Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 106 of 182
Found at i:32038768 original size:7 final size:7
Alignment explanation
Indices: 32038756--32038787 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
32038746 ATTATTTATT
32038756 TTTTGAA
1 TTTTGAA
32038763 TTTTGAA
1 TTTTGAA
32038770 TTTTGAA
1 TTTTGAA
32038777 TTTTGAA
1 TTTTGAA
32038784 TTTT
1 TTTT
32038788 TAAGAATCAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.25, C:0.00, G:0.12, T:0.62
Consensus pattern (7 bp):
TTTTGAA
Found at i:32039300 original size:21 final size:21
Alignment explanation
Indices: 32039275--32039316 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
32039265 GCATATGCAT
32039275 TTTAA-CATCGAGGTATCGATA
1 TTTAAGCATCGA-GTATCGATA
*
32039296 TTTAAGCCTCGAGTATCGATA
1 TTTAAGCATCGAGTATCGATA
32039317 CCTCTGCTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (21 bp):
TTTAAGCATCGAGTATCGATA
Found at i:32040754 original size:15 final size:15
Alignment explanation
Indices: 32040734--32040811 Score: 61
Period size: 15 Copynumber: 5.2 Consensus size: 15
32040724 TTTATGGAAA
32040734 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
32040749 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
32040763 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
32040779 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
*
32040793 AGTCAAAGATATGAGT
1 A-TCAAAGATATGGGT
32040809 ATC
1 ATC
32040812 GAGATATTGG
Statistics
Matches: 46, Mismatches: 13, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
14 8 0.17
15 31 0.67
16 7 0.15
ACGTcount: A:0.44, C:0.08, G:0.22, T:0.27
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:32040762 original size:30 final size:30
Alignment explanation
Indices: 32040728--32040821 Score: 152
Period size: 30 Copynumber: 3.1 Consensus size: 30
32040718 TCCATATTTA
*
32040728 TGGAAAATCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
32040758 TGGAAAGTCAAAGATATGGGTATCAAATAT
1 TGGAAAGTCAAAGATATGGGTATCAAATAT
* *
32040788 TGGAAAGTCAAAGATATGAGTATCGAGATAT
1 TGGAAAGTCAAAGATATGGGTATC-AAATAT
32040819 TGG
1 TGG
32040822 CATAATTAAA
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
30 52 0.87
31 8 0.13
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (30 bp):
TGGAAAGTCAAAGATATGGGTATCAAATAT
Found at i:32047454 original size:19 final size:20
Alignment explanation
Indices: 32047416--32047454 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
32047406 CCACAGATGT
*
32047416 CACGACATCGAAATTGAATGC
1 CACGACATCG-AACTGAATGC
32047437 CACGACATCG-ACTGAATG
1 CACGACATCGAACTGAATG
32047455 TTGCCACATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 7 0.41
21 10 0.59
ACGTcount: A:0.36, C:0.26, G:0.21, T:0.18
Consensus pattern (20 bp):
CACGACATCGAACTGAATGC
Found at i:32049002 original size:24 final size:25
Alignment explanation
Indices: 32048975--32049028 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 25
32048965 CGGATGTATT
*
32048975 ATCATAAT-CAGGTATAGATGCAGA
1 ATCATAATACAGATATAGATGCAGA
* * *
32048999 ATCA-AATACATATTTAGATGCATA
1 ATCATAATACAGATATAGATGCAGA
32049023 ATCATA
1 ATCATA
32049029 TCCTACCTCT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
23 3 0.12
24 20 0.83
25 1 0.04
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (25 bp):
ATCATAATACAGATATAGATGCAGA
Found at i:32063962 original size:25 final size:25
Alignment explanation
Indices: 32063931--32063992 Score: 115
Period size: 25 Copynumber: 2.5 Consensus size: 25
32063921 TTAGAAAAAA
32063931 GTTGCTTGTCCTCTGCTTGTTGGTT
1 GTTGCTTGTCCTCTGCTTGTTGGTT
32063956 GTTGCTTGTCCTCTGCTTGTTGGTT
1 GTTGCTTGTCCTCTGCTTGTTGGTT
*
32063981 GTTTCTTGTCCT
1 GTTGCTTGTCCT
32063993 ATTTAGCTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.00, C:0.21, G:0.26, T:0.53
Consensus pattern (25 bp):
GTTGCTTGTCCTCTGCTTGTTGGTT
Found at i:32065041 original size:16 final size:16
Alignment explanation
Indices: 32065022--32065075 Score: 60
Period size: 15 Copynumber: 3.5 Consensus size: 16
32065012 ACCAAAATTG
32065022 TTAATTAAGCTTAAGT
1 TTAATTAAGCTTAAGT
* *
32065038 TTAACTAAGCTT-AGA
1 TTAATTAAGCTTAAGT
32065053 TTAATTAAG-TTAA-T
1 TTAATTAAGCTTAAGT
32065067 TATAATTAA
1 T-TAATTAA
32065076 TTAATAACTA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
14 3 0.09
15 18 0.56
16 11 0.34
ACGTcount: A:0.43, C:0.06, G:0.09, T:0.43
Consensus pattern (16 bp):
TTAATTAAGCTTAAGT
Found at i:32066102 original size:43 final size:43
Alignment explanation
Indices: 32066038--32066267 Score: 205
Period size: 43 Copynumber: 5.4 Consensus size: 43
32066028 TACTTTAGTT
*
32066038 TATCCAATGATGCAC-AGTGTGTGCCAGTATAATTGTTTCGGTA
1 TATCCAATGATGCACTA-TGTGTGCCAGTATAATTGTTTCAGTA
* * **
32066081 TATCCATTGATGCACTATGTGTGCTAGTATAATTACTTCAGTA
1 TATCCAATGATGCACTATGTGTGCCAGTATAATTGTTTCAGTA
* * * * * *
32066124 TATCCAATGATGCACTGTGTATGCTAGTGTAATTGTTTCAATT
1 TATCCAATGATGCACTATGTGTGCCAGTATAATTGTTTCAGTA
* * * *
32066167 TATCCAATGATGCATTATGTGTGCCAGTATAAATGCTTT-GGTT
1 TATCCAATGATGCACTATGTGTGCCAGTATAATTG-TTTCAGTA
* ** * * * * *
32066210 TGTCTGATGATGCACCATGTGTGCCAATAT-ATTTTTTCAATT
1 TATCCAATGATGCACTATGTGTGCCAGTATAATTGTTTCAGTA
*
32066252 TATCCGATGATGCACT
1 TATCCAATGATGCACT
32066268 GAGGTACCAG
Statistics
Matches: 150, Mismatches: 34, Indels: 7
0.79 0.18 0.04
Matches are distributed among these distances:
41 3 0.02
42 17 0.11
43 126 0.84
44 4 0.03
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (43 bp):
TATCCAATGATGCACTATGTGTGCCAGTATAATTGTTTCAGTA
Found at i:32066220 original size:86 final size:86
Alignment explanation
Indices: 32066027--32066267 Score: 252
Period size: 86 Copynumber: 2.8 Consensus size: 86
32066017 TGTACAGGTT
* * ** * *
32066027 ATACTTTAGTTTATCCAATGATGCACAGTGTGTGCCAGTATAATTGTTTCGGTATATCCATTGAT
1 ATACTTCAGTATATCCAATGATGCACAGTGTGTGCCAGTATAATTGTTTCAATTTATCCAATGAT
*
32066092 GCACTATGTGTGCTAGTATAA
66 GCACTATGTGTGCCAGTATAA
* * * * *
32066113 TTACTTCAGTATATCCAATGATGCACTGTGTATGCTAGTGTAATTGTTTCAATTTATCCAATGAT
1 ATACTTCAGTATATCCAATGATGCACAGTGTGTGCCAGTATAATTGTTTCAATTTATCCAATGAT
*
32066178 GCATTATGTGTGCCAGTATAA
66 GCACTATGTGTGCCAGTATAA
* ** * * ** * * *
32066199 ATGCTTTGGTTTGTCTGATGATGCACCA-TGTGTGCCAATAT-ATTTTTTCAATTTATCCGATGA
1 ATACTTCAGTATATCCAATGATGCA-CAGTGTGTGCCAGTATAATTGTTTCAATTTATCCAATGA
32066262 TGCACT
65 TGCACT
32066268 GAGGTACCAG
Statistics
Matches: 125, Mismatches: 29, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
85 25 0.20
86 99 0.79
87 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (86 bp):
ATACTTCAGTATATCCAATGATGCACAGTGTGTGCCAGTATAATTGTTTCAATTTATCCAATGAT
GCACTATGTGTGCCAGTATAA
Found at i:32068766 original size:69 final size:69
Alignment explanation
Indices: 32068657--32068786 Score: 170
Period size: 69 Copynumber: 1.9 Consensus size: 69
32068647 TATACACTGT
* * * * * *
32068657 CATGGTCCAACCATGGTTTTACGTCTAAACAAATGTCATAGTCTCGCTATGGTCTTATGTATATA
1 CATGGTCCAACCATGATCTTACATCCAAACAAATGCCATAGCCTCGCTATGGTCTTATGTATATA
32068722 TTGC
66 TTGC
* * * *
32068726 CATGGTCCAACCATGATCTTATATCCGAACAATTGCCATAGCCTTGCTATGGTCTTATGTA
1 CATGGTCCAACCATGATCTTACATCCAAACAAATGCCATAGCCTCGCTATGGTCTTATGTA
32068787 CGAATGCAAT
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
69 51 1.00
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (69 bp):
CATGGTCCAACCATGATCTTACATCCAAACAAATGCCATAGCCTCGCTATGGTCTTATGTATATA
TTGC
Found at i:32069651 original size:155 final size:155
Alignment explanation
Indices: 32069437--32069747 Score: 579
Period size: 156 Copynumber: 2.0 Consensus size: 155
32069427 CATTTAACAG
32069437 TTTTACAAATTGACCCCAGATTAGCTAGATTAAGCTAATACGAGCTCAAAAATATAAAAATTAC-
1 TTTTACAAATTGACCCCAGATTAGCTAGATTAAGCTAATACGAGCTCAAAAATATAAAAATTACT
32069501 AAAAACGAGACAAAAATACCTCACCATGCATGAATAATTAAGGTTGGCTGAATGTCTTCCACCCT
66 AAAAACGAGACAAAAATACCTCACCATGCATGAATAATTAAGGTTGGCTGAATGTCTTCCACCCT
32069566 TAAATAGAGGTTTTAGTGGCTAGCT
131 TAAATAGAGGTTTTAGTGGCTAGCT
32069591 TTTTACAAATTGACCCCCAGATTAGCTAGATTAAGCTAATACGAGCTCAAAAATATAAAAATTAC
1 TTTTACAAATTGA-CCCCAGATTAGCTAGATTAAGCTAATACGAGCTCAAAAATATAAAAATTAC
* *
32069656 TAAAAATGAGACAAAAATACCTCACCATGCATGAATAATTAAGGTTGGTTGAATGTCTTCCACCC
65 TAAAAACGAGACAAAAATACCTCACCATGCATGAATAATTAAGGTTGGCTGAATGTCTTCCACCC
*
32069721 TTAAATAGTGGTTTTAGTGGCTAGCT
130 TTAAATAGAGGTTTTAGTGGCTAGCT
32069747 T
1 T
32069748 CAAAAAATGG
Statistics
Matches: 152, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
154 13 0.09
155 51 0.34
156 88 0.58
ACGTcount: A:0.38, C:0.18, G:0.15, T:0.29
Consensus pattern (155 bp):
TTTTACAAATTGACCCCAGATTAGCTAGATTAAGCTAATACGAGCTCAAAAATATAAAAATTACT
AAAAACGAGACAAAAATACCTCACCATGCATGAATAATTAAGGTTGGCTGAATGTCTTCCACCCT
TAAATAGAGGTTTTAGTGGCTAGCT
Found at i:32071660 original size:28 final size:28
Alignment explanation
Indices: 32071597--32071663 Score: 73
Period size: 29 Copynumber: 2.4 Consensus size: 28
32071587 CCCAGAAAAA
32071597 GCCATTTTTTCAAAATTTACCGAAATGG
1 GCCATTTTTTCAAAATTTACCGAAATGG
* * *
32071625 GCAGATTTTTT-AATTATTTACCGGAATGG
1 GC-CATTTTTTCAA-AATTTACCGAAATGG
*
32071654 TCCATTTTTT
1 GCCATTTTTT
32071664 GGGAAATCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (28 bp):
GCCATTTTTTCAAAATTTACCGAAATGG
Found at i:32072272 original size:126 final size:126
Alignment explanation
Indices: 32071939--32072292 Score: 561
Period size: 125 Copynumber: 2.8 Consensus size: 126
32071929 ATTATTTCGA
32071939 GTTGACGTTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
1 GTTGACGTTTCTGAG-CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTG
* * *
32072003 TGAAATCGCGCCCTCGTGGACGTGATTTTGCTACAGTAGGTTATGTAAGAAATAATTTTTTT
65 TGAAATCGCGCCCTCGTGGATGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
* ** * * *
32072065 -CTGATTTTTCTGAGCAAATAGTATAAAATCGTTTCTACGAGAATGCTATTTGAGAAGAAATTGT
1 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
*
32072129 GAAATCGCGCCCTCGTGGATGCGATTTTGCTATAGTAGGTCATGTAAGAAATAATTTTTTT
66 GAAATCGCGCCCTCGTGGATGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
*
32072190 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAGTTGT
1 GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
*
32072255 GAAATCGCGCCTTCGTGGACT-CGATTTTGCTACAGTAG
66 GAAATCGCGCCCTCGTGGA-TGCGATTTTGCTACAGTAG
32072293 CAAGTTTGGG
Statistics
Matches: 206, Mismatches: 19, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
125 113 0.55
126 92 0.45
127 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (126 bp):
GTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAAATTGT
GAAATCGCGCCCTCGTGGATGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTT
Found at i:32074433 original size:7 final size:7
Alignment explanation
Indices: 32074423--32074447 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32074413 TTATATACAT
32074423 AATACTA
1 AATACTA
32074430 AATACTA
1 AATACTA
32074437 AATACTA
1 AATACTA
32074444 AATA
1 AATA
32074448 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:32075890 original size:587 final size:586
Alignment explanation
Indices: 32074779--32075946 Score: 2192
Period size: 587 Copynumber: 2.0 Consensus size: 586
32074769 CCTCGGTCGC
*
32074779 GTCGCCCCGCACATCTCCCGATATAATGTTGCCAAGACGGCAGACCCCCAACTAAATTCACCGGC
1 GTCGCCCCGCACATCTCCCGATATAATGTTGCCAAAACGGCAGACCCCCAACTAAATTCACCGGC
32074844 TCCTCTAAAATCAACGAGTTTTAGCAGCCACCTTAGATGTACACGGCTCCGTAACGTGTCCGGCA
