Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 119 of 182
Found at i:36459907 original size:33 final size:33
Alignment explanation
Indices: 36459823--36459893 Score: 117
Period size: 33 Copynumber: 2.2 Consensus size: 33
36459813 GGCGACTTTG
36459823 AGCTCATCGGCCTTT-TTGGAAGCTTCAAGAGCA
1 AGCTCATCGG-CTTTCTTGGAAGCTTCAAGAGCA
*
36459856 AGCTCATCGGCTTTCTTGGAGGCTTCAAGAGCA
1 AGCTCATCGGCTTTCTTGGAAGCTTCAAGAGCA
36459889 AGCTC
1 AGCTC
36459894 CTTGGACTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 4 0.11
33 32 0.89
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (33 bp):
AGCTCATCGGCTTTCTTGGAAGCTTCAAGAGCA
Found at i:36467249 original size:45 final size:45
Alignment explanation
Indices: 36467175--36467285 Score: 141
Period size: 45 Copynumber: 2.5 Consensus size: 45
36467165 TACTACGTGT
* * * *
36467175 ACCGGGTACCATTGATTATAAAAGTGGTTGTTGTGTGCTGATTCC
1 ACCGAGTACCATTGATTATAAAAGTGGTTGCTATGTGCTAATTCC
* * *
36467220 ACCGAGTACTATTGATTATGAAGGTGGTTGCTATGTGCTAATTCC
1 ACCGAGTACCATTGATTATAAAAGTGGTTGCTATGTGCTAATTCC
* *
36467265 ACCGAGTATCATTGACTATAA
1 ACCGAGTACCATTGATTATAA
36467286 GGGTGATGCT
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.34
Consensus pattern (45 bp):
ACCGAGTACCATTGATTATAAAAGTGGTTGCTATGTGCTAATTCC
Found at i:36471297 original size:21 final size:22
Alignment explanation
Indices: 36471238--36471297 Score: 52
Period size: 23 Copynumber: 2.7 Consensus size: 22
36471228 AACATGCATA
*
36471238 TATATATATTATATAAGAAAAG
1 TATATGTATTATATAAGAAAAG
* *
36471260 -ATTATGTGAATACTATAA-AAATG
1 TA-TATGT-ATTA-TATAAGAAAAG
36471283 TATATGTATTATATA
1 TATATGTATTATATA
36471298 TTAAAAACCA
Statistics
Matches: 30, Mismatches: 4, Indels: 9
0.70 0.09 0.21
Matches are distributed among these distances:
21 5 0.17
22 7 0.23
23 12 0.40
24 6 0.20
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.40
Consensus pattern (22 bp):
TATATGTATTATATAAGAAAAG
Found at i:36477884 original size:20 final size:21
Alignment explanation
Indices: 36477861--36477901 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
36477851 ATATATGTAC
36477861 ATATATA-AGTTAT-AAAATAA
1 ATATATAGA-TTATGAAAATAA
36477881 ATATATAGATTATGAAAATAA
1 ATATATAGATTATGAAAATAA
36477902 TGATTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (21 bp):
ATATATAGATTATGAAAATAA
Found at i:36482997 original size:603 final size:603
Alignment explanation
Indices: 36481853--36483057 Score: 2347
Period size: 603 Copynumber: 2.0 Consensus size: 603
36481843 AAATACCACC
*
36481853 TCTGATAACCAGAATTCACATTTGCTGAGCTTTCCATACAACTGTTTTTCTCGCAAAATCTGTAA
1 TCTGATAACCAGAATTCACATTTGCTGAGCTTTCCATACAACTATTTTTCTCGCAAAATCTGTAA
36481918 CACAGTTCTGAGATGCTGATCATGCTCTAACTCTGACTTCGAATAAACTAATATATCATCAATGA
