643 GTCATTTT
1 GTCATTTT
30766651 CCCACAAATC
Statistics
Matches: 313, Mismatches: 59, Indels: 21
0.80 0.15 0.05
Matches are distributed among these distances:
24 15 0.05
25 11 0.04
26 36 0.12
27 229 0.73
28 22 0.07
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:30769118 original size:14 final size:14
Alignment explanation
Indices: 30769099--30769125 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
30769089 ATTTGGTATG
30769099 AAATGAAATTTTAA
1 AAATGAAATTTTAA
30769113 AAATGAAATTTTA
1 AAATGAAATTTTA
30769126 CCATTTTGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (14 bp):
AAATGAAATTTTAA
Found at i:30770395 original size:11 final size:11
Alignment explanation
Indices: 30770352--30770486 Score: 52
Period size: 11 Copynumber: 12.0 Consensus size: 11
30770342 AATATTAAAT
30770352 TTAATTTAATA
1 TTAATTTAATA
*
30770363 CTTATTTTAATA
1 -TTAATTTAATA
*
30770375 GT-ATTT--TA
1 TTAATTTAATA
30770383 TTAATTTAATA
1 TTAATTTAATA
*
30770394 TTAAAGTCATT-ATC
1 TT-AA-T--TTAATA
30770408 TTAATATTAA-A
1 TTAAT-TTAATA
30770419 TTAAATTTAATA
1 TT-AATTTAATA
* *
30770431 TTTATCTTATAGA
1 TTAAT-TTA-ATA
* *
30770444 TAAATATT-CTA
1 TTAAT-TTAATA
30770455 TTAATTTAATA
1 TTAATTTAATA
30770466 --AGATTTAATA
1 TTA-ATTTAATA
30770476 TTAATTTAATA
1 TTAATTTAATA
30770487 AAATAATAAC
Statistics
Matches: 92, Mismatches: 15, Indels: 33
0.66 0.11 0.24
Matches are distributed among these distances:
8 3 0.03
9 5 0.05
10 13 0.14
11 31 0.34
12 24 0.26
13 10 0.11
14 4 0.04
15 2 0.02
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.51
Consensus pattern (11 bp):
TTAATTTAATA
Found at i:30772036 original size:43 final size:43
Alignment explanation
Indices: 30771961--30772104 Score: 182
Period size: 43 Copynumber: 3.3 Consensus size: 43
30771951 TGTCCCATAC
* *
30771961 ATGGTCTTACATGGAAATCTCATATCGATGCCAATATCCCAGCT
1 ATGGTCTTACA-CGAAGTCTCATATCGATGCCAATATCCCAGCT
**
30772005 ATGGTCTTACACGAAGTCTCATATCGATGCCAATAGGCCAGCT
1 ATGGTCTTACACGAAGTCTCATATCGATGCCAATATCCCAGCT
* * * *
30772048 ATGGTCTTACACGAAGTTTCATATCAATGAC-ATATCCCAGAT
1 ATGGTCTTACACGAAGTCTCATATCGATGCCAATATCCCAGCT
* *
30772090 ATTGTCTTATACGAA
1 ATGGTCTTACACGAA
30772105 ATCTTAAATC
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 21 0.24
43 56 0.64
44 11 0.12
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.30
Consensus pattern (43 bp):
ATGGTCTTACACGAAGTCTCATATCGATGCCAATATCCCAGCT
Found at i:30772149 original size:48 final size:48
Alignment explanation
Indices: 30772074--30772261 Score: 162
Period size: 48 Copynumber: 3.9 Consensus size: 48
30772064 TTTCATATCA
* *
30772074 ATGACATATCCCAGATATTGTCTTATAC-GAAATCTTAAATCAATGCTG
1 ATGACATATCCCAGATATGGTCTTATACAG-AATCTCAAATCAATGCTG
* * * * ** *
30772122 ATGCCATATCCTATATATGGTCTTATACAGGATCTCAAATGGATGTTG
1 ATGACATATCCCAGATATGGTCTTATACAGAATCTCAAATCAATGCTG
** * * * *
30772170 ATGACATATCCCAGATATGGTCTTATATGGGATCTCAAAACGATGCCG
1 ATGACATATCCCAGATATGGTCTTATACAGAATCTCAAATCAATGCTG
* ** * ** *
30772218 ATGCCATATTTCAGATATAGTCTTATATGGGATCTCAAATCAAT
1 ATGACATATCCCAGATATGGTCTTATACAGAATCTCAAATCAAT
30772262 TCGGCAATAT
Statistics
Matches: 115, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
48 114 0.99
49 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (48 bp):
ATGACATATCCCAGATATGGTCTTATACAGAATCTCAAATCAATGCTG
Found at i:30772221 original size:96 final size:96
Alignment explanation
Indices: 30772074--30772257 Score: 235
Period size: 96 Copynumber: 1.9 Consensus size: 96
30772064 TTTCATATCA
* * * * *
30772074 ATGACATATCCCAGATATTGTCTTATACGAAATCTTAAATCAATGCTGATGCCATATC-CTATAT
1 ATGACATATCCCAGATATGGTCTTATACGAAATCTCAAAACAATGCCGATGCCATATCTC-AGAT
*
30772138 ATGGTCTTATACAGGATCTCAAATGGATGTTG
65 ATAGTCTTATACAGGATCTCAAATGGATGTTG
* ** * *
30772170 ATGACATATCCCAGATATGGTCTTATATGGGATCTCAAAACGATGCCGATGCCATATTTCAGATA
1 ATGACATATCCCAGATATGGTCTTATACGAAATCTCAAAACAATGCCGATGCCATATCTCAGATA
**
30772235 TAGTCTTATATGGGATCTCAAAT
66 TAGTCTTATACAGGATCTCAAAT
30772258 CAATTCGGCA
Statistics
Matches: 74, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
96 73 0.99
97 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (96 bp):
ATGACATATCCCAGATATGGTCTTATACGAAATCTCAAAACAATGCCGATGCCATATCTCAGATA
TAGTCTTATACAGGATCTCAAATGGATGTTG
Found at i:30772287 original size:30 final size:30
Alignment explanation
Indices: 30772253--30772347 Score: 109
Period size: 30 Copynumber: 3.1 Consensus size: 30
30772243 TATGGGATCT
30772253 CAAATCAATTCGGCAATATATATACATATA
1 CAAATCAATTCGGCAATATATATACATATA
** * *
30772283 CAAATCAATTCGAAAATGTATATATCTACATA
1 CAAATCAATTCGGCAATATATATA-C-ATATA
* *
30772315 TAAATCAATTCAGCAATATATAATACATATA
1 CAAATCAATTCGGCAATATAT-ATACATATA
30772346 CA
1 CA
30772348 TTTGAATTCA
Statistics
Matches: 51, Mismatches: 11, Indels: 5
0.76 0.16 0.07
Matches are distributed among these distances:
30 21 0.41
31 6 0.12
32 21 0.41
33 3 0.06
ACGTcount: A:0.48, C:0.16, G:0.05, T:0.31
Consensus pattern (30 bp):
CAAATCAATTCGGCAATATATATACATATA
Found at i:30781766 original size:9 final size:10
Alignment explanation
Indices: 30781746--30781774 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
30781736 ATTGCGTGTT
30781746 TGAATAGAAA
1 TGAATAGAAA
30781756 TGAAT-GAAA
1 TGAATAGAAA
30781765 TGAATAGAAA
1 TGAATAGAAA
30781775 ATGAGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:30782066 original size:25 final size:25
Alignment explanation
Indices: 30782022--30782070 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
30782012 ATGAATTTTC
**
30782022 TCAAAATTTTATCGTGGTAAAATCG
1 TCAAAATTTTATCGCAGTAAAATCG
*
30782047 TCAAAATTTTATTGCAGTAAAATC
1 TCAAAATTTTATCGCAGTAAAATC
30782071 AGGATGAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.39, C:0.12, G:0.12, T:0.37
Consensus pattern (25 bp):
TCAAAATTTTATCGCAGTAAAATCG
Found at i:30782520 original size:24 final size:24
Alignment explanation
Indices: 30782493--30782541 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
30782483 TGTTTCTATT
30782493 AAAGAAGAGAGAACTTTCATTTTC
1 AAAGAAGAGAGAACTTTCATTTTC
*
30782517 AAAGAAGAGAGAATTTTCATTTTC
1 AAAGAAGAGAGAACTTTCATTTTC
30782541 A
1 A
30782542 CCCCAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.10, G:0.16, T:0.31
Consensus pattern (24 bp):
AAAGAAGAGAGAACTTTCATTTTC
Found at i:30787069 original size:25 final size:25
Alignment explanation
Indices: 30787018--30787107 Score: 94
Period size: 25 Copynumber: 3.6 Consensus size: 25
30787008 GTACATGTAT
* *
30787018 GCTCATACGAGCTGTA-AATGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
*
30787042 GCTCCT-CTGAGCTGAATAACGGTAA
1 GCTCATAC-GAGCTGAATAACGGTAA
* *
30787067 GCTCATACGAGCTGAGTATCGGTAA
1 GCTCATACGAGCTGAATAACGGTAA
* *
30787092 GCACATAAGAGCTGAA
1 GCTCATACGAGCTGAA
30787108 ATCGATAACC
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
23 1 0.02
24 12 0.22
25 40 0.74
26 1 0.02
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGGTAA
Found at i:30799274 original size:70 final size:70
Alignment explanation
Indices: 30799192--30799404 Score: 417
Period size: 70 Copynumber: 3.0 Consensus size: 70
30799182 ATACAATATC
30799192 TAAAAATTATTTATATCATAATTTAATTCTTATTAACATAATATTTTATATTTTAAATAAAAGCT
1 TAAAAATTATTTATATCATAATTTAATTCTTATTAACATAATATTTTATATTTTAAATAAAAGCT
30799257 AAATA
66 AAATA
30799262 TAAAAATTATTTATATCATAATTTAATTCTTATTAACATAATATTTTATATTTTAAATAAAAGCT
1 TAAAAATTATTTATATCATAATTTAATTCTTATTAACATAATATTTTATATTTTAAATAAAAGCT
30799327 AAATA
66 AAATA
*
30799332 TAAAAATTATTTATATCATAATTTAATTCTTATTAACATAATATTTTATATTTTAAATAAAAGTT
1 TAAAAATTATTTATATCATAATTTAATTCTTATTAACATAATATTTTATATTTTAAATAAAAGCT
30799397 AAATA
66 AAATA
30799402 TAA
1 TAA
30799405 GTCTTGATAC
Statistics
Matches: 142, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 142 1.00
ACGTcount: A:0.47, C:0.05, G:0.01, T:0.46
Consensus pattern (70 bp):
TAAAAATTATTTATATCATAATTTAATTCTTATTAACATAATATTTTATATTTTAAATAAAAGCT
AAATA
Found at i:30799380 original size:35 final size:35
Alignment explanation
Indices: 30799201--30799382 Score: 142
Period size: 35 Copynumber: 5.2 Consensus size: 35
30799191 CTAAAAATTA
30799201 TTTATATCATAATTTAATTCTTATTAACATAATAT
1 TTTATATCATAATTTAATTCTTATTAACATAATAT
** * * ** *
30799236 TTTATATTTTAAATAAAAGCTAAATATAA-A-AAT-T
1 TTTATATCATAATTTAATTCT-TAT-TAACATAATAT
30799270 ATTTATATCATAATTTAATTCTTATTAACATAATAT
1 -TTTATATCATAATTTAATTCTTATTAACATAATAT
** * * ** *
30799306 TTTATATTTTAAATAAAAGCTAAATATAA-A-AAT-T
1 TTTATATCATAATTTAATTCT-TAT-TAACATAATAT
30799340 ATTTATATCATAATTTAATTCTTATTAACATAATAT
1 -TTTATATCATAATTTAATTCTTATTAACATAATAT
30799376 TTTATAT