66 TCCTCTAAAATCAACGAGTTTTAGCAGCCACCTTAGATGTACACGGCTCCGTAACGTGTCCGGCA
* * *
32074909 TCAGATAACCTCTAATTATTTGAAGAATGTATGATTGAACATATCGGATTCTTTGGATTTCGGTT
131 TCAGATAACCTCCAATTATTTGAAGAATGTATGATCGAACATATCGAATTCTTTGGATTTCGGTT
* *
32074974 GAATTTGCATTCGGATCGGGGAAGGTGGCACGTAACCAGCCCATCTCGACCTTACCTCCATCCAT
196 AAATTTGCATTCGAATCGGGGAAGGTGGCACGTAACCAGCCCATCTCGACCTTACCTCCATCCAT
32075039 TTTTTCCGGAATAGCGCCCAAAAGCTCGTAGCACACTGCCTCTCCATTGCTAGATTGGGCAAACC
261 TTTTTCCGGAATAGCGCCCAAAAGCTCGTAGCACACTGCCTCTCCATTGCTAGATTGGGCAAACC
32075104 CGGTGACTGGGTGCCCGTCCACCGGCAATCCCAACTGCATGCTGACATCTTCTAGAGTGATAGTG
326 CGGTGACTGGGTGCCCGTCCACCGGCAATCCCAACTGCATGCTGACATCTTCTAGAGTGATAGTG
*
32075169 CACTCTCCACATGGAAGATGAAATGTGTGCGTCTCGGGTCTCCACCTCTCGATCAACGCACTAAT
391 CACTCTCCACATGGAAAATGAAATGTGTGCGTCTCGGGTCTCCACCTCTCGATCAACGCACTAAT
32075234 CAGTTTCGGGTCCAACTTGCATCCTCGGCTTACCGTCGCCACGTGCCAAAAATCCGCTTCCCGCA
456 CAGTTTCGGGTCCAACTTGCATCCTCGGCTTACCGTCGCCACGTGCCAAAAATCCGCTTCCCGCA
32075299 GGTAACTCTCTACTAACGGTGATGGAGGAGCATGCATATTCCGGATATGGCATTCCAATACATCG
521 GGTAACTCTCTACTAACGGTGATGGAGGAGCATGCATATTCCGGATATGGCATTCCAATACATCG
32075364 T
586 T
*
32075365 GTCGCCCCGCACATCTCCCGATATAATGTTGCCAAAACGGCAGACCCCCAACTAAATTCACTGGC
1 GTCGCCCCGCACATCTCCCGATATAATGTTGCCAAAACGGCAGACCCCCAACTAAATTCACCGGC
* * *
32075430 TCTTCTAAAATCAACGAGTTTTAGTAGCCACCTTAGATGTACACGGCTCCGTGACGTGTCCGGCA
66 TCCTCTAAAATCAACGAGTTTTAGCAGCCACCTTAGATGTACACGGCTCCGTAACGTGTCCGGCA
*
32075495 TCAGATAACCTCCAATTATTTGAAGAATGTATGATCGAGCATATCGAATTCTTTGGATTTCGGTT
131 TCAGATAACCTCCAATTATTTGAAGAATGTATGATCGAACATATCGAATTCTTTGGATTTCGGTT
32075560 AAATTTGCATTCGAATCGGGGGAAGGTGGCACGTAACCAGCCCATCTCGACCTTACCTCCATCCA
196 AAATTTGCATTCGAATC-GGGGAAGGTGGCACGTAACCAGCCCATCTCGACCTTACCTCCATCCA
32075625 TTTTTTCCGGAATAGCGCCCAAAAGCTCGTAGCACACTGCCTCTCCATTGCTAGATTGGGCAAAC
260 TTTTTTCCGGAATAGCGCCCAAAAGCTCGTAGCACACTGCCTCTCCATTGCTAGATTGGGCAAAC
32075690 CCGGTGACTGGGTGCCCGTCCACCGGCAATCCCAACTGCATGCTGACATCTTCTAGAGTGATAGT
325 CCGGTGACTGGGTGCCCGTCCACCGGCAATCCCAACTGCATGCTGACATCTTCTAGAGTGATAGT
* * *
32075755 GCACTTTCCGCATGGAAAATGAAATGTGTGTGTCTCGGGTCTCCACCTCTCGATCAACGCACTAA
390 GCACTCTCCACATGGAAAATGAAATGTGTGCGTCTCGGGTCTCCACCTCTCGATCAACGCACTAA
32075820 TCAGTTTCGGGTCCAACTTGCATCCTCGGCTTACCGTCGCCACGTGCCAAAAATCCGCTTCCCGC
455 TCAGTTTCGGGTCCAACTTGCATCCTCGGCTTACCGTCGCCACGTGCCAAAAATCCGCTTCCCGC
32075885 AGGTAACTCTCTACTAACGGTGATGGAGGAGCATGCATATTCCGGATATGGCATTCCAATAC
520 AGGTAACTCTCTACTAACGGTGATGGAGGAGCATGCATATTCCGGATATGGCATTCCAATAC
32075947 CCGATCTTCA
Statistics
Matches: 566, Mismatches: 15, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
586 201 0.36
587 365 0.64
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (586 bp):
GTCGCCCCGCACATCTCCCGATATAATGTTGCCAAAACGGCAGACCCCCAACTAAATTCACCGGC
TCCTCTAAAATCAACGAGTTTTAGCAGCCACCTTAGATGTACACGGCTCCGTAACGTGTCCGGCA
TCAGATAACCTCCAATTATTTGAAGAATGTATGATCGAACATATCGAATTCTTTGGATTTCGGTT
AAATTTGCATTCGAATCGGGGAAGGTGGCACGTAACCAGCCCATCTCGACCTTACCTCCATCCAT
TTTTTCCGGAATAGCGCCCAAAAGCTCGTAGCACACTGCCTCTCCATTGCTAGATTGGGCAAACC
CGGTGACTGGGTGCCCGTCCACCGGCAATCCCAACTGCATGCTGACATCTTCTAGAGTGATAGTG
CACTCTCCACATGGAAAATGAAATGTGTGCGTCTCGGGTCTCCACCTCTCGATCAACGCACTAAT
CAGTTTCGGGTCCAACTTGCATCCTCGGCTTACCGTCGCCACGTGCCAAAAATCCGCTTCCCGCA
GGTAACTCTCTACTAACGGTGATGGAGGAGCATGCATATTCCGGATATGGCATTCCAATACATCG
T
Found at i:32076017 original size:15 final size:16
Alignment explanation
Indices: 32075992--32076022 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
32075982 ATAATTATCT
32075992 AAAAATACTTAAATAA
1 AAAAATACTTAAATAA
32076008 AAAAAT-CTTAAATAA
1 AAAAATACTTAAATAA
32076023 TGATTACAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (16 bp):
AAAAATACTTAAATAA
Found at i:32076159 original size:30 final size:31
Alignment explanation
Indices: 32076115--32076178 Score: 112
Period size: 30 Copynumber: 2.1 Consensus size: 31
32076105 GCCATTGATG
32076115 AAAATATAAAAAAAATTAAAATTATTTTAAA
1 AAAATATAAAAAAAATTAAAATTATTTTAAA
*
32076146 AAAATAT-AAAAAAATTATAATTATTTTAAA
1 AAAATATAAAAAAAATTAAAATTATTTTAAA
32076176 AAA
1 AAA
32076179 TAGATTTGAG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 25 0.78
31 7 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (31 bp):
AAAATATAAAAAAAATTAAAATTATTTTAAA
Found at i:32076816 original size:20 final size:20
Alignment explanation
Indices: 32076767--32076818 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
32076757 TTGTAATAAC
*
32076767 TTTAAAATTTTTTTGAAAAT
1 TTTAATATTTTTTTGAAAAT
*
32076787 TTTGAT-TTTTTTT-ATAAAT
1 TTTAATATTTTTTTGA-AAAT
32076806 TTTAATATTTTTT
1 TTTAATATTTTTT
32076819 AGAATTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 1 0.04
19 16 0.59
20 10 0.37
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (20 bp):
TTTAATATTTTTTTGAAAAT
Found at i:32078405 original size:31 final size:31
Alignment explanation
Indices: 32078370--32078433 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
32078360 TTTGTACAAG
* * *
32078370 TTAGGTCCTAAACTTGGCAGTTGTTTCCACA
1 TTAGGACCTAAACTTGACAATTGTTTCCACA
** *
32078401 TTAGGACCTGGACTTGACAATTTTTTCCACA
1 TTAGGACCTAAACTTGACAATTGTTTCCACA
32078432 TT
1 TT
32078434 GGGGCTTAAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (31 bp):
TTAGGACCTAAACTTGACAATTGTTTCCACA
Found at i:32078868 original size:21 final size:20
Alignment explanation
Indices: 32078842--32078882 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
32078832 CGTAAAATGA
*
32078842 TTTCTGGAAAAATGTTTTACT
1 TTTCT-GAAAAATGATTTACT
*
32078863 TTTCTGTAAAATGATTTACT
1 TTTCTGAAAAATGATTTACT
32078883 GAAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.29, C:0.10, G:0.12, T:0.49
Consensus pattern (20 bp):
TTTCTGAAAAATGATTTACT
Found at i:32078873 original size:35 final size:35
Alignment explanation
Indices: 32078827--32078894 Score: 102
Period size: 35 Copynumber: 1.9 Consensus size: 35
32078817 CAGTAAAATA
*
32078827 TTTTCCGTAAAATGATTT-CTGGAAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACT-GAAAAATATTTTAC
*
32078862 TTTTCTGTAAAATGATTTACTGAAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGAAAAATATTTT
32078895 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
35 28 0.93
36 2 0.07
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGAAAAATATTTTAC
Found at i:32079902 original size:4 final size:4
Alignment explanation
Indices: 32079887--32079916 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
32079877 AAAACTAACC
*
32079887 ATGT ACGT ATGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
32079917 ATATATACAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.27, C:0.03, G:0.23, T:0.47
Consensus pattern (4 bp):
ATGT
Found at i:32082138 original size:18 final size:18
Alignment explanation
Indices: 32082117--32082167 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
32082107 AGGAATGAAG
32082117 GAAGGGAGAAGAATGGAT
1 GAAGGGAGAAGAATGGAT
*** *
32082135 GAAGGGAGCTTACTGGAT
1 GAAGGGAGAAGAATGGAT
32082153 GAAGGGAGAAGAATG
1 GAAGGGAGAAGAATG
32082168 CCTGAGAGCT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.39, C:0.04, G:0.43, T:0.14
Consensus pattern (18 bp):
GAAGGGAGAAGAATGGAT
Found at i:32084647 original size:15 final size:15
Alignment explanation
Indices: 32084603--32084647 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
32084593 AATTATTGAT
*
32084603 ATTATAATGTGTATA
1 ATTATATTGTGTATA
* *
32084618 ATTACATTATGTATA
1 ATTATATTGTGTATA
*
32084633 ATTATATTGTATATA
1 ATTATATTGTGTATA
32084648 GTACAATCTG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49
Consensus pattern (15 bp):
ATTATATTGTGTATA
Found at i:32085172 original size:24 final size:24
Alignment explanation
Indices: 32085145--32085215 Score: 74
Period size: 23 Copynumber: 3.0 Consensus size: 24
32085135 ATTATGCAAG
32085145 CTGTATTTGAAGAAATGCTACGAA
1 CTGTATTTGAAGAAATGCTACGAA
* * * *
32085169 CTGTA-TTGTAGAATTACTGCGAA
1 CTGTATTTGAAGAAATGCTACGAA
*
32085192 CTATATTT-ACAGAAATGCTACGAA
1 CTGTATTTGA-AGAAATGCTACGAA
32085216 ATGCATTGTA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
23 18 0.50
24 18 0.50
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (24 bp):
CTGTATTTGAAGAAATGCTACGAA
Found at i:32085237 original size:22 final size:22
Alignment explanation
Indices: 32085212--32085253 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
32085202 AGAAATGCTA
*
32085212 CGAAATGCATTGTAGAATATTG
1 CGAAATGCATTGTAAAATATTG
* *
32085234 CGAATTGTATTGTAAAATAT
1 CGAAATGCATTGTAAAATAT
32085254 CGTGGGATTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.38, C:0.07, G:0.19, T:0.36
Consensus pattern (22 bp):
CGAAATGCATTGTAAAATATTG
Found at i:32085367 original size:36 final size:35
Alignment explanation
Indices: 32085319--32085531 Score: 158
Period size: 36 Copynumber: 5.7 Consensus size: 35
32085309 GTTAGAAAGC
*
32085319 TAAAGGTCATGATCGTAAATCAGTGAACCATAAAAA
1 TAAA-GTCATGATCGTAAATCAGTGAACCGTAAAAA
* ** **
32085355 TAACAGTCATGATCATAAATCAACGAATTGTTAGAAAA
1 TAA-AGTCATGATCGTAAATCAGTGAACCG-TA-AAAA
* * * *
32085393 TCAAAGGTCGTGATCG-AAATTTAGCGGACCGTAAAAA
1 T-AAA-GTCATGATCGTAAA-TCAGTGAACCGTAAAAA
* * * *
32085430 TGACAGTCATAATTGTAAATCAGTGAACTGTTAGAAAA
1 T-AAAGTCATGATCGTAAATCAGTGAACCG-TA-AAAA
32085468 TCAAAGGTCATGATCGTAAATCAGTGAACCGTAAAAA
1 T-AAA-GTCATGATCGTAAATCAGTGAACCGTAAAAA
* *
32085505 TGATAGTCGTGATCGTAAATCAGTGAA
1 T-AAAGTCATGATCGTAAATCAGTGAA
32085532 GTATTAGAAA
Statistics
Matches: 137, Mismatches: 30, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
36 57 0.42
37 22 0.16
38 20 0.15
39 38 0.28
ACGTcount: A:0.42, C:0.14, G:0.19, T:0.25
Consensus pattern (35 bp):
TAAAGTCATGATCGTAAATCAGTGAACCGTAAAAA
Found at i:32085388 original size:75 final size:75
Alignment explanation
Indices: 32085292--32085864 Score: 535
Period size: 75 Copynumber: 7.7 Consensus size: 75
32085282 AAGGTTGTAC
* * * * * * *
32085292 TCGTAAATTAGCGAATTGTTAG-AAAGCTAAAGGTCATGATCGTAAATCAGTGAACCATAAAAAT
1 TCGTAAATCAACGAATTGTTAGAAAATC-AAAGGTCGTGATCGTAAATCAGCGGACCGTAAAAAT
* *
32085356 AACAGTCATGA
65 GACAGTCGTGA
* *
32085367 TCATAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGATCG-AAATTTAGCGGACCGTAAAAAT
1 TCGTAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGATCGTAAA-TCAGCGGACCGTAAAAAT
* *
32085431 GACAGTCATAA
65 GACAGTCGTGA
* ** * * * *
32085442 TTGTAAATCAGTGAACTGTTAGAAAATCAAAGGTCATGATCGTAAATCAGTGAACCGTAAAAATG
1 TCGTAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGATCGTAAATCAGCGGACCGTAAAAATG
*
32085507 ATAGTCGTGA
66 ACAGTCGTGA
** * * * * *
32085517 TCGTAAATCAGTGAAGTATTAGAAAATCGAAGGTCGTTATCATAAATCAGCGGACCGTAAAAATG
1 TCGTAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGATCGTAAATCAGCGGACCGTAAAAATG
*
32085582 ACAGTTGTGA
66 ACAGTCGTGA
* * * * *
32085592 TCGTGAATCAACGAATTGTTAGAAAATCAAAGGTTGTAATCATAAATCAGCGGACCGT-AAAATA
1 TCGTAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGATCGTAAATCAGCGGACCGTAAAAATG
32085656 ACAGTCGTGA
66 ACAGTCGTGA
* * * * * * * * *
32085666 TCGTAAATCAACGAACTATTAGGAAGTCTAAGGTTGTGATCATAAATCAACAGACCGTAAAAATG
1 TCGTAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGATCGTAAATCAGCGGACCGTAAAAATG
*
32085731 ACATTCGTGA
66 ACAGTCGTGA
* * * * *** * *
32085741 TCGTAAATTAGCAAACTGTTAGAAAATTGTAGGTCGTGATAGTAAATCAACAGG-CCGTAAAAAT