66 CACAGTTCTGAGATGCTGATCATGCTCTAACTCTGACTTCGAATAAACTAATATATCATCAATGA
*
36481983 AAACCACCACAAACTGATCTAAATACGGCTGAAAAATACGGTTCATCAGATCCATGAAAGCAGCT
131 AAACCACCACAAACTGATCTAAATACGGCTAAAAAATACGGTTCATCAGATCCATGAAAGCAGCT
36482048 GGAGCATTAGTCAATCCGAACGGCATCACTAAAAATTCATAATGACCATACCTTGTACGAAAAGC
196 GGAGCATTAGTCAATCCGAACGGCATCACTAAAAATTCATAATGACCATACCTTGTACGAAAAGC
36482113 TGTCTTCGGCACATCACTTTCTTTTACTTTCAACTGATAATACCCGGACCGCAAATCAATCTTCG
261 TGTCTTCGGCACATCACTTTCTTTTACTTTCAACTGATAATACCCGGACCGCAAATCAATCTTCG
36482178 AAAATACCGAAGCTCCTTTTAGCTGATCAAATAAATCATCTATACGAGGCAACGGATACCGGTTC
326 AAAATACCGAAGCTCCTTTTAGCTGATCAAATAAATCATCTATACGAGGCAACGGATACCGGTTC
36482243 TTGATTGTGACTTTGTTCAACTGCCGATAATCAATACAAAGCCGCATTGATCCATCTTTCTTTTT
391 TTGATTGTGACTTTGTTCAACTGCCGATAATCAATACAAAGCCGCATTGATCCATCTTTCTTTTT
*
36482308 AACAAACAATATCGGAGCTCCCCAAAGTGAAATACTCGGTCTAATAAATCCACGATCTAGCAAGT
456 AACAAACAATACCGGAGCTCCCCAAAGTGAAATACTCGGTCTAATAAATCCACGATCTAGCAAGT
36482373 CCTGCAACTGCACCTTCAACTCTTTTAATTCAGTGGGCGACATTCGGTACGGAGGTATAGAGATT
521 CCTGCAACTGCACCTTCAACTCTTTTAATTCAGTGGGCGACATTCGGTACGGAGGTATAGAGATT
36482438 GGTGCTGTACTCGGGTAA
586 GGTGCTGTACTCGGGTAA
* *
36482456 TCTGATAACTAGAATTCACATTTGCTGTGCTTTCCATACAACTATTTTTCTCGCAAAATCTGTAA
1 TCTGATAACCAGAATTCACATTTGCTGAGCTTTCCATACAACTATTTTTCTCGCAAAATCTGTAA
*
36482521 CACAGTTCTGAGATGCTGATCATGCTCTAACTCTGACTTCGAATAAACTAATATATTATCAATGA
66 CACAGTTCTGAGATGCTGATCATGCTCTAACTCTGACTTCGAATAAACTAATATATCATCAATGA
36482586 AAACCACCACAAACTGATCTAAATACGGCTAAAAAATACGGTTCATCAGATCCATGAAAGCAGCT
131 AAACCACCACAAACTGATCTAAATACGGCTAAAAAATACGGTTCATCAGATCCATGAAAGCAGCT
36482651 GGAGCATTAGTCAATCCGAACGGCATCACTAAAAATTCATAATGACCATACCTTGTACGAAAAGC
196 GGAGCATTAGTCAATCCGAACGGCATCACTAAAAATTCATAATGACCATACCTTGTACGAAAAGC
36482716 TGTCTTCGGCACATCACTTTCTTTTACTTTCAACTGATAATACCCGGACCGCAAATCAATCTTCG
261 TGTCTTCGGCACATCACTTTCTTTTACTTTCAACTGATAATACCCGGACCGCAAATCAATCTTCG
36482781 AAAATACCGAAGCTCCTTTTAGCTGATCAAATAAATCATCTATACGAGGCAACGGATACCGGTTC
326 AAAATACCGAAGCTCCTTTTAGCTGATCAAATAAATCATCTATACGAGGCAACGGATACCGGTTC
36482846 TTGATTGTGACTTTGTTCAACTGCCGATAATCAATACAAAGCCGCATTGATCCATCTTTCTTTTT
391 TTGATTGTGACTTTGTTCAACTGCCGATAATCAATACAAAGCCGCATTGATCCATCTTTCTTTTT
*
36482911 AACAAACAATACCGGAGCTCCCCAAGGTGAAATACTCGGTCTAATAAATCCACGATCTAGCAAGT
456 AACAAACAATACCGGAGCTCCCCAAAGTGAAATACTCGGTCTAATAAATCCACGATCTAGCAAGT
36482976 CCTGCAACTGCACCTTCAACTCTTTTAATTCAGTGGGCGACATTCGGTACGGAGGTATAGAGATT
521 CCTGCAACTGCACCTTCAACTCTTTTAATTCAGTGGGCGACATTCGGTACGGAGGTATAGAGATT
36483041 GGTGCTGTACTCGGGTA
586 GGTGCTGTACTCGGGTA
36483058 CACTTCTATA
Statistics
Matches: 595, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
603 595 1.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (603 bp):