1 TTTATAT
30799383 TTTAAATAAA
Statistics
Matches: 107, Mismatches: 28, Indels: 24
0.67 0.18 0.15
Matches are distributed among these distances:
33 6 0.06
34 8 0.07
35 79 0.74
36 8 0.07
37 6 0.06
ACGTcount: A:0.45, C:0.06, G:0.01, T:0.48
Consensus pattern (35 bp):
TTTATATCATAATTTAATTCTTATTAACATAATAT
Found at i:30802075 original size:21 final size:19
Alignment explanation
Indices: 30802019--30802079 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
30802009 TAATTATTTA
30802019 TTAAATT-TAATTAGAATAT
1 TTAAATTATAATTA-AATAT
* *
30802038 ATAAATTATATTTAAATAT
1 TTAAATTATAATTAAATAT
30802057 TTAAATATAGTAATTAAATAT
1 TTAAAT-TA-TAATTAAATAT
30802078 TT
1 TT
30802080 GTAATTAGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
19 16 0.46
20 7 0.20
21 12 0.34
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.48
Consensus pattern (19 bp):
TTAAATTATAATTAAATAT
Found at i:30802088 original size:21 final size:20
Alignment explanation
Indices: 30802026--30802079 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
30802016 TTATTAAATT
*
30802026 TAATTAGAATATATAAATTA-
1 TAATTA-AATATTTAAATTAG
*
30802046 TATTTAAATATTTAAATATAG
1 TAATTAAATATTTAAAT-TAG
30802067 TAATTAAATATTT
1 TAATTAAATATTT
30802080 GTAATTAGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 10 0.34
20 7 0.24
21 12 0.41
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (20 bp):
TAATTAAATATTTAAATTAG
Found at i:30804928 original size:24 final size:24
Alignment explanation
Indices: 30804894--30804962 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
30804884 GACAAATAAA
30804894 AATAATAATACAGT-ATAACTTTTA-
1 AATAATAATACA-TAATAA-TTTTAG
*
30804918 AGTAATAATACATAATAATTTTAG
1 AATAATAATACATAATAATTTTAG
*
30804942 AATAATAATACACAATAATTT
1 AATAATAATACATAATAATTT
30804963 CAAAAATATG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
23 6 0.15
24 34 0.85
ACGTcount: A:0.52, C:0.07, G:0.04, T:0.36
Consensus pattern (24 bp):
AATAATAATACATAATAATTTTAG
Found at i:30807445 original size:30 final size:29
Alignment explanation
Indices: 30807387--30807443 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
30807377 CTCCAATTTC
30807387 ACCAGCAGAGGGAAAAGAACGTTTGGGGA
1 ACCAGCAGAGGGAAAAGAACGTTTGGGGA
30807416 ACCAGCAGAGGGGAAAA-AACGTTTGGGG
1 ACCAGCAGA-GGGAAAAGAACGTTTGGGG
30807444 GAGAAGACAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.37, C:0.14, G:0.39, T:0.11
Consensus pattern (29 bp):
ACCAGCAGAGGGAAAAGAACGTTTGGGGA
Found at i:30808041 original size:13 final size:13
Alignment explanation
Indices: 30808023--30808052 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
30808013 TTTTAGTTTT
30808023 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
30808036 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
30808049 ATTG
1 ATTG
30808053 AGTTTGGGCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:30811415 original size:40 final size:40
Alignment explanation
Indices: 30811385--30811594 Score: 314
Period size: 40 Copynumber: 5.3 Consensus size: 40
30811375 GGACTAAGAT
* * * *
30811385 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
30811425 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
30811465 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* *
30811505 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
* * * * *
30811545 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
30811584 CCGAAGGCATT
1 CCGAAGGCATT
30811595 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 11, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
39 34 0.21
40 125 0.79
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
Found at i:30811469 original size:80 final size:80
Alignment explanation
Indices: 30811332--30811594 Score: 316
Period size: 80 Copynumber: 3.3 Consensus size: 80
30811322 TTGAATGCTG
* * * * * **
30811332 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
30811395 TTGTGCGAGATACTAAA
64 TTGTGCGAGTTACTAAA
* * *
30811412 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
30811477 GTGCGAGTTATTAAA
66 GTGCGAGTTACTAAA
* * * *
30811492 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
30811556 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
30811571 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
30811595 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 22, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
79 36 0.23
80 117 0.74
81 6 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:30811546 original size:120 final size:120
Alignment explanation
Indices: 30811332--30811594 Score: 325
Period size: 120 Copynumber: 2.2 Consensus size: 120
30811322 TTGAATGCTG
* * *
30811332 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
30811396 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * * **
30811452 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * *
30811515 TCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
30811571 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
30811595 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 19, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
119 35 0.29
120 81 0.66
121 6 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:30811614 original size:79 final size:80
Alignment explanation
Indices: 30811385--30811629 Score: 253
Period size: 80 Copynumber: 3.1 Consensus size: 80
30811375 GGACTAAGAT
* * * * * ** * *
30811385 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTA-TT
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAG-GAGCT
30811449 AAATCCGGGTTAAGTC
65 AAATCCGGGTTAAGTC
* * * ** ** *
30811465 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
30811530 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
30811545 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
30811609 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
30811623 CCGAAGG
1 CCGAAGG
30811630 TACGTGATTT
Statistics
Matches: 144, Mismatches: 20, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
78 14 0.10
79 47 0.33
80 83 0.58
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:30819365 original size:40 final size:40
Alignment explanation
Indices: 30819321--30819544 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
30819311 AAGTGAATAT
* * * * **
30819321 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
30819361 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
30819401 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
30819441 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
30819481 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
30819520 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
30819545 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:30819419 original size:80 final size:80
Alignment explanation
Indices: 30819282--30819544 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
30819272 TTGAATGCTG
* * * * *
30819282 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
30819344 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
30819362 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
30819427 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
30819442 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
30819506 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
30819521 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
30819545 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:30819496 original size:120 final size:120
Alignment explanation
Indices: 30819282--30819544 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
30819272 TTGAATGCTG
* * *
30819282 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
30819346 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
30819402 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
30819464 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
30819521 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
30819545 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:30823779 original size:23 final size:23
Alignment explanation
Indices: 30823723--30823775 Score: 63
Period size: 25 Copynumber: 2.3 Consensus size: 23
30823713 AATAAAAACA
30823723 AAAACATATGTATAAAATATATAT
1 AAAACATATGTAT-AAATATATAT
* *
30823747 ATAAGCATATGTAT-ACTATATAT
1 A-AAACATATGTATAAATATATAT
30823770 AAAACA
1 AAAACA
30823776 ATATATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
22 4 0.16
23 9 0.36
24 1 0.04
25 11 0.44
ACGTcount: A:0.55, C:0.08, G:0.06, T:0.32
Consensus pattern (23 bp):
AAAACATATGTATAAATATATAT