1 TCGTAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGATCGTAAATCAGC-GGACCGTAAAAAT
*
32085805 GA-TGATCGTGA
65 GACAG-TCGTGA
* * ** * *
32085816 TCGTAAATCAGCGAATAGTTAGAAAGCCGAAGATCGTGATCGTAAATCA
1 TCGTAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGATCGTAAATCA
32085865 ACAAACTCTT
Statistics
Matches: 412, Mismatches: 80, Indels: 12
0.82 0.16 0.02
Matches are distributed among these distances:
74 66 0.16
75 338 0.82
76 8 0.02
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25
Consensus pattern (75 bp):
TCGTAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGATCGTAAATCAGCGGACCGTAAAAATG
ACAGTCGTGA
Found at i:32085487 original size:39 final size:39
Alignment explanation
Indices: 32085292--32085566 Score: 178
Period size: 39 Copynumber: 7.3 Consensus size: 39
32085282 AAGGTTGTAC
* * * *
32085292 TCGTAAATTAGCGAATTGTTAG-AAAGCTAAAGGTCATGA
1 TCGTAAATCAGTGAACTGTTAGAAAATC-AAAGGTCATGA
**
32085331 TCGTAAATCAGTGAAC-CATA-AAAAT-AACA-GTCATGA
1 TCGTAAATCAGTGAACTGTTAGAAAATCAA-AGGTCATGA
* ** * *
32085367 TCATAAATCAACGAATTGTTAGAAAATCAAAGGTCGTGA
1 TCGTAAATCAGTGAACTGTTAGAAAATCAAAGGTCATGA
* * * * * * *
32085406 TCG-AAATTTAGCGGACCG-TA-AAAATGACA-GTCATAA
1 TCGTAAA-TCAGTGAACTGTTAGAAAATCAAAGGTCATGA
*
32085442 TTGTAAATCAGTGAACTGTTAGAAAATCAAAGGTCATGA
1 TCGTAAATCAGTGAACTGTTAGAAAATCAAAGGTCATGA
* * * *
32085481 TCGTAAATCAGTGAACCG-TA-AAAATGATA-GTCGTGA
1 TCGTAAATCAGTGAACTGTTAGAAAATCAAAGGTCATGA
* * * * *
32085517 TCGTAAATCAGTGAAGTATTAGAAAATCGAAGGTCGTTA
1 TCGTAAATCAGTGAACTGTTAGAAAATCAAAGGTCATGA
*
32085556 TCATAAATCAG
1 TCGTAAATCAG
32085567 CGGACCGTAA
Statistics
Matches: 178, Mismatches: 44, Indels: 28
0.71 0.18 0.11
Matches are distributed among these distances:
36 56 0.31
37 24 0.13
38 31 0.17
39 67 0.38
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (39 bp):
TCGTAAATCAGTGAACTGTTAGAAAATCAAAGGTCATGA
Found at i:32085748 original size:36 final size:34
Alignment explanation
Indices: 32085701--32085825 Score: 97
Period size: 36 Copynumber: 3.4 Consensus size: 34
32085691 GTCTAAGGTT
*
32085701 GTGATCATAAATCAACAGACCGTAAAAATGACATTC
1 GTGATCGTAAATCAACAGACCGTAAAAATGA-A-TC
* * * * *
32085737 GTGATCGTAAATTAGCAAACTGTTAGAAAATTGTAGGTC
1 GTGATCGTAAATCAACAGACCG-TA-AAAA-TG-A-ATC
* *
32085776 GTGATAGTAAATCAACAGGCCGTAAAAATGATGATC
1 GTGATCGTAAATCAACAGACCGTAAAAATGA--ATC
32085812 GTGATCGTAAATCA
1 GTGATCGTAAATCA
32085826 GCGAATAGTT
Statistics
Matches: 69, Mismatches: 15, Indels: 10
0.73 0.16 0.11
Matches are distributed among these distances:
35 1 0.01
36 35 0.51
37 6 0.09
38 6 0.09
39 20 0.29
40 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.20, T:0.26
Consensus pattern (34 bp):
GTGATCGTAAATCAACAGACCGTAAAAATGAATC
Found at i:32085919 original size:27 final size:27
Alignment explanation
Indices: 32085888--32085955 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
32085878 GAAGTGTTCA
32085888 TGATCATAAATCAATGAACTGAAGCCG
1 TGATCATAAATCAATGAACTGAAGCCG
*
32085915 TGATCATAAATCAATGAACTGAAGTCG
1 TGATCATAAATCAATGAACTGAAGCCG
*
32085942 TGATCGTAAATCAA
1 TGATCATAAATCAA
32085956 CGAGCTTTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.41, C:0.16, G:0.18, T:0.25
Consensus pattern (27 bp):
TGATCATAAATCAATGAACTGAAGCCG
Found at i:32086027 original size:39 final size:38
Alignment explanation
Indices: 32085936--32086185 Score: 143
Period size: 36 Copynumber: 6.7 Consensus size: 38
32085926 CAATGAACTG
* * * * *
32085936 AAGTCGTGATCGTAAATCAACGAGCT-TTA-AAAATGA
1 AAGTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCA
* **
32085972 CAGTCGTGATAATAAATCAGCAAACTGTTAGAAAATCA
1 AAGTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCA
* * ** * * *
32086010 AAGGTTGTGATTGTAAATCAACGGACCG-TA-AATATGA
1 AA-GTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCA
* ** * * * *
32086047 AACTCGCAATCGTAAATCAACAAACTATTAGAAAATTGA
1 AAGTCGTGATTGTAAATCAGCAAACTGTTAGAAAA-TCA
* * ** *
32086086 ATGTTGTGATTGTAAATCAGCGGACTG-TA-AAAATGA
1 AAGTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCA
* * *
32086122 TAGTCGTGATCGTAAATTAGCAAACTGTTAGAAAATCGA
1 AAGTCGTGATTGTAAATCAGCAAACTGTTAGAAAATC-A
* *
32086161 ATGTCATGATTGTAAATCAGCAAAC
1 AAGTCGTGATTGTAAATCAGCAAAC
32086186 CGCGAGATTC
Statistics
Matches: 155, Mismatches: 50, Indels: 15
0.70 0.23 0.07
Matches are distributed among these distances:
36 59 0.38
37 18 0.12
38 19 0.12
39 59 0.38
ACGTcount: A:0.41, C:0.14, G:0.19, T:0.26
Consensus pattern (38 bp):
AAGTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCA
Found at i:32086149 original size:36 final size:39
Alignment explanation
Indices: 32085974--32086185 Score: 150
Period size: 39 Copynumber: 5.6 Consensus size: 39
32085964 AAAAATGACA
** * *
32085974 GTCGTGATAATAAATCAGCAAACTGTTAGAAAATCAAAG
1 GTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAT
* * ** * * *
32086013 GTTGTGATTGTAAATCAACGGACCG-TA-AATAT-GAAA
1 GTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAT
* ** * * * *
32086049 CTCGCAATCGTAAATCAACAAACTATTAGAAAATTGAAT
1 GTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAT
* **
32086088 GTTGTGATTGTAAATCAGCGGACTG-TA-AAAAT-G-AT
1 GTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAT
* *
32086123 AGTCGTGATCGTAAATTAGCAAACTGTTAGAAAATCGAAT
1 -GTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAT
*
32086163 GTCATGATTGTAAATCAGCAAAC
1 GTCGTGATTGTAAATCAGCAAAC
32086186 CGCGAGATTC
Statistics
Matches: 127, Mismatches: 38, Indels: 16
0.70 0.21 0.09
Matches are distributed among these distances:
35 2 0.02
36 39 0.31
37 13 0.10
38 13 0.10
39 58 0.46
40 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.27
Consensus pattern (39 bp):
GTCGTGATTGTAAATCAGCAAACTGTTAGAAAATCGAAT
Found at i:32086180 original size:75 final size:75
Alignment explanation
Indices: 32085963--32086181 Score: 276
Period size: 75 Copynumber: 2.9 Consensus size: 75
32085953 CAACGAGCTT
* ** * *
32085963 TAAAAATGACAGTCGTGATAATAAATCAGCAAACTGTTAGAAAATCAAAGGTTGTGATTGTAAAT
1 TAAAAATGAAAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAATGTTGTGATTGTAAAT
*
32086028 CAACGGACCG
66 CAGCGGACCG
* * ** * * *
32086038 TAAATATGAAACTCGCAATCGTAAATCAACAAACTATTAGAAAATTGAATGTTGTGATTGTAAAT
1 TAAAAATGAAAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAATGTTGTGATTGTAAAT
*
32086103 CAGCGGACTG
66 CAGCGGACCG
* * **
32086113 TAAAAATGATAGTCGTGATCGTAAATTAGCAAACTGTTAGAAAATCGAATGTCATGATTGTAAAT
1 TAAAAATGAAAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAATGTTGTGATTGTAAAT
32086178 CAGC
66 CAGC
32086182 AAACCGCGAG
Statistics
Matches: 119, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
75 119 1.00
ACGTcount: A:0.42, C:0.13, G:0.19, T:0.27
Consensus pattern (75 bp):
TAAAAATGAAAGTCGTGATCGTAAATCAGCAAACTGTTAGAAAATCGAATGTTGTGATTGTAAAT
CAGCGGACCG
Found at i:32100264 original size:26 final size:26
Alignment explanation
Indices: 32100233--32100286 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
32100223 TTTTCTATTT
* *
32100233 TTTAAGAAAATGAAAAGAAAATTAAC
1 TTTAAGAAAACGAAAACAAAATTAAC
32100259 TTTAAGAAAACGAAAACAAAATTAAC
1 TTTAAGAAAACGAAAACAAAATTAAC
32100285 TT
1 TT
32100287 AGGTTACCTG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.59, C:0.07, G:0.09, T:0.24
Consensus pattern (26 bp):
TTTAAGAAAACGAAAACAAAATTAAC
Found at i:32101408 original size:5 final size:5
Alignment explanation
Indices: 32101398--32101425 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
32101388 TAGAAAATAA
32101398 ATTTT ATTTT ATTTT ATTTT ATTTT ATT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATT
32101426 CAATTTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (5 bp):
ATTTT
Found at i:32101431 original size:15 final size:15
Alignment explanation
Indices: 32101397--32101436 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
32101387 ATAGAAAATA
*
32101397 AATTTTATTTTATTT
1 AATTTTATTTTATTC
*
32101412 TATTTTATTTTATTC
1 AATTTTATTTTATTC
*
32101427 AATTTCATTT
1 AATTTTATTT
32101437 AAAATTATAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (15 bp):
AATTTTATTTTATTC
Found at i:32105168 original size:23 final size:23
Alignment explanation
Indices: 32105137--32105188 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
32105127 TTGGTGGGAG
* **
32105137 CATTATGGCACTATGGTGCAACT
1 CATTCTGGCACTACAGTGCAACT
*
32105160 CATTCTGGCACTACAGTGCAATT
1 CATTCTGGCACTACAGTGCAACT
32105183 CATTCT
1 CATTCT
32105189 AGCTCTTTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (23 bp):
CATTCTGGCACTACAGTGCAACT
Found at i:32116588 original size:6 final size:6
Alignment explanation
Indices: 32116577--32116792 Score: 150
Period size: 6 Copynumber: 36.0 Consensus size: 6
32116567 ACAATTTAAA
** ** * * * *
32116577 AATAAT AATAAT AATTGT GGTAAA AATAAA AATAAT AATATT AGTAAT
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
* * * * *
32116625 AATAA- AAGTAAT AGTAAT AGTAAT AGTAAT AGTAAT AATAAC AATAAT
1 AATAAT AA-TAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
* * * *
32116673 AATATT AATATT AATTAT AATAAT GATAAT AATAAT AATAAT AATAA-
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
* * * * * * *
32116720 AGTAAGT AATAAA AATAA- ATACAAT AATAGT AATAGT AATATT AAAAAT
1 AATAA-T AATAAT AATAAT A-ATAAT AATAAT AATAAT AATAAT AATAAT
* *
32116769 AATAAT AATAAT AGTAAA AATAAT
1 AATAAT AATAAT AATAAT AATAAT
32116793 GGTAATACTA
Statistics
Matches: 166, Mismatches: 38, Indels: 12
0.77 0.18 0.06
Matches are distributed among these distances:
5 7 0.04
6 153 0.92
7 6 0.04
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (6 bp):
AATAAT
Found at i:32116813 original size:21 final size:21
Alignment explanation
Indices: 32116572--32116790 Score: 91
Period size: 21 Copynumber: 10.0 Consensus size: 21
32116562 GTAAAACAAT
*
32116572 TTAAAAATAATAATAATAATTG
1 TTAAAAATAATAATAATAA-TA
*
32116594 TGGTAAAAATAAAAATAATAATA
1 T--TAAAAATAATAATAATAATA
**
32116617 TTAGTAATAATAA-AAGTAATA
1 TTAAAAATAATAATAA-TAATA
* * *
32116638 GTAATAGTAATAGTAATAGTAATA
1 TTAA-A--AATAATAATAATAATA
* * *
32116662 ATAACAATAATAATATTAATA
1 TTAAAAATAATAATAATAATA
** *
32116683 TTAATTATAATAATGATAATA
1 TTAAAAATAATAATAATAATA
* *
32116704 ATAATAATAATAATAAAGTAAGTA
1 TTAAAAATAATAAT-AA-TAA-TA
* *
32116728 ATAAAAATAA-ATACAATAATA
1 TTAAAAATAATA-ATAATAATA
* * * * *
32116749 GTAATAGTAATATTAAAAATA
1 TTAAAAATAATAATAATAATA
* * * *
32116770 ATAATAATAATAGTAAAAATA
1 TTAAAAATAATAATAATAATA
32116791 ATGGTAATAC
Statistics
Matches: 152, Mismatches: 33, Indels: 25
0.72 0.16 0.12
Matches are distributed among these distances:
20 2 0.01
21 91 0.60
22 6 0.04
23 8 0.05
24 44 0.29
25 1 0.01
ACGTcount: A:0.60, C:0.01, G:0.07, T:0.32
Consensus pattern (21 bp):
TTAAAAATAATAATAATAATA
Found at i:32117390 original size:18 final size:18
Alignment explanation
Indices: 32117354--32117400 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
32117344 TAAACTCAAT
* **
32117354 CCAAACCCAAGTATTCAA
1 CCAAACCCAATTACCCAA
32117372 CCAAACCCAATTACCCAA
1 CCAAACCCAATTACCCAA
*
32117390 CCCAACCCAAT
1 CCAAACCCAAT
32117401 CATAAAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.43, C:0.43, G:0.02, T:0.13
Consensus pattern (18 bp):
CCAAACCCAATTACCCAA
Found at i:32117505 original size:9 final size:9
Alignment explanation
Indices: 32117491--32117575 Score: 125
Period size: 9 Copynumber: 9.4 Consensus size: 9