TCTGATAACCAGAATTCACATTTGCTGAGCTTTCCATACAACTATTTTTCTCGCAAAATCTGTAA
CACAGTTCTGAGATGCTGATCATGCTCTAACTCTGACTTCGAATAAACTAATATATCATCAATGA
AAACCACCACAAACTGATCTAAATACGGCTAAAAAATACGGTTCATCAGATCCATGAAAGCAGCT
GGAGCATTAGTCAATCCGAACGGCATCACTAAAAATTCATAATGACCATACCTTGTACGAAAAGC
TGTCTTCGGCACATCACTTTCTTTTACTTTCAACTGATAATACCCGGACCGCAAATCAATCTTCG
AAAATACCGAAGCTCCTTTTAGCTGATCAAATAAATCATCTATACGAGGCAACGGATACCGGTTC
TTGATTGTGACTTTGTTCAACTGCCGATAATCAATACAAAGCCGCATTGATCCATCTTTCTTTTT
AACAAACAATACCGGAGCTCCCCAAAGTGAAATACTCGGTCTAATAAATCCACGATCTAGCAAGT
CCTGCAACTGCACCTTCAACTCTTTTAATTCAGTGGGCGACATTCGGTACGGAGGTATAGAGATT
GGTGCTGTACTCGGGTAA
Found at i:36485926 original size:23 final size:22
Alignment explanation
Indices: 36485859--36485932 Score: 100
Period size: 21 Copynumber: 3.5 Consensus size: 22
36485849 CCTGATCAGT
* *
36485859 ATACGACACA-TAAGTGCCTGA
1 ATACGACACACGAGGTGCCTGA
36485880 A-ACGACACACGAGGTGCCTG-
1 ATACGACACACGAGGTGCCTGA
36485900 ATACGACACACGAGGTGCCTGA
1 ATACGACACACGAGGTGCCTGA
36485922 TATACGACACA
1 -ATACGACACA
36485933 TAAAGTGCCT
Statistics
Matches: 47, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
20 9 0.19
21 28 0.60
23 10 0.21
ACGTcount: A:0.35, C:0.27, G:0.23, T:0.15
Consensus pattern (22 bp):
ATACGACACACGAGGTGCCTGA
Found at i:36485940 original size:23 final size:23
Alignment explanation
Indices: 36485858--36485945 Score: 96
Period size: 21 Copynumber: 4.0 Consensus size: 23
36485848 ACCTGATCAG
*
36485858 TATACGACACA-TAAGTGCCTGA
1 TATACGACACACGAAGTGCCTGA
*
36485880 -A-ACGACACACGAGGTGCCTG-
1 TATACGACACACGAAGTGCCTGA
*
36485900 -ATACGACACACGAGGTGCCTGA
1 TATACGACACACGAAGTGCCTGA
**
36485922 TATACGACACATAAAGTGCCTGA
1 TATACGACACACGAAGTGCCTGA
36485945 T
1 T
36485946 CGGCAAAGCC
Statistics
Matches: 57, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
20 9 0.16
21 28 0.49
23 20 0.35
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (23 bp):
TATACGACACACGAAGTGCCTGA
Found at i:36485941 original size:44 final size:41
Alignment explanation
Indices: 36485859--36485945 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 41
36485849 CCTGATCAGT
* * *
36485859 ATACGACACATAAGTGCCTGAAACGACACACGAGGTGCCTG
1 ATACGACACAGAAGTGCCTGAAACGACACACAAAGTGCCTG
* *
36485900 ATACGACACACGAGGTGCCTGATATACGACACATAAAGTGCCTG
1 ATACGACACA-GAAGTGCCTGA-A-ACGACACACAAAGTGCCTG
36485944 AT
1 AT
36485946 CGGCAAAGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
41 10 0.26
42 9 0.24
43 1 0.03
44 18 0.47
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.17
Consensus pattern (41 bp):
ATACGACACAGAAGTGCCTGAAACGACACACAAAGTGCCTG
Found at i:36487116 original size:3 final size:3
Alignment explanation