Found at i:30823782 original size:21 final size:23
Alignment explanation
Indices: 30823740--30823783 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
30823730 ATGTATAAAA
* *
30823740 TATATATATAAGCATATGTATAC
1 TATATATATAAACATATATATAC
30823763 TATATATA-AAACAATATATAT
1 TATATATATAAAC-ATATATAT
30823784 TACATAAAAC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 3 0.17
23 15 0.83
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.39
Consensus pattern (23 bp):
TATATATATAAACATATATATAC
Found at i:30823834 original size:16 final size:17
Alignment explanation
Indices: 30823808--30823839 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
30823798 CATGCGCATG
30823808 AATATAAAAATAATAAA
1 AATATAAAAATAATAAA
30823825 AATA-AAAAATAATAA
1 AATATAAAAATAATAA
30823840 TAATGATACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (17 bp):
AATATAAAAATAATAAA
Found at i:30824355 original size:19 final size:19
Alignment explanation
Indices: 30824331--30824373 Score: 77
Period size: 19 Copynumber: 2.3 Consensus size: 19
30824321 GTAATATTGG
30824331 ATATCATATCTAAGATTAC
1 ATATCATATCTAAGATTAC
*
30824350 ATATCATATCTAAGATTGC
1 ATATCATATCTAAGATTAC
30824369 ATATC
1 ATATC
30824374 CTTGAAGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.40, C:0.16, G:0.07, T:0.37
Consensus pattern (19 bp):
ATATCATATCTAAGATTAC
Found at i:30824974 original size:45 final size:44
Alignment explanation
Indices: 30824915--30825040 Score: 153
Period size: 45 Copynumber: 2.8 Consensus size: 44
30824905 ATTTGTTTAT
* * * *
30824915 TTAGTCTTCCCCACTGCAATTTCAGGGGGATAAGACTTGATTTC
1 TTAGTCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGATTAC
* * *
30824959 TTGAGTCTGCTCCACTGCAACTTCAGGAGGATAAGGCTTGCTTAC
1 TT-AGTCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGATTAC
** *
30825004 TTAGTCTGCTCCACTATAACTTCAGGGAGATAAGACT
1 TTAGTCTGCTCCACTGCAACTTCAGGGGGATAAGACT
30825041 AGATGCGATC
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
44 32 0.46
45 37 0.54
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (44 bp):
TTAGTCTGCTCCACTGCAACTTCAGGGGGATAAGACTTGATTAC
Found at i:30825025 original size:44 final size:44
Alignment explanation
Indices: 30824925--30825040 Score: 135
Period size: 44 Copynumber: 2.6 Consensus size: 44
30824915 TTAGTCTTCC
* * *
30824925 CCACTGCAATTTCAGGGGGATAAGACTTGATTTCTTGAGTCTGCT
1 CCACTACAACTTCA-GGGGATAAGACTTGATTACTTGAGTCTGCT
* * *
30824970 CCACTGCAACTTCAGGAGGATAAGGCTTGCTTACTT-AGTCTGCT
1 CCACTACAACTTCAGG-GGATAAGACTTGATTACTTGAGTCTGCT
*
30825014 CCACTATAACTTCAGGGAGATAAGACT
1 CCACTACAACTTCAGGG-GATAAGACT
30825041 AGATGCGATC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 1 0.02
44 32 0.52
45 29 0.47
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (44 bp):
CCACTACAACTTCAGGGGATAAGACTTGATTACTTGAGTCTGCT
Found at i:30825388 original size:44 final size:44
Alignment explanation
Indices: 30825338--30825433 Score: 104
Period size: 44 Copynumber: 2.2 Consensus size: 44
30825328 CACTGTTGCT
* * * * *
30825338 CAGGGAGACAAGG-TTTACAATCTTTAATCTATTCCATTGCTGAC
1 CAGGGAGA-AAGGATTCACAATCTTCAACCTATTCCACTACTGAC
* * *
30825382 CAGGGAGATAGGATTCACAATCTTCAGCCTATTCCACTACTGTC
1 CAGGGAGAAAGGATTCACAATCTTCAACCTATTCCACTACTGAC
30825426 CAGGGAGA
1 CAGGGAGA
30825434 TAGGGCTGGG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
43 3 0.07
44 40 0.93
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (44 bp):
CAGGGAGAAAGGATTCACAATCTTCAACCTATTCCACTACTGAC
Found at i:30825644 original size:88 final size:88
Alignment explanation
Indices: 30825437--30826720 Score: 1468
Period size: 88 Copynumber: 14.6 Consensus size: 88
30825427 AGGGAGATAG
* * * * * *
30825437 GGCTGGGGTCATCGATCTGCGTCGTTGTCAGTGCAGGAACGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
30825502 T-CACTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCTAGGGAGGCAA
* *
30825524 GGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAATCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
30825589 TCCGCTGTAACCTAAGGAGGCAA
66 TCCGCTGCAACCTAGGGAGGCAA
* * * *
30825612 GGCTGGTGCCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTGACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
30825677 GCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCTAGGGAGGCAA
* *
30825700 GGCTAGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
30825765 TCCGCTGCAACCTAGGGAGGCAA
66 TCCGCTGCAACCTAGGGAGGCAA
* * * * * *
30825788 CGCTAGTGTCTTCAATCTACTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGA
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* **** * *
30825853 TTCGCTG-TTGGTGCAGGAAAGCAA
66 TCCGCTGCAACCT--AGGGAGGCAA
* * * * ** * * * **** * * * * ** *
30825877 GATCTGCTATTTTTAACCTGCTCCGTTG-CAACCCA-GAGAGGCAAG-GCTGGTGTCTTCGATCT
1 G-GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGA-AGGCAAGATCTGCTATTTTTAACCT
* ** *** *
30825939 GTTTTGCTGTCGGTGC-AGGAAGGCAA
64 GCTCCGCTG-C-AACCTAGGGAGGCAA
* * * * ** *
30825965 GATCTGTTATTTTTAACCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTG
1 G-GCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTG
* * *
30826030 CTCTGCTGTAACCCAGGGAGGCAA
65 CTCCGCTGCAACCTAGGGAGGCAA
* *
30826054 GGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
*
30826119 TCCGCTGCAACCCAGGGAGGCAA
66 TCCGCTGCAACCTAGGGAGGCAA
* * *
30826142 GGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCAAAGATCTGCTATTTTTAACCTA
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGC-AAGATCTGCTATTTTTAACCTG
* *
30826207 CTCCACTACAATCC-AGGGAGGCAA
65 CTCCGCTGCAA-CCTAGGGAGGCAA
* * * *
30826231 GGTTGGTGTCTTTGATCTGTTTCGCTGTCGGCGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
30826296 TCCGCTGCAACCCAGGGGGGCAA
66 TCCGCTGCAACCTAGGGAGGCAA
* *
30826319 GGCTAGTGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
30826384 TCCGCTACAACCTAGGGAGGGAA
66 TCCGCTGCAACCTAGGGAGGCAA
*
30826407 GGTTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* * *
30826472 TCCGCTACAACCCAGGGAGGCAC
66 TCCGCTGCAACCTAGGGAGGCAA
* * * * * *
30826495 GGTTGGTGTCTTCGATCTGCTTCGCTATCGGTACAAGAAGGCAAGATCTGCAATTTTTAACCTAC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
30826560 TCCGCTGCAACCTAGGGAGGCAA
66 TCCGCTGCAACCTAGGGAGGCAA
* * * ** *
30826583 GGCTAGTGTCTTCAATCTGCTTCACTGTCGGTATAGGAAAGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
30826648 T-CGACTGCAACCTAGGGAGGCAA
66 TCCG-CTGCAACCTAGGGAGGCAA
* *
30826671 GGCTGGTATCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCCAGATCTG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
30826721 TTATCTTCAC
Statistics
Matches: 1020, Mismatches: 161, Indels: 31
0.84 0.13 0.03
Matches are distributed among these distances:
87 63 0.06
88 805 0.79
89 114 0.11
90 36 0.04
91 2 0.00
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.28
Consensus pattern (88 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
TCCGCTGCAACCTAGGGAGGCAA
Found at i:30825886 original size:133 final size:132
Alignment explanation
Indices: 30825453--30826389 Score: 712
Period size: 133 Copynumber: 7.1 Consensus size: 132
30825443 GGTCATCGAT
* * * * *
30825453 CTGCGTCGTTGTCAGTGCAGGAACGCAAGATCTGCTATTTTTAACCTGCT-CACTGCAACCCAGG
1 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAGG
* *
30825517 GAGGCAAGGCTGGTGTCTTTGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
66 GAGGCAAGGCT-GTGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
*
30825582 AAT
130 AAC
* * * * * *** ** * * * ****
30825585 CTGCTCCGCTGTAAC-CT-AAGG-AGGCAAG-GCTGGTGCCTTCGATCTGCTTCGTTGTCGGTGC
1 CTGCTTCGCTGT--CGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTG-CAACCC
* * * * * * * ** **** * * *
30825646 AGGAAGGCAAGATCTGTTATTTTTGACCTGCGCCGCTG-CAACCCAGGGAGGCAAG-GCTAG-TG
63 AGGGAGGCAAG-GCTG-TGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCT-GCTA
* * *
30825708 TCTTTGAT
125 TTTTTAAC
*
30825716 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCTAGG
1 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAGG
* * *
30825781 GAGGCAACGCTAGTGTCTTCAATCTACTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
66 GAGGCAAGGCT-GTGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
30825846 AAC
130 AAC
* * * * *
30825849 CTGATTCGCTGTTGGTGCAGGAAAGCAAGATCTGCTATTTTTAACCTGCTCCGTTGCAACCCAGA
1 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAGG
** * *
30825914 GAGGCAAGGCTGGTGTCTTCGATCTGTTTTGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTT
66 GAGGCAAGGCT-GTGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
30825979 AAC
130 AAC
* *
