Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 110 of 182
Found at i:33316141 original size:25 final size:25
Alignment explanation
Indices: 33316107--33316174 Score: 109
Period size: 25 Copynumber: 2.6 Consensus size: 25
33316097 ATTATATATT
33316107 ATATATATATATTATTTTTAATCAA
1 ATATATATATATTATTTTTAATCAA
*
33316132 ATATATATATTTTATTTTTAATCAA
1 ATATATATATATTATTTTTAATCAA
33316157 ATATATTATATATATATT
1 ATATA-TATATAT-TATT
33316175 AGGTATATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
25 29 0.74
26 6 0.15
27 4 0.10
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (25 bp):
ATATATATATATTATTTTTAATCAA
Found at i:33317494 original size:27 final size:26
Alignment explanation
Indices: 33317451--33317524 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 26
33317441 GCACACCTTA
* *
33317451 GCTCTTTGTGAGTTTCCCGTTTAAAG
1 GCTCTTTGTGAGCTTCCCGATTAAAG
* *
33317477 GCTCTTTCATGAGCTTCCTGATTAAAG
1 GCTCTTT-GTGAGCTTCCCGATTAAAG
*
33317504 CCTCTTTGTGAGCTTCCCGAT
1 GCTCTTTGTGAGCTTCCCGAT
33317525 ATGGCTCTCT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 19 0.47
27 21 0.52
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.39
Consensus pattern (26 bp):
GCTCTTTGTGAGCTTCCCGATTAAAG
Found at i:33325312 original size:24 final size:25
Alignment explanation
Indices: 33325286--33325377 Score: 70
Period size: 24 Copynumber: 3.8 Consensus size: 25
33325276 TGGTTATCAA
33325286 GAGCTTTCCGTTAATGGCTCTTCA-
1 GAGCTTTCCGTTAATGGCTCTTCAT
** * * *
33325310 GAGCTGCCCATTATTGGCTC-GCAT
1 GAGCTTTCCGTTAATGGCTCTTCAT
33325334 GAGC-TTCCTGATT-ATGGCTCTT-AT
1 GAGCTTTCC-G-TTAATGGCTCTTCAT
33325358 GAG-TTTCCGTTATATGGCTC
1 GAGCTTTCCGTTA-ATGGCTC
33325378 GGGAGAGTGC
Statistics
Matches: 51, Mismatches: 10, Indels: 14
0.68 0.13 0.19
Matches are distributed among these distances:
22 2 0.04
23 5 0.10
24 42 0.82
25 2 0.04
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.37
Consensus pattern (25 bp):
GAGCTTTCCGTTAATGGCTCTTCAT
Found at i:33331291 original size:128 final size:128
Alignment explanation
Indices: 33331096--33331351 Score: 487
Period size: 128 Copynumber: 2.0 Consensus size: 128
33331086 AAGACAGGTG
33331096 AATACAAAATGCACAATTTAATTATAAACACATATTAATGACTAATATCACAACTATCATATGCG
1 AATACAAAATGCACAATTTAATTATAAACACATATTAATGACTAATATCACAACTATCATATGCG
33331161 AACCTTTTGAATTCATACATATCAGCACATTATTTCAA-ACTACATTCAATTTACACATGCTAT
66 AACCTTTTGAATTCATACATATCAGCACATTATTT-AATACTACATTCAATTTACACATGCTAT
33331224 AATACAAAATGCACAATTTAATTATAAACACATATTAATGACTAATATCACAACTATCATATGCG
1 AATACAAAATGCACAATTTAATTATAAACACATATTAATGACTAATATCACAACTATCATATGCG
*
33331289 AACCTTTTGAATTCATACATATTAGCACATTATTTAATACTACATTCAATTTACACATGCTAT
66 AACCTTTTGAATTCATACATATCAGCACATTATTTAATACTACATTCAATTTACACATGCTAT
33331352 CATATTTCAT
Statistics
Matches: 126, Mismatches: 1, Indels: 2
0.98 0.01 0.02
Matches are distributed among these distances:
127 2 0.02
128 124 0.98
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.34
Consensus pattern (128 bp):
AATACAAAATGCACAATTTAATTATAAACACATATTAATGACTAATATCACAACTATCATATGCG
AACCTTTTGAATTCATACATATCAGCACATTATTTAATACTACATTCAATTTACACATGCTAT
Found at i:33331872 original size:16 final size:16
Alignment explanation
Indices: 33331851--33331884 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
33331841 CCAATATTCA
* *
33331851 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
33331867 ATTATCACATTTACAC
1 ATTATCACATTTACAC
33331883 AT
1 AT
33331885 ATATATTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:33332493 original size:185 final size:185
Alignment explanation
Indices: 33332181--33332557 Score: 745
Period size: 185 Copynumber: 2.0 Consensus size: 185
33332171 TTCATATTGA
33332181 AAATTTTAATTTTTACTCAATATTTTCCTAAATTTCAATTTAGTCCCTAAACCGAGACTAATTTT
1 AAATTTTAATTTTTACTCAATATTTTCCTAAATTTCAATTTAGTCCCTAAACCGAGACTAATTTT
33332246 TATTCTTTATATTTAATTCTATATTTTCATACAAATTTCAAATTTCAATTTACTCCCTATTTTCA
66 TATTCTTTATATTTAATTCTATATTTTCATACAAATTTCAAATTTCAATTTACTCCCTATTTTCA
33332311 CTTAAACCCCTAAATTTCAAATTTTTCATAATTTAGTCCCTATTACTCAAAATTT
131 CTTAAACCCCTAAATTTCAAATTTTTCATAATTTAGTCCCTATTACTCAAAATTT
33332366 AAATTTTAATTTTTACTCAATATTTTCCTAAATTTCAATTTAGTCCCTAAACCGAGACTAATTTT
1 AAATTTTAATTTTTACTCAATATTTTCCTAAATTTCAATTTAGTCCCTAAACCGAGACTAATTTT
33332431 TATTCTTTATATTTAATTCTATATTTTCATACAAATTTCAAATTTCAATTTACTCCCTATTTTCA
66 TATTCTTTATATTTAATTCTATATTTTCATACAAATTTCAAATTTCAATTTACTCCCTATTTTCA
33332496 CTTAAACCCCTAAATTTCAAATTTTTCATAATTTAGTCCCTATTACTCAAAATTT
131 CTTAAACCCCTAAATTTCAAATTTTTCATAATTTAGTCCCTATTACTCAAAATTT
33332551 ACAATTT
1 A-AATTT
33332558 ATTCTACAAT
Statistics
Matches: 191, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
185 186 0.97
186 5 0.03
ACGTcount: A:0.33, C:0.18, G:0.02, T:0.46
Consensus pattern (185 bp):
AAATTTTAATTTTTACTCAATATTTTCCTAAATTTCAATTTAGTCCCTAAACCGAGACTAATTTT
TATTCTTTATATTTAATTCTATATTTTCATACAAATTTCAAATTTCAATTTACTCCCTATTTTCA
CTTAAACCCCTAAATTTCAAATTTTTCATAATTTAGTCCCTATTACTCAAAATTT
Found at i:33334393 original size:13 final size:13
Alignment explanation
Indices: 33334375--33334400 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
33334365 ATGATGTCAA
33334375 AATTAAAACACAT
1 AATTAAAACACAT
33334388 AATTAAAACACAT
1 AATTAAAACACAT
33334401 GTTAATGATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.15, G:0.00, T:0.23
Consensus pattern (13 bp):
AATTAAAACACAT
Found at i:33339631 original size:16 final size:16
Alignment explanation
Indices: 33339610--33339644 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
33339600 CAAATATCCA
* *
33339610 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
33339626 ATTATCACATTTACAC
1 ATTATCACATTTACAC
33339642 ATT
1 ATT
33339645 TATATTCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.43
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:33347955 original size:16 final size:16
Alignment explanation
Indices: 33347931--33347961 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33347921 CTTGGACTCA
*
33347931 AATCGAATCCAAGTCG
1 AATCAAATCCAAGTCG
33347947 AATCAAATCCAAGTC
1 AATCAAATCCAAGTC
33347962 AAAGAACAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.26, G:0.13, T:0.19
Consensus pattern (16 bp):
AATCAAATCCAAGTCG
Found at i:33352662 original size:87 final size:87
Alignment explanation
Indices: 33352511--33352675 Score: 215
Period size: 87 Copynumber: 1.9 Consensus size: 87
33352501 GGGTTCCCAA
* * * * * * *
33352511 TTGGCTGTGATCCTGCATGTGTTGTGGTCACACCATAGCTCTTACGAGTGTCCTAATATTTGGCT
1 TTGGCTGTGATCCTACATGTGTTGTGGACACACCACAGCTCTTACAAGCGTCCCAATATATGGCT
33352576 CTC-ACGAGCTTCCCGTTAATAT
66 CTCTA-GAGCTTCCCGTTAATAT
* * * *
33352598 TTGGTTGTGATCCTACATGTGTTGTGGACACACCGCAGCTCTTATAAGCGTCCCGATATATGGCT
1 TTGGCTGTGATCCTACATGTGTTGTGGACACACCACAGCTCTTACAAGCGTCCCAATATATGGCT
33352663 CTCTAGAGCTTCC
66 CTCTAGAGCTTCC
33352676 TATTATATGG
Statistics
Matches: 66, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
87 65 0.98
88 1 0.02
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (87 bp):
TTGGCTGTGATCCTACATGTGTTGTGGACACACCACAGCTCTTACAAGCGTCCCAATATATGGCT
CTCTAGAGCTTCCCGTTAATAT
Found at i:33352682 original size:25 final size:26
Alignment explanation
Indices: 33352654--33352731 Score: 81
Period size: 25 Copynumber: 3.1 Consensus size: 26
33352644 AGCGTCCCGA
33352654 TATATGGCTCTCTA-GAGCTTCCT-AT
1 TATATGGCTCT-TACGAGCTTCCTGAT
* *
33352679 TATATGGTTCTTACGAGCTTCTTGAT
1 TATATGGCTCTTACGAGCTTCCTGAT
* * *
33352705 AAT-TGGCTCTTATGAGCTTCCCGAT
1 TATATGGCTCTTACGAGCTTCCTGAT
33352730 TA
1 TA
33352732 ACGACTCTTC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
24 2 0.05
25 37 0.86
26 4 0.09
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.41
Consensus pattern (26 bp):
TATATGGCTCTTACGAGCTTCCTGAT
Found at i:33352817 original size:25 final size:25
Alignment explanation
Indices: 33352789--33352862 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
33352779 TACGGCTCTT
33352789 ATGAGCTTCCCATTA-TATAGCTCGA-
1 ATGAGCTTCCCATTACT-TAGCTC-AC
* * *
33352814 ATGACCTTCCCGTTACTTGGCTCAC
1 ATGAGCTTCCCATTACTTAGCTCAC
* *
33352839 ATGAGCTTCCCGTTACTTGGCTCA
1 ATGAGCTTCCCATTACTTAGCTCA
33352863 AGAGAGAGTT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.02
25 41 0.95
26 1 0.02
ACGTcount: A:0.20, C:0.30, G:0.18, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCATTACTTAGCTCAC
Found at i:33368633 original size:21 final size:21
Alignment explanation
Indices: 33368609--33368661 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
33368599 CATTGTTTCT
* *
33368609 AATCTCACCGCTACAGTATCC
1 AATCTCACCGCTACAATAACC
* *
33368630 AATCTCACCACTACAATAACT
1 AATCTCACCGCTACAATAACC
33368651 AATCTCACCGC
1 AATCTCACCGC
33368662 CACCGTTGTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.34, C:0.38, G:0.06, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:33372941 original size:41 final size:41
Alignment explanation
Indices: 33372884--33372961 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
33372874 TCAGATTCTC
*
33372884 ATATTTCGAATATTTTAGCTACACTCATCTTTTGTGACTCG
1 ATATTTCGAATATTTTACCTACACTCATCTTTTGTGACTCG
* * *
33372925 ATATTTTGGATATTTTACCTACACTTATCTTTTGTGA
1 ATATTTCGAATATTTTACCTACACTCATCTTTTGTGA
33372962 ACGTTTAAAC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.24, C:0.17, G:0.12, T:0.47
Consensus pattern (41 bp):
ATATTTCGAATATTTTACCTACACTCATCTTTTGTGACTCG
Found at i:33376995 original size:30 final size:31
Alignment explanation
Indices: 33376961--33377029 Score: 79
Period size: 30 Copynumber: 2.3 Consensus size: 31
33376951 GTCACCACTA
* *
33376961 ACCATTTTCT-GTTACAAACGTAACAGAGCT
1 ACCATTTTCTCATTACAAACATAACAGAGCT
* *
33376991 ACCATTTT-TCATTACAGACATAGCAGAGCT
1 ACCATTTTCTCATTACAAACATAACAGAGCT
*
33377021 GCCATTTTC
1 ACCATTTTC
33377030 CATCCCTCTA
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
29 1 0.03
30 31 0.97
ACGTcount: A:0.30, C:0.25, G:0.13, T:0.32
Consensus pattern (31 bp):
ACCATTTTCTCATTACAAACATAACAGAGCT
Found at i:33384055 original size:20 final size:20
Alignment explanation
Indices: 33384039--33384090 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 20
33384029 ATTGCACTTT
33384039 GGTGCCTCTATTTGCACTAC
1 GGTGCCTCTATTTGCACTAC
* *
33384059 AGTGCCTCTTTTTTGCACTAC
1 GGTGCCTC-TATTTGCACTAC
33384080 GGTGCCTCTAT
1 GGTGCCTCTAT
33384091 ATAGCGTTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 9 0.33
21 18 0.67
ACGTcount: A:0.13, C:0.29, G:0.19, T:0.38
Consensus pattern (20 bp):
GGTGCCTCTATTTGCACTAC
Found at i:33392701 original size:22 final size:22
Alignment explanation
Indices: 33392676--33392742 Score: 64
Period size: 25 Copynumber: 2.9 Consensus size: 22
33392666 GTGCTATACA
33392676 GAGAGCATAGATGTGCTAATCG
1 GAGAGCATAGATGTGCTAATCG
* *
33392698 GAGAGCACTA-ACGTGCTAATAATCT
1 GAGAGCA-TAGATGTGC---TAATCG
*
33392723 GAGAGCATTGATGTGCTAAT
1 GAGAGCATAGATGTGCTAAT
33392743 AATCAGAAAG
Statistics
Matches: 36, Mismatches: 4, Indels: 10
0.72 0.08 0.20
Matches are distributed among these distances:
22 16 0.44
23 2 0.06
24 1 0.03
25 17 0.47
ACGTcount: A:0.33, C:0.15, G:0.27, T:0.25
Consensus pattern (22 bp):
GAGAGCATAGATGTGCTAATCG