Indices: 36487108--36487136 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
36487098 TATTCCTAGT
36487108 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
36487137 TATTTTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:36487284 original size:14 final size:14
Alignment explanation
Indices: 36487265--36487301 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
36487255 TATTTAAAAT
36487265 ATAATAATAATTTA
1 ATAATAATAATTTA
*
36487279 ATAATACTAATTTA
1 ATAATAATAATTTA
36487293 ATAATAATA
1 ATAATAATA
36487302 TAATAACAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAATAATAATTTA
Found at i:36487770 original size:89 final size:90
Alignment explanation
Indices: 36487612--36487861 Score: 317
Period size: 89 Copynumber: 2.8 Consensus size: 90
36487602 GGTCATTACA
* * * *
36487612 CCACTGCAACTTTAGGGAGATAAGACTTGCTTTCTTGAGTCTGCTCCACTACAACCTT-AGGGAG
1 CCACTGCAACTTTAGGGAGATAAAAATCGCTTTCTTGAGTCTGCTCCACTGCAA-CTTCAGGGAG
* *
36487676 ATAAGACTTGCTTTCTTA-GTCTGCT
65 ATAAGACTTGCTTTCTTAGGCCTACT
* * * * *
36487701 CTACTGTAACTTTAGGGAGATAAAAATCGCTTTTTTGGGTCTGCTCCACTGCAACTTCAGAGAGA
1 CCACTGCAACTTTAGGGAGATAAAAATCGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGA
36487766 TAAGACTTGCTTTCTTAGGCCTACT
66 TAAGACTTGCTTTCTTAGGCCTACT
* * * * *
36487791 CCATTGCAACCTCAGGGAGAT-AAGACCTGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAG
1 CCACTGCAACTTTAGGGAGATAAAAATC-GCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAG
36487855 ATAAGAC
65 ATAAGAC
36487862 CTGATGTGAT
Statistics
Matches: 137, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
88 3 0.02
89 73 0.53
90 61 0.45
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (90 bp):
CCACTGCAACTTTAGGGAGATAAAAATCGCTTTCTTGAGTCTGCTCCACTGCAACTTCAGGGAGA
TAAGACTTGCTTTCTTAGGCCTACT
Found at i:36487862 original size:45 final size:45
Alignment explanation
Indices: 36487612--36488041 Score: 341
Period size: 45 Copynumber: 9.7 Consensus size: 45
36487602 GGTCATTACA
*
36487612 CCACTGCAACTTTAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
*
36487657 CCACTACAACCTT-AGGGAGATAAGACTTGCTTTCTT-AGTCTGCT
1 CCACTGCAA-CTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
* * * * * * * *
36487701 CTACTGTAACTTTAGGGAGATAAAAATCGCTTTTTTGGGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
* * *
36487746 CCACTGCAACTTCAGAGAGATAAGACTTGCTTTCTT-AGGCCTACT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGA-GTCTGCT
* * *
36487791 CCATTGCAACCTCAGGGAGATAAGACCTGCTTTCTTGAGTCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
* * * *
36487836 CCACTGCAACTTCAGGGAGATAAGACCTG--AT-GTGA-TCTAC-
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
* ** * *
36487876 CCTACTGCAACTTCAGAGAGATAAGATCTAT-C-ACCTT-AATCCGCT