30825982 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGTAACCCAGG
1 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAGG
* *
30826047 GAGGCAAGGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
66 GAGGCAAGGCTG-TGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
30826112 AAC
130 AAC
* **** * * * * ** * * ****
30826115 CTGCTCCGCTG-CAACCCAGGGAGGCAAG-GCTAG-TGTCTTCGATCTGCTTCGCTGTCGGTGCA
1 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCT-GCTATTTTTAACCTGCTCCGCTG-CAACCCA
* * * * * ** * * * * ** * * * * *
30826177 AGAAGGCAAAGATCTGCTATTTTTAACCTACTCCACT-ACAATCCAGGGAGGCAAGGT-TGGTGT
64 GGGAGGC-AAG-GCTG-TGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTAT
* * *
30826240 CTTTGAT
126 TTTTAAC
* *
30826247 CTGTTTCGCTGTCGGCGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAGG
1 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAGG
*
30826312 GGGGCAAGGCTAGTGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
66 GAGGCAAGGCT-GTGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
30826377 AAC
130 AAC
*
30826380 CTGCTCCGCT
1 CTGCTTCGCT
30826390 ACAACCTAGG
Statistics
Matches: 594, Mismatches: 185, Indels: 51
0.72 0.22 0.06
Matches are distributed among these distances:
129 1 0.00
130 13 0.02
131 77 0.13
132 125 0.21
133 346 0.58
134 32 0.05
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (132 bp):
CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAGG
GAGGCAAGGCTGTGTCTTCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
AC
Found at i:30826089 original size:221 final size:221
Alignment explanation
Indices: 30825540--30826205 Score: 842
Period size: 221 Copynumber: 3.0 Consensus size: 221
30825530 TGTCTTTGAT
* * *
30825540 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAATCTGCTCCGCTGTAACCTAAG
1 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAATCTGCTCTGCTGTAACCCAGG
* * *
30825605 GAGGCAAGGCTGGTGCCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTT
66 GAGGCAAGGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
* * *
30825670 GACCTGCGCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTTGATCTGCTTCGCTGTCGGTGCA
131 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCA
30825735 GGAAGGCAAGATCTGCTATTTTTAAC
196 GGAAGGCAAGATCTGCTATTTTTAAC
* *** * * * * **
30825761 CTGCTCCGCTG-C-AACCTAGGGAGGC-A-A-C-GCTAGTGTCTTCAATCTACT-TCACTGTCGG
1 CTGCTTCGCTGTCGGTGC-AGGAAGGCAAGATCTGCTA-T-T-TTTAATCTGCTCT-GCTGT-AA
** * * * * * ** * * * * *
30825819 TGCAGGAAGGCAAGATCTGCTATTTTTAACCTGATTCGCTGTTGGTGCAGGAAAGCAAGATCTGC
60 CCCAGGGAGGCAAG-GCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGC
* * * * *
30825884 TATTTTTAACCTGCTCCGTTGCAACCCAGAGAGGCAAGGCTGGTGTCTTCGATCTGTTTTGCTGT
124 TATTTTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGT
*
30825949 CGGTGCAGGAAGGCAAGATCTGTTATTTTTAAC
189 CGGTGCAGGAAGGCAAGATCTGCTATTTTTAAC
*
30825982 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCTGCTGTAACCCAGG
1 CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAATCTGCTCTGCTGTAACCCAGG
30826047 GAGGCAAGGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
66 GAGGCAAGGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
30826112 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCA
131 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCA
*
30826177 AGAAGGCAAAGATCTGCTATTTTTAAC
196 GGAAGGC-AAGATCTGCTATTTTTAAC
30826204 CT
1 CT
30826206 ACTCCACTAC
Statistics
Matches: 360, Mismatches: 70, Indels: 29
0.78 0.15 0.06
Matches are distributed among these distances:
216 4 0.01
217 2 0.01
218 2 0.01
219 15 0.04
220 17 0.05
221 258 0.72
222 39 0.11
223 14 0.04
224 3 0.01
225 2 0.01
226 4 0.01
ACGTcount: A:0.20, C:0.23, G:0.27, T:0.29
Consensus pattern (221 bp):
CTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAATCTGCTCTGCTGTAACCCAGG
GAGGCAAGGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCA
GGAAGGCAAGATCTGCTATTTTTAAC
Found at i:30826275 original size:221 final size:219
Alignment explanation
Indices: 30825606--30826275 Score: 795
Period size: 221 Copynumber: 3.0 Consensus size: 219
30825596 TAACCTAAGG
* * * *
30825606 AGGCAAGGCTGGTGCCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTG
1 AGGCAAGGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
* *
30825671 ACCTGCGCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTTGATCTGCTTCGCTGTCGGTGCAG
66 ACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAG
* * * *
30825736 GAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAA-CCTAGGGAGGCAACGCTAGTGTCTT
131 GAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAATCC-AGGGAGGCAAGGTTGGTGTCTT
* * * *
30825800 CAATCTACTTCACTGTCGGTGCAGGA
195 TAATCT-GTTCGCTGTCGGCGCAGGA
* * * * ** * * * * *
30825826 AGGCAAGATCTGCTATTTTTAACCTGATTCGCTGTTGGTGCAGGAAAGCAAGATCTGCTATTTTT
1 AGGCAAG-GCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTT
* * * * *
30825891 AACCTGCTCCGTTGCAACCCAGAGAGGCAAGGCTGGTGTCTTCGATCTGTTTTGCTGTCGGTGCA
65 AACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCA
* * * ** * * * * * *
30825956 GGAAGGCAAGATCTGTTATTTTTAACCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATT
130 GGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT-ACAATCCAGGGAGGCAAGGT-TGGTGTC
* * ** * *
30826021 TTTAACCTGCTCTGCTGT-AACCCAGGG
193 TTTAATCTGTTC-GCTGTCGGCGCAGGA
30826048 AGGCAAGGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
1 AGGCAAGGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
*
30826113 ACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAA
66 ACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAG
* *
30826178 GAAGGCAAAGATCTGCTATTTTTAACCTACTCCACTACAATCCAGGGAGGCAAGGTTGGTGTCTT
131 GAAGGC-AAGATCTGCTATTTTTAACCTGCTCCGCTACAATCCAGGGAGGCAAGGTTGGTGTCTT
*
30826243 TGATCTGTTTCGCTGTCGGCGCAGGA
195 TAATCTG-TTCGCTGTCGGCGCAGGA
30826269 AGGCAAG
1 AGGCAAG
30826276 ATCTGCTATT
Statistics
Matches: 360, Mismatches: 82, Indels: 15
0.79 0.18 0.03
Matches are distributed among these distances:
220 23 0.06
221 275 0.76
222 48 0.13
223 14 0.04
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (219 bp):
AGGCAAGGCTGATGTCTTCGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTA
ACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAG
GAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAATCCAGGGAGGCAAGGTTGGTGTCTTT
AATCTGTTCGCTGTCGGCGCAGGA
Found at i:30828948 original size:25 final size:26
Alignment explanation
Indices: 30828897--30828963 Score: 73
Period size: 26 Copynumber: 2.5 Consensus size: 26
30828887 AAGAAAATCC
**
30828897 AAAAGAATGAAAGAATAATGATTTCA
1 AAAAGAATGAAAGAATAATGAGCTCA
* *
30828923 AAAAGAATGAAATAATATTG-GCTCA
1 AAAAGAATGAAAGAATAATGAGCTCA
30828948 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
30828964 TGTATTTTAT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
25 7 0.21
26 23 0.68
27 4 0.12
ACGTcount: A:0.57, C:0.06, G:0.16, T:0.21
Consensus pattern (26 bp):
AAAAGAATGAAAGAATAATGAGCTCA
Found at i:30832976 original size:3 final size:3
Alignment explanation
Indices: 30832957--30832995 Score: 51
Period size: 3 Copynumber: 12.7 Consensus size: 3
30832947 GCGCATGAAT
* *
30832957 ATA AAA ATA AAA ATA ATA ATAA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA AT
30832996 GATACAAGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
3 28 0.90
4 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:30832982 original size:16 final size:16
Alignment explanation
Indices: 30832957--30832994 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
30832947 GCGCATGAAT
30832957 ATAA-AAATAAAAATA
1 ATAATAAATAAAAATA
*
30832972 ATAATAAATAATAATA
1 ATAATAAATAAAAATA
30832988 ATAATAA
1 ATAATAA
30832995 TGATACAAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 4 0.19
16 17 0.81
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (16 bp):
ATAATAAATAAAAATA
Found at i:30833473 original size:22 final size:21
Alignment explanation
Indices: 30833438--30833514 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 21
30833428 AAAAGGTATC
* *
30833438 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
30833459 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
30833482 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
30833501 TATATATCATATCT
1 TACAAATCATATCT
30833515 AAGATTGCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
19 17 0.37
21 4 0.09
22 15 0.33
23 10 0.22
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.38
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:30833481 original size:23 final size:22
Alignment explanation