Found at i:33392726 original size:25 final size:25
Alignment explanation
Indices: 33392692--33392746 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
33392682 ATAGATGTGC
33392692 TAATCGGAGAGCACTAACGTGCTAA
1 TAATCGGAGAGCACTAACGTGCTAA
* * * *
33392717 TAATCTGAGAGCATTGATGTGCTAA
1 TAATCGGAGAGCACTAACGTGCTAA
33392742 TAATC
1 TAATC
33392747 AGAAAGAGCG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (25 bp):
TAATCGGAGAGCACTAACGTGCTAA
Found at i:33399784 original size:43 final size:43
Alignment explanation
Indices: 33399613--33399785 Score: 156
Period size: 43 Copynumber: 4.0 Consensus size: 43
33399603 ACCTAGGATT
* * * *
33399613 TCGATATGTGATTTCATGTAAGACCATGTTTGGGACGTTGGCA
1 TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
* * * *
33399656 TCGAT-TTGAGATTTACGTGTAAGACCATGTCTGGGACATTGGCA
1 TCGATATT-TGA-TTACATGTAAGACCACGTCTGGGACGTTGGCA
* * * * * *
33399700 TCG-TATATAATTTCGTGTAAGACC-CTGTCTAGGATAG-TGGCA
1 TCGATATTTGATTACATGTAAGACCAC-GTCTGGGA-CGTTGGCA
33399742 TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
33399785 T
1 T
33399786 TGTACAAGCT
Statistics
Matches: 102, Mismatches: 20, Indels: 16
0.74 0.14 0.12
Matches are distributed among these distances:
42 30 0.29
43 39 0.38
44 33 0.32
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (43 bp):
TCGATATTTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:33400466 original size:46 final size:46
Alignment explanation
Indices: 33400395--33400761 Score: 540
Period size: 46 Copynumber: 8.0 Consensus size: 46
33400385 TGTGATAACA
* * * *
33400395 AAATGTTGTCTATTTTTTAGTATATTATGTTGTCTGAATGTTGTTT
1 AAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
*
33400441 AAATGCTGTCCATTTTTGAGCATATTATGTTGTCCGAATGTTGTTT
1 AAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
*
33400487 AAATGTTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
1 AAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
* *
33400533 AAATGTTGTCCATTTTTTAGCATATTATGATGTCCGAATGTTGTTT
1 AAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
* * ** *
33400579 AAATGCTGTCCATTTTTGAGGATATTATACTGT-CTAATGTTGTTT
1 AAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
33400624 AAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
1 AAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
*
33400670 AAATGTTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
1 AAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
* * * *
33400716 AAATGCTATCCATTTTTGTA-CAAATCAATGATGTCCGAATGTTGTT
1 AAATGCTGTCCATTTTT-TAGCATAT-TATGTTGTCCGAATGTTGTT
33400762 ACTGCTGTTC
Statistics
Matches: 293, Mismatches: 25, Indels: 5
0.91 0.08 0.02
Matches are distributed among these distances:
45 40 0.14
46 233 0.80
47 20 0.07
ACGTcount: A:0.23, C:0.11, G:0.17, T:0.48
Consensus pattern (46 bp):
AAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTT
Found at i:33400493 original size:22 final size:22
Alignment explanation
Indices: 33400467--33400543 Score: 75
Period size: 22 Copynumber: 3.4 Consensus size: 22
33400457 TGAGCATATT
33400467 ATGTTGTCCGAATGTTGTTTAA
1 ATGTTGTCCGAATGTTGTTTAA
* * ** *
33400489 ATGTTGTCC-ATTTTTTAGCATATT
1 ATGTTGTCCGA-ATGTT-GTTTA-A
33400513 ATGTTGTCCGAATGTTGTTTAA
1 ATGTTGTCCGAATGTTGTTTAA
33400535 ATGTTGTCC
1 ATGTTGTCC
33400544 ATTTTTTAGC
Statistics
Matches: 41, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
21 1 0.02
22 21 0.51
23 6 0.15
24 12 0.29
25 1 0.02
ACGTcount: A:0.21, C:0.12, G:0.19, T:0.48
Consensus pattern (22 bp):
ATGTTGTCCGAATGTTGTTTAA
Found at i:33400769 original size:137 final size:138
Alignment explanation
Indices: 33400395--33400761 Score: 587
Period size: 137 Copynumber: 2.7 Consensus size: 138
33400385 TGTGATAACA
* * *
33400395 AAATGTTGTCTATTTTTTAGTATATTATGTTGTCTGAATGTTGTTTAAATGCTGTCCATTTTTGA
1 AAATGTTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTTAAATGCTGTCCATTTTTGA
* *
33400460 GCATATTATGTTGTCCGAATGTTGTTTAAATGTTGTCCATTTTTTAGCATATTATGTTGTCCGAA
66 GCATATTATGATGTCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAA
33400525 TGTTGTTT
131 TGTTGTTT
*
33400533 AAATGTTGTCCATTTTTTAGCATATTATGATGTCCGAATGTTGTTTAAATGCTGTCCATTTTTGA
1 AAATGTTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTTAAATGCTGTCCATTTTTGA
* *
33400598 GGATATTAT-ACTGT-CTAATGTTGTTTAAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGA
66 GCATATTATGA-TGTCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGA
33400661 ATGTTGTTT
130 ATGTTGTTT
*
33400670 AAATGTTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTTAAATGCTATCCATTTTTGT
1 AAATGTTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTTAAATGCTGTCCATTTTTG-
* *
33400735 A-CAAATCAATGATGTCCGAATGTTGTT
65 AGCATAT-TATGATGTCCGAATGTTGTT
33400762 ACTGCTGTTC
Statistics
Matches: 210, Mismatches: 14, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
137 121 0.58
138 78 0.37
139 11 0.05
ACGTcount: A:0.23, C:0.11, G:0.17, T:0.48
Consensus pattern (138 bp):
AAATGTTGTCCATTTTTTAGCATATTATGTTGTCCGAATGTTGTTTAAATGCTGTCCATTTTTGA
GCATATTATGATGTCCGAATGTTGTTTAAATGCTGTCCATTTTTTAGCATATTATGTTGTCCGAA
TGTTGTTT
Found at i:33402009 original size:20 final size:18
Alignment explanation
Indices: 33401962--33402010 Score: 57
Period size: 20 Copynumber: 2.7 Consensus size: 18
33401952 CAAGATAAAC
33401962 ATTAAATTAA-ATTTAAT
1 ATTAAATTAATATTTAAT
33401979 ATTAAGA-TAATCACTTTAAT
1 ATTAA-ATTAAT-A-TTTAAT
33401999 ATTAAATTAATA
1 ATTAAATTAATA
33402011 AAGTACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
17 8 0.30
18 1 0.04
19 3 0.11
20 15 0.56
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (18 bp):
ATTAAATTAATATTTAAT
Found at i:33405953 original size:12 final size:12
Alignment explanation
Indices: 33405938--33405962 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
33405928 ATCAAATTGG
33405938 ATAAAAAATTAA
1 ATAAAAAATTAA
33405950 ATAAAAAATTAA
1 ATAAAAAATTAA
33405962 A
1 A
33405963 AGTAAAAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAAAAAATTAA
Found at i:33407021 original size:97 final size:100
Alignment explanation
Indices: 33406907--33407104 Score: 321
Period size: 97 Copynumber: 2.0 Consensus size: 100
33406897 ATAGTCTCCG
*
33406907 TATATTTAGAATTTAGCTTTGTTGTTTTTAATAATTTAGTAA-ATT-TTTTTTTT-TACAATTTA
1 TATATTTAGAATTTAGCTTTGTTGTTTTTAAGAATTTAGTAACATTATTTTTTTTGTACAATTTA
**
33406969 ACCTTGTTGTTTTGAAAACAAATCTCATACATTTT
66 ACCTTCCTGTTTTGAAAACAAATCTCATACATTTT
* *
33407004 TATATTTAGAATTTAGCTTTGTTGTTTTTAAGAATTTAGTAACTTTATTTTTTTTGTATAATTTA
1 TATATTTAGAATTTAGCTTTGTTGTTTTTAAGAATTTAGTAACATTATTTTTTTTGTACAATTTA
*
33407069 ACCTTCCTGTTTTGAAAACAAATCTCATATATTTT
66 ACCTTCCTGTTTTGAAAACAAATCTCATACATTTT
33407104 T
1 T
33407105 TTGTTGGGAT
Statistics
Matches: 92, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
97 41 0.45
98 2 0.02
99 8 0.09
100 41 0.45
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.54
Consensus pattern (100 bp):
TATATTTAGAATTTAGCTTTGTTGTTTTTAAGAATTTAGTAACATTATTTTTTTTGTACAATTTA
ACCTTCCTGTTTTGAAAACAAATCTCATACATTTT
Found at i:33407067 original size:50 final size:48
Alignment explanation
Indices: 33406911--33407068 Score: 133
Period size: 50 Copynumber: 3.2 Consensus size: 48
33406901 TCTCCGTATA
* *
33406911 TTTAGAATTTAGCTTTGTTGTTTTTAATAATTTAGTAA-ATTTTTTTT
1 TTTACAATTTAGCTTTGTTGTTTTTAAAAATTTAGTAACATTTTTTTT
* * * * * *
33406958 TTTACAATTTAACCTTGTTGTTTTGAAAACAAATCTCA-T-ACATTTTTATA
1 TTTACAATTTAGCTTTGTTGTTTT--TAA-AAAT-TTAGTAACATTTTTTTT
* * *
33407008 TTTAGAATTTAGCTTTGTTGTTTTTAAGAATTTAGTAACTTTATTTTTT
1 TTTACAATTTAGCTTTGTTGTTTTTAAAAATTTAGTAACATT-TTTTTT
*
33407057 TTGTATAATTTA
1 TT-TACAATTTA
33407069 ACCTTCCTGT
Statistics
Matches: 84, Mismatches: 18, Indels: 15
0.72 0.15 0.13
Matches are distributed among these distances:
46 2 0.02
47 25 0.30
48 6 0.07
49 9 0.11
50 40 0.48
51 2 0.02
ACGTcount: A:0.28, C:0.06, G:0.09, T:0.56
Consensus pattern (48 bp):
TTTACAATTTAGCTTTGTTGTTTTTAAAAATTTAGTAACATTTTTTTT
Found at i:33410351 original size:16 final size:17
Alignment explanation
Indices: 33410330--33410363 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
33410320 TTCATATCTA
33410330 TCAACCT-ATTTAGACC
1 TCAACCTCATTTAGACC
*
33410346 TCAACCTCTTTTAGACC
1 TCAACCTCATTTAGACC
33410363 T
1 T
33410364 GATCAGCTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.26, C:0.32, G:0.06, T:0.35
Consensus pattern (17 bp):
TCAACCTCATTTAGACC
Found at i:33410549 original size:11 final size:11
Alignment explanation
Indices: 33410533--33410563 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
33410523 TGGTTTTGAA
33410533 TGTTATTTTCT
1 TGTTATTTTCT
33410544 TGTTATTTTCT
1 TGTTATTTTCT
*
33410555 TTTTATTTT
1 TGTTATTTT
33410564 GTTACCATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.10, C:0.06, G:0.06, T:0.77
Consensus pattern (11 bp):
TGTTATTTTCT
Found at i:33410582 original size:22 final size:22
Alignment explanation
Indices: 33410548--33410605 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
33410538 TTTTCTTGTT
* * *
33410548 ATTTTCTTTTTATTTTGTTACC
1 ATTTTATTATTATTTTGCTACC
* *
33410570 ATTTTATTATTATGTTGCTACT
1 ATTTTATTATTATTTTGCTACC
*
33410592 ATTTTATTGTTATT
1 ATTTTATTATTATT
33410606 GTTTGGATAT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.19, C:0.09, G:0.07, T:0.66
Consensus pattern (22 bp):
ATTTTATTATTATTTTGCTACC
Found at i:33410671 original size:30 final size:30
Alignment explanation
Indices: 33410637--33410698 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 30
33410627 TATTTTACTA
33410637 TTAATTTTGTTATTAATTTAAAAGCATTTG
1 TTAATTTTGTTATTAATTTAAAAGCATTTG
* * *
33410667 TTAATTTTGTTATTATTTTAGAGGCATTTG
1 TTAATTTTGTTATTAATTTAAAAGCATTTG
33410697 TT
1 TT
33410699 TGTTAAGTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.03, G:0.13, T:0.56
Consensus pattern (30 bp):
TTAATTTTGTTATTAATTTAAAAGCATTTG
Found at i:33410847 original size:12 final size:11
Alignment explanation
Indices: 33410816--33410843 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
33410806 CATATATATT
33410816 TAAAAATTATA
1 TAAAAATTATA
33410827 TAAAAATTATA
1 TAAAAATTATA
33410838 TAAAAA
1 TAAAAA
33410844 ATTAATACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (11 bp):
TAAAAATTATA
Found at i:33413013 original size:24 final size:22
Alignment explanation
Indices: 33412986--33413047 Score: 61
Period size: 24 Copynumber: 2.6 Consensus size: 22
33412976 TCTGTTTGAC
*
33412986 AACTATATTTTTTTCAACTCTCTT
1 AACTATGTTTTTTTC--CTCTCTT
* *
33413010 AACTCACTGTTTCTTTCTTCTCTT
1 AACT-A-TGTTTTTTTCCTCTCTT
33413034 AACTATGTTTTTTT
1 AACTATGTTTTTTT
33413048 TCACTTCCAA
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
22 8 0.25
23 1 0.03
24 14 0.44
25 1 0.03
26 8 0.25
ACGTcount: A:0.19, C:0.21, G:0.03, T:0.56
Consensus pattern (22 bp):
AACTATGTTTTTTTCCTCTCTT
Found at i:33413983 original size:51 final size:50
Alignment explanation
Indices: 33413900--33414018 Score: 125
Period size: 51 Copynumber: 2.3 Consensus size: 50
33413890 TTCTTTTAAA
* * *
33413900 TTTTCAATATTTAAAAAAAATCATAAATTTTTTAAAAAATATA-ACTTATT
1 TTTTCAATTTTTTAAAAAAATCATAAAATTTTTAAAAAATATATA-TTATT
* * * *
33413950 TTTTCAATTTTTTAAAAAAGTTATTAAAATTTTTATAATATATATATTATT