32117481 GTAGTGATTC
32117491 AATTCGGTT
1 AATTCGGTT
32117500 AATTCGGTT
1 AATTCGGTT
*
32117509 AATTCGGGT
1 AATTCGGTT
* *
32117518 AATCCGATT
1 AATTCGGTT
32117527 AATTCGGTT
1 AATTCGGTT
32117536 AATTCGGTT
1 AATTCGGTT
* *
32117545 AGTTCGGGT
1 AATTCGGTT
32117554 AATTCGGTT
1 AATTCGGTT
32117563 AATTCGGTT
1 AATTCGGTT
32117572 AATT
1 AATT
32117576 TTTAACTAAA
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 66 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (9 bp):
AATTCGGTT
Found at i:32117532 original size:36 final size:36
Alignment explanation
Indices: 32117486--32117575 Score: 144
Period size: 36 Copynumber: 2.5 Consensus size: 36
32117476 ATTATGTAGT
32117486 GATTCAATTCGGTTAATTCGGTTAATTCGGGTAATCC
1 GATT-AATTCGGTTAATTCGGTTAATTCGGGTAATCC
* *
32117523 GATTAATTCGGTTAATTCGGTTAGTTCGGGTAATTC
1 GATTAATTCGGTTAATTCGGTTAATTCGGGTAATCC
*
32117559 GGTTAATTCGGTTAATT
1 GATTAATTCGGTTAATT
32117576 TTTAACTAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
36 46 0.92
37 4 0.08
ACGTcount: A:0.23, C:0.12, G:0.23, T:0.41
Consensus pattern (36 bp):
GATTAATTCGGTTAATTCGGTTAATTCGGGTAATCC
Found at i:32118126 original size:17 final size:17
Alignment explanation
Indices: 32118100--32118137 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
32118090 AATAGAATAA
32118100 AAAAGAAAAAGAAAAGG
1 AAAAGAAAAAGAAAAGG
* *
32118117 AAAAGGAAAAGAAAATG
1 AAAAGAAAAAGAAAAGG
32118134 AAAA
1 AAAA
32118138 AATCACCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAGG
Found at i:32119005 original size:9 final size:8
Alignment explanation
Indices: 32118979--32119004 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
32118969 TTTTGTCTTC
32118979 TTCTTTTT
1 TTCTTTTT
32118987 TTCTTTTT
1 TTCTTTTT
32118995 TTCTTTTT
1 TTCTTTTT
32119003 TT
1 TT
32119005 TTTGCCATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (8 bp):
TTCTTTTT
Found at i:32125367 original size:48 final size:50
Alignment explanation
Indices: 32125276--32125372 Score: 119
Period size: 48 Copynumber: 2.0 Consensus size: 50
32125266 ATCTATTTCT
* * * * *
32125276 AGGTTGAAAAACCCTTTTTCTAATCAATTCCAAATAGATGAAGTGTAGTA
1 AGGTTGAAAAACCCTTATTCTAATCAATTCAAAATAAAAGAAGTATAGTA
32125326 AGGTT-AAAAA-CCTTATTCTAATCAATGT-AAAATAAAAGAAGTATAGT
1 AGGTTGAAAAACCCTTATTCTAATCAAT-TCAAAATAAAAGAAGTATAGT
32125373 TCTATCTGGA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
48 30 0.73
49 6 0.15
50 5 0.12
ACGTcount: A:0.43, C:0.11, G:0.14, T:0.31
Consensus pattern (50 bp):
AGGTTGAAAAACCCTTATTCTAATCAATTCAAAATAAAAGAAGTATAGTA
Found at i:32131685 original size:7 final size:7
Alignment explanation
Indices: 32131675--32131715 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
32131665 TAAAAGGTAA
32131675 AAATAAT
1 AAATAAT
32131682 AAATAAT
1 AAATAAT
32131689 AAATAAT
1 AAATAAT
32131696 AAATAAT
1 AAATAAT
32131703 AAATAAT
1 AAATAAT
32131710 AAATAA
1 AAATAA
32131716 AACATACAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAATAAT
Found at i:32132875 original size:23 final size:23
Alignment explanation
Indices: 32132840--32132905 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
32132830 GCTCAACTAT
**
32132840 ATGTTCATGAACATGTTCATTTA
1 ATGTTCACAAACATGTTCATTTA
* *
32132863 ATGTTCGCAAACATGATT-GTTTA
1 ATGTTCACAAACATG-TTCATTTA
*
32132886 ATGTTCACAAACAAGTTCAT
1 ATGTTCACAAACATGTTCAT
32132906 CTAACTTAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 4
0.76 0.16 0.09
Matches are distributed among these distances:
22 2 0.06
23 30 0.88
24 2 0.06
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (23 bp):
ATGTTCACAAACATGTTCATTTA
Found at i:32141097 original size:16 final size:14
Alignment explanation
Indices: 32141059--32141093 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
32141049 CTATTTTTAC
32141059 ATATATTAATAAAT
1 ATATATTAATAAAT
32141073 ATATATTAATAAAT
1 ATATATTAATAAAT
*
32141087 TTATATT
1 ATATATT
32141094 TTAAATTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
ATATATTAATAAAT
Found at i:32142376 original size:32 final size:32
Alignment explanation
Indices: 32142330--32142390 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
32142320 TGTCAATCAT
32142330 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCCAACAAGCTTAAAACATAATAAA
*
32142362 TTCAATATCTAACAAGCTTAAAACATAAT
1 TTCAATATCCAACAAGCTTAAAACATAAT
32142391 CAATATCTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.51, C:0.18, G:0.03, T:0.28
Consensus pattern (32 bp):
TTCAATATCCAACAAGCTTAAAACATAATAAA
Found at i:32142397 original size:27 final size:30
Alignment explanation
Indices: 32142330--32142403 Score: 100
Period size: 32 Copynumber: 2.5 Consensus size: 30
32142320 TGTCAATCAT
*
32142330 TTCAATATCCAACAAGCTTAAAACATAATAAA
1 TTCAATATCTAACAAGCTTAAAAC--AATAAA
32142362 TTCAATATCTAACAAGCTTAAAAC-AT-AA
1 TTCAATATCTAACAAGCTTAAAACAATAAA
32142390 -TCAATATCTAACAA
1 TTCAATATCTAACAA
32142404 ATTCAAGACA
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
27 14 0.34
28 2 0.05
29 2 0.05
32 23 0.56
ACGTcount: A:0.51, C:0.19, G:0.03, T:0.27
Consensus pattern (30 bp):
TTCAATATCTAACAAGCTTAAAACAATAAA
Found at i:32142414 original size:27 final size:27
Alignment explanation
Indices: 32142331--32142417 Score: 77
Period size: 27 Copynumber: 3.0 Consensus size: 27
32142321 GTCAATCATT
* *
32142331 TCAATATCCAACAAGCTTAAAACATAATAAA
1 TCAATATCTAACAAGATTAAAAC---AT-AA
*
32142362 TTCAATATCTAACAAGCTTAAAACATAA
1 -TCAATATCTAACAAGATTAAAACATAA
*
32142390 TCAATATCTAACAA-ATTCAAGACATAA
1 TCAATATCTAACAAGATT-AAAACATAA
32142417 T
1 T
32142418 AATTTCAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
26 2 0.04
27 23 0.45
28 2 0.04
29 2 0.04
32 22 0.43
ACGTcount: A:0.52, C:0.18, G:0.03, T:0.26
Consensus pattern (27 bp):
TCAATATCTAACAAGATTAAAACATAA
Found at i:32142623 original size:12 final size:12
Alignment explanation
Indices: 32142606--32142634 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
32142596 TAGCAGACCG
32142606 TTCTCTTTCTTC
1 TTCTCTTTCTTC
32142618 TTCTCTTTCTTC
1 TTCTCTTTCTTC
32142630 -TCTCT
1 TTCTCT
32142635 CCGTAAGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 5 0.29
12 12 0.71
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (12 bp):
TTCTCTTTCTTC
Found at i:32149013 original size:21 final size:21
Alignment explanation
Indices: 32148987--32149035 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
32148977 CACTATACAA
32148987 GTTATGGATTTTGACTCAATG
1 GTTATGGATTTTGACTCAATG
* *
32149008 GTTATGAATTTTGACTTAATG
1 GTTATGGATTTTGACTCAATG
32149029 GTTATGG
1 GTTATGG
32149036 GAATCCCATG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.24, C:0.06, G:0.24, T:0.45
Consensus pattern (21 bp):
GTTATGGATTTTGACTCAATG
Found at i:32175271 original size:14 final size:14
Alignment explanation
Indices: 32175252--32175321 Score: 83
Period size: 14 Copynumber: 5.0 Consensus size: 14
32175242 CAGGTAGGAT
32175252 GAAAGAAAAGAGAA
1 GAAAGAAAAGAGAA
32175266 GAAAGAAAAGAGAA
1 GAAAGAAAAGAGAA
32175280 -AAAGGAAAAGAGAA
1 GAAA-GAAAAGAGAA
*
32175294 GCAAGAAAA-AGGAA
1 GAAAGAAAAGA-GAA
32175308 -AAAGGAAAAGAGAA
1 GAAA-GAAAAGAGAA
32175322 CGAAGGATGT
Statistics
Matches: 49, Mismatches: 2, Indels: 10
0.80 0.03 0.16
Matches are distributed among these distances:
13 6 0.12
14 40 0.82
15 3 0.06
ACGTcount: A:0.70, C:0.01, G:0.29, T:0.00
Consensus pattern (14 bp):
GAAAGAAAAGAGAA
Found at i:32175279 original size:7 final size:7
Alignment explanation
Indices: 32175255--32175321 Score: 54
Period size: 7 Copynumber: 9.6 Consensus size: 7
32175245 GTAGGATGAA
32175255 AGAAAAG
1 AGAAAAG
32175262 AGAAGAA-
1 AGAA-AAG
32175269 AGAAAAG
1 AGAAAAG
32175276 AGAAAA-
1 AGAAAAG
32175282 AGGAAAAG
1 A-GAAAAG
32175290 AGAAGCAAG
1 AGAA--AAG
32175299 A-AAAAG
1 AGAAAAG
32175305 -GAAAA-
1 AGAAAAG
32175310 AGGAAAAG
1 A-GAAAAG
32175318 AGAA
1 AGAA
32175322 CGAAGGATGT
Statistics
Matches: 50, Mismatches: 0, Indels: 20
0.71 0.00 0.29
Matches are distributed among these distances:
6 10 0.20
7 30 0.60
8 6 0.12
9 4 0.08
ACGTcount: A:0.70, C:0.01, G:0.28, T:0.00
Consensus pattern (7 bp):
AGAAAAG
Found at i:32175289 original size:28 final size:28
Alignment explanation
Indices: 32175256--32175321 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
32175246 TAGGATGAAA
32175256 GAAAAGAGAAGAAAG-AAAAGAGAAAAAG
1 GAAAAGAGAAGAAAGAAAAAG-GAAAAAG
*
32175284 GAAAAGAGAAGCAAGAAAAAGGAAAAAG
1 GAAAAGAGAAGAAAGAAAAAGGAAAAAG
32175312 GAAAAGAGAA
1 GAAAAGAGAA
32175322 CGAAGGATGT
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
28 31 0.86
29 5 0.14
ACGTcount: A:0.70, C:0.02, G:0.29, T:0.00
Consensus pattern (28 bp):
GAAAAGAGAAGAAAGAAAAAGGAAAAAG
Found at i:32177544 original size:21 final size:23
Alignment explanation
Indices: 32177492--32177536 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
32177482 ATGTAAGCAA
*
32177492 ACATCTTTTCCATCTAAAGTTAG
1 ACATGTTTTCCATCTAAAGTTAG
32177515 ACATGTTTTCCAT-TAAA-TTAG
1 ACATGTTTTCCATCTAAAGTTAG
32177536 A
1 A
32177537 GTTTTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 4 0.19
23 12 0.57
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.40
Consensus pattern (23 bp):
ACATGTTTTCCATCTAAAGTTAG
Found at i:32180881 original size:35 final size:35
Alignment explanation
Indices: 32180809--32180955 Score: 127
Period size: 35 Copynumber: 4.2 Consensus size: 35
32180799 AAGATTATCA
* * ** *
32180809 ATAGGTCCTTCGGCG-CAACACCGTGTAAATGACAT
1 ATAGGTCCTTCGG-GACGATACCGTGTAAACAATAT
* * * *
32180844 ATAAGTCATTCGGGGCGATACCATGTAAACAATAT
1 ATAGGTCCTTCGGGACGATACCGTGTAAACAATAT
* * **
32180879 ATAGGTCCTTTGAGAC-AGTACCGTGTAATTAATAT
1 ATAGGTCCTTCGGGACGA-TACCGTGTAAACAATAT
* *
32180914 ATAGGTCCTTCGGGACGACACGGTGTAAACAATAT
1 ATAGGTCCTTCGGGACGATACCGTGTAAACAATAT
32180949 ATAGGTC
1 ATAGGTC
32180956 TTTTGGGGCG
Statistics
Matches: 87, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
34 2 0.02
35 84 0.97
36 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (35 bp):
ATAGGTCCTTCGGGACGATACCGTGTAAACAATAT
Found at i:32180902 original size:70 final size:70
Alignment explanation
Indices: 32180828--32180960 Score: 176
Period size: 70 Copynumber: 1.9 Consensus size: 70
32180818 TCGGCGCAAC
* * *
32180828 ACCGTGTAAATGACATATAAGTCATTCGGGGCGATACCATGTAAACAATATATAGGTCCTTTGAG
1 ACCGTGTAAATAACATATAAGTCATTCGGGACGACACCATGTAAACAATATATAGGTCCTTTGAG
32180893 ACAGT
66 ACAGT
* * * * ** *
32180898 ACCGTGTAATTAATATATAGGTCCTTCGGGACGACACGGTGTAAACAATATATAGGTCTTTTG
1 ACCGTGTAAATAACATATAAGTCATTCGGGACGACACCATGTAAACAATATATAGGTCCTTTG
32180961 GGGCGACACC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
70 53 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.29
Consensus pattern (70 bp):
ACCGTGTAAATAACATATAAGTCATTCGGGACGACACCATGTAAACAATATATAGGTCCTTTGAG
ACAGT
Found at i:32180968 original size:35 final size:34
Alignment explanation
Indices: 32180867--32180969 Score: 118
Period size: 35 Copynumber: 3.0 Consensus size: 34
32180857 GGCGATACCA
*
32180867 TGTAAACAATATATAGGTCCTTTGAGACAGTAC-CG
1 TGTAAACAATATATAGGTCCTTTGGGAC-G-ACACG
** *
32180902 TGTAATTAATATATAGGTCCTTCGGGACGACACGG
1 TGTAAACAATATATAGGTCCTTTGGGACGACAC-G
* *
32180937 TGTAAACAATATATAGGTCTTTTGGGGCGACAC
1 TGTAAACAATATATAGGTCCTTTGGGACGACAC
32180970 CTCAAAAACG
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
33 2 0.04
34 2 0.04