Indices: 30833438--30833495 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
30833428 AAAAGGTATC
* *
30833438 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
30833459 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
30833482 TGCATATCATATCT
1 TACAAATCATATCT
30833496 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:30833498 original size:19 final size:19
Alignment explanation
Indices: 30833474--30833527 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
30833464 AATCATATCT
30833474 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
**
30833493 TCTAAGATTATATATCATA
1 TCTAAGATTGCATATCATA
30833512 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
30833528 CTTGAAGATT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.37, C:0.15, G:0.09, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:30835789 original size:7 final size:7
Alignment explanation
Indices: 30835777--30835803 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
30835767 CTAATTGGCT
30835777 AAATTAG
1 AAATTAG
30835784 AAATTAG
1 AAATTAG
30835791 AAATTAG
1 AAATTAG
30835798 AAATTA
1 AAATTA
30835804 TAAAAATTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.59, C:0.00, G:0.11, T:0.30
Consensus pattern (7 bp):
AAATTAG
Found at i:30836556 original size:3 final size:3
Alignment explanation
Indices: 30836542--30836596 Score: 58
Period size: 3 Copynumber: 18.0 Consensus size: 3
30836532 TATATGTTAT
* * *
30836542 TAA TAA TTA TAA TAA TAA GTAA AAA GAA -ATA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA -TAA TAA TAA TA-A TAA TAA TAA TAA TAA
30836588 TAA TAA TAA
1 TAA TAA TAA
30836597 CATTATCATC
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 1 0.02
3 40 0.89
4 4 0.09
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:30837610 original size:20 final size:20
Alignment explanation
Indices: 30837595--30837665 Score: 97
Period size: 20 Copynumber: 3.5 Consensus size: 20
30837585 TTGCACATAT
30837595 GTGCCTCTGTTTGCACTTTG
1 GTGCCTCTGTTTGCACTTTG
* * *
30837615 GTGTCTTTGTATGCACTTTG
1 GTGCCTCTGTTTGCACTTTG
*
30837635 GTGCCTCTGTTTGCACTTCG
1 GTGCCTCTGTTTGCACTTTG
*
30837655 GTGTCTCTGTT
1 GTGCCTCTGTT
30837666 GGCATTGCCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.06, C:0.23, G:0.25, T:0.46
Consensus pattern (20 bp):
GTGCCTCTGTTTGCACTTTG
Found at i:30846317 original size:20 final size:20
Alignment explanation
Indices: 30846294--30846339 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
30846284 TCCACGCTAC
* *
30846294 CGTGTGAACAGGCACGCAGT
1 CGTGTGAACAGGCACACACT
*
30846314 CGTGTGAATAGGCACACACT
1 CGTGTGAACAGGCACACACT
30846334 CGTGTG
1 CGTGTG
30846340 GCCACCCATG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.24, G:0.33, T:0.20
Consensus pattern (20 bp):
CGTGTGAACAGGCACACACT
Found at i:30847153 original size:24 final size:24
Alignment explanation
Indices: 30847121--30847182 Score: 79
Period size: 24 Copynumber: 2.6 Consensus size: 24
30847111 TCAAAGAAGT
* **
30847121 TGATAGTAATAGTGTGAGTTATAA
1 TGATAGTAATAGTGTAAACTATAA
*
30847145 TGATAGTAATAGTGTAAACTATGA
1 TGATAGTAATAGTGTAAACTATAA
*
30847169 TGATAGTGATAGTG
1 TGATAGTAATAGTG
30847183 AACTTTGTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.37, C:0.02, G:0.26, T:0.35
Consensus pattern (24 bp):
TGATAGTAATAGTGTAAACTATAA
Found at i:30850074 original size:13 final size:13
Alignment explanation
Indices: 30850056--30850080 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30850046 CATATGAACT
30850056 AGTTAAATGGTGA
1 AGTTAAATGGTGA
30850069 AGTTAAATGGTG
1 AGTTAAATGGTG
30850081 TTCTCATTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.32, T:0.32
Consensus pattern (13 bp):
AGTTAAATGGTGA
Found at i:30850291 original size:22 final size:22
Alignment explanation
Indices: 30850266--30850310 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
30850256 TCTATTACTT
*
30850266 AAACATAGTATCCAATTATACC
1 AAACATAATATCCAATTATACC
*
30850288 AAACATAATATCCATTTATACC
1 AAACATAATATCCAATTATACC
30850310 A
1 A
30850311 GCTCAATCGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.22, G:0.02, T:0.29
Consensus pattern (22 bp):
AAACATAATATCCAATTATACC
Found at i:30851397 original size:18 final size:19
Alignment explanation
Indices: 30851369--30851411 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
30851359 GCTGTGTTGC
* *
30851369 GACACAGGGCTGAATGTGG
1 GACACAGGGCTAAACGTGG
*
30851388 GACACA-GGCTAAACGTGT
1 GACACAGGGCTAAACGTGG
30851406 GACACA
1 GACACA
30851412 AGTATTATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 15 0.71
19 6 0.29
ACGTcount: A:0.33, C:0.21, G:0.33, T:0.14
Consensus pattern (19 bp):
GACACAGGGCTAAACGTGG
Found at i:30852597 original size:13 final size:13
Alignment explanation
Indices: 30852579--30852655 Score: 118
Period size: 13 Copynumber: 5.9 Consensus size: 13
30852569 AGTTCTTCAT
30852579 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
30852592 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
* *
30852605 TGCTTTTCAAAAG
1 TGCTTTTGAGAAG
30852618 TGCTTTTGAGAAG
1 TGCTTTTGAGAAG
* *
30852631 TGGTTTTCAGAAG
1 TGCTTTTGAGAAG
30852644 TGCTTTTGAGAA
1 TGCTTTTGAGAA
30852656 ATTTGAGTGT
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 56 1.00
ACGTcount: A:0.25, C:0.09, G:0.27, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:30860539 original size:58 final size:55
Alignment explanation
Indices: 30860469--30860623 Score: 163
Period size: 57 Copynumber: 2.7 Consensus size: 55
30860459 TAGAGAGTTC
* *
30860469 AACTA-TAATTAAACTTAATCATTTTAA-TATTAAATTAATATAATACTTATCAAGAT
1 AACTATTAATTAAACTTAAT-A-TTAAACTATTAAATTAATAAAATA-TTATCAAGAT
*
30860525 AACTATTAGATTAAATTTAATATTAAATCTATTAAATTAATAAAATATTATCAAGAT
1 AACTATTA-ATTAAACTTAATATTAAA-CTATTAAATTAATAAAATATTATCAAGAT
* * *
30860582 AAGTATTTAA-TATAATTTAATATTAAATCTATTAAAATAATA
1 AACTA-TTAATTA-AACTTAATATTAAA-CTATTAAATTAATA
30860624 TTATTTTTGG
Statistics
Matches: 88, Mismatches: 5, Indels: 11
0.85 0.05 0.11
Matches are distributed among these distances:
56 11 0.12
57 46 0.52
58 31 0.35
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (55 bp):
AACTATTAATTAAACTTAATATTAAACTATTAAATTAATAAAATATTATCAAGAT
Found at i:30860600 original size:57 final size:58
Alignment explanation
Indices: 30860496--30860623 Score: 190
Period size: 57 Copynumber: 2.2 Consensus size: 58
30860486 ATCATTTTAA
*
30860496 TATTAAATTAATATAATACTTATCAAGATAACTATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAAAATACTTATCAAGATAACTATTAGATTAAATTTAATATTAAATC
*
30860554 TATTAAATTAATAAAATA-TTATCAAGATAAGTATTTA-A-TATAATTTAATATTAAATC
1 TATTAAATTAATAAAATACTTATCAAGATAACTA-TTAGATTA-AATTTAATATTAAATC
*
30860611 TATTAAAATAATA
1 TATTAAATTAATA
30860624 TTATTTTTGG
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
56 2 0.03
57 43 0.66
58 20 0.31
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (58 bp):
TATTAAATTAATAAAATACTTATCAAGATAACTATTAGATTAAATTTAATATTAAATC
Found at i:30863284 original size:27 final size:27
Alignment explanation
Indices: 30863252--30863307 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
30863242 CTAGTTGATG
30863252 TAAGTTCGTGCTACATATAATATGTTA
1 TAAGTTCGTGCTACATATAATATGTTA
*
30863279 TAAGTTCGTGTTACATATAATATGTTA
1 TAAGTTCGTGCTACATATAATATGTTA
30863306 TA
1 TA
30863308 TTAAATTCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (27 bp):
TAAGTTCGTGCTACATATAATATGTTA
Found at i:30864893 original size:40 final size:40
Alignment explanation
Indices: 30864848--30865052 Score: 250
Period size: 40 Copynumber: 5.1 Consensus size: 40
30864838 CAATTGAATG
**
30864848 AATGCACATAAGTGCGTCTGTTTGTACTTCGGTACCCCTA
1 AATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * * * * *
30864888 AATGCACATACGTGCTCCTATTTGTACTTTGGTACCCTTG
1 AATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTA
* * * * *
30864928 AATGCATATAAGTGCCCCTGTTTCTACCTCGATACCCCTT
1 AATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTA
*
30864968 AATGCACATAAGTGCCGCTGTTTGTACTTCGGTACCCCTGA
1 AATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCT-A
* *
30865009 AA-GCACATCAGTGCCCCTATTTGTACTTCGGTACCCCTA
1 AATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTA
30865048 AATGC
1 AATGC
30865053 CTTTACGTGC
Statistics
Matches: 137, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
39 3 0.02
40 132 0.96
41 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.32
Consensus pattern (40 bp):
AATGCACATAAGTGCCCCTGTTTGTACTTCGGTACCCCTA
Found at i:30865063 original size:120 final size:119
Alignment explanation
Indices: 30864848--30865069 Score: 324