1 CC-ACTGCAACTTCAGGGAGATAAGA-CT-TGCTTTCTTGAGTCTGCT
* * * * * *
36487921 CCACTGTAACTTCAGGGAGATAGGA-TT-ATTGGCTTTAATCTGCT
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTT-TCTTGAGTCTGCT
* * ** *
36487965 CCACTACAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGC-
1 CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
* *
36488009 CTCACTACAACTTCA-GGAGGATTAGACTTGCTT
1 C-CACTGCAACTTCAGGGA-GATAAGACTTGCTT
36488042 ACTCCAATCC
Statistics
Matches: 309, Mismatches: 57, Indels: 38
0.76 0.14 0.09
Matches are distributed among these distances:
40 2 0.01
41 27 0.09
42 5 0.02
43 10 0.03
44 90 0.29
45 171 0.55
46 4 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (45 bp):
CCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTGCT
Found at i:36487941 original size:44 final size:44
Alignment explanation
Indices: 36487879--36487991 Score: 138
Period size: 44 Copynumber: 2.6 Consensus size: 44
36487869 GATCTACCCT
*
36487879 ACTGCAACTTCAGAGAGATAAGATCTA-TCACCTTAATCCGCTCC
1 ACTGCAACTTCAGGGAGATAAGAT-TATTCACCTTAATCCGCTCC
* * ** * *
36487923 ACTGTAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTATTCACCTTAATCCGCTCC
*
36487967 ACTACAACTTCAGGGAGATAAGATT
1 ACTGCAACTTCAGGGAGATAAGATT
36487992 TGCCATCTTC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
43 2 0.03
44 56 0.97
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.28
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTATTCACCTTAATCCGCTCC
Found at i:36500436 original size:15 final size:16
Alignment explanation
Indices: 36500391--36500439 Score: 57
Period size: 15 Copynumber: 3.1 Consensus size: 16
36500381 GAAAATAAAG
*
36500391 TAAAATATATAAATATA
1 TAAAA-ATATAAGTATA
*
36500408 TAAAAA-ATATGTAT-
1 TAAAAATATAAGTATA
36500422 TAAAAATATAAGTATA
1 TAAAAATATAAGTATA
36500438 TA
1 TA
36500440 TATGTACATA
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
14 6 0.22
15 13 0.48
16 3 0.11
17 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (16 bp):
TAAAAATATAAGTATA
Found at i:36500470 original size:20 final size:21
Alignment explanation
Indices: 36500447--36500487 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
36500437 ATATATGTAC
36500447 ATATATA-AGTTAT-AAAATAA
1 ATATATAGA-TTATGAAAATAA
36500467 ATATATAGATTATGAAAATAA
1 ATATATAGATTATGAAAATAA
36500488 TGATTATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (21 bp):
ATATATAGATTATGAAAATAA
Found at i:36506020 original size:21 final size:21
Alignment explanation
Indices: 36505995--36506038 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
36505985 TTTAAGTGTC
36505995 AAAA-TATATCTAAATTGATTA
1 AAAATTATATCTAAATT-ATTA
* *
36506016 AAAATTTTATTTAAATTATTA
1 AAAATTATATCTAAATTATTA
36506037 AA
1 AA