35 53 0.93
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (34 bp):
TGTAAACAATATATAGGTCCTTTGGGACGACACG
Found at i:32183369 original size:12 final size:12
Alignment explanation
Indices: 32183352--32183386 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
32183342 GTTCGCAAAT
32183352 AAAAACATAAAG
1 AAAAACATAAAG
* *
32183364 AAAAACACAAGG
1 AAAAACATAAAG
32183376 AAAAACATAAA
1 AAAAACATAAA
32183387 AATAATGAAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.74, C:0.11, G:0.09, T:0.06
Consensus pattern (12 bp):
AAAAACATAAAG
Found at i:32184884 original size:27 final size:28
Alignment explanation
Indices: 32184854--32184923 Score: 72
Period size: 27 Copynumber: 2.6 Consensus size: 28
32184844 GAACCCTAGC
**
32184854 TCACCAGGCCTACTGGCGTACTTCAA-T
1 TCACCAGGCCTACTGAAGTACTTCAACT
* * *
32184881 TCACTATGTCTACTGAAGTACTTCAACT
1 TCACCAGGCCTACTGAAGTACTTCAACT
*
32184909 T-GCCAGGCCTACTGA
1 TCACCAGGCCTACTGA
32184924 TAACTCTCGA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
27 31 0.94
28 2 0.06
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (28 bp):
TCACCAGGCCTACTGAAGTACTTCAACT
Found at i:32192226 original size:12 final size:13
Alignment explanation
Indices: 32192205--32192238 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
32192195 AATAATTTGG
*
32192205 ATTAAAATTATGA
1 ATTAATATTATGA
32192218 ATT-ATATTATGA
1 ATTAATATTATGA
32192230 ATTAATATT
1 ATTAATATT
32192239 CATAATTTGG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.47, C:0.00, G:0.06, T:0.47
Consensus pattern (13 bp):
ATTAATATTATGA
Found at i:32200568 original size:102 final size:102
Alignment explanation
Indices: 32200392--32200588 Score: 376
Period size: 102 Copynumber: 1.9 Consensus size: 102
32200382 GTGAAGTAAG
32200392 TTAATTATCAAATTTGTATGAGCTTACTAAGTATTATTAATACTTACATCTAAAATGCTTTAATC
1 TTAATTATCAAATTTGTATGAGCTTACTAAGTATTATTAATACTTACATCTAAAATGCTTTAATC
32200457 TTGTAGATTTTGAACGTTCAAAGTTTGTTGTTTAATA
66 TTGTAGATTTTGAACGTTCAAAGTTTGTTGTTTAATA
*
32200494 TTAATTATCAAATTTGTATGAGCTTACTAAGTATTATTAATACTTACGTCTAAAATGCTTTAATC
1 TTAATTATCAAATTTGTATGAGCTTACTAAGTATTATTAATACTTACATCTAAAATGCTTTAATC
*
32200559 TTTTAGATTTTGAACGTTCAAAGTTTGTTG
66 TTGTAGATTTTGAACGTTCAAAGTTTGTTG
32200589 ATCGGATCGG
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 93 1.00
ACGTcount: A:0.32, C:0.10, G:0.12, T:0.45
Consensus pattern (102 bp):
TTAATTATCAAATTTGTATGAGCTTACTAAGTATTATTAATACTTACATCTAAAATGCTTTAATC
TTGTAGATTTTGAACGTTCAAAGTTTGTTGTTTAATA
Found at i:32201363 original size:15 final size:15
Alignment explanation
Indices: 32201343--32201374 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
32201333 TGTTACTGTC
*
32201343 AATAAATAAATAAAA
1 AATAAAAAAATAAAA
32201358 AATAAAAAAATAAAA
1 AATAAAAAAATAAAA
32201373 AA
1 AA
32201375 ATATCAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (15 bp):
AATAAAAAAATAAAA
Found at i:32201373 original size:9 final size:8
Alignment explanation
Indices: 32201343--32201377 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
32201333 TGTTACTGTC
*
32201343 AATAAATA
1 AATAAAAA
32201351 AAT-AAAA
1 AATAAAAA
32201358 AATAAAAA
1 AATAAAAA
32201366 AATAAAAA
1 AATAAAAA
32201374 AATA
1 AATA
32201378 TCAACTTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (8 bp):
AATAAAAA
Found at i:32205522 original size:43 final size:42
Alignment explanation
Indices: 32205373--32205522 Score: 110
Period size: 43 Copynumber: 3.5 Consensus size: 42
32205363 TGCCTAGGTG
* *
32205373 AGACC-AAAAGGGTATCTTAAGTGGTAATCCTTAGTGAAGATG
1 AGACCGAAAA-GGTATCTTAAGTAGTAATCCTTAGTGAAGATA
* * * ** * *
32205415 AGATCGAAAAGGTATTCTTAACTAAG-GATGGTAAATACTTAA-ATTA
1 AGACCGAAAAGGTA-TCTTAAGT-AGTAATCCT---TAGTGAAGA-TA
*
32205461 AG-CCGAAAGGGTATCTTAAGTAGTAATCCTTAGTGAAGATA
1 AGACCGAAAAGGTATCTTAAGTAGTAATCCTTAGTGAAGATA
32205502 AGACCGAAAAGGTATTCTTAA
1 AGACCGAAAAGGTA-TCTTAA
32205523 CTAAGGATGG
Statistics
Matches: 79, Mismatches: 18, Indels: 21
0.67 0.15 0.18
Matches are distributed among these distances:
41 9 0.11
42 19 0.24
43 22 0.28
44 11 0.14
45 10 0.13
46 8 0.10
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.27
Consensus pattern (42 bp):
AGACCGAAAAGGTATCTTAAGTAGTAATCCTTAGTGAAGATA
Found at i:32205525 original size:87 final size:87
Alignment explanation
Indices: 32205379--32205549 Score: 315
Period size: 87 Copynumber: 2.0 Consensus size: 87
32205369 GGTGAGACCA
* * *
32205379 AAAGGGTATCTTAAGTGGTAATCCTTAGTGAAGATGAGATCGAAAAGGTATTCTTAACTAAGGAT
1 AAAGGGTATCTTAAGTAGTAATCCTTAGTGAAGATAAGACCGAAAAGGTATTCTTAACTAAGGAT
32205444 GGTAAATACTTAAATTAAGCCG
66 GGTAAATACTTAAATTAAGCCG
32205466 AAAGGGTATCTTAAGTAGTAATCCTTAGTGAAGATAAGACCGAAAAGGTATTCTTAACTAAGGAT
1 AAAGGGTATCTTAAGTAGTAATCCTTAGTGAAGATAAGACCGAAAAGGTATTCTTAACTAAGGAT
32205531 GGTAAATACTTAAATTAAG
66 GGTAAATACTTAAATTAAG
32205550 GGTAATTATC
Statistics
Matches: 81, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
87 81 1.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.29
Consensus pattern (87 bp):
AAAGGGTATCTTAAGTAGTAATCCTTAGTGAAGATAAGACCGAAAAGGTATTCTTAACTAAGGAT
GGTAAATACTTAAATTAAGCCG
Found at i:32213864 original size:19 final size:21
Alignment explanation
Indices: 32213840--32213882 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
32213830 TTTCTCTAAC
*
32213840 TTTATCT-C-TTTATATCATT
1 TTTATCTACTTTTATATAATT
32213859 TTTATCTACTTTTATATAATT
1 TTTATCTACTTTTATATAATT
32213880 TTT
1 TTT
32213883 TATTTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 1 0.05
21 13 0.62
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (21 bp):
TTTATCTACTTTTATATAATT
Found at i:32214608 original size:21 final size:18
Alignment explanation
Indices: 32214563--32214613 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 18
32214553 CATATATTAT
32214563 TTTTAAT-TTTTTAAAAA
1 TTTTAATATTTTTAAAAA
32214580 TTTT-ATATTTTTAAATTAA
1 TTTTAATATTTTTAAA--AA
32214599 TATTTAATATTTTTA
1 T-TTTAATATTTTTA
32214614 TATTTTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
16 2 0.07
17 12 0.41
19 3 0.10
20 3 0.10
21 9 0.31
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTAATATTTTTAAAAA
Found at i:32214621 original size:37 final size:38
Alignment explanation
Indices: 32214579--32214662 Score: 104
Period size: 38 Copynumber: 2.3 Consensus size: 38
32214569 TTTTTTAAAA
* *
32214579 ATTTTATATTT-TTAAA-TTAATATTT-AATATTTTTAT
1 ATTTT-TATTTATTAAATTTAATATTTAAACATTTTAAT
*
32214615 ATTTTTATTTATTAAATTTTATATTTAAACATTTTAAT
1 ATTTTTATTTATTAAATTTAATATTTAAACATTTTAAT
32214653 ATTTTT-TTTA
1 ATTTTTATTTA
32214663 ATATTTACAT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
35 5 0.12
36 10 0.24
37 12 0.29
38 15 0.36
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (38 bp):
ATTTTTATTTATTAAATTTAATATTTAAACATTTTAAT
Found at i:32214623 original size:21 final size:21
Alignment explanation
Indices: 32214579--32214641 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
32214569 TTTTTTAAAA
* * *
32214579 ATTTTATATTTTTAAATTAAT
1 ATTTAATATTTTTATATTTAT
*
32214600 ATTTAATATTTTTATATTTTT
1 ATTTAATATTTTTATATTTAT
* *
32214621 ATTTATTAAATTTTATATTTA
1 ATTTAAT-ATTTTTATATTTA
32214642 AACATTTTAA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
21 23 0.68
22 11 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (21 bp):
ATTTAATATTTTTATATTTAT
Found at i:32214656 original size:8 final size:8
Alignment explanation
Indices: 32214595--32214657 Score: 53
Period size: 8 Copynumber: 8.2 Consensus size: 8
32214585 TATTTTTAAA
32214595 TTAATA-T
1 TTAATATT
32214602 TTAATATT
1 TTAATATT
*
32214610 TTTATATT
1 TTAATATT
*
32214618 TTTAT-TT
1 TTAATATT
32214625 ATTAA-ATT
1 -TTAATATT
32214633 TT-ATATT
1 TTAATATT
* *
32214640 TAAACATT
1 TTAATATT
32214648 TTAATATT
1 TTAATATT
32214656 TT
1 TT
32214658 TTTTAATATT
Statistics
Matches: 45, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
6 1 0.02
7 14 0.31
8 30 0.67
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (8 bp):
TTAATATT
Found at i:32215838 original size:16 final size:18
Alignment explanation
Indices: 32215817--32215851 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
32215807 TTCTCCATTC
32215817 TTTA-TTTA-TTCTCTTT
1 TTTATTTTATTTCTCTTT
32215833 TTTATTTTATTTCTCTTT
1 TTTATTTTATTTCTCTTT
32215851 T
1 T
32215852 CTTGACACCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 4 0.24
18 9 0.53
ACGTcount: A:0.11, C:0.11, G:0.00, T:0.77
Consensus pattern (18 bp):
TTTATTTTATTTCTCTTT
Found at i:32224964 original size:19 final size:18
Alignment explanation
Indices: 32224940--32224994 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
32224930 ATTGCTAATG
*
32224940 TATTAAATAATAAAAGTAT
1 TATTAAATAATAAAA-TAA
*
32224959 TATTAAAT-ATAATATAA
1 TATTAAATAATAAAATAA
32224976 TATTAAAATAATAATAATA
1 TATT-AAATAATAA-AATA
32224995 TAGTAAACAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 6 0.20
18 9 0.30
19 12 0.40
20 3 0.10
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
TATTAAATAATAAAATAA
Found at i:32230746 original size:33 final size:34
Alignment explanation
Indices: 32230672--32230754 Score: 91
Period size: 33 Copynumber: 2.5 Consensus size: 34
32230662 TACTGTAATG
* *
32230672 ATCTGTTATAAGTATGATAATTGCTATTGTATATA
1 ATCTGTTATAAGCATG-TAATTGCTATCGTATATA
* *
32230707 CT-TGTTATAAGCATGTTATTGCTATCGTAT-TA
1 ATCTGTTATAAGCATGTAATTGCTATCGTATATA
*
32230739 ATCTGTTA-CAGCATGT
1 ATCTGTTATAAGCATGT
32230755 CATGTTGCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
32 10 0.24
33 18 0.44
34 12 0.29
35 1 0.02
ACGTcount: A:0.29, C:0.11, G:0.16, T:0.45
Consensus pattern (34 bp):
ATCTGTTATAAGCATGTAATTGCTATCGTATATA
Found at i:32230879 original size:45 final size:45
Alignment explanation
Indices: 32230820--32230937 Score: 148
Period size: 45 Copynumber: 2.6 Consensus size: 45
32230810 TCTGCACTGT
* **
32230820 TTAGTGGTTAATCCACATCGTATTAGCAACTTTTATTTGCACCGAA
1 TTAGTGGTTTATCCACATCGTATTAGCAACTTTTATCGGCACC-AA
*
32230866 -TAGTGGTTTATCCACATCGTATTAGTAACTTTTATCGGCACCAA
1 TTAGTGGTTTATCCACATCGTATTAGCAACTTTTATCGGCACCAA
* * * *
32230910 TTTGTGGTCTATCCACACCGTACTAGCA
1 TTAGTGGTTTATCCACATCGTATTAGCA
32230938 GTTCATTTGT
Statistics
Matches: 62, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
44 2 0.03
45 60 0.97
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (45 bp):
TTAGTGGTTTATCCACATCGTATTAGCAACTTTTATCGGCACCAA
Found at i:32239527 original size:39 final size:39
Alignment explanation
Indices: 32239483--32239605 Score: 158
Period size: 45 Copynumber: 3.0 Consensus size: 39
32239473 ATCCAACCTA
*
32239483 ACCCAATTACCCAACCCAATAAAGCTAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
*
32239522 ACCCAATCACCCAACCCAATAAAACTAAAACTAAAACTAAAGTCT
1 ACCCAATTACCCAACCC-----AA-TAAAACTAAAACTAAAGTCT
*
32239567 ACCCAATTA-CCAACCCAATAAAAATAAAACTAAAGTCT
1 ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
32239605 A
1 A
32239606 ACTCTTAAGT
Statistics
Matches: 74, Mismatches: 4, Indels: 13
0.81 0.04 0.14
Matches are distributed among these distances:
38 20 0.27
39 18 0.24
44 9 0.12
45 27 0.36
ACGTcount: A:0.50, C:0.29, G:0.03, T:0.17
Consensus pattern (39 bp):
ACCCAATTACCCAACCCAATAAAACTAAAACTAAAGTCT
Found at i:32239557 original size:45 final size:44
Alignment explanation
Indices: 32239500--32239600 Score: 166
Period size: 45 Copynumber: 2.3 Consensus size: 44