1 TTTTCAATTTTTTAAAAAAATCA-TAAAATTTTTAAAAAATATATATTATT
33414001 TTTT-ATAGTTTTTTAAAA
1 TTTTCA-A-TTTTTTAAAA
33414019 GTTAAACTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
50 20 0.34
51 27 0.47
52 11 0.19
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (50 bp):
TTTTCAATTTTTTAAAAAAATCATAAAATTTTTAAAAAATATATATTATT
Found at i:33414119 original size:19 final size:20
Alignment explanation
Indices: 33414082--33414119 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
33414072 TTTTTTCTAT
*
33414082 TTTTGAATTTTTATTAATTG
1 TTTTGAATTTTTATGAATTG
33414102 TTTTGAATTTTTA-GAATT
1 TTTTGAATTTTTATGAATT
33414120 TATAAATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (20 bp):
TTTTGAATTTTTATGAATTG
Found at i:33414669 original size:19 final size:20
Alignment explanation
Indices: 33414633--33414670 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
33414623 TTGGTTGGAA
33414633 TATTTTATTTGTTGAAAATC
1 TATTTTATTTGTTGAAAATC
*
33414653 TATTTTA-TTGTTTAAAAT
1 TATTTTATTTGTTGAAAAT
33414671 AAATTAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (20 bp):
TATTTTATTTGTTGAAAATC
Found at i:33421279 original size:9 final size:9
Alignment explanation
Indices: 33421265--33421345 Score: 62
Period size: 9 Copynumber: 9.1 Consensus size: 9
33421255 ATTATTTTAG
33421265 AAAATTTTT
1 AAAATTTTT
33421274 AAAA-TTTT
1 AAAATTTTT
33421282 AAAATTTTT
1 AAAATTTTT
*
33421291 ATATATTTTTT
1 A-A-AATTTTT
* *
33421302 AGAATATTT
1 AAAATTTTT
*
33421311 AGAATTTTTT
1 A-AAATTTTT
33421321 AAAA-TTTT
1 AAAATTTTT
33421329 -AAA-TTTT
1 AAAATTTTT
*
33421336 GAAATTTTT
1 AAAATTTTT
33421345 A
1 A
33421346 TCAATGTTTT
Statistics
Matches: 57, Mismatches: 9, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
7 7 0.12
8 15 0.26
9 21 0.37
10 7 0.12
11 7 0.12
ACGTcount: A:0.41, C:0.00, G:0.04, T:0.56
Consensus pattern (9 bp):
AAAATTTTT
Found at i:33421311 original size:20 final size:19
Alignment explanation
Indices: 33421278--33421335 Score: 66
Period size: 20 Copynumber: 3.1 Consensus size: 19
33421268 ATTTTTAAAA
* *
33421278 TTTTAAAATTTTTATATATT
1 TTTTAAAATATTTAGA-ATT
*
33421298 TTTTAGAATATTTAGAATT
1 TTTTAAAATATTTAGAATT
33421317 TTTTAAAAT-TTTA-AATT
1 TTTTAAAATATTTAGAATT
33421334 TT
1 TT
33421336 GAAATTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
17 6 0.18
18 4 0.12
19 11 0.32
20 13 0.38
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.60
Consensus pattern (19 bp):
TTTTAAAATATTTAGAATT
Found at i:33421818 original size:20 final size:20
Alignment explanation
Indices: 33421795--33421835 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
33421785 CTATTAAAAA
*
33421795 TTTTGTGAAAATTTT-AATT
1 TTTTTTGAAAATTTTGAATT
*
33421814 TTTTTTTAAAATTTTGAATT
1 TTTTTTGAAAATTTTGAATT
33421834 TT
1 TT
33421836 GTAAATGGAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.29, C:0.00, G:0.07, T:0.63
Consensus pattern (20 bp):
TTTTTTGAAAATTTTGAATT
Found at i:33422549 original size:24 final size:25
Alignment explanation
Indices: 33422506--33422557 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
33422496 ATTGTTTTGG
*
33422506 TACATAAACTTTTTTTTTGTCTAATT
1 TACATAAAC-TTTTTTTTGTCCAATT
33422532 TACATAAAC-TTTTTTTGTCCAATT
1 TACATAAACTTTTTTTTGTCCAATT
33422556 TA
1 TA
33422558 GTATCTACTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 16 0.64
26 9 0.36
ACGTcount: A:0.29, C:0.13, G:0.04, T:0.54
Consensus pattern (25 bp):
TACATAAACTTTTTTTTGTCCAATT
Found at i:33422567 original size:25 final size:24
Alignment explanation
Indices: 33422506--33422581 Score: 80
Period size: 25 Copynumber: 3.0 Consensus size: 24
33422496 ATTGTTTTGG
*
33422506 TACATAAACTTTTTTTTTGTCTAATT
1 TACATAAAC--TTTTTTTGTCCAATT
33422532 TACATAAACTTTTTTTGTCCAATT
1 TACATAAACTTTTTTTGTCCAATT
* ** *
33422556 TAGTATCTACTTTTTTTGTTCAATT
1 TA-CATAAACTTTTTTTGTCCAATT
33422581 T
1 T
33422582 GATATATGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
24 16 0.36
25 19 0.43
26 9 0.20
ACGTcount: A:0.25, C:0.13, G:0.05, T:0.57
Consensus pattern (24 bp):
TACATAAACTTTTTTTGTCCAATT
Found at i:33422594 original size:27 final size:26
Alignment explanation
Indices: 33422517--33422594 Score: 74
Period size: 25 Copynumber: 3.1 Consensus size: 26
33422507 ACATAAACTT
* *
33422517 TTTTTTTGTCTAATTTA-CATA-AAC
1 TTTTTTTGTCCAATTTAGTATATAAC
*
33422541 TTTTTTTGTCCAATTTAGTATCT-AC
1 TTTTTTTGTCCAATTTAGTATATAAC
*
33422566 TTTTTTTGTTCAATTT-GATATATGAAC
1 TTTTTTTGTCCAATTTAG-TATAT-AAC
33422593 TT
1 TT
33422595 GGGTTTTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
24 17 0.39
25 23 0.52
27 4 0.09
ACGTcount: A:0.24, C:0.12, G:0.08, T:0.56
Consensus pattern (26 bp):
TTTTTTTGTCCAATTTAGTATATAAC
Found at i:33422769 original size:20 final size:19
Alignment explanation
Indices: 33422746--33422792 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
33422736 TGAAAAATAA
33422746 AAAAATCAAAAAAATATTTT
1 AAAAATCAAAAAAA-ATTTT
*
33422766 AAAAAT-ATAAAAAATTTT
1 AAAAATCAAAAAAAATTTT
*
33422784 AAAATTCAA
1 AAAAATCAA
33422793 TGTTATCCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
18 10 0.43
19 7 0.30
20 6 0.26
ACGTcount: A:0.66, C:0.04, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAAATCAAAAAAAATTTT
Found at i:33425073 original size:20 final size:19
Alignment explanation
Indices: 33425037--33425077 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
33425027 GAATTTAGGA
*
33425037 AAATATTAAGTAAAAATTG
1 AAATATTAAATAAAAATTG
*
33425056 AAATATTAAATATGAAATTG
1 AAATATTAAATA-AAAATTG
33425076 AA
1 AA
33425078 TTGTGTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.59, C:0.00, G:0.10, T:0.32
Consensus pattern (19 bp):
AAATATTAAATAAAAATTG
Found at i:33431648 original size:19 final size:18
Alignment explanation
Indices: 33431610--33431648 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
33431600 AATGAAGCAG
*
33431610 AAAGGAAAGAAAAAATAA
1 AAAGGAAAGAAAAAAGAA
*
33431628 AAAGAGAAAGAAGAAAGAA
1 AAAG-GAAAGAAAAAAGAA
33431647 AA
1 AA
33431649 CCACGGCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.03
Consensus pattern (18 bp):
AAAGGAAAGAAAAAAGAA
Found at i:33432076 original size:19 final size:20
Alignment explanation
Indices: 33432052--33432092 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
33432042 GAATTTAGGA
*
33432052 AAATATTGAATA-AAAATTG
1 AAATATTCAATATAAAATTG
*
33432071 AAATATTCAATATGAAATTG
1 AAATATTCAATATAAAATTG
33432091 AA
1 AA
33432093 TTGTGTTATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.56, C:0.02, G:0.10, T:0.32
Consensus pattern (20 bp):
AAATATTCAATATAAAATTG
Found at i:33433277 original size:21 final size:20
Alignment explanation
Indices: 33433235--33433277 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
33433225 ATATAAAATG
* * *
33433235 ATGATTGGAATGATGTTTTA
1 ATGATTGAAATGATGATATA
33433255 ATGATATGAAATGATGATATA
1 ATGAT-TGAAATGATGATATA
33433276 AT
1 AT
33433278 TGTGGTACCT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.40, C:0.00, G:0.21, T:0.40
Consensus pattern (20 bp):
ATGATTGAAATGATGATATA
Found at i:33433806 original size:27 final size:28
Alignment explanation
Indices: 33433755--33433818 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
33433745 TGCTCGATTC
** *
33433755 TATTTGAATTTTTTTTCTAATTTTAAAT
1 TATTTGAATTTTTTTAATAAATTTAAAT
33433783 TATTTG-ATTTTTTTAATAAATTTAAAT
1 TATTTGAATTTTTTTAATAAATTTAAAT
* *
33433810 AATTCGAAT
1 TATTTGAAT
33433819 AATAAATTAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 22 0.73
28 8 0.27
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (28 bp):
TATTTGAATTTTTTTAATAAATTTAAAT
Found at i:33433945 original size:22 final size:20
Alignment explanation
Indices: 33433917--33433961 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 20
33433907 AATAATCTTC
33433917 AAAATTTCAAAATATTTATTAG
1 AAAATTTCAAAAT-TTTA-TAG
33433939 AAAATTTCAAAATTTTATAG
1 AAAATTTCAAAATTTTATAG
33433959 AAA
1 AAA
33433962 TAAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 6 0.26
21 4 0.17
22 13 0.57
ACGTcount: A:0.53, C:0.04, G:0.04, T:0.38
Consensus pattern (20 bp):
AAAATTTCAAAATTTTATAG
Found at i:33437302 original size:18 final size:16
Alignment explanation
Indices: 33437281--33437323 Score: 50
Period size: 18 Copynumber: 2.6 Consensus size: 16
33437271 GAAAGCGAGC
33437281 GAATAAAAAGCATTGTT
1 GAATAAAAAGCATTG-T
* *
33437298 AGAATTAAAGGCATTGT
1 -GAATAAAAAGCATTGT
33437315 GAATAAAAA
1 GAATAAAAA
33437324 AATATGCTAA
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
16 7 0.33
17 1 0.05
18 13 0.62
ACGTcount: A:0.51, C:0.05, G:0.19, T:0.26
Consensus pattern (16 bp):
GAATAAAAAGCATTGT
Found at i:33439622 original size:25 final size:26
Alignment explanation
Indices: 33439593--33439650 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
33439583 TTTAATACGT
*
33439593 ATATTAATAGT-ATTTTATTAAT-TTA
1 ATATTAA-AGTGATTATATTAATATTA
*
33439618 ATATTAAAGTGATTATCTTAATATTA
1 ATATTAAAGTGATTATATTAATATTA
33439644 A-ATTAAA
1 ATATTAAA
33439651 TTAAATATCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 3 0.10
25 22 0.76
26 4 0.14
ACGTcount: A:0.45, C:0.02, G:0.05, T:0.48
Consensus pattern (26 bp):
ATATTAAAGTGATTATATTAATATTA
Found at i:33439707 original size:61 final size:58
Alignment explanation
Indices: 33439635--33439750 Score: 135
Period size: 61 Copynumber: 1.9 Consensus size: 58
33439625 AGTGATTATC
* *
33439635 TTAATATTAAATTAAAT-TAAATATCTATCTTGTAGATAAATATTATATTAATTTAATAGAT
1 TTAATACTAAATTAAATCT-AATATCTATC-T-T-CATAAATATTATATTAATTTAATAGAT
* * **
33439696 TTAATACTAAATTTAATCTAATATTTATCTTCATACGTATTATATTAATTTAATA
1 TTAATACTAAATTAAATCTAATATCTATCTTCATAAATATTATATTAATTTAATA
33439751 TTAAAATGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 5
0.81 0.10 0.08
Matches are distributed among these distances:
58 21 0.44
59 1 0.02
60 1 0.02
61 24 0.50
62 1 0.02
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.47
Consensus pattern (58 bp):
TTAATACTAAATTAAATCTAATATCTATCTTCATAAATATTATATTAATTTAATAGAT
Found at i:33444318 original size:23 final size:22
Alignment explanation
Indices: 33444282--33444360 Score: 113
Period size: 23 Copynumber: 3.5 Consensus size: 22
33444272 TAAGTGGATA
*
33444282 TGTTGGAGGTTATATTTGGTTG
1 TGTTGGAGGGTATATTTGGTTG
33444304 TGCTTGGAGGGTATATTTGGTTG
1 TG-TTGGAGGGTATATTTGGTTG
*
33444327 TGTTGAGAGGCTATATTTGGTTG
1 TGTTG-GAGGGTATATTTGGTTG
33444350 TGTTCGGAGGG
1 TGTT-GGAGGG
33444361 AACATATGTG
Statistics
Matches: 51, Mismatches: 3, Indels: 5
0.86 0.05 0.08
Matches are distributed among these distances:
22 5 0.10
23 45 0.88
24 1 0.02
ACGTcount: A:0.14, C:0.04, G:0.39, T:0.43
Consensus pattern (22 bp):
TGTTGGAGGGTATATTTGGTTG
Found at i:33448853 original size:146 final size:148
Alignment explanation
Indices: 33448634--33448931 Score: 442
Period size: 146 Copynumber: 2.0 Consensus size: 148
33448624 TTTTTTTTTT
*
33448634 AAAATCACTATTTTTTTTTGAAAATCAAAGCTTTATTTGGAAATAGTTGAAAAAGATCAAAACTT
1 AAAATCACTATTTTTTCTTGAAAATCAAAGCTTTATTTGGAAATAGTTGAAAAAGATCAAAACTT
* * *
33448699 TATTTTAAAAAATTAAACTTTTCTTTTAAAATGACTAAAAA-AATATTTTTTATTTTTAAAAATT
66 TATTTTAAAAAATTAAACTTTTCCTTTAAAATAACTAAAAATAATA-TTTTTATTTTTAAAAATC