36506039 TTATTCGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (21 bp):
AAAATTATATCTAAATTATTA
Found at i:36506039 original size:30 final size:30
Alignment explanation
Indices: 36505996--36506056 Score: 72
Period size: 29 Copynumber: 2.0 Consensus size: 30
36505986 TTAAGTGTCA
36505996 AAATATATCTAAATTGATTAAAAATTTTATTT
1 AAATATATCTAAATT-ATTAAAAATTTT-TTT
**
36506028 AAAT-TAT-TAAATTATTCGAAATTTTTTT
1 AAATATATCTAAATTATTAAAAATTTTTTT
36506056 A
1 A
36506057 TTTAAGTGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 4 0.15
29 10 0.37
30 6 0.22
31 3 0.11
32 4 0.15
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.49
Consensus pattern (30 bp):
AAATATATCTAAATTATTAAAAATTTTTTT
Found at i:36506655 original size:17 final size:17
Alignment explanation
Indices: 36506633--36506678 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
36506623 CTCAAACTAA
36506633 ATTTTTAAAAAAATGTC
1 ATTTTTAAAAAAATGTC
***
36506650 ATTTTTTTTAAAATGTC
1 ATTTTTAAAAAAATGTC
36506667 ATTTTTTAAAAA
1 A-TTTTTAAAAA
36506679 TATTATAAAA
Statistics
Matches: 22, Mismatches: 6, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
17 15 0.68
18 7 0.32
ACGTcount: A:0.41, C:0.04, G:0.04, T:0.50
Consensus pattern (17 bp):
ATTTTTAAAAAAATGTC
Found at i:36506671 original size:16 final size:17
Alignment explanation
Indices: 36506641--36506679 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
36506631 AAATTTTTAA
36506641 AAAAATGTCATTTTTTT
1 AAAAATGTCATTTTTTT
*
36506658 TAAAATGTCA-TTTTTT
1 AAAAATGTCATTTTTTT
36506674 AAAAAT
1 AAAAAT
36506680 ATTATAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 11 0.55
17 9 0.45
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (17 bp):
AAAAATGTCATTTTTTT
Found at i:36508206 original size:18 final size:18
Alignment explanation
Indices: 36508154--36508213 Score: 52
Period size: 20 Copynumber: 3.3 Consensus size: 18
36508144 TTAAAAATGG
36508154 AAAA-TTAA-AAAATATAT
1 AAAATTTAATAAAA-ATAT
**
36508171 AAAATATTTTTAATAAATAT
1 AAAAT-TTAATAA-AAATAT
*
36508191 AAAATTTAATAAAAATTT
1 AAAATTTAATAAAAATAT
36508209 AAAAT
1 AAAAT
36508214 CAATTTAAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
17 4 0.12
18 10 0.29
19 7 0.21
20 11 0.32
21 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (18 bp):
AAAATTTAATAAAAATAT
Found at i:36508725 original size:14 final size:14
Alignment explanation
Indices: 36508706--36508735 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
36508696 GTTTAAATAA
36508706 TTATTTTTGAAATT
1 TTATTTTTGAAATT
36508720 TTATTTTTGAAATT
1 TTATTTTTGAAATT
36508734 TT
1 TT
36508736 GGAACAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (14 bp):
TTATTTTTGAAATT
Found at i:36521948 original size:574 final size:572
Alignment explanation