32239490 TACCCAACCC
*
32239500 AATAAAGCTAAAACTAAAGTCTACCCAATCACCCAACCCAATAAA
1 AATAAAACTAAAACTAAAGTCTACCCAATCA-CCAACCCAATAAA
* *
32239545 ACTAAAACTAAAACTAAAGTCTACCCAATTACCAACCCAATAAA
1 AATAAAACTAAAACTAAAGTCTACCCAATCACCAACCCAATAAA
32239589 AATAAAACTAAA
1 AATAAAACTAAA
32239601 GTCTAACTCT
Statistics
Matches: 52, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
44 24 0.46
45 28 0.54
ACGTcount: A:0.54, C:0.26, G:0.03, T:0.17
Consensus pattern (44 bp):
AATAAAACTAAAACTAAAGTCTACCCAATCACCAACCCAATAAA
Found at i:32239761 original size:37 final size:37
Alignment explanation
Indices: 32239734--32239808 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
32239724 TGTTAATTTC
* *
32239734 AAGAATTATGTAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
* *
32239771 AAGAATTATGTAATATTTTTAATTATATAGTGATTCA
1 AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
32239808 A
1 A
32239809 TTCGGGTAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (37 bp):
AAGAATTATGTAATATTTTTAATTATGTAGTAATTCA
Found at i:32239821 original size:9 final size:9
Alignment explanation
Indices: 32239807--32239837 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
32239797 ATAGTGATTC
32239807 AATTCGGGT
1 AATTCGGGT
32239816 AATTCGGGT
1 AATTCGGGT
*
32239825 AATTCGGTT
1 AATTCGGGT
32239834 AATT
1 AATT
32239838 TTTAACTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.26, C:0.10, G:0.26, T:0.39
Consensus pattern (9 bp):
AATTCGGGT
Found at i:32241029 original size:21 final size:21
Alignment explanation
Indices: 32241005--32241057 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
32240995 ATTTTAACAA
*
32241005 TTTTAAATATATTTTTA-TATT
1 TTTTAAATAT-TTTATATTATT
* *
32241026 TTTTGAGTATTTTATATTATT
1 TTTTAAATATTTTATATTATT
*
32241047 TTATAAATATT
1 TTTTAAATATT
32241058 AATAATGTTT
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 5 0.20
21 20 0.80
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTAAATATTTTATATTATT
Found at i:32242463 original size:27 final size:26
Alignment explanation
Indices: 32242412--32242463 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
32242402 GTTATGAAAT
*
32242412 AAAGAAAGATAGAGAGAATAAAGAAC
1 AAAGAAAGATAGAAAGAATAAAGAAC
*
32242438 AAAGAAA-ATATGAAAGCAATAGAGAA
1 AAAGAAAGATA-GAAAG-AATAAAGAA
32242464 TGTACTTTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 3 0.14
26 11 0.50
27 8 0.36
ACGTcount: A:0.65, C:0.04, G:0.21, T:0.10
Consensus pattern (26 bp):
AAAGAAAGATAGAAAGAATAAAGAAC
Found at i:32244056 original size:18 final size:18
Alignment explanation
Indices: 32244030--32244068 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
32244020 CTCGAGAAAC
* *
32244030 TTTATATCCTTCTGGGAT
1 TTTAAATCCTTCAGGGAT
32244048 TTTAAATCCTTCAGGGAT
1 TTTAAATCCTTCAGGGAT
32244066 TTT
1 TTT
32244069 CATATAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.15, G:0.15, T:0.49
Consensus pattern (18 bp):
TTTAAATCCTTCAGGGAT
Found at i:32249392 original size:43 final size:43
Alignment explanation
Indices: 32249323--32249425 Score: 172
Period size: 43 Copynumber: 2.4 Consensus size: 43
32249313 TACATATAAC
32249323 TAACATTTCA-TCTATGAATGTTTCAATTTAGTATTCAAATCACA
1 TAACATTTCATTC-AT-AATGTTTCAATTTAGTATTCAAATCACA
32249367 TAACATTTCATTCATAATGTTTCAATTTAGTATTCAAATCACA
1 TAACATTTCATTCATAATGTTTCAATTTAGTATTCAAATCACA
*
32249410 TAGCATTTCATTCATA
1 TAACATTTCATTCATA
32249426 CATTTCATGA
Statistics
Matches: 57, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
43 43 0.75
44 12 0.21
45 2 0.04
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.42
Consensus pattern (43 bp):
TAACATTTCATTCATAATGTTTCAATTTAGTATTCAAATCACA
Found at i:32259297 original size:22 final size:22
Alignment explanation
Indices: 32259271--32259330 Score: 77
Period size: 22 Copynumber: 2.8 Consensus size: 22
32259261 GTCACAAGCG
32259271 TGTGCCTCCCTTCACATAGGCA
1 TGTGCCTCCCTTCACATAGGCA
* * *
32259293 TGTGCCGCCCTTCACATGGGCG
1 TGTGCCTCCCTTCACATAGGCA
*
32259315 CGTGCCT-CCTTCACAT
1 TGTGCCTCCCTTCACAT
32259331 GGGCGTGTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
21 9 0.27
22 24 0.73
ACGTcount: A:0.13, C:0.38, G:0.22, T:0.27
Consensus pattern (22 bp):
TGTGCCTCCCTTCACATAGGCA
Found at i:32260876 original size:23 final size:24
Alignment explanation
Indices: 32260845--32260889 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
32260835 AAAAAAAAGA
32260845 AAAATAAGAAAAGAAAAGAAAACG
1 AAAATAAGAAAAGAAAAGAAAACG
* *
32260869 AAAA-AAGAAGAGAAAATAAAA
1 AAAATAAGAAAAGAAAAGAAAA
32260890 AAATAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.78, C:0.02, G:0.16, T:0.04
Consensus pattern (24 bp):
AAAATAAGAAAAGAAAAGAAAACG
Found at i:32260892 original size:18 final size:18
Alignment explanation
Indices: 32260833--32260892 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
32260823 AGTAGACTTG
*
32260833 AAAAAAAAAAGA-AAAAT
1 AAAAAAAGAAGAGAAAAT
* * *
32260850 AAGAAAAGAAAAGAAAAC
1 AAAAAAAGAAGAGAAAAT
*
32260868 GAAAAAAGAAGAGAAAAT
1 AAAAAAAGAAGAGAAAAT
32260886 AAAAAAA
1 AAAAAAA
32260893 TAAAAAAAGA
Statistics
Matches: 33, Mismatches: 9, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
17 9 0.27
18 24 0.73
ACGTcount: A:0.82, C:0.02, G:0.13, T:0.03
Consensus pattern (18 bp):
AAAAAAAGAAGAGAAAAT
Found at i:32261628 original size:22 final size:22
Alignment explanation
Indices: 32261603--32261645 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
32261593 GTTATGCACA
32261603 TGTATCTAATCTATTCTACATT
1 TGTATCTAATCTATTCTACATT
* * *
32261625 TGTATCTGATTTGTTCTACAT
1 TGTATCTAATCTATTCTACAT
32261646 CTTACCTGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.23, C:0.16, G:0.09, T:0.51
Consensus pattern (22 bp):
TGTATCTAATCTATTCTACATT
Found at i:32272807 original size:85 final size:85
Alignment explanation
Indices: 32272656--32272904 Score: 336
Period size: 85 Copynumber: 2.9 Consensus size: 85
32272646 TCTACAAAGA
* * * *
32272656 ATGTGGTTCAATTATGAACCAAGTGACAGTTTGTTTAGTTTGCAAATATGTTGTGCACTCACAAC
1 ATGTGGTTCAATCATGAACCAAGTGGCAGTTTGTTTAATATGCAAATATGTTGTGCACTCACAAC
* *
32272721 AAGTGATAGTAACTGCAAAT
66 AAGTGACAATAACTGCAAAT
* * *
32272741 ATGTGGTTCAATCATGAACTAAGTGGCAGTTTGTTTAATATGCAAATATGTTGTGCATTCATAAC
1 ATGTGGTTCAATCATGAACCAAGTGGCAGTTTGTTTAATATGCAAATATGTTGTGCACTCACAAC
*
32272806 AAGTGGCAATAACTGCAAAT
66 AAGTGACAATAACTGCAAAT
** * * * *
32272826 ATGTGGTTTGATCATAAACCAAGTGGTAGTTTGTTTAATATTCAAATATGTTGTGCACCCACAAC
1 ATGTGGTTCAATCATGAACCAAGTGGCAGTTTGTTTAATATGCAAATATGTTGTGCACTCACAAC
* *
32272891 AAATGCCAATAACT
66 AAGTGACAATAACT
32272905 ATAAATCAGC
Statistics
Matches: 143, Mismatches: 21, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
85 143 1.00
ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33
Consensus pattern (85 bp):
ATGTGGTTCAATCATGAACCAAGTGGCAGTTTGTTTAATATGCAAATATGTTGTGCACTCACAAC
AAGTGACAATAACTGCAAAT
Found at i:32273210 original size:26 final size:26
Alignment explanation
Indices: 32273181--32273234 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
32273171 TGATACTTTG
32273181 ATTTGTTAGTTATCCATAATTATCCT
1 ATTTGTTAGTTATCCATAATTATCCT
32273207 ATTTGTTAGTTATCCATAATTATCCT
1 ATTTGTTAGTTATCCATAATTATCCT
32273233 AT
1 AT
32273235 GCATTATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.28, C:0.15, G:0.07, T:0.50
Consensus pattern (26 bp):
ATTTGTTAGTTATCCATAATTATCCT
Found at i:32276798 original size:23 final size:23
Alignment explanation
Indices: 32276766--32276810 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
32276756 ATCACTCTAC
*
32276766 TTTTTCAAATTCAATTATTAATA
1 TTTTTAAAATTCAATTATTAATA
**
32276789 TTTTTAAAATTCTTTTATTAAT
1 TTTTTAAAATTCAATTATTAAT
32276811 TTTAGCTTCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.58
Consensus pattern (23 bp):
TTTTTAAAATTCAATTATTAATA
Found at i:32298753 original size:23 final size:23
Alignment explanation
Indices: 32298723--32298768 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
32298713 CAAAATCAAG
32298723 TCCAAGGTAATGAAGCCAATAAT
1 TCCAAGGTAATGAAGCCAATAAT
*
32298746 TCCAAGGTAATGGAGCCAATAAT
1 TCCAAGGTAATGAAGCCAATAAT
32298769 GTACAAATTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.22
Consensus pattern (23 bp):
TCCAAGGTAATGAAGCCAATAAT
Found at i:32308024 original size:42 final size:42
Alignment explanation
Indices: 32307977--32308091 Score: 212
Period size: 42 Copynumber: 2.7 Consensus size: 42
32307967 ATTATGTGCC
32307977 ATATCCAATGGTAAACCAACCACTTGAACCAAATGTTTTAAA
1 ATATCCAATGGTAAACCAACCACTTGAACCAAATGTTTTAAA
32308019 ATATCCAATGGTAAACCAACCACTTGAACCAAATGTTTTAAA
1 ATATCCAATGGTAAACCAACCACTTGAACCAAATGTTTTAAA
*
32308061 ATATCCAATGGTAAACCAACCAGTTGGAACC
1 ATATCCAATGGTAAACCAACCACTT-GAACC
32308092 TCTTTTTCAA
Statistics
Matches: 71, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
42 66 0.93
43 5 0.07
ACGTcount: A:0.42, C:0.23, G:0.11, T:0.24
Consensus pattern (42 bp):
ATATCCAATGGTAAACCAACCACTTGAACCAAATGTTTTAAA
Found at i:32342483 original size:32 final size:32
Alignment explanation
Indices: 32342422--32342489 Score: 102
Period size: 32 Copynumber: 2.1 Consensus size: 32
32342412 CATATCTAAC
*
32342422 CATGCTTGCTAAAAAATTACTCCTTTTTGCCA
1 CATGCTTGCTAAAAAATTACTCCTCTTTGCCA
*
32342454 CATGCTTTGCTCAAAAATTACT-CTCTTTGCCA
1 CATGC-TTGCTAAAAAATTACTCCTCTTTGCCA
32342486 CATG
1 CATG
32342490 TATCTCTTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 18 0.55
33 15 0.45
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.37
Consensus pattern (32 bp):
CATGCTTGCTAAAAAATTACTCCTCTTTGCCA
Found at i:32343862 original size:135 final size:135
Alignment explanation
Indices: 32343623--32343882 Score: 351
Period size: 135 Copynumber: 1.9 Consensus size: 135
32343613 CATAGTTCAC
* * ** *** *
32343623 TCATTTTGGTCACTCCTATTAAAATCTCTTATGGAAATCTGACATGACATTTTTTGACATGTAAC
1 TCATTTTGATCACTCATATTAAAATCTCCAACAAAAATCTGACATGACATTTTTTGACACGTAAC
* * *
32343688 CCAATCATTAGATGCCACATGGCACAATTTATCATGTCATAAGTGTTGCATACCACTTTACTTAG
66 CCAATCATTAGATGCCACATAGCACAATTTATCACGTCATAAATGTTGCATACCACTTTACTTAG
32343753 TTTGT
131 TTTGT
* **
32343758 TCATTTTGATCACTCATATTAAAATCTCCAACAAAAATTTGACATGACATTTTTTGATGCGTAGA
1 TCATTTTGATCACTCATATTAAAATCTCCAACAAAAATCTGACATGACATTTTTTGACACGTA-A
* * *
32343823 -TCAATCCTTGGATGCCACATAGCACAATTTATCACGTCATAAATGTTGCATACCACTTTA
65 CCCAATCATTAGATGCCACATAGCACAATTTATCACGTCATAAATGTTGCATACCACTTTA
32343883 AAAGACTAAA
Statistics
Matches: 107, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
135 106 0.99
136 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.36
Consensus pattern (135 bp):
TCATTTTGATCACTCATATTAAAATCTCCAACAAAAATCTGACATGACATTTTTTGACACGTAAC
CCAATCATTAGATGCCACATAGCACAATTTATCACGTCATAAATGTTGCATACCACTTTACTTAG
TTTGT
Found at i:32354748 original size:19 final size:18
Alignment explanation
Indices: 32354726--32354765 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
32354716 TGAATAAAAC
32354726 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
*
32354745 TTATCTACCTTAATAAAT
1 TTATCTACCTAAATAAAT
32354763 TTA
1 TTA
32354766 AAATATATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.40, C:0.15, G:0.03, T:0.42
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:32365914 original size:27 final size:27
Alignment explanation
Indices: 32365882--32365942 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