Period size: 120 Copynumber: 1.9 Consensus size: 119
30864838 CAATTGAATG
*
30864848 AATGCACATAAGTGCGTCTGTTTGTACTTCGGTACCCCTAAATGCACATACGTGCTCCTATTTGT
1 AATGCACATAAGTGCGTCTGTTTGTACTTCGGTACCCCTAAATGCACATACGTGCCCCTATTTGT
* * *
30864913 ACTTTGGTACCCTTGAATGCATATAAGTGCCCCTGTTTCTACCTCGATACCCCTT
66 ACTTCGGTACCCCTAAATGCATATAAGTG-CCCTGTTTCTACCTCGATACCCCTT
30864968 AATGCACATAAGTGCCG-CTGTTTGTACTTCGGTACCCCTGAAA-GCACAT-CAGTGCCCCTATT
1 AATGCACATAAGTG-CGTCTGTTTGTACTTCGGTACCCCT-AAATGCACATAC-GTGCCCCTATT
* * *
30865030 TGTACTTCGGTACCCCTAAATGCCTTTACGTGCCCTGTTT
63 TGTACTTCGGTACCCCTAAATGCATATAAGTGCCCTGTTT
30865070 ATACTCTGGT
Statistics
Matches: 92, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
119 9 0.10
120 78 0.85
121 5 0.05
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.33
Consensus pattern (119 bp):
AATGCACATAAGTGCGTCTGTTTGTACTTCGGTACCCCTAAATGCACATACGTGCCCCTATTTGT
ACTTCGGTACCCCTAAATGCATATAAGTGCCCTGTTTCTACCTCGATACCCCTT
Found at i:30871825 original size:39 final size:40
Alignment explanation
Indices: 30871709--30871902 Score: 212
Period size: 40 Copynumber: 4.9 Consensus size: 40
30871699 AACAATTGAA
* ** *
30871709 TGAATGCACATAAGTGCGTCTGTTTGTTCTTCGGTACCCC
1 TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
* *
30871749 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
* * *
30871789 TGACTGCACATATGTG-CCATGTTTGTACTTCGGTACCCT
1 TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
* * **
30871828 TGAATGCACATAAGTGCCCCTATTTGTACTTTAGTACCCC
1 TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
* ** * *
30871868 TAAATGCATTTATGTG-CCCTGTTTATACTCCGGTA
1 TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTA
30871903 ACTCTAAATT
Statistics
Matches: 127, Mismatches: 26, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
39 48 0.38
40 79 0.62
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.35
Consensus pattern (40 bp):
TGAATGCACATATGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:30871865 original size:79 final size:79
Alignment explanation
Indices: 30871711--30871902 Score: 242
Period size: 79 Copynumber: 2.4 Consensus size: 79
30871701 CAATTGAATG
* * *
30871711 AATGCACATAAGTGCGTC-TGTTTGTTCTTCGGTACCCCTGAATGCACATACGTGCCCCTATTTG
1 AATGCACATATGTGC--CATGTTTGTACTTCGGTACCCCTGAATGCACATAAGTGCCCCTATTTG
* *
30871775 TACTTCGGTACCCCTG
64 TACTTCAGTACCCCTA
* *
30871791 ACTGCACATATGTGCCATGTTTGTACTTCGGTACCCTTGAATGCACATAAGTGCCCCTATTTGTA
1 AATGCACATATGTGCCATGTTTGTACTTCGGTACCCCTGAATGCACATAAGTGCCCCTATTTGTA
*
30871856 CTTTAGTACCCCTA
66 CTTCAGTACCCCTA
** * * *
30871870 AATGCATTTATGTGCCCTGTTTATACTCCGGTA
1 AATGCACATATGTGCCATGTTTGTACTTCGGTA
30871903 ACTCTAAATT
Statistics
Matches: 97, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
78 1 0.01
79 83 0.86
80 13 0.13
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (79 bp):
AATGCACATATGTGCCATGTTTGTACTTCGGTACCCCTGAATGCACATAAGTGCCCCTATTTGTA
CTTCAGTACCCCTA
Found at i:30876071 original size:6 final size:6
Alignment explanation
Indices: 30876052--30876089 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
30876042 TTGATAATTA
*
30876052 CCTCTT CCTTTT CCTCTT CCTCTT CCTC-T CGCTCTT CC
1 CCTCTT CCTCTT CCTCTT CCTCTT CCTCTT C-CTCTT CC
30876090 ACGATTTCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 2 0.07
6 24 0.86
7 2 0.07
ACGTcount: A:0.00, C:0.50, G:0.03, T:0.47
Consensus pattern (6 bp):
CCTCTT
Found at i:30877311 original size:56 final size:56
Alignment explanation
Indices: 30877225--30877336 Score: 224
Period size: 56 Copynumber: 2.0 Consensus size: 56
30877215 CTATGCACCT
30877225 TTGAACCAAACTAAATATGCAATATTAAGTTTAAATTTTAAATGAGTAGGATATGA
1 TTGAACCAAACTAAATATGCAATATTAAGTTTAAATTTTAAATGAGTAGGATATGA
30877281 TTGAACCAAACTAAATATGCAATATTAAGTTTAAATTTTAAATGAGTAGGATATGA
1 TTGAACCAAACTAAATATGCAATATTAAGTTTAAATTTTAAATGAGTAGGATATGA
30877337 GGTAGATGTA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.45, C:0.07, G:0.14, T:0.34
Consensus pattern (56 bp):
TTGAACCAAACTAAATATGCAATATTAAGTTTAAATTTTAAATGAGTAGGATATGA
Found at i:30877487 original size:22 final size:20
Alignment explanation
Indices: 30877436--30877488 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
30877426 TACAATGACT
*
30877436 AAAATTTTAAAATTTAATAA
1 AAAATTTTAAAATTAAATAA
*
30877456 AATAA-ATTAATAATTAAAATAA
1 AA-AATTTTAA-AATT-AAATAA
30877478 AAAATTTTAAA
1 AAAATTTTAAA
30877489 CTTGAATGAC
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
20 6 0.23
21 9 0.35
22 11 0.42
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
AAAATTTTAAAATTAAATAA
Found at i:30882117 original size:235 final size:234
Alignment explanation
Indices: 30881768--30882244 Score: 590
Period size: 237 Copynumber: 2.0 Consensus size: 234
30881758 AATCACATTT
* * * *
30881768 AAATATTGATTTAAAATTTACGAAAATTTGTGTAATAATATTTGGTACAGTGAAATTTTTAAACT
1 AAATAATGATTTAAAATTTACGAAAATATGTGTAATAATATTTAGTACAATGAAATTTTTAAACT
* ** * * *
30881833 CCATAAGTAGATTTAAGGAGTTTCGAGTATCTTATAAAAGCATAGTAAATTATTAAATATATATA
66 CCATAAATAGATTTAAAAAGTTAC-AGTATCTTATAAAAGCATAGTAAATAATTAAAAATATATA
**
30881898 TTTAAAAAAGAAATACATCAATTTTTTAAAATTGCTTATGTA-CCAAATACTC-ACCTATTAATT
130 TTT--AAAA-AAAT--ATCAATTTTTTAAAAGGGCTT-TGTAGCCAAATACTCTACCTATT-ATT
*
30881961 ATTATAATATTACTTT-A-AATGTAATATTTAGATTTCTATAACAAA
188 ATAATAATATTACTTTAATAATGTAATATTTAGATTTCTATAACAAA
* * * *
30882006 AAATAATGATTTAAAA-TTATGAAAATATG-GATAGTGATATTTAGTACAATGAATTTTTTAAAC
1 AAATAATGATTTAAAATTTACGAAAATATGTG-TAATAATATTTAGTACAATGAAATTTTTAAAC
* ** *
30882069 TCTATAAATAGATTTAAAAAGTTAC-GTATCTTATAAGGGTATAGTAAATAATTAAAAATATATA
65 TCCATAAATAGATTTAAAAAGTTACAGTATCTTATAAAAGCATAGTAAATAATTAAAAATATATA
* **
30882133 TTTAAAAAAATATCAATTTTTTAAGAGGGCTTTGTATGCCAAATACTCTTTCTATTATTATAATA
130 TTTAAAAAAATATCAATTTTTTAAAAGGGCTTTGTA-GCCAAATACTCTACCTATTATTATAATA
30882198 ATATTACTTTAAATAATGTAATATTTAGATTTCTATAACAAA
194 ATATTACTTT-AATAATGTAATATTTAGATTTCTATAACAAA
30882240 AAATA
1 AAATA
30882245 GAATGTGAAG
Statistics
Matches: 208, Mismatches: 24, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
229 4 0.02
230 18 0.09
231 28 0.13
232 9 0.04
233 5 0.02
234 33 0.16
235 37 0.18
236 1 0.00
237 58 0.28
238 15 0.07
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.39
Consensus pattern (234 bp):
AAATAATGATTTAAAATTTACGAAAATATGTGTAATAATATTTAGTACAATGAAATTTTTAAACT
CCATAAATAGATTTAAAAAGTTACAGTATCTTATAAAAGCATAGTAAATAATTAAAAATATATAT
TTAAAAAAATATCAATTTTTTAAAAGGGCTTTGTAGCCAAATACTCTACCTATTATTATAATAAT
ATTACTTTAATAATGTAATATTTAGATTTCTATAACAAA
Found at i:30883765 original size:2 final size:2
Alignment explanation
Indices: 30883758--30883789 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
30883748 AATAAGGCCT
30883758 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA
30883790 ATGTTGGGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:30885770 original size:13 final size:13
Alignment explanation
Indices: 30885752--30885808 Score: 57
Period size: 13 Copynumber: 4.6 Consensus size: 13
30885742 AAATAATAAA
30885752 AATAAAATTTTTT
1 AATAAAATTTTTT
30885765 AAT-AAATTTTTT
1 AATAAAATTTTTT
* * *
30885777 TATATATTTTTTT
1 AATAAAATTTTTT
30885790 AAT--AATTTTTT
1 AATAAAATTTTTT
*
30885801 AAAAAAAT
1 AATAAAAT
30885809 ACGGGTTAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
11 9 0.26
12 11 0.31
13 15 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
AATAAAATTTTTT
Found at i:30885773 original size:12 final size:12
Alignment explanation
Indices: 30885756--30885802 Score: 60
Period size: 12 Copynumber: 3.9 Consensus size: 12
30885746 AATAAAAATA
30885756 AAATTTTTTAAT
1 AAATTTTTTAAT
*
30885768 AAATTTTTTTAT
1 AAATTTTTTAAT
*
30885780 ATATTTTTTTAAT
1 A-AATTTTTTAAT
30885793 -AATTTTTTAA
1 AAATTTTTTAA
30885803 AAAAATACGG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
11 9 0.30
12 12 0.40
13 9 0.30
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
AAATTTTTTAAT
Found at i:30885802 original size:11 final size:11
Alignment explanation
Indices: 30885757--30885802 Score: 56
Period size: 11 Copynumber: 3.9 Consensus size: 11
30885747 ATAAAAATAA
30885757 AATTTTTTAAT
1 AATTTTTTAAT
30885768 AAATTTTTTTATAT
1 -AA-TTTTTTA-AT
*
30885782 ATTTTTTTAAT
1 AATTTTTTAAT
30885793 AATTTTTTAA
1 AATTTTTTAA
30885803 AAAAATACGG
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 11 0.37
12 9 0.30
13 8 0.27
14 2 0.07
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
AATTTTTTAAT
Found at i:30887279 original size:23 final size:21
Alignment explanation
Indices: 30887253--30887294 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