Indices: 36520855--36522004 Score: 2228
Period size: 574 Copynumber: 2.0 Consensus size: 572
36520845 ATGAACATCA
*
36520855 AATTCACTATCAAACCCTAAAATTTTGACATTTTCATGATTTAATACTAAAATCAAAATCTAACA
1 AATTCACTATCAAACCCTAAAATTTTGACATTTTCACGATTTAATACTAAAATCAAAATCTAACA
36520920 AAAATCACTTTACAAAATCATCAAACAACACAACTAAAGCTTCAAAGACATGGTTATCATAAAAA
66 AAAATCACTTTACAAAATCATCAAACAACACAACTAAAGCTTCAAAGACATGGTTATCATAAAAA
*
36520985 AAATTCAAGATTCATCAACGGCAACTTCTAAAATTTTTAACAGATTCAAAAACGAAGGTTCGGAC
131 AAATTCAAGATTCATCAACGGCAACTTCTAAAATTTTTAACAGATTCAAAAACGAAGGTACGGAC
*
36521050 TAGCTGGACGTAGTTGCAATGATCTCAAAAACATAAAAATTACAAGAAACATATATGAAATTCAT
196 TAGCTGGACGTAGTTGCAATGATCTCAAAAAAATAAAAATTACAAGAAACATATATGAAATTCAT
36521115 TTACATGCAAGGTATTAAGTCTAGCCGATTCTCCAAGCTATTCTTCCATGGATTTTAGGCAAAGA
261 TTACATGCAAGGTATTAAGTCTAGCCGATTCTCCAAGCTATTCTTCCATGGATTTTAGGCAAAGA
36521180 TGAAGTCAAATTATGAAGAATAAAAGCTTATTTCTTTCAATTTGTTTTATTTTACTTTAGATTTA
326 TGAAGTCAAATTATGAAGAATAAAAGCTTATTTCTTTCAATTTGTTTTATTTTACTTTAGATTTA
36521245 TTTACAATTTTGCCATTAAGCATATATTATTGTAACATTTTAATATCAATTGCCGTCCAACCTCA
391 TTTACAATTTTGCCATTAAGCATATATTATTGTAACATTTTAATATCAATTGCCGTCCAACCTCA
36521310 TTACATAAGGCCTAATTGTTACTTAAGTCCTTCCTCTTTTAGTAATTAAGCTATTTCATCTTTTA
456 TTACATAAGGCCTAATTGTTACTTAAGTCCTTCCTCTTTTAGTAATTAAGCTATTTCATCTTTTA
36521375 AATGTAATAATTACTAAGTTTTGCACCTTTTTCAATTTAGTACTTTTTCTTT
521 AATGTAATAATTACTAAGTTTTGCACCTTTTTCAATTTAGTACTTTTTCTTT
*
36521427 AATTCATTATCAAACCCTAAAATTTTGACATTTTCACGATTTAATACTAAAATCAAAATCTAACA
1 AATTCACTATCAAACCCTAAAATTTTGACATTTTCACGATTTAATACTAAAATCAAAATCTAACA
36521492 AAAATCACTTTACAAAATCATCAAACAACACAACTAAAGCTTCAAAGACATGGTTATCATAAAAA
66 AAAATCACTTTACAAAATCATCAAACAACACAACTAAAGCTTCAAAGACATGGTTATCAT--AAA
36521557 AAAAATTCAAGATTCATCAACGGCAACTTCTAAAATTTTTAACAGATTCAAAAACGAAGGTACGG
129 AAAAATTCAAGATTCATCAACGGCAACTTCTAAAATTTTTAACAGATTCAAAAACGAAGGTACGG
*
36521622 GCTAGCTGGACGTAGTTGCAATGATCTCAAAAAAATAAAAATTACAAGAAACATATATGAAATTC
194 ACTAGCTGGACGTAGTTGCAATGATCTCAAAAAAATAAAAATTACAAGAAACATATATGAAATTC
36521687 ATTTACATGCAAGGTATTAAGTCTAGCCGATTCTCCAAGCTATTCTTCCATGGATTTTAGGCAAA
259 ATTTACATGCAAGGTATTAAGTCTAGCCGATTCTCCAAGCTATTCTTCCATGGATTTTAGGCAAA
36521752 GATGAAGTCAAATTATGAAGAATAAAAGCTTATTTCTTTCAATTTGTTTTATTTTACTTTAGATT
324 GATGAAGTCAAATTATGAAGAATAAAAGCTTATTTCTTTCAATTTGTTTTATTTTACTTTAGATT
36521817 TATTTACAATTTTGCCATTAAGCATATATTATTGTAACATTTTAATATCAATTGCCGTCCAACCT
389 TATTTACAATTTTGCCATTAAGCATATATTATTGTAACATTTTAATATCAATTGCCGTCCAACCT
36521882 CATTACATAAGGCCTAATTGTTACTTAAGTCCTTCCTCTTTTAGTAATTAAGCTATTTCATCTTT
454 CATTACATAAGGCCTAATTGTTACTTAAGTCCTTCCTCTTTTAGTAATTAAGCTATTTCATCTTT
*
36521947 TAAATGTAATAATTACTAAGTTTTGCACCTTTTTCAATTTCGTACTTTTTCTTT
519 TAAATGTAATAATTACTAAGTTTTGCACCTTTTTCAATTTAGTACTTTTTCTTT