32365872 AGCACATAAG
*
32365882 TTTCAAACGATATATATTTGAAAACTT
1 TTTCAAACCATATATATTTGAAAACTT
32365909 TTTCAAACCATATATATTTGAAAACTT
1 TTTCAAACCATATATATTTGAAAACTT
32365936 TTTCAAA
1 TTTCAAA
32365943 ACAAAATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.41, C:0.13, G:0.05, T:0.41
Consensus pattern (27 bp):
TTTCAAACCATATATATTTGAAAACTT
Found at i:32370047 original size:66 final size:66
Alignment explanation
Indices: 32369939--32370137 Score: 258
Period size: 66 Copynumber: 3.0 Consensus size: 66
32369929 GGTCATCCTC
* * * **
32369939 CTCCTTGTTCTTCTCTATTTTTT-ATATACTCCTCTCAATTTAATAACCCCTTTTTGGGGTCTTG
1 CTCCTTGTTCTGCTCTATTTTTTAATGTCCTCCTCTTGATTTAATAACCCCTTTTTGGGGTCTTG
32370003 T
66 T
* * *
32370004 CTCCTTGTTCTGCTTTGTTTTTTAATGTCCTCCTCTTGATTTAATAACCCCTTTTGGGGGTCTTG
1 CTCCTTGTTCTGCTCTATTTTTTAATGTCCTCCTCTTGATTTAATAACCCCTTTTTGGGGTCTTG
*
32370069 C
66 T
* * * *
32370070 CTCTTTGTTCTGCTCTATTTTCTAATGTCCTCCTCTTGGTTTAATAATCCC-TTTTGGGGTCCTT
1 CTCCTTGTTCTGCTCTATTTTTTAATGTCCTCCTCTTGATTTAATAACCCCTTTTTGGGGT-CTT
32370134 GT
65 GT
32370136 CT
1 CT
32370138 GAGCTTTCAT
Statistics
Matches: 115, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
65 28 0.24
66 87 0.76
ACGTcount: A:0.12, C:0.25, G:0.14, T:0.50
Consensus pattern (66 bp):
CTCCTTGTTCTGCTCTATTTTTTAATGTCCTCCTCTTGATTTAATAACCCCTTTTTGGGGTCTTG
T
Found at i:32370907 original size:5 final size:5
Alignment explanation
Indices: 32370897--32370976 Score: 151
Period size: 5 Copynumber: 16.0 Consensus size: 5
32370887 TATTAGCACA
32370897 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC ATATC
*
32370947 ATAGC ATATC ATATC ATATC ATATC ATATC
1 ATATC ATATC ATATC ATATC ATATC ATATC
32370977 TTTCCTTATT
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 73 1.00
ACGTcount: A:0.40, C:0.20, G:0.01, T:0.39
Consensus pattern (5 bp):
ATATC
Found at i:32376692 original size:31 final size:31
Alignment explanation
Indices: 32376657--32376724 Score: 73
Period size: 31 Copynumber: 2.2 Consensus size: 31
32376647 TACAAAATGA
** *
32376657 TCATTGAACTATTTGAAAGTTTGCATTTAAG
1 TCATTGAACTATTCAAAAGTTTGCATTCAAG
* * **
32376688 TCATTCAATTATTCAAAAGTTTTTATTCAAG
1 TCATTGAACTATTCAAAAGTTTGCATTCAAG
32376719 TCATTG
1 TCATTG
32376725 GGTTGTTAAG
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (31 bp):
TCATTGAACTATTCAAAAGTTTGCATTCAAG
Found at i:32385418 original size:73 final size:73
Alignment explanation
Indices: 32385301--32385448 Score: 244
Period size: 73 Copynumber: 2.0 Consensus size: 73
32385291 TAAAAAGATG
*
32385301 AAGCTATTTTTTACATGCATATATATATACACATCCATCCTTTTTAAGTATTCC-CGACTTTCAT
1 AAGCTAATTTTTACATGCATATATATATACACATCCATCCTTTTTAAGTA-TCCTCGACTTTCAT
32385365 TTGTATTAA
65 TTGTATTAA
* * *
32385374 AAGCTAATTTTTACATGCATGTATATATACACATCCATCTTTTTTAAGTATCCTCGACTTTCCTT
1 AAGCTAATTTTTACATGCATATATATATACACATCCATCCTTTTTAAGTATCCTCGACTTTCATT
32385439 TGTATTAA
66 TGTATTAA
32385447 AA
1 AA
32385449 ATAAATATTT
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
72 3 0.04
73 67 0.96
ACGTcount: A:0.30, C:0.19, G:0.07, T:0.43
Consensus pattern (73 bp):
AAGCTAATTTTTACATGCATATATATATACACATCCATCCTTTTTAAGTATCCTCGACTTTCATT
TGTATTAA
Found at i:32385547 original size:14 final size:15
Alignment explanation
Indices: 32385528--32385556 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32385518 GTGAACTAGT
32385528 AAAAAGAGA-AGAAA
1 AAAAAGAGATAGAAA
32385542 AAAAAGAGATAGAAA
1 AAAAAGAGATAGAAA
32385557 TATGAGTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (15 bp):
AAAAAGAGATAGAAA
Found at i:32389262 original size:63 final size:63
Alignment explanation
Indices: 32389187--32389523 Score: 187
Period size: 63 Copynumber: 5.2 Consensus size: 63
32389177 AGATTGTACA
* *
32389187 TGATAGTAAATCAATGAACTTAGGTTGTGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
1 TGATATTAAATCAATGAACTTAGGTTATGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
** ** * * * * * * * * * *
32389250 TGACCTTAAATCAGCGAGTTATTTGAAGTAACGATAGTAAATCAACTA-ACTTAGAGAATAT-TA
1 TGATATTAAATCAATGA---ACTT-AGGTTATGATCGTAAATCAGCGAGCCTTA-ATAATATCAA
*
32389313 TTCA
61 TT-G
* * *
32389317 TGATAGTAAATCAATGAACTTAGGTTTTGATCGTAAATCAGCGAGCCTTAATAATATCAACTG
1 TGATATTAAATCAATGAACTTAGGTTATGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
* * * * * * * * * * **
32389380 TGATATTAAATCAA-CAAGCTATTTGGAGTAGTGATAGTAAATTAACTA-ACTTAGAAAAGATTG
1 TGATATTAAATCAATGAA-C--TTAGG-TTA-TGATCGTAAATCAGCGAGCCTTA-ATAATATCA
* *
32389443 TTTA
60 ATTG
* * * * *
32389447 TGATAGTAAATCAATGAACTTAGGTTGTAATCGTAAATCAGTGAGCCTTAATAATATCAACTG
1 TGATATTAAATCAATGAACTTAGGTTATGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
32389510 TGATATTAAATCAA
1 TGATATTAAATCAA
32389524 CAAGCTATTT
Statistics
Matches: 186, Mismatches: 72, Indels: 32
0.64 0.25 0.11
Matches are distributed among these distances:
62 2 0.01
63 78 0.42
64 14 0.08
65 8 0.04
66 15 0.08
67 67 0.36
68 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (63 bp):
TGATATTAAATCAATGAACTTAGGTTATGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
Found at i:32389650 original size:390 final size:390
Alignment explanation
Indices: 32388919--32389652 Score: 1010
Period size: 390 Copynumber: 1.9 Consensus size: 390
32388909 CTCAGGAAGG
* * * *
32388919 ATTATTCATGATTGTAAATAAATGAACTTCGGCTGTTATCGTAAATTAGTGAGCCTTAATAATAT
1 ATTATTCATGATAGTAAATAAATGAACTTAGGCTGTTATCGTAAATCAGCGAGCCTTAATAATAT
* ** * *
32388984 CAGCTATGATATTAAATCTATGAATTGTTTGAAGTAGCAATAGTAAATCAACTAACTTAAAGAAG
66 CAACTATGATATTAAATCTAACAACTATTTGAAGTAGCAATAGTAAATCAACTAACTTAAAGAAG
* * *
32389049 ATTGTTCATGATATTAAATCAATGAATTTAGGCCGTGATCGTAAATCAACGAGCATTAATAATAT
131 ATTGTTCATGATAGTAAATCAATGAACTTAGGCCGTAATCGTAAATCAACGAGCATTAATAATAT
* *** * * * *
32389114 CAGCTGTGATATTAAACTAGTGAGCTGTTTGGAGTAGCGATAATAAATCAGCTAACTCAGAGAAG
196 CAACTGTGATATTAAACTAACAAGCTATTTGGAGTAGAGATAATAAATCAACTAACTCAGAAAAG
* * *
32389179 ATTGTACATGATAGTAAATCAATGAACTTAGGTTGTGATCGTAAATCAGCGAGCCTTAATAATAT
261 ATTGTACATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAATCAACGAGCCTTAATAATAT
*
32389244 CAATTGTGACCTTAAATCAGCGAGTTATTTGAAGTAACGATAGTAAATCAACTAACTTAGAGAAT
326 CAATTATGACCTTAAATCAGCGAGTTATTTGAAGTAACGATAGTAAATCAACTAACTTAGAGAAT
* *
32389309 ATTATTCATGATAGTAAATCAATGAACTTAGG-TTTTGATCGTAAATCAGCGAGCCTTAATAATA
1 ATTATTCATGATAGTAAATAAATGAACTTAGGCTGTT-ATCGTAAATCAGCGAGCCTTAATAATA
* * ** *
32389373 TCAACTGTGATATTAAATC-AACAAGCTATTTGGAGTAGTGATAGTAAATTAACTAACTTAGAA-
65 TCAACTATGATATTAAATCTAACAA-CTATTTGAAGTAGCAATAGTAAATCAACTAACTTA-AAG
* ** ** *
32389436 AAGATTGTTTATGATAGTAAATCAATGAACTTAGGTTGTAATCGTAAATCAGTGAGCCTTAATAA
128 AAGATTGTTCATGATAGTAAATCAATGAACTTAGGCCGTAATCGTAAATCAACGAGCATTAATAA
* *
32389501 TATCAACTGTGATATTAAA-TCAACAAGCTATTTGGAGTAGAGATAGTAAATCAACTAACTTAGA
193 TATCAACTGTGATATTAAACT-AACAAGCTATTTGGAGTAGAGATAATAAATCAACTAACTCAGA
* *
32389565 AAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAATTAACGAGCCTTAATA
257 AAAGATTGTACATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAATCAACGAGCCTTAATA
*
32389630 ATATC-ATCTATGATCTTAAATCA
322 ATATCAAT-TATGACCTTAAATCA
32389653 ACAAGTTGTT
Statistics
Matches: 297, Mismatches: 42, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
389 9 0.03
390 286 0.96
391 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (390 bp):
ATTATTCATGATAGTAAATAAATGAACTTAGGCTGTTATCGTAAATCAGCGAGCCTTAATAATAT
CAACTATGATATTAAATCTAACAACTATTTGAAGTAGCAATAGTAAATCAACTAACTTAAAGAAG
ATTGTTCATGATAGTAAATCAATGAACTTAGGCCGTAATCGTAAATCAACGAGCATTAATAATAT
CAACTGTGATATTAAACTAACAAGCTATTTGGAGTAGAGATAATAAATCAACTAACTCAGAAAAG
ATTGTACATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAATCAACGAGCCTTAATAATAT
CAATTATGACCTTAAATCAGCGAGTTATTTGAAGTAACGATAGTAAATCAACTAACTTAGAGAAT
Found at i:32389654 original size:130 final size:130
Alignment explanation
Indices: 32388900--32389657 Score: 907
Period size: 130 Copynumber: 5.8 Consensus size: 130
32388890 TATTATCATG
* * * * * * * *
32388900 AATCAAC-AACTCAGGAAGGATTATTCATGATTGTAAATAAATGAACTTCGGCTGTTATCGTAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
* * * * ** * * *
32388964 TTAGTGAGCCTTAATAATATCAGCTATGATATTAAATCTATGAA-TTGTTTGAAGTAGCA-ATAG
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATC-AACAAGCTATTTGGAGTAG-AGATAG
32389027 TA
129 TA
* * *
32389029 AATCAACTAACTTA-AAGAAGATTGTTCATGATATTAAATCAATGAATTTAGGCCGTGATCGTAA
1 AATCAACTAACTTAGAA-AAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAA
* * * *** * * *
32389093 ATCAACGAGCATTAATAATATCAGCTGTGATATTAAA-CTAGTGAGCTGTTTGGAGTAGCGATAA
65 ATCAGCGAGCCTTAATAATATCAACTGTGATATTAAATC-AACAAGCTATTTGGAGTAGAGATAG
32389157 TA
129 TA
* * * * *
32389159 AATCAGCTAACTCAGAGAAGATTGTACATGATAGTAAATCAATGAACTTAGGTTGTGATCGTAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
* ** * * * *
32389224 TCAGCGAGCCTTAATAATATCAATTGTGACCTTAAATCAGCGAGTTATTTGAAGTA-ACGATAGT
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGA-GATAGT
32389288 A
130 A
* * * * *
32389289 AATCAACTAACTTAGAGAATATTATTCATGATAGTAAATCAATGAACTTAGGTTTTGATCGTAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
*
32389354 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGTGATAGTA
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGAGATAGTA
* * * *
32389419 AATTAACTAACTTAGAAAAGATTGTTTATGATAGTAAATCAATGAACTTAGGTTGTAATCGTAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
*
32389484 TCAGTGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGAGATAGTA
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGAGATAGTA
*
32389549 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
* * * * *
32389614 TTAACGAGCCTTAATAATATCATCTATGATCTTAAATCAACAAG
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAG
32389658 TTGTTTTACA
Statistics
Matches: 544, Mismatches: 77, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
129 12 0.02
130 530 0.97
131 2 0.00
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (130 bp):
AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGAGATAGTA
Found at i:32391331 original size:14 final size:15
Alignment explanation
Indices: 32391312--32391340 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
32391302 GTGAACTAGT
32391312 AAAAAGAGA-AGAAA
1 AAAAAGAGATAGAAA
32391326 AAAAAGAGATAGAAA
1 AAAAAGAGATAGAAA
32391341 TATGAGTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (15 bp):
AAAAAGAGATAGAAA
Found at i:32395046 original size:63 final size:63
Alignment explanation
Indices: 32394971--32395307 Score: 187
Period size: 63 Copynumber: 5.2 Consensus size: 63
32394961 AGATTGTACA
* *
32394971 TGATAGTAAATCAATGAACTTAGGTTGTGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
1 TGATATTAAATCAATGAACTTAGGTTATGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
** ** * * * * * * * * * *
32395034 TGACCTTAAATCAGCGAGTTATTTGAAGTAACGATAGTAAATCAACTA-ACTTAGAGAATAT-TA
1 TGATATTAAATCAATGA---ACTT-AGGTTATGATCGTAAATCAGCGAGCCTTA-ATAATATCAA
*
32395097 TTCA
61 TT-G
* * *
32395101 TGATAGTAAATCAATGAACTTAGGTTTTGATCGTAAATCAGCGAGCCTTAATAATATCAACTG
1 TGATATTAAATCAATGAACTTAGGTTATGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
* * * * * * * * * * **
32395164 TGATATTAAATCAA-CAAGCTATTTGGAGTAGTGATAGTAAATTAACTA-ACTTAGAAAAGATTG
1 TGATATTAAATCAATGAA-C--TTAGG-TTA-TGATCGTAAATCAGCGAGCCTTA-ATAATATCA
* *