33448763 TAAACTCTC-TTTTTTAAA
130 TAAACTCTCTTTTTTTAAA
* *
33448781 AAAATCACTA-TTTTTCTT-AATAATCAAAGTTTTATTTTGAAATAGTTGAAAAAGATCAAAACT
1 AAAATCACTATTTTTTCTTGAA-AATCAAAGCTTTATTTGGAAATAGTTGAAAAAGATCAAAACT
* * * * *
33448844 TTGTTTTAAAAATTTGAACTTTTCCTTTAAAATAACTAAAAATCATATTTTTCTTTTTAAAAATC
65 TTATTTTAAAAAATTAAACTTTTCCTTTAAAATAACTAAAAATAATATTTTTATTTTTAAAAATC
*
33448909 TAAACTTTCTTTTTTTAAA
130 TAAACTCTCTTTTTTTAAA
33448928 AAAA
1 AAAA
33448932 ATCAAAACTT
Statistics
Matches: 136, Mismatches: 12, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
145 2 0.01
146 108 0.79
147 26 0.19
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (148 bp):
AAAATCACTATTTTTTCTTGAAAATCAAAGCTTTATTTGGAAATAGTTGAAAAAGATCAAAACTT
TATTTTAAAAAATTAAACTTTTCCTTTAAAATAACTAAAAATAATATTTTTATTTTTAAAAATCT
AAACTCTCTTTTTTTAAA
Found at i:33449299 original size:3 final size:3
Alignment explanation
Indices: 33449293--33449335 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
33449283 TAATATTTAA
33449293 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG T
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG T
33449336 TACTCAACAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.35
Consensus pattern (3 bp):
TAG
Found at i:33449626 original size:42 final size:42
Alignment explanation
Indices: 33449554--33449680 Score: 175
Period size: 42 Copynumber: 3.0 Consensus size: 42
33449544 TATACAAGGA
* ** *
33449554 AAAAATAAATGGACCTCCATGCCTGAGCCTCTAAATGCAATG
1 AAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAATG
* *
33449596 AAAAGTAAATGGTCCTCTAC-CCTTGGGCCTCTAAATGCAATG
1 AAAAGTAAATGGACCTCCACACC-TGGGCCTCTAAATGCAATG
*
33449638 AAAAGTAAATGGACTTCCACACCTGGGCCTCTAAATGCAATG
1 AAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAATG
33449680 A
1 A
33449681 GTGCTTTTCT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 2 0.03
42 71 0.95
43 2 0.03
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (42 bp):
AAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAATG
Found at i:33450116 original size:22 final size:21
Alignment explanation
Indices: 33450088--33450147 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 21
33450078 CTCTCTCTAT
33450088 TTTTTCTTCTTTTTTTTGTTTC
1 TTTTTCTTCTTTTTTTT-TTTC
33450110 TTTTTCTGT-TTTGTTTTTTTTC
1 TTTTTCT-TCTTT-TTTTTTTTC
33450132 TTCTTTCTTCTTTTTT
1 TT-TTTCTTCTTTTTT
33450148 CTTTAGTGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
22 20 0.59
23 14 0.41
ACGTcount: A:0.00, C:0.13, G:0.05, T:0.82
Consensus pattern (21 bp):
TTTTTCTTCTTTTTTTTTTTC
Found at i:33450123 original size:17 final size:16
Alignment explanation
Indices: 33450101--33450162 Score: 56
Period size: 17 Copynumber: 3.8 Consensus size: 16
33450091 TTCTTCTTTT
33450101 TTTTGTTTCTTTTTCTG
1 TTTTGTTT-TTTTTCTG
33450118 TTTTGTTTTTTTTCT-
1 TTTTGTTTTTTTTCTG
*
33450133 TCTTTCTTCTTTTTTCT-
1 T-TTTGTT-TTTTTTCTG
*
33450150 TTAGTGTTTTTTT
1 TT-TTGTTTTTTT
33450163 ATTTAAGCAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
15 1 0.03
16 18 0.46
17 20 0.51
ACGTcount: A:0.02, C:0.11, G:0.08, T:0.79
Consensus pattern (16 bp):
TTTTGTTTTTTTTCTG
Found at i:33450142 original size:26 final size:26
Alignment explanation
Indices: 33450097--33450147 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
33450087 TTTTTTCTTC
*
33450097 TTTTTTTTGTTTCTTTTTCTGTTTTG
1 TTTTTTTTGCTTCTTTTTCTGTTTTG
*
33450123 TTTTTTTT-CTTCTTTCTTCTTTTTT
1 TTTTTTTTGCTTCTTT-TTCTGTTTT
33450148 CTTTAGTGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 6 0.27
26 16 0.73
ACGTcount: A:0.00, C:0.12, G:0.06, T:0.82
Consensus pattern (26 bp):
TTTTTTTTGCTTCTTTTTCTGTTTTG
Found at i:33460108 original size:71 final size:73
Alignment explanation
Indices: 33459990--33460129 Score: 212
Period size: 71 Copynumber: 1.9 Consensus size: 73
33459980 CGATCTATTA
* *
33459990 TTATTATTATTTAAAAGATTTAATTAATAACATTGAACCTATAAAGATCTTATAAAAGTATCTTA
1 TTATTATTATTTAAAAGATTTAATTAATAACATTGAACCTATAAAGATCTTACAAAAGTATCCTA
33460055 TGTCAGGC
66 TGTCAGGC
* * * *
33460063 TTATTATTA-TT-AAATATTTAATTAATAACGTTGAACCTATCAAGATCTTACGAAAGTATCCTA
1 TTATTATTATTTAAAAGATTTAATTAATAACATTGAACCTATAAAGATCTTACAAAAGTATCCTA
33460126 TGTC
66 TGTC
33460130 GGGTTTATGA
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
71 50 0.82
72 2 0.03
73 9 0.15
ACGTcount: A:0.39, C:0.11, G:0.09, T:0.40
Consensus pattern (73 bp):
TTATTATTATTTAAAAGATTTAATTAATAACATTGAACCTATAAAGATCTTACAAAAGTATCCTA
TGTCAGGC
Found at i:33470333 original size:54 final size:54
Alignment explanation
Indices: 33470275--33470396 Score: 129
Period size: 54 Copynumber: 2.3 Consensus size: 54
33470265 CACGGCATAA
* * *
33470275 GACACGACCATGTGT-ATCAAGTCAGAAAGTTACACGGCCTAGCACACGGCCTGC
1 GACACGACCGTGTGTCA-CAAGTCAGAAAGTTACACGACCTAGCACACGACCTGC
** * ** * * *
33470329 GACACGGTCGTGTGTCACAAGTTAGAGTGTTACACGATCTGGCACATGACCTGC
1 GACACGACCGTGTGTCACAAGTCAGAAAGTTACACGACCTAGCACACGACCTGC
33470383 GACACGACCGTGTG
1 GACACGACCGTGTG
33470397 ACCTAACTCA
Statistics
Matches: 54, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
54 53 0.98
55 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.27, T:0.20
Consensus pattern (54 bp):
GACACGACCGTGTGTCACAAGTCAGAAAGTTACACGACCTAGCACACGACCTGC
Found at i:33472146 original size:33 final size:33
Alignment explanation
Indices: 33472104--33472169 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
33472094 CTCGTGGGGA
33472104 AGCTTTGGCATCTGATGTAATTACTGGAACATT
1 AGCTTTGGCATCTGATGTAATTACTGGAACATT
33472137 AGCTTTGGCATCTGATGTAATTACTGGAACATT
1 AGCTTTGGCATCTGATGTAATTACTGGAACATT
33472170 TTCTATCTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.36
Consensus pattern (33 bp):
AGCTTTGGCATCTGATGTAATTACTGGAACATT
Found at i:33479273 original size:20 final size:20
Alignment explanation
Indices: 33479248--33479290 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
33479238 TTGTATGGGA
*
33479248 TTGCACTTCGATGTCTCTGT
1 TTGCACTTCGATGCCTCTGT
* *
33479268 TTGCACTTTGGTGCCTCTGT
1 TTGCACTTCGATGCCTCTGT
33479288 TTG
1 TTG
33479291 GACATTTGTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.07, C:0.23, G:0.23, T:0.47
Consensus pattern (20 bp):
TTGCACTTCGATGCCTCTGT
Found at i:33482131 original size:14 final size:14
Alignment explanation
Indices: 33482112--33482151 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
33482102 CCACACATTT
33482112 TTCTTCTCTGCTGG
1 TTCTTCTCTGCTGG
*
33482126 TTCTTCTTTGCTGG
1 TTCTTCTCTGCTGG
* *
33482140 TTGTTGTCTGCT
1 TTCTTCTCTGCT
33482152 ACTGCTAGTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.23, T:0.55
Consensus pattern (14 bp):
TTCTTCTCTGCTGG
Found at i:33482211 original size:11 final size:11
Alignment explanation
Indices: 33482195--33482229 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
33482185 TCCAAATTTT
*
33482195 GTTCTCTGTTG
1 GTTCTCTGCTG
33482206 GTTCTCTGCTG
1 GTTCTCTGCTG
33482217 GTTCTCTGCTG
1 GTTCTCTGCTG
33482228 GT
1 GT
33482230 GCTTTTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.00, C:0.23, G:0.29, T:0.49
Consensus pattern (11 bp):
GTTCTCTGCTG
Found at i:33484732 original size:21 final size:21
Alignment explanation
Indices: 33484707--33484750 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
33484697 TTTTGTTACA
33484707 ATGGCTTCTACAGATTCATCC
1 ATGGCTTCTACAGATTCATCC
*
33484728 ATGGCTTCTACAGATTCTTCC
1 ATGGCTTCTACAGATTCATCC
33484749 AT
1 AT
33484751 TCTTTGGCAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.27, G:0.14, T:0.36
Consensus pattern (21 bp):
ATGGCTTCTACAGATTCATCC
Found at i:33489436 original size:18 final size:18
Alignment explanation
Indices: 33489413--33489460 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
33489403 AAAATATGAG
* *
33489413 AAATGATGTTCACATTTT
1 AAATGATGTTCACATCTC
33489431 AAATGATGTTCACATCTC
1 AAATGATGTTCACATCTC
33489449 AAATGATGTTCA
1 AAATGATGTTCA
33489461 AATTGATGGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (18 bp):
AAATGATGTTCACATCTC
Found at i:33489961 original size:72 final size:72
Alignment explanation
Indices: 33489882--33490016 Score: 218
Period size: 72 Copynumber: 1.9 Consensus size: 72
33489872 CAATGCTAAA
* * * *
33489882 CTAGTTTTATCT-ATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTA
1 CTAGTTTTAT-TAAAAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTATTTA
33489946 TGTGGACT
65 TGTGGACT
33489954 CTAGTTTTATTAAAAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTATTT
1 CTAGTTTTATTAAAAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTATTT
33490017 TTTACTAAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
71 1 0.02
72 57 0.98
ACGTcount: A:0.24, C:0.07, G:0.14, T:0.56
Consensus pattern (72 bp):
CTAGTTTTATTAAAAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTATTTAT
GTGGACT
Found at i:33490031 original size:72 final size:75
Alignment explanation
Indices: 33489877--33490049 Score: 216
Period size: 72 Copynumber: 2.4 Consensus size: 75
33489867 AACAACAATG
* * *
33489877 CTAAACTAGTTTTATCT-ATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTT
1 CTAAACTAGTTTTAT-TAATAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTT
33489941 ATTTATGTGGA
65 ATTTATGTGGA
*
33489952 CT---CTAGTTTTATTAAAAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
1 CTAAACTAGTTTTATTAATAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
*
33490014 TTT-T-T-TA
66 TTTATGTGGA
* * *
33490021 CTAAATTAGTTTTATCAATAGTTGTTTAT
1 CTAAACTAGTTTTATTAATAGTTATTTAT
33490050 ATGTAATTTT
Statistics
Matches: 85, Mismatches: 9, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
69 3 0.04
70 1 0.01
71 2 0.02
72 77 0.91
75 2 0.02
ACGTcount: A:0.26, C:0.07, G:0.13, T:0.54
Consensus pattern (75 bp):
CTAAACTAGTTTTATTAATAGTTATTTATGTTTGGTCTTTAGATATTGAATTTATATTCTACTTA
TTTATGTGGA
Found at i:33494267 original size:37 final size:37
Alignment explanation
Indices: 33494217--33494295 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
33494207 TTATTACGAA
* * *
33494217 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
33494254 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
33494291 GTCTT
1 GTCTT
33494296 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:33494492 original size:47 final size:47
Alignment explanation
Indices: 33494414--33494824 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
33494404 CCCTTCGGGA
* * * * * *
33494414 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
33494461 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33494508 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33494555 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33494602 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33494649 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33494696 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33494743 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
33494790 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
33494825 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:33495986 original size:18 final size:18
Alignment explanation
Indices: 33495963--33496004 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