30887243 TTTGGGTTAA
30887253 TATTTTGTATGAATTTATTTTTT
1 TATTTTGTAT-AA-TTATTTTTT
*
30887276 TATTTTTTATAATTATTTT
1 TATTTTGTATAATTATTTT
30887295 AAAATTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 2 0.11
23 9 0.50
ACGTcount: A:0.24, C:0.00, G:0.05, T:0.71
Consensus pattern (21 bp):
TATTTTGTATAATTATTTTTT
Found at i:30887543 original size:15 final size:15
Alignment explanation
Indices: 30887502--30887543 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
30887492 GTTAACTCAT
*
30887502 TTAATTTTTATATAA
1 TTAAATTTTATATAA
*
30887517 TGTAACTTTTATATAA
1 T-TAAATTTTATATAA
30887533 TTAAATTTTAT
1 TTAAATTTTAT
30887544 TTGATTTTGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (15 bp):
TTAAATTTTATATAA
Found at i:30896321 original size:27 final size:27
Alignment explanation
Indices: 30896261--30896326 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
30896251 AAAATCAGAG
*
30896261 CATTGGCGCCTCTCAGTATGGCACCAA
1 CATTGGCGCCTCCCAGTATGGCACCAA
* * *
30896288 TAATGGCGCCTCCCAG-ATAGGCACCAC
1 CATTGGCGCCTCCCAGTAT-GGCACCAA
30896315 CATTGGCGCCTC
1 CATTGGCGCCTC
30896327 TAATACTATG
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
26 2 0.06
27 30 0.94
ACGTcount: A:0.21, C:0.36, G:0.23, T:0.20
Consensus pattern (27 bp):
CATTGGCGCCTCCCAGTATGGCACCAA
Found at i:30900802 original size:20 final size:18
Alignment explanation
Indices: 30900755--30900803 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
30900745 GTATATAAAC
30900755 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
30900772 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
30900792 ATTAAATTAATA
1 ATTAAATTAATA
30900804 AAATACAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:30907781 original size:18 final size:18
Alignment explanation
Indices: 30907760--30907794 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
30907750 TTTATCATTA
30907760 TTATTA-TTATTATTAGTG
1 TTATTATTTA-TATTAGTG
30907778 TTATTATTTATATTAGT
1 TTATTATTTATATTAGT
30907795 TCATATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 13 0.81
19 3 0.19
ACGTcount: A:0.29, C:0.00, G:0.09, T:0.63
Consensus pattern (18 bp):
TTATTATTTATATTAGTG
Found at i:30907827 original size:16 final size:16
Alignment explanation
Indices: 30907802--30907848 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 16
30907792 AGTTCATATA
30907802 TTTATCTATATAATT-T
1 TTTAT-TATATAATTAT
*
30907818 TTTATGTATATGCATTAT
1 TTTAT-TATAT-AATTAT
30907836 TTTATTATATAAT
1 TTTATTATATAAT
30907849 ATTATTTTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 12 0.46
17 8 0.31
18 6 0.23
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (16 bp):
TTTATTATATAATTAT
Found at i:30908052 original size:16 final size:16
Alignment explanation
Indices: 30908028--30908069 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
30908018 TTCAACTTTA
30908028 ATATATTATTATGTAT
1 ATATATTATTATGTAT
* *
30908044 ATATGTTATTATTTAT
1 ATATATTATTATGTAT
30908060 AT-TATTATTA
1 ATATATTATTA
30908070 AATCTTTCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
15 7 0.30
16 16 0.70
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (16 bp):
ATATATTATTATGTAT
Found at i:30908064 original size:12 final size:13
Alignment explanation
Indices: 30908028--30908069 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
30908018 TTCAACTTTA
30908028 ATATATTATTATGT
1 ATATATTATTAT-T
30908042 ATATATGTTATTATT
1 ATATA--TTATTATT
30908057 -TATATTATTATT
1 ATATATTATTATT
30908069 A
1 A
30908070 AATCTTTCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 8 0.32
14 9 0.36
15 1 0.04
16 7 0.28
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.60
Consensus pattern (13 bp):
ATATATTATTATT
Found at i:30908157 original size:21 final size:21
Alignment explanation
Indices: 30908114--30908166 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
30908104 TAATATATGT
**
30908114 ATATAAT-TTTATGTATTTTG
1 ATATAATATTTATGTATTGGG
*
30908134 ATATAATATTTATTTATTGGG
1 ATATAATATTTATGTATTGGG
*
30908155 ATACTATTATTT
1 ATA-TAATATTT
30908167 TATGAAGTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 7 0.26
21 13 0.48
22 7 0.26
ACGTcount: A:0.32, C:0.02, G:0.09, T:0.57
Consensus pattern (21 bp):
ATATAATATTTATGTATTGGG
Found at i:30915446 original size:21 final size:21
Alignment explanation
Indices: 30915396--30915451 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 21
30915386 AATAACTAAC
30915396 TAATCTTAATTAA-C-TAAAT
1 TAATCTTAATTAATCATAAAT
30915415 TAA-CTTTAATTAATCATATAA-
1 TAATC-TTAATTAATCATA-AAT
30915436 TAATCTTAATTAATCA
1 TAATCTTAATTAATCA
30915452 AAGATAGTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
18 1 0.03
19 11 0.34
20 1 0.03
21 16 0.50
22 3 0.09
ACGTcount: A:0.46, C:0.11, G:0.00, T:0.43
Consensus pattern (21 bp):
TAATCTTAATTAATCATAAAT
Found at i:30943300 original size:50 final size:50
Alignment explanation
Indices: 30943225--30943517 Score: 469
Period size: 50 Copynumber: 5.8 Consensus size: 50
30943215 ATTTGGGTAA
*
30943225 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACG
*
30943275 AGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACG
30943325 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACG
*
30943375 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACG
* * * * * *
30943425 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCGACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACG
** *
30943475 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
30943518 TGTTATTATC
Statistics
Matches: 229, Mismatches: 13, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
50 195 0.85
51 34 0.15
ACGTcount: A:0.26, C:0.24, G:0.31, T:0.19
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGACG
Found at i:30946575 original size:10 final size:10
Alignment explanation
Indices: 30946560--30946584 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
30946550 GTTTCAATCC
30946560 AATTTTCTTT
1 AATTTTCTTT
30946570 AATTTTCTTT
1 AATTTTCTTT
30946580 AATTT
1 AATTT
30946585 ATACCATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.24, C:0.08, G:0.00, T:0.68
Consensus pattern (10 bp):
AATTTTCTTT
Found at i:30953027 original size:15 final size:15
Alignment explanation
Indices: 30953018--30953052 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
30953008 AAAAATCAAA
30953018 AAAATCAAAAAAATC
1 AAAATCAAAAAAATC
* *
30953033 AAAATCGAAAAAATG
1 AAAATCAAAAAAATC
30953048 AAAAT
1 AAAAT
30953053 GATGAAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.71, C:0.09, G:0.06, T:0.14
Consensus pattern (15 bp):
AAAATCAAAAAAATC
Found at i:30953046 original size:9 final size:9
Alignment explanation
Indices: 30953007--30953036 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
30952997 ACCAAAGAAT
30953007 AAAAAATCA
1 AAAAAATCA
30953016 AAAAAATCA
1 AAAAAATCA
30953025 AAAAAATCA
1 AAAAAATCA
30953034 AAA
1 AAA
30953037 TCGAAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.80, C:0.10, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAATCA
Found at i:30956523 original size:71 final size:71
Alignment explanation
Indices: 30956437--30956611 Score: 226
Period size: 71 Copynumber: 2.5 Consensus size: 71
30956427 ATCTAGTACG
* * *
30956437 TGTCGCGACACAGGTACCCCTTTATT-TCTACACGCAACTTTGAAGTATTAAAATTTGAAAATAA
1 TGTCGCGACATAGGTACCCCTGTATTGT-GACACGCAACTTTGAAGTATTAAAATTTGAAAATAA
30956501 CAGGCCA
65 CAGGCCA
* * *
30956508 TGTCGTGACATAGGTACCCCTGTGTTGTGACACGCAACTTTGAAGTATTAAAATTTGAAAATACC
1 TGTCGCGACATAGGTACCCCTGTATTGTGACACGCAACTTTGAAGTATTAAAATTTGAAAATAAC
*
30956573 AGGCCG
66 AGGCCA
* * * * *
30956579 TGTTGCGACATAGGTTCCCTTGTGTTGCGACAC
1 TGTCGCGACATAGGTACCCCTGTATTGTGACAC
30956612 ATTACTTCGA
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
71 90 0.99
72 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.29
Consensus pattern (71 bp):
TGTCGCGACATAGGTACCCCTGTATTGTGACACGCAACTTTGAAGTATTAAAATTTGAAAATAAC
AGGCCA
Found at i:30964720 original size:16 final size:17
Alignment explanation
Indices: 30964701--30964745 Score: 53
Period size: 16 Copynumber: 2.8 Consensus size: 17
30964691 TTTTAATTAG
30964701 TTTAATTTAATTAATT-
1 TTTAATTTAATTAATTC
30964717 TTTAATCTTAA-TAATTC
1 TTTAAT-TTAATTAATTC
30964734 TTT-A-TTAATTAA
1 TTTAATTTAATTAA
30964746 ACTAATGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
14 4 0.15
15 3 0.12
16 12 0.46
17 7 0.27
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTAATTTAATTAATTC
Found at i:30967067 original size:22 final size:24
Alignment explanation