32395227 TTTA
60 ATTG
* * * * *
32395231 TGATAGTAAATCAATGAACTTAGGTTGTAATCGTAAATCAGTGAGCCTTAATAATATCAACTG
1 TGATATTAAATCAATGAACTTAGGTTATGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
32395294 TGATATTAAATCAA
1 TGATATTAAATCAA
32395308 CAAGCTATTT
Statistics
Matches: 186, Mismatches: 72, Indels: 32
0.64 0.25 0.11
Matches are distributed among these distances:
62 2 0.01
63 78 0.42
64 14 0.08
65 8 0.04
66 15 0.08
67 67 0.36
68 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (63 bp):
TGATATTAAATCAATGAACTTAGGTTATGATCGTAAATCAGCGAGCCTTAATAATATCAATTG
Found at i:32395434 original size:390 final size:390
Alignment explanation
Indices: 32394703--32395436 Score: 1010
Period size: 390 Copynumber: 1.9 Consensus size: 390
32394693 CTCAGGAAGG
* * * *
32394703 ATTATTCATGATTGTAAATAAATGAACTTCGGCTGTTATCGTAAATTAGTGAGCCTTAATAATAT
1 ATTATTCATGATAGTAAATAAATGAACTTAGGCTGTTATCGTAAATCAGCGAGCCTTAATAATAT
* ** * *
32394768 CAGCTATGATATTAAATCTATGAATTGTTTGAAGTAGCAATAGTAAATCAACTAACTTAAAGAAG
66 CAACTATGATATTAAATCTAACAACTATTTGAAGTAGCAATAGTAAATCAACTAACTTAAAGAAG
* * *
32394833 ATTGTTCATGATATTAAATCAATGAATTTAGGCCGTGATCGTAAATCAACGAGCATTAATAATAT
131 ATTGTTCATGATAGTAAATCAATGAACTTAGGCCGTAATCGTAAATCAACGAGCATTAATAATAT
* *** * * * *
32394898 CAGCTGTGATATTAAACTAGTGAGCTGTTTGGAGTAGCGATAATAAATCAGCTAACTCAGAGAAG
196 CAACTGTGATATTAAACTAACAAGCTATTTGGAGTAGAGATAATAAATCAACTAACTCAGAAAAG
* * *
32394963 ATTGTACATGATAGTAAATCAATGAACTTAGGTTGTGATCGTAAATCAGCGAGCCTTAATAATAT
261 ATTGTACATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAATCAACGAGCCTTAATAATAT
*
32395028 CAATTGTGACCTTAAATCAGCGAGTTATTTGAAGTAACGATAGTAAATCAACTAACTTAGAGAAT
326 CAATTATGACCTTAAATCAGCGAGTTATTTGAAGTAACGATAGTAAATCAACTAACTTAGAGAAT
* *
32395093 ATTATTCATGATAGTAAATCAATGAACTTAGG-TTTTGATCGTAAATCAGCGAGCCTTAATAATA
1 ATTATTCATGATAGTAAATAAATGAACTTAGGCTGTT-ATCGTAAATCAGCGAGCCTTAATAATA
* * ** *
32395157 TCAACTGTGATATTAAATC-AACAAGCTATTTGGAGTAGTGATAGTAAATTAACTAACTTAGAA-
65 TCAACTATGATATTAAATCTAACAA-CTATTTGAAGTAGCAATAGTAAATCAACTAACTTA-AAG
* ** ** *
32395220 AAGATTGTTTATGATAGTAAATCAATGAACTTAGGTTGTAATCGTAAATCAGTGAGCCTTAATAA
128 AAGATTGTTCATGATAGTAAATCAATGAACTTAGGCCGTAATCGTAAATCAACGAGCATTAATAA
* *
32395285 TATCAACTGTGATATTAAA-TCAACAAGCTATTTGGAGTAGAGATAGTAAATCAACTAACTTAGA
193 TATCAACTGTGATATTAAACT-AACAAGCTATTTGGAGTAGAGATAATAAATCAACTAACTCAGA
* *
32395349 AAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAATTAACGAGCCTTAATA
257 AAAGATTGTACATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAATCAACGAGCCTTAATA
*
32395414 ATATC-ATCTATGATCTTAAATCA
322 ATATCAAT-TATGACCTTAAATCA
32395437 ACAAGTTGTT
Statistics
Matches: 297, Mismatches: 42, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
389 9 0.03
390 286 0.96
391 2 0.01
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.32
Consensus pattern (390 bp):
ATTATTCATGATAGTAAATAAATGAACTTAGGCTGTTATCGTAAATCAGCGAGCCTTAATAATAT
CAACTATGATATTAAATCTAACAACTATTTGAAGTAGCAATAGTAAATCAACTAACTTAAAGAAG
ATTGTTCATGATAGTAAATCAATGAACTTAGGCCGTAATCGTAAATCAACGAGCATTAATAATAT
CAACTGTGATATTAAACTAACAAGCTATTTGGAGTAGAGATAATAAATCAACTAACTCAGAAAAG
ATTGTACATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAATCAACGAGCCTTAATAATAT
CAATTATGACCTTAAATCAGCGAGTTATTTGAAGTAACGATAGTAAATCAACTAACTTAGAGAAT
Found at i:32395438 original size:130 final size:130
Alignment explanation
Indices: 32394684--32395441 Score: 907
Period size: 130 Copynumber: 5.8 Consensus size: 130
32394674 TATTATCATG
* * * * * * * *
32394684 AATCAAC-AACTCAGGAAGGATTATTCATGATTGTAAATAAATGAACTTCGGCTGTTATCGTAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
* * * * ** * * *
32394748 TTAGTGAGCCTTAATAATATCAGCTATGATATTAAATCTATGAA-TTGTTTGAAGTAGCA-ATAG
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATC-AACAAGCTATTTGGAGTAG-AGATAG
32394811 TA
129 TA
* * *
32394813 AATCAACTAACTTA-AAGAAGATTGTTCATGATATTAAATCAATGAATTTAGGCCGTGATCGTAA
1 AATCAACTAACTTAGAA-AAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAA
* * * *** * * *
32394877 ATCAACGAGCATTAATAATATCAGCTGTGATATTAAA-CTAGTGAGCTGTTTGGAGTAGCGATAA
65 ATCAGCGAGCCTTAATAATATCAACTGTGATATTAAATC-AACAAGCTATTTGGAGTAGAGATAG
32394941 TA
129 TA
* * * * *
32394943 AATCAGCTAACTCAGAGAAGATTGTACATGATAGTAAATCAATGAACTTAGGTTGTGATCGTAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
* ** * * * *
32395008 TCAGCGAGCCTTAATAATATCAATTGTGACCTTAAATCAGCGAGTTATTTGAAGTA-ACGATAGT
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGA-GATAGT
32395072 A
130 A
* * * * *
32395073 AATCAACTAACTTAGAGAATATTATTCATGATAGTAAATCAATGAACTTAGGTTTTGATCGTAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
*
32395138 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGTGATAGTA
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGAGATAGTA
* * * *
32395203 AATTAACTAACTTAGAAAAGATTGTTTATGATAGTAAATCAATGAACTTAGGTTGTAATCGTAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
*
32395268 TCAGTGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGAGATAGTA
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGAGATAGTA
*
32395333 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCATAAA
1 AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
* * * * *
32395398 TTAACGAGCCTTAATAATATCATCTATGATCTTAAATCAACAAG
66 TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAG
32395442 TTGTTTTACA
Statistics
Matches: 544, Mismatches: 77, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
129 12 0.02
130 530 0.97
131 2 0.00
ACGTcount: A:0.39, C:0.12, G:0.17, T:0.31
Consensus pattern (130 bp):
AATCAACTAACTTAGAAAAGATTGTTCATGATAGTAAATCAATGAACTTAGGCTGTGATCGTAAA
TCAGCGAGCCTTAATAATATCAACTGTGATATTAAATCAACAAGCTATTTGGAGTAGAGATAGTA
Found at i:32402551 original size:20 final size:20
Alignment explanation
Indices: 32402518--32402564 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
32402508 GGGGCAATTG
32402518 AATTAATTTGATTAAAATCA
1 AATTAATTTGATTAAAATCA
*
32402538 AATTGAATTT-ATTAGAATCA
1 AATT-AATTTGATTAAAATCA
32402558 AA-TAATT
1 AATTAATT
32402565 CAAGATATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 4 0.16
19 1 0.04
20 15 0.60
21 5 0.20
ACGTcount: A:0.49, C:0.04, G:0.06, T:0.40
Consensus pattern (20 bp):
AATTAATTTGATTAAAATCA
Found at i:32402560 original size:25 final size:25
Alignment explanation
Indices: 32402513--32402560 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
32402503 TTAAAGGGGC
* *
32402513 AATTGAATTAATTTGATTAAAATCA
1 AATTGAATTAATTAGAATAAAATCA
* *
32402538 AATTGAATTTATTAGAATCAAAT
1 AATTGAATTAATTAGAATAAAAT
32402561 AATTCAAGAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40
Consensus pattern (25 bp):
AATTGAATTAATTAGAATAAAATCA
Found at i:32404153 original size:5 final size:6
Alignment explanation
Indices: 32404138--32404172 Score: 52
Period size: 6 Copynumber: 5.5 Consensus size: 6
32404128 AAGTTTATTC
32404138 TTTTTA TTTTTA TTTTTA TTTTTAA GTTTTTA TTT
1 TTTTTA TTTTTA TTTTTA TTTTT-A -TTTTTA TTT
32404173 CATTAAATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
6 20 0.74
7 2 0.07
8 5 0.19
ACGTcount: A:0.17, C:0.00, G:0.03, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:32405398 original size:27 final size:26
Alignment explanation
Indices: 32405362--32405413 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
32405352 AAATCATTTG
32405362 ATATGTTTTT-CTTTTTGTATTTATAT
1 ATATGTTTTTGCTTTTT-TATTTATAT
*
32405388 ATATGTGTTTTGGTTTTTTATTTATA
1 ATATGT-TTTTGCTTTTTTATTTATA
32405414 ATTTATTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 6 0.26
27 12 0.52
28 5 0.22
ACGTcount: A:0.19, C:0.02, G:0.12, T:0.67
Consensus pattern (26 bp):
ATATGTTTTTGCTTTTTTATTTATAT
Found at i:32407054 original size:22 final size:22
Alignment explanation
Indices: 32407014--32407064 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
32407004 TTATAAAATA
*
32407014 AAAATAAAAAATGTTTCTTCAT
1 AAAATAAAAAATGTATCTTCAT
* *
32407036 CAAATAAAAAGAT-TATCTTGAT
1 AAAATAAAAA-ATGTATCTTCAT
32407058 AAAATAA
1 AAAATAA
32407065 TTTAAAAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 22 0.92
23 2 0.08
ACGTcount: A:0.55, C:0.08, G:0.06, T:0.31
Consensus pattern (22 bp):
AAAATAAAAAATGTATCTTCAT
Found at i:32408280 original size:79 final size:80
Alignment explanation
Indices: 32408118--32408280 Score: 211
Period size: 80 Copynumber: 2.0 Consensus size: 80
32408108 AATTAACTTT
* * * * * * *
32408118 TTAATTAAAATAGTGAAGAAATTATCACTTGTTTATAAAGTAAATGTGAGACATGAGAGTGTTTT
1 TTAATAAAAATAGTAAAGAAATTAACACTTATTTATAAAGTAAATGTGAGACATAAGAGTGCTCT
*
32408183 GTAGTCAATGTGAGA
66 CTAGTCAATGTGAGA
** *
32408198 TTAATAAAAATAGTAAAGAAATTAACACTTATTTATAGGGTAAGTGTGAG-CATAAGAGTGCTCT
1 TTAATAAAAATAGTAAAGAAATTAACACTTATTTATAAAGTAAATGTGAGACATAAGAGTGCTCT
*
32408262 CTAGTCAATGTGGGA
66 CTAGTCAATGTGAGA
32408277 TTAA
1 TTAA
32408281 AATTAAAATT
Statistics
Matches: 71, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
79 28 0.39
80 43 0.61
ACGTcount: A:0.39, C:0.07, G:0.21, T:0.33
Consensus pattern (80 bp):
TTAATAAAAATAGTAAAGAAATTAACACTTATTTATAAAGTAAATGTGAGACATAAGAGTGCTCT
CTAGTCAATGTGAGA
Found at i:32408517 original size:95 final size:93
Alignment explanation
Indices: 32408360--32408603 Score: 272
Period size: 95 Copynumber: 2.6 Consensus size: 93
32408350 CTAGTTAACC
* * * * * * * *
32408360 TGAGATTAATATTAAATTTTTAATGAAAATAGTAAACAAATATCACTTATTTATAAGGTAAATGT
1 TGAGATTAAAACTAACTTTTTAATGAAAATAGTGAAGAATTGTCACTTATTTATAAGGTAAATAT
* * *
32408425 GAGATATGAGGGTGTTCCCTAGTCAAAG
66 GAGACATGAGAGTGTTCCCTACTCAAAG
* *
32408453 TGAGATTAAAACTAATTTTTTTAATGAAAATAGTGAAGAAGTTGTCACTTATTTATAAGTTAAAT
1 TGAGATTAAAACTAA-CTTTTTAATGAAAATAGTGAAGAA-TTGTCACTTATTTATAAGGTAAAT
* *
32408518 ATGAGACATGAGAGTGTTCTCTACTCAACG
64 ATGAGACATGAGAGTGTTCCCTACTCAAAG
* * * * * *
32408548 TGAGATTAAGATTAACTTTTAAATAAAAATAATGAAGAAATTGACACTTATTTATA
1 TGAGATTAAAACTAACTTTTTAATGAAAATAGTGAAG-AATTGTCACTTATTTATA
32408604 GGATAAGTGT
Statistics
Matches: 127, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
93 13 0.10
94 54 0.43
95 60 0.47
ACGTcount: A:0.41, C:0.08, G:0.16, T:0.35
Consensus pattern (93 bp):
TGAGATTAAAACTAACTTTTTAATGAAAATAGTGAAGAATTGTCACTTATTTATAAGGTAAATAT
GAGACATGAGAGTGTTCCCTACTCAAAG
Found at i:32408844 original size:94 final size:92
Alignment explanation
Indices: 32408686--32408918 Score: 238
Period size: 94 Copynumber: 2.5 Consensus size: 92
32408676 TATTTTGTAA
* * **
32408686 TCAATGTGAGATTAAAATTAACTTTTTTTTTATGAAAATAGGGAAGAAATTGTCACTTACTTATA
1 TCAATGTGAGATTAAAATTAAC----TTTTAATGAAAATAGTGAAGAAATTAACACTTACTTATA
* * *
32408751 AGTTAAATATGAG-ATTTGAGAGTGTTCTCTAG
62 AGGTAAATATGAGCA--TGAGAGTGTTCCCTAC
* * *
32408783 TCAATATGAGATTAAAATTAACCTTTTAATGAAAATAATGAAGAAATTAACACTTATTTATAAGG
1 TCAATGTGAGATTAAAATTAA-CTTTTAATGAAAATAGTGAAGAAATTAACACTTACTTATAAGG
* *
32408848 TAAGTGTGAGCATGAGAGTGTTCCCTAC
65 TAAATATGAGCATGAGAGTGTTCCCTAC
* * *
32408876 T-AATGTGGGATTAAACTTAA-TTTCTCATGAAAATAGTGAAGAA
1 TCAATGTGAGATTAAAATTAACTTT-TAATGAAAATAGTGAAGAA
32408919 GTGAACTATG
Statistics
Matches: 116, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
90 3 0.03
91 17 0.15
92 16 0.14
93 15 0.13
94 43 0.37
95 1 0.01
97 20 0.17
98 1 0.01
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (92 bp):
TCAATGTGAGATTAAAATTAACTTTTAATGAAAATAGTGAAGAAATTAACACTTACTTATAAGGT
AAATATGAGCATGAGAGTGTTCCCTAC
Done.