33495953 CATATGCATT
33495963 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
33495981 TTTAATCACATCAAGCAA
1 TTTAATCACATCAAGCAA
33495999 TTTAAT
1 TTTAAT
33496005 ACAATTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.43, C:0.19, G:0.05, T:0.33
Consensus pattern (18 bp):
TTTAATCACATCAAGCAA
Found at i:33500876 original size:67 final size:67
Alignment explanation
Indices: 33500768--33501072 Score: 556
Period size: 67 Copynumber: 4.6 Consensus size: 67
33500758 GTCCAAAAAG
* *
33500768 AAATAATACATGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAA
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAA
33500833 CA
66 CA
33500835 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAA
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAA
33500900 CA
66 CA
*
33500902 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAGAGATTCCCTGCAA
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAA
33500967 CA
66 CA
*
33500969 AAATAATGCGTGAATAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAA
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAA
33501034 CA
66 CA
* *
33501036 AAATAATGCGTGAACAGGAAATATTCCCTGCAAGAAA
1 AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAA
33501073 AGACAAGTGA
Statistics
Matches: 230, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 230 1.00
ACGTcount: A:0.41, C:0.17, G:0.23, T:0.18
Consensus pattern (67 bp):
AAATAATGCGTGAACAGGAGAGATTCCCTGCAAGAAATGATGTGAACAGGAAAGATTCCCTGCAA
CA
Found at i:33503045 original size:21 final size:21
Alignment explanation
Indices: 33503010--33503050 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
33503000 TGATATTTTT
*
33503010 TTTAATTATGATATTTATATA
1 TTTAATTATGATATTCATATA
33503031 TTTAATTAT-ATTATTCATAT
1 TTTAATTATGA-TATTCATAT
33503051 TCATATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.59
Consensus pattern (21 bp):
TTTAATTATGATATTCATATA
Found at i:33505583 original size:42 final size:42
Alignment explanation
Indices: 33505475--33505662 Score: 216
Period size: 42 Copynumber: 4.4 Consensus size: 42
33505465 TTTTGATGTG
* * * * * *
33505475 TGATTTTGTGTAAAACCACGTTTGGGACATTGCCATCG-ATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
* *
33505516 TGAGATTTACATGTAAGACCATGTCTGGGACATTGACATCGTATA
1 T--GATTT-CGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
33505561 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
* * *
33505603 TGATTTCGTGTAAGACCTTGTCTGGGACAGTGGCATCGATATT
1 TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCG-TATA
* *
33505646 TGATTGCATGTAAGACC
1 TGATTTCGTGTAAGACC
33505663 TCGTCTAGGA
Statistics
Matches: 128, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
41 1 0.01
42 70 0.55
43 28 0.22
44 26 0.20
45 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34
Consensus pattern (42 bp):
TGATTTCGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
Found at i:33505680 original size:85 final size:84
Alignment explanation
Indices: 33505527--33505681 Score: 204
Period size: 85 Copynumber: 1.8 Consensus size: 84
33505517 GAGATTTACA
* * * *
33505527 TGTAAGACCATGTCTGGGACATTGACATCGTATATGATTTCGTGTAAGACCATGTCTGGGACATT
1 TGTAAGACCATGTCTGGGACAGTGACATCGTATATGATTGCATGTAAGACCATGTCTAGGACATT
33505592 GGCATCGTATATGATTTCG
66 GGCATCGTATATGATTTCG
* * * **
33505611 TGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATTGCATGTAAGACC-TCGTCTAGGATG
1 TGTAAGACCATGTCTGGGACAGTGACATCG-TATATGATTGCATGTAAGACCAT-GTCTAGGACA
33505675 TTGGCAT
64 TTGGCAT
33505682 TGTACGAGCT
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
84 28 0.47
85 32 0.53
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (84 bp):
TGTAAGACCATGTCTGGGACAGTGACATCGTATATGATTGCATGTAAGACCATGTCTAGGACATT
GGCATCGTATATGATTTCG
Found at i:33507910 original size:35 final size:35
Alignment explanation
Indices: 33507858--33507971 Score: 140
Period size: 35 Copynumber: 3.3 Consensus size: 35
33507848 CACATTTCGC
* *
33507858 ATACCTTATTCATTTAACATCCCACCATAACGACA
1 ATACCTCATTCATTTAACATCCCACCACAACGACA
* * * *
33507893 ATTCCTCATTCAATTAACATCCCACCACAATGCCA
1 ATACCTCATTCATTTAACATCCCACCACAACGACA
* *
33507928 ATACCTCATTCATTTAACATCTCGA-CACAACGCCA
1 ATACCTCATTCATTTAACATC-CCACCACAACGACA
33507963 ATACCTCAT
1 ATACCTCAT
33507972 AAAAAGAAAA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
35 66 0.97
36 2 0.03
ACGTcount: A:0.35, C:0.34, G:0.04, T:0.27
Consensus pattern (35 bp):
ATACCTCATTCATTTAACATCCCACCACAACGACA
Found at i:33522529 original size:41 final size:40
Alignment explanation
Indices: 33522472--33522830 Score: 396
Period size: 41 Copynumber: 8.6 Consensus size: 40
33522462 GGATCCCTAT
* *
33522472 GGAATCAACACTTAGCAACCACCTTATAATCAATGATACAG
1 GGAATCAGCACTTAGCAACC-CCTTATAATCAATGATACGG
* * *
33522513 GGAATCAGCACATAGCAACCCCTT-TCCCAATCAAGGATACGAT
1 GGAATCAGCACTTAGCAACCCCTTAT---AATCAATGATACG-G
* *
33522556 GGAATTAGCACTTAGCAAGCACCTTATAATCAATGATACGG
1 GGAATCAGCACTTAGCAA-CCCCTTATAATCAATGATACGG
* * *
33522597 GGAATCAGCACATAGCAACCCCTTTCACAATCAAGGATACGG
1 GGAATCAGCACTTAGCAACCCC-TT-ATAATCAATGATACGG
33522639 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGG
1 -GGAATCAGCACTTAGCAACC-CCTTATAATCAATGATACGG
* * * *
33522681 GGAATCAGCACATAGCAACCCCTTTAACAATCAAGGATACAGT
1 GGAATCAGCACTTAGCAACCCC-TT-ATAATCAATGATAC-GG
33522724 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGG
1 GGAATCAGCACTTAGCAACC-CCTTATAATCAATGATACGG
* * * * *
33522765 GGAATCAACACATAGCAACCCCTTTTTGATCAATGATTCGG
1 GGAATCAGCACTTAGCAACCCC-TTATAATCAATGATACGG
*
33522806 GGAATCTGCACTTAGCAACCCCTTA
1 GGAATCAGCACTTAGCAACCCCTTA
33522831 CATTCAAAGA
Statistics
Matches: 268, Mismatches: 35, Indels: 31
0.80 0.10 0.09
Matches are distributed among these distances:
39 1 0.00
40 13 0.05
41 110 0.41
42 75 0.28
43 59 0.22
44 9 0.03
45 1 0.00
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.22
Consensus pattern (40 bp):
GGAATCAGCACTTAGCAACCCCTTATAATCAATGATACGG
Found at i:33522582 original size:84 final size:84
Alignment explanation
Indices: 33522470--33522789 Score: 552
Period size: 84 Copynumber: 3.8 Consensus size: 84
33522460 AAGGATCCCT
* *
33522470 ATGGAATCAACACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAGCACATAGCAACCCC
1 ATGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
*
33522535 TTTCCCAATCAAGGATACG
66 TTTCACAATCAAGGATACG
* *
33522554 ATGGAATTAGCACTTAGCAAGCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
1 ATGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
33522619 TTTCACAATCAAGGATACG
66 TTTCACAATCAAGGATACG
*
33522638 GTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
1 ATGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
*
33522703 TTTAACAATCAAGGATAC-
66 TTTCACAATCAAGGATACG
*
33522721 AGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCC
1 A-TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCC
33522786 CTTT
65 CTTT
33522790 TTGATCAATG
Statistics
Matches: 224, Mismatches: 11, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
84 224 1.00
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (84 bp):
ATGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCC
TTTCACAATCAAGGATACG
Found at i:33522714 original size:168 final size:167
Alignment explanation
Indices: 33522471--33522830 Score: 564
Period size: 168 Copynumber: 2.2 Consensus size: 167
33522461 AGGATCCCTA
*
33522471 TGGAATCAACACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAGCACATAGCAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAGCACATAGCAACCCCT
** * *
33522536 TTCCCAATCAAGGATAC-GATGGAATTAGCACTTAGCAAGCACCTTATAATCAATGATACGGGGA
66 TTAACAATCAAGGATACAG-TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGA
*
33522600 ATCAGCACATAGCAACCCCTTTCACAATCAAGGATACGG
130 ATCAACACATAGCAACCCCTTT-ACAATCAAGGATACGG
*
33522639 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAGCACATAGCAACCCCT
33522704 TTAACAATCAAGGATACAGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAA
66 TTAACAATCAAGGATACAGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAA
*** * *
33522769 TCAACACATAGCAACCCCTTTTTGATCAATGATTCGG
131 TCAACACATAGCAACCCCTTTACAATCAAGGATACGG
*
33522806 -GGAATCTGCACTTAGCAACC-CCTTA
1 TGGAATCAGCACTTAGCAACCACCTTA
33522831 CATTCAAAGA
Statistics
Matches: 178, Mismatches: 13, Indels: 5
0.91 0.07 0.03
Matches are distributed among these distances:
165 5 0.03
166 19 0.11
167 11 0.06
168 142 0.80
169 1 0.01
ACGTcount: A:0.36, C:0.26, G:0.17, T:0.22
Consensus pattern (167 bp):
TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAGCACATAGCAACCCCT
TTAACAATCAAGGATACAGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAA
TCAACACATAGCAACCCCTTTACAATCAAGGATACGG
Found at i:33524071 original size:51 final size:50
Alignment explanation
Indices: 33523995--33524282 Score: 294
Period size: 51 Copynumber: 5.7 Consensus size: 50
33523985 ATATAAATAA
* * * * * *
33523995 TGGTCACATGTGTTGTACTAAGTGAAGGCTACTATGTGTATCGAGAAGCTT
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGA-AAACTT
* * * * *
33524046 TGGTCATATGTGTAGTACTGTGTGAAGGCTACTACGTGAATC-AATAAATGA
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAA-AACT-T
* * * * * *
33524097 TGGTCAAATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTT
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGA-AAACTT
*
33524148 TGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAC-T
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-AAAACTT
* *
33524198 TGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAAC-T
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-AAAACTT
* **
33524248 TGATCATGTGTGTAGTACTATGTGAAGGCTACTAC
1 TGGTCACATGTGTAGTACTATGTGAAGGCTACTAC
33524283 ATGTATCGAA
Statistics
Matches: 204, Mismatches: 28, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
49 1 0.00
50 87 0.43
51 111 0.54
52 4 0.02
53 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (50 bp):
TGGTCACATGTGTAGTACTATGTGAAGGCTACTACGTGAACCGAAAACTT
Found at i:33524163 original size:102 final size:101
Alignment explanation
Indices: 33523987--33524282 Score: 382
Period size: 102 Copynumber: 2.9 Consensus size: 101
33523977 TGTTACATAT
* *
33523987 ATAAATAATGGTCACATGTGTTGTACTAAGTGAAGGCTACTATGTGTATCGAGAAGCTTTGGTCA
1 ATAAATAATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGGTCA
* *
33524052 TATGTGTAGTACTGTGTGAAGGCTACTACGTGAATCA
66 TGTGTGTAGTACTATGTGAAGGCTACTACGTGAA-CA
* * *
33524089 ATAAATGATGGTCAAATGTGTAGTACTAAGTGAAGGCTACAATGTGTACCGAGAAGCTTTGGTCA
1 ATAAATAATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGGTCA
* *
33524154 CGTGTGTAGTACTATGTGAAGGCTACTACGTGAACC
66 TGTGTGTAGTACTATGTGAAGGCTACTACGTGAACA
* * * * * * * * *
33524190 GTAAA-ACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGAT
1 ATAAATA-ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCG-AGAAGCTTTGGT
33524252 CATGTGTGTAGTACTATGTGAAGGCTACTAC
64 CATGTGTGTAGTACTATGTGAAGGCTACTAC
33524283 ATGTATCGAA
Statistics
Matches: 170, Mismatches: 22, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
100 34 0.20
101 44 0.26
102 92 0.54
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (101 bp):
ATAAATAATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGCTTTGGTCA
TGTGTGTAGTACTATGTGAAGGCTACTACGTGAACA
Found at i:33524218 original size:50 final size:50
Alignment explanation
Indices: 33524054--33524282 Score: 280
Period size: 50 Copynumber: 4.5 Consensus size: 50
33524044 TTTGGTCATA
* ** *** * **
33524054 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCAATAAATGATGGTCAAA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAA-CCGTAAAACTTGATCACG
* * * * * *
33524105 TGTGTAGTACTAAGTGAAGGCTACAATGTGTACCG-AGAAGCTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTA-AAAC-TTGATCACG
33524156 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCACG
*
33524206 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCATG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCACG
33524256 TGTGTAGTACTATGTGAAGGCTACTAC
1 TGTGTAGTACTATGTGAAGGCTACTAC
33524283 ATGTATCGAA
Statistics
Matches: 156, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
49 1 0.01
50 87 0.56
51 67 0.43
52 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGATCACG
Found at i:33531436 original size:21 final size:22
Alignment explanation
Indices: 33531406--33531447 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
33531396 GAACCAGTTG
33531406 GTGCTAGTAGTACAT-GTGCAT
1 GTGCTAGTAGTACATCGTGCAT
* *
33531427 GTGCTTGTAGTTCATCGTGCA
1 GTGCTAGTAGTACATCGTGCA
33531448 CCAATAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.19, C:0.17, G:0.29, T:0.36
Consensus pattern (22 bp):
GTGCTAGTAGTACATCGTGCAT
Found at i:33537073 original size:21 final size:21
Alignment explanation
Indices: 33537033--33537074 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
33537023 GATTCTAGTA
*
33537033 TGGATGCATCTGGCTTTGCTG
1 TGGATGCATCTGGCTGTGCTG
33537054 TGGATGCATCTGAG-TGTGCTG
1 TGGATGCATCTG-GCTGTGCTG
33537075 ATTGTAGTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.12, C:0.17, G:0.36, T:0.36
Consensus pattern (21 bp):
TGGATGCATCTGGCTGTGCTG
Found at i:33540113 original size:241 final size:241
Alignment explanation
Indices: 33539689--33540177 Score: 942
Period size: 241 Copynumber: 2.0 Consensus size: 241
33539679 CCACAAGATG
*
33539689 TGGATTTAAGACAAGCGATCCTTATCGAGGCGCATAGTAGCTCTTACGCTATGCATCCCGGTAGT
1 TGGATTTAAGACAAGCGATCCTTACCGAGGCGCATAGTAGCTCTTACGCTATGCATCCCGGTAGT
*
33539754 AGTAAAATGTACCATGATCTTTGTGAGAATTATTGGTAGCTCGGGTTGAAGCGTGATGTTACGGA
66 AGTAAAATGTACCATGATCTTTGTGAGAATTATTGGTAGCTCGGGTTGAAGCATGATGTTACGGA
*
33539819 TTTTGTGGCTTGATGCTTAGTTTGTCAAAAGCTGAAAGGTGAACATCAAATTCCTTCAGGTTTTG
131 TTTTGTGGCTTGATGCTTAGTTTGTCAAAAGCTGAAAGGTGAACATAAAATTCCTTCAGGTTTTG
33539884 ATACAACCGATTGTGATTCCTGAATAGAAGTGGGAAAGGATTACTA
196 ATACAACCGATTGTGATTCCTGAATAGAAGTGGGAAAGGATTACTA
33539930 TGGATTTAAGACAAGCGATCCTTACCGAGGCGCATAGTAGCTCTTACGCTATGCATCCCGGTAGT
1 TGGATTTAAGACAAGCGATCCTTACCGAGGCGCATAGTAGCTCTTACGCTATGCATCCCGGTAGT
*
33539995 AGTAAAATGTACCATGATCTTTGTGAGAATTATTGGTGGCTCGGGTTGAAGCATGATGTTACGGA
66 AGTAAAATGTACCATGATCTTTGTGAGAATTATTGGTAGCTCGGGTTGAAGCATGATGTTACGGA
33540060 TTTTGTGGCTTGATGCTTAGTTTGTCAAAAGCTGAAAGGTGAACATAAAATTCCTTCAGGTTTTG
131 TTTTGTGGCTTGATGCTTAGTTTGTCAAAAGCTGAAAGGTGAACATAAAATTCCTTCAGGTTTTG
33540125 ATACAACCGATTGTGATTCCTGAATAGAAGTGGGAAAGGATTACTA
196 ATACAACCGATTGTGATTCCTGAATAGAAGTGGGAAAGGATTACTA
33540171 TGGATTT
1 TGGATTT
33540178 TGTTTCGGGC
Statistics
Matches: 244, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 244 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (241 bp):
TGGATTTAAGACAAGCGATCCTTACCGAGGCGCATAGTAGCTCTTACGCTATGCATCCCGGTAGT
AGTAAAATGTACCATGATCTTTGTGAGAATTATTGGTAGCTCGGGTTGAAGCATGATGTTACGGA
TTTTGTGGCTTGATGCTTAGTTTGTCAAAAGCTGAAAGGTGAACATAAAATTCCTTCAGGTTTTG
ATACAACCGATTGTGATTCCTGAATAGAAGTGGGAAAGGATTACTA
Found at i:33543488 original size:40 final size:39
Alignment explanation
Indices: 33543390--33543652 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
33543380 TCCTCGTTCA
* * * *
33543390 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
33543429 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33543468 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
33543508 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
33543548 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
33543588 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
33543629 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33543653 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:33543612 original size:120 final size:119
Alignment explanation
Indices: 33543390--33543652 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
33543380 TCCTCGTTCA
* * *
33543390 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
33543455 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
33543508 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
33543573 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
33543629 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
33543653 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:33543661 original size:41 final size:41
Alignment explanation
Indices: 33543584--33543661 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
33543574 TTTGTATCTC
* * *
33543584 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
33543625 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
33543662 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:33551472 original size:40 final size:40
Alignment explanation
Indices: 33551374--33551636 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 40
33551364 TCCTCGTTCA
* * * *
33551374 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
*
33551413 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* *
33551453 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* *
33551493 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * *
33551533 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * * * *
33551573 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCA-CACG
* *
33551613 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
33551637 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 39 0.20
40 154 0.77
41 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
Found at i:33567821 original size:17 final size:17
Alignment explanation
Indices: 33567801--33567834 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
33567791 CTAATTAATC
33567801 TAAACAAGAAATAGTTT
1 TAAACAAGAAATAGTTT
33567818 TAAACAAGAAATAGTTT
1 TAAACAAGAAATAGTTT
33567835 GACTAAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (17 bp):
TAAACAAGAAATAGTTT
Found at i:33581147 original size:159 final size:159
Alignment explanation
Indices: 33580857--33581181 Score: 569
Period size: 159 Copynumber: 2.0 Consensus size: 159
33580847 TTGCTAGGAA
* *
33580857 AGGTCTCCCAAGTATGATTGGAACCTTTTTATCAACCTCACATTCCAAAATAATAAAAGCTGCTA
1 AGGTCTCCCAAGTATGATTGGAACCTCTTTATCAACCTCACATTCCAAAATAATAAAAGCTACTA
* *
33580922 GAAAAATAAATTTGTCAACTCTTACCAACACATCTTCTATTTTACCTTCTGGATGTGCATACGAA
66 GAAAAATAAATTTGTCAACCCTTACCAACACATCTTCTATTTTACCTTCTGGAGGTGCATACGAA
*
33580987 TGATTAGTTAATTGCAATGTGATAGTTGT
131 TGATTAGCTAATTGCAATGTGATAGTTGT
* * *
33581016 AGGTCTCCCAAGTATGATTGGTACCTCTTTATCAACCTCACATTCCAAAATAATAAAAGTTACTG
1 AGGTCTCCCAAGTATGATTGGAACCTCTTTATCAACCTCACATTCCAAAATAATAAAAGCTACTA
*
33581081 GAAAAATAAATTTGTCAACCCTTACCAACACATCTTCTATTTTACCTTCTGGAGGTGCATATGAA
66 GAAAAATAAATTTGTCAACCCTTACCAACACATCTTCTATTTTACCTTCTGGAGGTGCATACGAA
33581146 TGATTAGCTAATTGCAATGTGATAGTTGT
131 TGATTAGCTAATTGCAATGTGATAGTTGT
33581175 AGGTCTC
1 AGGTCTC
33581182 ACTTTCCCTA
Statistics
Matches: 157, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
159 157 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (159 bp):
AGGTCTCCCAAGTATGATTGGAACCTCTTTATCAACCTCACATTCCAAAATAATAAAAGCTACTA
GAAAAATAAATTTGTCAACCCTTACCAACACATCTTCTATTTTACCTTCTGGAGGTGCATACGAA
TGATTAGCTAATTGCAATGTGATAGTTGT
Found at i:33617453 original size:93 final size:93
Alignment explanation
Indices: 33617289--33618475 Score: 2052
Period size: 93 Copynumber: 12.8 Consensus size: 93
33617279 NNNNNNNNNN
* * *
33617289 TAAATGCTGTCCAATTTTGCATATACATGCTTTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
* * *
33617354 TATATGTATGCTGCCCAATTTTGGTGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
*
33617382 TAGATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
33617447 TGTATGTATGCTGCACAATTTTGGCGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
33617475 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
33617540 TGTATGTATGCTGCACAATTTTGGCGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
33617568 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
33617633 TGTATGTATGCTGCACAATTTTGGCGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
33617661 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
33617726 TGTATGTATGCTGCACAATTTTGGCGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
33617754 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
33617819 TGTATGTATGCTGCACAATTTTGGCGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
33617847 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
33617912 TGTATGTATGCTGCACAATTTTGGCGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
33617940 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
33618005 TGTATGTATGCTGCACAATTTTGGCGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
33618033 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
33618098 TGTATGTATGCTGCACAATTTTGGCGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
33618126 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
*
33618191 TGTATGTATGCTGCACAATTTTGGTGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
* * *
33618219 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCAAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
* * * *
33618284 TATATGTATGCTGCCCAGTTTTGGTGAA
66 TGTATGTATGCTGCACAATTTTGGCGAA
* * * * * * * * *
33618312 TAAATGTTGTCCAATTTTGCTTATACATGCTGTTAAGTTTTGTATATAAGTGTTGTCCAAATTAG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
* * **
33618377 TATATATATGCTGC-CTAATTTTGGTTAA
66 TGTATGTATGCTGCAC-AATTTTGGCGAA
* * * * *
33618405 TAAATGTTGTCCAATTTTGTATATACATGCTGTCAAATTTTGGTGTATAAATGCTGTCCAATTTT
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTT-TTGTATAAATGCTGTCCAAATTG
33618470 GTGTAT
65 GTGTAT
33618476 ATATATATGC
Statistics
Matches: 1056, Mismatches: 36, Indels: 3
0.96 0.03 0.00
Matches are distributed among these distances:
92 1 0.00
93 1032 0.98
94 23 0.02
ACGTcount: A:0.28, C:0.14, G:0.18, T:0.40
Consensus pattern (93 bp):
TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTTTGTATAAATGCTGTCCAAATTGG
TGTATGTATGCTGCACAATTTTGGCGAA
Found at i:33635943 original size:12 final size:12
Alignment explanation
Indices: 33635926--33635952 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
33635916 ATTCCGAAGT
33635926 ATATATATATAC
1 ATATATATATAC
33635938 ATATATATATAC
1 ATATATATATAC
33635950 ATA
1 ATA
33635953 AGTATGCCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:33636483 original size:27 final size:28
Alignment explanation
Indices: 33636399--33636496 Score: 117
Period size: 27 Copynumber: 3.5 Consensus size: 28