Indices: 30967024--30967067 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
30967014 TGATAATATG
30967024 TTTTGATATAACAAATTAAAGTAT
1 TTTTGATATAACAAATTAAAGTAT
*
30967048 TTTTGA-ATAA-AATTTAAAGT
1 TTTTGATATAACAAATTAAAGT
30967068 TGAACAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 4 0.21
24 6 0.32
ACGTcount: A:0.45, C:0.02, G:0.09, T:0.43
Consensus pattern (24 bp):
TTTTGATATAACAAATTAAAGTAT
Found at i:30967193 original size:20 final size:20
Alignment explanation
Indices: 30967168--30967209 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
30967158 CAAACTTTAA
30967168 AATCAAGTTAAAA-TTATTTT
1 AATCAAG-TAAAAGTTATTTT
*
30967188 AATCAAGTAAAAGTTCTTTT
1 AATCAAGTAAAAGTTATTTT
30967208 AA
1 AA
30967210 CTAGTCAAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (20 bp):
AATCAAGTAAAAGTTATTTT
Found at i:30967460 original size:13 final size:13
Alignment explanation
Indices: 30967439--30967502 Score: 83
Period size: 13 Copynumber: 4.9 Consensus size: 13
30967429 AGTTCTTTAT
*
30967439 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
30967452 TGTTTTTGAAAAG
1 TGCTTTTGAAAAG
* *
30967465 TGCTGTGGAAAAG
1 TGCTTTTGAAAAG
*
30967478 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
30967491 TGCTTTTGAAAA
1 TGCTTTTGAAAA
30967503 TTTTGAGCGT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.28, C:0.06, G:0.28, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:30982699 original size:11 final size:12
Alignment explanation
Indices: 30982678--30982706 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
30982668 TAAATTATTT
30982678 TAAAAACATAAA
1 TAAAAACATAAA
30982690 TAAAAA-ATAAA
1 TAAAAACATAAA
30982701 TAAAAA
1 TAAAAA
30982707 TTATAATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 11 0.65
12 6 0.35
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.17
Consensus pattern (12 bp):
TAAAAACATAAA
Found at i:30984561 original size:44 final size:44
Alignment explanation
Indices: 30984513--30984767 Score: 173
Period size: 44 Copynumber: 5.9 Consensus size: 44
30984503 GATCTGTGGA
* * *
30984513 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACTAGC
* * * * *
30984557 TTTAATCTGCTCCACTACAACTTCAGGGAAATAAGATTCGCCACC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT-ACTAGC
* * ** * *
30984602 TTCAGTCTGC-CTCACTTTAACTTCA-GGAGGATAAGACTTGCTAAC
1 TTTAATCTGCTC-CACTGCAACTTCAGGGA-GATAAGA-TTACTAGC
* * * *
30984647 -TTAGTCTGCTCCACTGCAGCTTCATGGAGATAA-A--ACTAGA
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACTAGC
*** * * * * * *
30984687 TGCGATCTGCT-CTCTGCAACTTTAGGAAGATAGGATTATTGGC
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACTAGC
*
30984730 TTTAATCTGCTCCACTGCAACTCCAGGGAGATAAGATT
1 TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
30984768 CGCCATCTTC
Statistics
Matches: 157, Mismatches: 43, Indels: 22
0.71 0.19 0.10
Matches are distributed among these distances:
40 19 0.12
41 7 0.04
43 12 0.08
44 83 0.53
45 34 0.22
46 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
TTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTACTAGC
Found at i:30984906 original size:100 final size:99
Alignment explanation
Indices: 30984790--30985086 Score: 407
Period size: 100 Copynumber: 3.0 Consensus size: 99
30984780 TATTTTTAAT
* *
30984790 TGCAATGTTGGTGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCGCTACACCGCCAAGGAA
1 TGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAA
*
30984855 GTAAGATTCACTGATGCGGCTTCAATCTTTTTCAC
66 GTAAGATTC-CTGTTGCGGCTTCAATCTTTTTCAC
* * * ** *
30984890 TGCAATGTTGGGGAAACAAGACTCACCGTCGTAGCTTCAATCTGTTCCACTATATAGCCAATGAA
1 TGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAA
* * *
30984955 GTAAGATTCGCTGTTGCGACTTCAATCTTTTTAAT
66 GTAAGATTC-CTGTTGCGGCTTCAATCTTTTTCAC
* * * *
30984990 TGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTTCACCACACCGCCAGGGGA
1 TGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAA
*
30985055 GTAAGATTCGTCGTTGCGGCTTCAAT-TTTTTC
66 GTAAGATTCCT-GTTGCGGCTTCAATCTTTTTC
30985087 CATTTAATTC
Statistics
Matches: 170, Mismatches: 26, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
99 6 0.04
100 164 0.96
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (99 bp):
TGCAATGTTGGGGAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAAGGAA
GTAAGATTCCTGTTGCGGCTTCAATCTTTTTCAC
Found at i:30985386 original size:88 final size:88
Alignment explanation
Indices: 30985286--30985447 Score: 279
Period size: 88 Copynumber: 1.8 Consensus size: 88
30985276 ACGAGTGTCA
* * * *
30985286 TCGATCTGCTTCACTGCCAGCACAGGAAGATAAGATCTGTTATTTTCAACCTACTCCACTGCTGC
1 TCGATCTACTTCACTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGC
30985351 TCAGGGAGACAAAGCTGGTATCT
66 TCAGGGAGACAAAGCTGGTATCT
*
30985374 TCGATCTACTTCACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGC
1 TCGATCTACTTCACTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGC
30985439 TCAGGGAGA
66 TCAGGGAGA
30985448 TAAGTTGAAG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
88 69 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (88 bp):
TCGATCTACTTCACTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTGCTGC
TCAGGGAGACAAAGCTGGTATCT
Found at i:30985434 original size:45 final size:45
Alignment explanation
Indices: 30985297--30985435 Score: 138
Period size: 45 Copynumber: 3.1 Consensus size: 45
30985287 CGATCTGCTT
** * *
30985297 CACTGCCAGCACAGGAAGATAAGATCTGTTATTTTCAACCTACTC
1 CACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
*** * * * * * * *
30985342 CACTGCTGCT-CAGGGAGACAA-AGCTGGTATCTTCGATCTACTT
1 CACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
30985385 CACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
1 CACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
30985430 CACTGC
1 CACTGC
30985436 TGCTCAGGGA
Statistics
Matches: 70, Mismatches: 22, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
43 23 0.33
44 19 0.27
45 28 0.40
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (45 bp):
CACTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACCTACTC
Found at i:30997616 original size:27 final size:28
Alignment explanation
Indices: 30997585--30997655 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 28
30997575 AAACATAGAT
* *
30997585 ATATATGTATATATATAA-ATATAAAAA
1 ATATATATACATATATAATATATAAAAA
* *
30997612 ATATATTTACATGTA-AATATATAAAAA
1 ATATATATACATATATAATATATAAAAA
30997639 ATATATATACATATATA
1 ATATATATACATATATA
30997656 TAAAAATTAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.05
27 34 0.92
28 1 0.03
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.38
Consensus pattern (28 bp):
ATATATATACATATATAATATATAAAAA
Found at i:30997628 original size:25 final size:23
Alignment explanation
Indices: 30997592--30997666 Score: 78
Period size: 23 Copynumber: 3.1 Consensus size: 23
30997582 GATATATATG
*
30997592 TATATATATAAATATAAAAAATA
1 TATATACATAAATATAAAAAATA
*
30997615 TATTTACATGTAAATATATAAAAAATA
1 TATATACA--T-AA-ATATAAAAAATA
* *
30997642 TATATACATATATATAAAAATTA
1 TATATACATAAATATAAAAAATA
30997665 TA
1 TA
30997667 AAAAAATAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
23 19 0.44
24 1 0.02
25 2 0.05
26 2 0.05
27 19 0.44
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.37
Consensus pattern (23 bp):
TATATACATAAATATAAAAAATA
Found at i:30997670 original size:31 final size:33
Alignment explanation
Indices: 30997626--30997694 Score: 99
Period size: 31 Copynumber: 2.2 Consensus size: 33
30997616 ATTTACATGT
*
30997626 AAATATATAAAAAATAT-ATATACATATATATAA
1 AAATATATAAAAAAAATAAT-TACATATATATAA
30997659 AAAT-TAT-AAAAAAATAATTACATATATATAA
1 AAATATATAAAAAAAATAATTACATATATATAA
30997690 AAATA
1 AAATA
30997695 ATAGTCATTA
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
31 24 0.73
32 5 0.15
33 4 0.12
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (33 bp):
AAATATATAAAAAAAATAATTACATATATATAA
Found at i:30997683 original size:27 final size:27
Alignment explanation
Indices: 30997595--30997684 Score: 83
Period size: 27 Copynumber: 3.2 Consensus size: 27
30997585 ATATATGTAT
* *
30997595 ATATATAAATATAAAAAATATATTTAC
1 ATATAAAAATATAAAAAATATAATTAC
* * *
30997622 ATGTAAATATATAAAAAATATATATACATAT
1 ATATAAAAATATAAAAAATATA-AT---TAC
30997653 ATATAAAAATTATAAAAAA-ATAATTAC
1 ATATAAAAA-TATAAAAAATATAATTAC
30997680 ATATA
1 ATATA
30997685 TATAAAAATA
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
27 26 0.52
28 1 0.02
30 2 0.04
31 12 0.24
32 9 0.18
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.34
Consensus pattern (27 bp):
ATATAAAAATATAAAAAATATAATTAC
Done.