33636389 CATGAGATTG
* * * *
33636399 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
33636428 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
33636456 GCACTAAGTGTGTGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
33636483 GCATTGAGTGTGCG
1 GCACTAAGTGTGCG
33636497 GACTTAATAT
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 22 0.36
28 21 0.34
29 18 0.30
ACGTcount: A:0.27, C:0.11, G:0.29, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:33636494 original size:25 final size:27
Alignment explanation
Indices: 33636427--33636485 Score: 82
Period size: 28 Copynumber: 2.1 Consensus size: 27
33636417 TAAATTGTAC
* *
33636427 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGAGTGTGAG-TTGATTATAT
*
33636455 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGAGTGTGAGTTGATTATAT
33636482 AGCA
1 AGCA
33636486 TTGAGTGTGC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 14 0.47
28 16 0.53
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (27 bp):
AGCACTAAGAGTGTGAGTTGATTATAT
Found at i:33637110 original size:71 final size:71
Alignment explanation
Indices: 33637019--33637159 Score: 221
Period size: 71 Copynumber: 2.0 Consensus size: 71
33637009 GCCGTCATCG
* * *
33637019 GAAGTCATCACAGCAGCTAGCAAGTTTTGGTA-CTTTCTTCTTAGTCGGTTTAGGAGAACATTTC
1 GAAGTCATCACACCAGCTAGCAACTTTTGGTATC-TTCTTCTTAGTCGGTCTAGGAGAACATTTC
33637083 GGCATGC
65 GGCATGC
* *
33637090 GAAGTCATCACACCGGCTAGCAACTTTTGGTATCTTCTTTTTAGTCGGTCTAGGAGAACATTTCG
1 GAAGTCATCACACCAGCTAGCAACTTTTGGTATCTTCTTCTTAGTCGGTCTAGGAGAACATTTCG
33637155 GCATG
66 GCATG
33637160 TATAGGCTAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
71 63 0.98
72 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (71 bp):
GAAGTCATCACACCAGCTAGCAACTTTTGGTATCTTCTTCTTAGTCGGTCTAGGAGAACATTTCG
GCATGC
Found at i:33638464 original size:23 final size:23
Alignment explanation
Indices: 33638438--33638878 Score: 292
Period size: 23 Copynumber: 19.0 Consensus size: 23
33638428 TTATGCTTAA
*
33638438 ATGCTGTCCAATTTTGCATATAC
1 ATGCTGTCCAATTTTGTATATAC
* *
33638461 ATGCTGTCAAATTTTGTGTATA-
1 ATGCTGTCCAATTTTGTATATAC
* * **
33638483 AGTGCTGTCCAAATTGGTATATGT
1 A-TGCTGTCCAATTTTGTATATAC
* *
33638507 ATGCTGCCCAATTTTGGTGA-ATAG
1 ATGCTGTCCAATTTT-GT-ATATAC
*
33638531 ATGCTGTCCAATTTTGCATATAC
1 ATGCTGTCCAATTTTGTATATAC
* * *
33638554 GTGCTGTCAAATTTTGTGTATA-
1 ATGCTGTCCAATTTTGTATATAC
* * * **
33638576 AGTGCTGTCCAAATTGGTGTATGT
1 A-TGCTGTCCAATTTTGTATATAC
*
33638600 ATGCTG-CACAATTTTGGTGA-ATAA
1 ATGCTGTC-CAATTTT-GT-ATATAC
*
33638624 ATGCTGTCCAATTTTGCATATAC
1 ATGCTGTCCAATTTTGTATATAC
* *
33638647 ATGCTGTCAAATTTTGTGTATA-
1 ATGCTGTCCAATTTTGTATATAC
* * **
33638669 AGTGCTGTCCAAATTGGTATATGT
1 A-TGCTGTCCAATTTTGTATATAC
* * *
33638693 ATGCTGCCCAGTTTTGGTGA-ATAA
1 ATGCTGTCCAATTTT-GT-ATATAC
*
33638717 ATGTTGTCCAATTTTGCT-TATAC
1 ATGCTGTCCAATTTTG-TATATAC
**
33638740 ATGCTGTTAAATTTTGTATATA-
1 ATGCTGTCCAATTTTGTATATAC
* * *
33638762 AGTGCTGTCCAAATTAGTATATAT
1 A-TGCTGTCCAATTTTGTATATAC
*
33638786 ATGCTG-CCTAATTTTGGT-TAATAA
1 ATGCTGTCC-AATTTT-GTAT-ATAC
*
33638810 ATGTTGTCCAATTTTGTATATAC
1 ATGCTGTCCAATTTTGTATATAC
* * *
33638833 ATGCTGTCAAATTTTGGTGTATAA
1 ATGCTGTCCAATTTT-GTATATAC
*
33638857 ATGCTGTCCAATTTTGTGTATA
1 ATGCTGTCCAATTTTGTATATA
33638879 TATATATGCT
Statistics
Matches: 324, Mismatches: 67, Indels: 54
0.73 0.15 0.12
Matches are distributed among these distances:
22 9 0.03
23 217 0.67
24 93 0.29
25 5 0.02
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.41
Consensus pattern (23 bp):
ATGCTGTCCAATTTTGTATATAC
Found at i:33638582 original size:93 final size:93
Alignment explanation
Indices: 33638435--33638867 Score: 713
Period size: 93 Copynumber: 4.6 Consensus size: 93
33638425 TTTTTATGCT
33638435 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
33638500 TATATGTATGCTGCCCAATTTTGGTGAA
66 TATATGTATGCTGCCCAATTTTGGTGAA
* *
33638528 TAGATGCTGTCCAATTTTGCATATACGTGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
* *
33638593 TGTATGTATGCTGCACAATTTTGGTGAA
66 TATATGTATGCTGCCCAATTTTGGTGAA
33638621 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
*
33638686 TATATGTATGCTGCCCAGTTTTGGTGAA
66 TATATGTATGCTGCCCAATTTTGGTGAA
* * * * *
33638714 TAAATGTTGTCCAATTTTGCTTATACATGCTGTTAAATTTTGTATATAAGTGCTGTCCAAATTAG
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
* * *
33638779 TATATATATGCTGCCTAATTTTGGTTAA
66 TATATGTATGCTGCCCAATTTTGGTGAA
* * *
33638807 TAAATGTTGTCCAATTTTGTATATACATGCTGTCAAATTTTGGTGTATAAATGCTGTCCAA
1 TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTT-GTGTATAAGTGCTGTCCAA
33638868 TTTTGTGTAT
Statistics
Matches: 316, Mismatches: 23, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
93 299 0.95
94 17 0.05
ACGTcount: A:0.27, C:0.14, G:0.19, T:0.40
Consensus pattern (93 bp):
TAAATGCTGTCCAATTTTGCATATACATGCTGTCAAATTTTGTGTATAAGTGCTGTCCAAATTGG
TATATGTATGCTGCCCAATTTTGGTGAA
Found at i:33645631 original size:44 final size:43
Alignment explanation
Indices: 33645485--33645693 Score: 212
Period size: 43 Copynumber: 4.9 Consensus size: 43
33645475 AAAGCTCTTA
* * * *
33645485 CAATGCCAACGTCCTAGACATGGTCTTACATGTAA--TCAACTAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCTCAA--AT
* * * *
33645528 CGATGCC-ACTGTCCCAGATGGGGTCTTACACGAAA--TCATAT
1 CAATGCCAAC-GTCCCAGACGTGGTCTTACACGAAATCTCAAAT
* ** *
33645569 ACGATGCCAATTTCCCAGACATGGTCTTACACGTAAATCTCAAAT
1 -CAATGCCAACGTCCCAGACGTGGTCTTACACG-AAATCTCAAAT
*
33645614 CAATGCCAACGTTCCAGACGTGGTCTTACACGAAATCTCAAAT
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCTCAAAT
*
33645657 CGATGCCAACGTCCCAGACGTGGTCTTACACGAAATC
1 CAATGCCAACGTCCCAGACGTGGTCTTACACGAAATC
33645694 ACATATTGGA
Statistics
Matches: 139, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.01
42 27 0.19
43 78 0.56
44 27 0.19
45 5 0.04
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (43 bp):
CAATGCCAACGTCCCAGACGTGGTCTTACACGAAATCTCAAAT
Found at i:33650801 original size:6 final size:6
Alignment explanation
Indices: 33650790--33650824 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
33650780 TAATTCCATA
* *
33650790 AATTTT AATTTT AATTTT AGTTTT AATTTT TATTT
1 AATTTT AATTTT AATTTT AATTTT AATTTT AATTT
33650825 ATAGTTTATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (6 bp):
AATTTT
Found at i:33650813 original size:18 final size:19
Alignment explanation
Indices: 33650792--33650831 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
33650782 ATTCCATAAA
33650792 TTTTAATTTTAATTT-TAG
1 TTTTAATTTTAATTTATAG
*
33650810 TTTTAATTTTTATTTATAG
1 TTTTAATTTTAATTTATAG
33650829 TTT
1 TTT
33650832 ATATGTTTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 14 0.70
19 6 0.30
ACGTcount: A:0.25, C:0.00, G:0.05, T:0.70
Consensus pattern (19 bp):
TTTTAATTTTAATTTATAG
Found at i:33659777 original size:154 final size:154
Alignment explanation
Indices: 33659497--33659808 Score: 500
Period size: 154 Copynumber: 2.0 Consensus size: 154
33659487 ATCATGAAAC
* *
33659497 TCTTAATACTAATAGCCTTAATAGGTATATGTTATTTGTAAATTTATATTTCTTAGTAAAGTTAG
1 TCTTAATACTAATAGCCTTAACAAGTATATGTTATTTGTAAATTTATATTTCTTAGTAAAGTTAG
* * *
33659562 TGAAATAATTAGAATACAATTAACATGTCAATAGAGATTAGATGTAAAATTCTATATGATTTGGA
66 TGAAATAATTAGAATAAAATTAACATGTCAATAGAAATTAGATGTAAAATTCTATATGATTTGAA
*
33659627 GTTATATTGTCTTCGAATTTTGCA
131 GTTATATTATCTTCGAATTTTGCA
*
33659651 TCTTAATACTAATAGCCTTAACAAGTATATGTTATTTGTAAATTTATATTTCTTAGTAAAGTTAT
1 TCTTAATACTAATAGCCTTAACAAGTATATGTTATTTGTAAATTTATATTTCTTAGTAAAGTTAG
* **
33659716 TGAAATAGTTACG-ATAAAATTAACATGTCAATAGAAATTAGATGTGGAATTCTATATGATTTGA
66 TGAAATAATTA-GAATAAAATTAACATGTCAATAGAAATTAGATGTAAAATTCTATATGATTTGA
**
33659780 AGTTATATTATCTTCGTGTTTTGCA
130 AGTTATATTATCTTCGAATTTTGCA
33659805 TCTT
1 TCTT
33659809 TTGTGTGTAC
Statistics
Matches: 145, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
154 144 0.99
155 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.14, T:0.42
Consensus pattern (154 bp):
TCTTAATACTAATAGCCTTAACAAGTATATGTTATTTGTAAATTTATATTTCTTAGTAAAGTTAG
TGAAATAATTAGAATAAAATTAACATGTCAATAGAAATTAGATGTAAAATTCTATATGATTTGAA
GTTATATTATCTTCGAATTTTGCA
Found at i:33661359 original size:24 final size:24
Alignment explanation
Indices: 33661324--33661369 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
33661314 CGGGGAGGAA
*
33661324 GGATATATTGAATTTCATTTTTGT
1 GGATATATTGAATTCCATTTTTGT
33661348 GGATGATA-TGAATTCCATTTTT
1 GGAT-ATATTGAATTCCATTTTT
33661370 TCTTTTCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.26, C:0.07, G:0.17, T:0.50
Consensus pattern (24 bp):
GGATATATTGAATTCCATTTTTGT
Found at i:33665815 original size:31 final size:31
Alignment explanation
Indices: 33665744--33665816 Score: 78
Period size: 31 Copynumber: 2.4 Consensus size: 31
33665734 ATTCTATTAA
33665744 TTTAATTTT-AAATTTAAAAAATTCAATAAG
1 TTTAATTTTCAAATTTAAAAAATTCAATAAG
* * * * *
33665774 TTTAACTTTCAATATTTACAAAA-TCTATCAT
1 TTTAATTTTCAA-ATTTAAAAAATTCAATAAG
33665805 TTTAATTTTCAA
1 TTTAATTTTCAA
33665817 GTTTTTAAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
30 8 0.23
31 18 0.51
32 9 0.26
ACGTcount: A:0.42, C:0.10, G:0.01, T:0.47
Consensus pattern (31 bp):
TTTAATTTTCAAATTTAAAAAATTCAATAAG
Found at i:33670874 original size:12 final size:12
Alignment explanation
Indices: 33670849--33670887 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
33670839 ACTCGCTTCT
* *
33670849 TTACTTACTCAC
1 TTACTTGCTTAC
*
33670861 TTACTTGTTTAC
1 TTACTTGCTTAC
33670873 TTACTTGCTTAC
1 TTACTTGCTTAC
33670885 TTA
1 TTA
33670888 AATAATTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:33671203 original size:50 final size:49
Alignment explanation
Indices: 33671135--33671276 Score: 169
Period size: 49 Copynumber: 2.9 Consensus size: 49
33671125 TTTTCTGTAC
* * *
33671135 TGCCAATGCCATATCCCAAATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA-CTCTCATATCGG
* * ** *
33671185 TGCCCATGCCATGTCCCAAACATAGTCTTACGGGGGACTCTCATCTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTCTCATATCGG
** *
33671234 TGCCAACACCATGTCCCAGACATGGTCTTACATGGGA-TCTCAT
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTCTCAT
33671277 TCCCTTAATG
Statistics
Matches: 77, Mismatches: 15, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
48 6 0.08
49 40 0.52
50 31 0.40
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTCTCATATCGG
Found at i:33671645 original size:30 final size:30
Alignment explanation
Indices: 33671611--33671669 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
33671601 TCCTTGACTC
33671611 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * *
33671641 AAACTTTTGCATAATTACACTTTTGCCCC
1 AAACTTTGGAAAAATTACAATTTTGCCCC
33671670 AATGCTCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:33676074 original size:48 final size:48
Alignment explanation
Indices: 33676003--33676196 Score: 237
Period size: 48 Copynumber: 4.0 Consensus size: 48
33675993 TACTATGCGT
* *
33676003 ACCGATAATCTGTTATGACACAAGGGTGGCACGGGCTGTGTGCAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACAGACTGTGTGCAGGCC
* * * *
33676051 ACCGATATTCTATTGTGACACAAGGGTGGCACAGACTGTGTGTAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACAGACTGTGTGCAGGCC
* * * * *
33676099 ACCAATAA-CTTGTTAAGATACAAGGGTGGCATAGACTATGTGCAGGCC
1 ACCGATAATC-TGTTATGACACAAGGGTGGCACAGACTGTGTGCAGGCC
* * * *
33676147 ACCGAGAATCTGTTATTACACAAAGGTGGCACGGACTGTGTGCAGGCC
1 ACCGATAATCTGTTATGACACAAGGGTGGCACAGACTGTGTGCAGGCC
33676195 AC
1 AC
33676197 TGAGAAATCT
Statistics
Matches: 120, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
47 1 0.01
48 118 0.98
49 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (48 bp):
ACCGATAATCTGTTATGACACAAGGGTGGCACAGACTGTGTGCAGGCC
Found at i:33684763 original size:10 final size:10
Alignment explanation
Indices: 33684748--33684772 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
33684738 CTAGTATTTA
33684748 TCCTCCTACG
1 TCCTCCTACG
33684758 TCCTCCTACG
1 TCCTCCTACG
33684768 TCCTC
1 TCCTC
33684773 TTCTTCAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.52, G:0.08, T:0.32
Consensus pattern (10 bp):
TCCTCCTACG
Found at i:33692660 original size:41 final size:41
Alignment explanation
Indices: 33692614--33692692 Score: 122
Period size: 41 Copynumber: 1.9 Consensus size: 41
33692604 AATATTTTTG
*
33692614 AATTGCACATACGTGCCTCTATTTGTACTTCAGTACCCCTA
1 AATTGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTA
* * *
33692655 AATTGCACATATGTGCCCCTCTTTGTACTTCGGTACCC
1 AATTGCACATACGTGCCCCTATTTGTACTTCAGTACCC
33692693 TTGAATATAC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.22, C:0.30, G:0.14, T:0.34
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTATTTGTACTTCAGTACCCCTA
Found at i:33701579 original size:315 final size:315
Alignment explanation
Indices: 33701007--33701633 Score: 1254
Period size: 315 Copynumber: 2.0 Consensus size: 315
33700997 TGTGTTTCAC
33701007 GTATCAATGTTATGACGGTATTGATCAGACCCTTCACATGTCATCTCTCCAGCGGATGTTCAGAT
1 GTATCAATGTTATGACGGTATTGATCAGACCCTTCACATGTCATCTCTCCAGCGGATGTTCAGAT
33701072 TCAACCTGATATGTCGTATAGCGAAGAACCGATAGAGAGAGGTTAAAGAATTACGAAATAAAATC
66 TCAACCTGATATGTCGTATAGCGAAGAACCGATAGAGAGAGGTTAAAGAATTACGAAATAAAATC
33701137 ATAGCTTTAGTAAAAGTTCTCTGGCAATGACACGGGATAGAGGAGGCCACTTAGGAACCGAAAGA
131 ATAGCTTTAGTAAAAGTTCTCTGGCAATGACACGGGATAGAGGAGGCCACTTAGGAACCGAAAGA
33701202 AACTATGAGAAAACAATATCCAAACCTCTTTTTTGGTAAGATTTTTGGGGACGAAAATTCCTTTA
196 AACTATGAGAAAACAATATCCAAACCTCTTTTTTGGTAAGATTTTTGGGGACGAAAATTCCTTTA
33701267 GTGGGAAGAGTTGTAACAACCTCTTTTTAGTGAAATCAGAACAGTGGTTTTGACG
261 GTGGGAAGAGTTGTAACAACCTCTTTTTAGTGAAATCAGAACAGTGGTTTTGACG
33701322 GTATCAATGTTATGACGGTATTGATCAGACCCTTCACATGTCATCTCTCCAGCGGATGTTCAGAT
1 GTATCAATGTTATGACGGTATTGATCAGACCCTTCACATGTCATCTCTCCAGCGGATGTTCAGAT
33701387 TCAACCTGATATGTCGTATAGCGAAGAACCGATAGAGAGAGGTTAAAGAATTACGAAATAAAATC
66 TCAACCTGATATGTCGTATAGCGAAGAACCGATAGAGAGAGGTTAAAGAATTACGAAATAAAATC
33701452 ATAGCTTTAGTAAAAGTTCTCTGGCAATGACACGGGATAGAGGAGGCCACTTAGGAACCGAAAGA
131 ATAGCTTTAGTAAAAGTTCTCTGGCAATGACACGGGATAGAGGAGGCCACTTAGGAACCGAAAGA
33701517 AACTATGAGAAAACAATATCCAAACCTCTTTTTTGGTAAGATTTTTGGGGACGAAAATTCCTTTA
196 AACTATGAGAAAACAATATCCAAACCTCTTTTTTGGTAAGATTTTTGGGGACGAAAATTCCTTTA
33701582 GTGGGAAGAGTTGTAACAACCTCTTTTTAGTGAAATCAGAACAGTGGTTTTG
261 GTGGGAAGAGTTGTAACAACCTCTTTTTAGTGAAATCAGAACAGTGGTTTTG
33701634 GAACCACTTA
Statistics
Matches: 312, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
315 312 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (315 bp):
GTATCAATGTTATGACGGTATTGATCAGACCCTTCACATGTCATCTCTCCAGCGGATGTTCAGAT
TCAACCTGATATGTCGTATAGCGAAGAACCGATAGAGAGAGGTTAAAGAATTACGAAATAAAATC
ATAGCTTTAGTAAAAGTTCTCTGGCAATGACACGGGATAGAGGAGGCCACTTAGGAACCGAAAGA
AACTATGAGAAAACAATATCCAAACCTCTTTTTTGGTAAGATTTTTGGGGACGAAAATTCCTTTA
GTGGGAAGAGTTGTAACAACCTCTTTTTAGTGAAATCAGAACAGTGGTTTTGACG
Found at i:33702289 original size:30 final size:30
Alignment explanation
Indices: 33702253--33702569 Score: 252
Period size: 30 Copynumber: 10.6 Consensus size: 30
33702243 GTATCAATGA
* *
33702253 CCATCGAATTATGAAAAAGGATAGCTTCGT
1 CCATCGAATTATGAAAAGGGATAGCTTCGG
*
33702283 CCATCGAATTATGAAAAGGGATTGCTTCGG
1 CCATCGAATTATGAAAAGGGATAGCTTCGG
* * * * * *
33702313 CTATTGAATTGTGAAAAGAGATAACTTTGG
1 CCATCGAATTATGAAAAGGGATAGCTTCGG
* * * * *
33702343 CTATTGAACTATGAAAAGGGAT-GGTAAT-GA
1 CCATCGAATTATGAAAAGGGATAGCT--TCGG
*
33702373 CCATCGAATTATGAAAAGGGATAGCTTTGG
1 CCATCGAATTATGAAAAGGGATAGCTTCGG
* * *
33702403 CTATCAAATTATGCAAAGGGATAGCTTCGG
1 CCATCGAATTATGAAAAGGGATAGCTTCGG
* * *
33702433 TCATCGAATTATGAAAAGGGAT-G-GT-GA
1 CCATCGAATTATGAAAAGGGATAGCTTCGG
* * * * * **
33702460 CCATCATCAACTATGGAAAGGGAT-GGTGACTA
1 CCATC--GAATTATGAAAAGGGATAGCT-TCGG
*
33702492 CCATCGAATTATGAAAAGGGATAGCTTTGG
1 CCATCGAATTATGAAAAGGGATAGCTTCGG
* *
33702522 CTATCGAATTATGAAAAGGGATAGCTTCGA
1 CCATCGAATTATGAAAAGGGATAGCTTCGG
*
33702552 CTATCG-ATTATGAAAAGG
1 CCATCGAATTATGAAAAGG
33702570 AATGGTGATA
Statistics
Matches: 228, Mismatches: 49, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
27 5 0.02
28 1 0.00
29 30 0.13
30 181 0.79
31 5 0.02
32 6 0.03
ACGTcount: A:0.35, C:0.13, G:0.25, T:0.27
Consensus pattern (30 bp):
CCATCGAATTATGAAAAGGGATAGCTTCGG
Found at i:33702446 original size:90 final size:89
Alignment explanation
Indices: 33702283--33702543 Score: 278
Period size: 90 Copynumber: 2.9 Consensus size: 89
33702273 ATAGCTTCGT
* * * * * *
33702283 CCATCGAATTATGAAAAGGGATTGCTTCGGCTATTGAATTGTGAAAAGAGATAACTTTGGCTATT
1 CCATCGAATTATGAAAAGGGA-TGCTTTGGCTATCGAATTATGAAAAGGGATAGCTTTGGCTATC
* **
33702348 GAACTATGAAAAGGGATGGTAATGA
65 GAATTATGAAAAGGGATGGTAACCA
* * *
33702373 CCATCGAATTATGAAAAGGGATAGCTTTGGCTATCAAATTATGCAAAGGGATAGCTTCGG-TCAT
1 CCATCGAATTATGAAAAGGGAT-GCTTTGGCTATCGAATTATGAAAAGGGATAGCTTTGGCT-AT
*
33702437 CGAATTATGAAAAGGGATGGTGACCA
64 CGAATTATGAAAAGGGATGGTAACCA
* * * * *
33702463 TCATC-AACTATGGAAAGGGATG--GTGACTACCATCGAATTATGAAAAGGGATAGCTTTGGCTA
1 CCATCGAATTATGAAAAGGGATGCTTTGGCT---ATCGAATTATGAAAAGGGATAGCTTTGGCTA
33702525 TCGAATTATGAAAAGGGAT
63 TCGAATTATGAAAAGGGAT
33702544 AGCTTCGACT
Statistics
Matches: 144, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
86 4 0.03
88 1 0.01
89 61 0.42
90 78 0.54
ACGTcount: A:0.35, C:0.12, G:0.26, T:0.27
Consensus pattern (89 bp):
CCATCGAATTATGAAAAGGGATGCTTTGGCTATCGAATTATGAAAAGGGATAGCTTTGGCTATCG
AATTATGAAAAGGGATGGTAACCA
Found at i:33702484 original size:29 final size:30
Alignment explanation
Indices: 33702433--33702513 Score: 119
Period size: 29 Copynumber: 2.7 Consensus size: 30
33702423 ATAGCTTCGG
33702433 TCATCGAATTATGAAAAGGGATGGTGACCA
1 TCATCGAATTATGAAAAGGGATGGTGACCA
* * *
33702463 TCATC-AACTATGGAAAGGGATGGTGACTA
1 TCATCGAATTATGAAAAGGGATGGTGACCA
*
33702492 CCATCGAATTATGAAAAGGGAT
1 TCATCGAATTATGAAAAGGGAT
33702514 AGCTTTGGCT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
29 25 0.57
30 19 0.43
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (30 bp):
TCATCGAATTATGAAAAGGGATGGTGACCA
Found at i:33702509 original size:119 final size:117
Alignment explanation
Indices: 33702248--33702577 Score: 405
Period size: 119 Copynumber: 2.8 Consensus size: 117
33702238 ATGGCGTATC
* * * * *
33702248 AATGACCATCGAATTATGAAAAAGGATAGCTTCGTCCATCGAATTATGAAAAGGGATTGCTTCGG
1 AATGACCATCGAATTATGAAAAGGGATAGCTTTGGCTATCGAATTATGAAAAGGGATAGCTTCGG
* * * ** * * *
33702313 CTATTGAATTGTGAAAAGAGATAACTTTGGCTATTGAACTATGAAAAGGGATGGT
66 CTATCGAATTATGAAAAGGGAT---GGTGACCATTCAACTATGAAAAGGGATGGT
* *
33702368 AATGACCATCGAATTATGAAAAGGGATAGCTTTGGCTATCAAATTATGCAAAGGGATAGCTTCGG
1 AATGACCATCGAATTATGAAAAGGGATAGCTTTGGCTATCGAATTATGAAAAGGGATAGCTTCGG
*
33702433 -TCATCGAATTATGAAAAGGGATGGTGACCATCATCAACTATGGAAAGGGATGGT
66 CT-ATCGAATTATGAAAAGGGATGGTGACCAT--TCAACTATGAAAAGGGATGGT
*
33702487 GACT-ACCATCGAATTATGAAAAGGGATAGCTTTGGCTATCGAATTATGAAAAGGGATAGCTTCG
1 -AATGACCATCGAATTATGAAAAGGGATAGCTTTGGCTATCGAATTATGAAAAGGGATAGCTTCG
* *
33702551 ACTATCG-ATTATGAAAAGGAATGGTGA
65 GCTATCGAATTATGAAAAGGGATGGTGA
33702578 TAATTATCAT
Statistics
Matches: 184, Mismatches: 21, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
117 5 0.03
118 19 0.10
119 82 0.45
120 78 0.42
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (117 bp):
AATGACCATCGAATTATGAAAAGGGATAGCTTTGGCTATCGAATTATGAAAAGGGATAGCTTCGG
CTATCGAATTATGAAAAGGGATGGTGACCATTCAACTATGAAAAGGGATGGT
Found at i:33708175 original size:22 final size:22
Alignment explanation
Indices: 33708144--33708208 Score: 94
Period size: 22 Copynumber: 2.9 Consensus size: 22
33708134 ACCTTTTTGA
*
33708144 ACCATTACCAATTCGTACCAAAT
1 ACCA-TACCATTTCGTACCAAAT
*
33708167 ACCATACCATTTCGTACCAACT
1 ACCATACCATTTCGTACCAAAT
*
33708189 TCCATACCATTTCGTACCAA
1 ACCATACCATTTCGTACCAA
33708209 TTCCTAAATA
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
22 35 0.90
23 4 0.10
ACGTcount: A:0.34, C:0.34, G:0.05, T:0.28
Consensus pattern (22 bp):
ACCATACCATTTCGTACCAAAT
Found at i:33708529 original size:10 final size:10
Alignment explanation
Indices: 33708514--33708574 Score: 63
Period size: 10 Copynumber: 6.0 Consensus size: 10
33708504 AGACTCGTGA
33708514 AAAAAAATTG
1 AAAAAAATTG
33708524 AAAAAAAATTG
1 -AAAAAAATTG
**
33708535 AAAAAAAAATAA
1 --AAAAAAATTG
33708547 AAAAAAATTG
1 AAAAAAATTG
33708557 AAAAAAA--G
1 AAAAAAATTG
33708565 AAAAAAATTG
1 AAAAAAATTG
33708575 TATACGGTCT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
8 8 0.19
10 16 0.37
11 10 0.23
12 9 0.21
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (10 bp):
AAAAAAATTG
Found at i:33708539 original size:22 final size:22
Alignment explanation
Indices: 33708511--33708571 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
33708501 AGTAGACTCG
* *
33708511 TGAAAAAAAATTGAAAAAAAAT
1 TGAAAAAAAAATAAAAAAAAAT
33708533 TGAAAAAAAAATAAAAAAAAAT
1 TGAAAAAAAAATAAAAAAAAAT
*
33708555 TGAAAAAAAGA-AAAAAA
1 TGAAAAAAAAATAAAAAA
33708572 TTGTATACGG
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
21 6 0.17
22 30 0.83
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (22 bp):
TGAAAAAAAAATAAAAAAAAAT
Found at i:33708571 original size:11 final size:11
Alignment explanation
Indices: 33708511--33708563 Score: 88
Period size: 11 Copynumber: 4.8 Consensus size: 11
33708501 AGTAGACTCG
33708511 TGAAAAAAAAT
1 TGAAAAAAAAT
33708522 TGAAAAAAAAT
1 TGAAAAAAAAT
*
33708533 TGAAAAAAAAA
1 TGAAAAAAAAT
*
33708544 TAAAAAAAAAT
1 TGAAAAAAAAT
33708555 TGAAAAAAA
1 TGAAAAAAA
33708564 GAAAAAAATT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 38 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (11 bp):
TGAAAAAAAAT
Found at i:33710821 original size:20 final size:19
Alignment explanation
Indices: 33710796--33710883 Score: 74
Period size: 19 Copynumber: 4.5 Consensus size: 19
33710786 GCGAAAATAC
33710796 AAAAGAAAAGAAAAATGAAA
1 AAAAGAAAAGAAAAA-GAAA
33710816 AAAAG-AAAGAAAATTCA-AAA
1 AAAAGAAAAGAAAA---AGAAA
33710836 AAAAGAAAATG-AAAAGAAA
1 AAAAGAAAA-GAAAAAGAAA
** *
33710855 GCAAGAAAAGAAAAAGATGA
1 AAAAGAAAAGAAAAAGA-AA
33710875 AAAAGAAAA
1 AAAAGAAAA
33710884 AGTGAGTGAA
Statistics
Matches: 55, Mismatches: 5, Indels: 16
0.72 0.07 0.21
Matches are distributed among these distances:
18 2 0.04
19 24 0.44
20 21 0.38
21 6 0.11
22 2 0.04
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.06
Consensus pattern (19 bp):
AAAAGAAAAGAAAAAGAAA
Done.