36522001 AATT
1 AATT
36522005 AAATATCTAA
Statistics
Matches: 570, Mismatches: 6, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
572 123 0.22
574 447 0.78
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.36
Consensus pattern (572 bp):
AATTCACTATCAAACCCTAAAATTTTGACATTTTCACGATTTAATACTAAAATCAAAATCTAACA
AAAATCACTTTACAAAATCATCAAACAACACAACTAAAGCTTCAAAGACATGGTTATCATAAAAA
AAATTCAAGATTCATCAACGGCAACTTCTAAAATTTTTAACAGATTCAAAAACGAAGGTACGGAC
TAGCTGGACGTAGTTGCAATGATCTCAAAAAAATAAAAATTACAAGAAACATATATGAAATTCAT
TTACATGCAAGGTATTAAGTCTAGCCGATTCTCCAAGCTATTCTTCCATGGATTTTAGGCAAAGA
TGAAGTCAAATTATGAAGAATAAAAGCTTATTTCTTTCAATTTGTTTTATTTTACTTTAGATTTA
TTTACAATTTTGCCATTAAGCATATATTATTGTAACATTTTAATATCAATTGCCGTCCAACCTCA
TTACATAAGGCCTAATTGTTACTTAAGTCCTTCCTCTTTTAGTAATTAAGCTATTTCATCTTTTA
AATGTAATAATTACTAAGTTTTGCACCTTTTTCAATTTAGTACTTTTTCTTT
Found at i:36530664 original size:17 final size:17
Alignment explanation
Indices: 36530644--36530677 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
36530634 GGCCAAACTC
*
36530644 AGGCAAGGTTCATGTAT
1 AGGCAAGGCTCATGTAT
36530661 AGGCAAGGCTCATGTAT
1 AGGCAAGGCTCATGTAT
36530678 GGTATCATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (17 bp):
AGGCAAGGCTCATGTAT
Found at i:36530810 original size:3 final size:3
Alignment explanation
Indices: 36530796--36530845 Score: 75
Period size: 3 Copynumber: 17.0 Consensus size: 3
36530786 GGATCGTCCA
* *
36530796 TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT TTT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
36530843 TAT
1 TAT
36530846 CTAACCATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
2 2 0.05
3 40 0.95
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (3 bp):
TAT
Found at i:36532476 original size:12 final size:12
Alignment explanation
Indices: 36532459--36532484 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
36532449 TGGTACATAT
36532459 TTTACTACTTAA
1 TTTACTACTTAA
36532471 TTTACTACTTAA
1 TTTACTACTTAA
36532483 TT
1 TT
36532485 AAAGCTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (12 bp):
TTTACTACTTAA
Found at i:36540243 original size:38 final size:37
Alignment explanation
Indices: 36540201--36540399 Score: 118
Period size: 38 Copynumber: 5.3 Consensus size: 37
36540191 TACCGCGAAT
*
36540201 GACCATTTGAATATCGTTGTCACGGTGTTTCCCTGAAG
1 GACCAGTTGAATA-CGTTGTCACGGTGTTTCCCTGAAG
* * **
36540239 GACCA-TTCAAATACCGTTATCATAGTGTTT-CCTCGAAG
1 GACCAGTT-GAATA-CGTTGTCACGGTGTTTCCCT-GAAG
* * * ** * *
36540277 GA-CAGTCGAATACTGTCGTCACAGTGTCACCTTGAAA
1 GACCAGTTGAATAC-GTTGTCACGGTGTTTCCCTGAAG
* *** *
36540314 GACTAGTTGAATACCACCGTCACGGTG-TTGCCTCGAAG
1 GACCAGTTGAATA-CGTTGTCACGGTGTTTCCCT-GAAG
* * *
36540352 GACCAGTTGAATACTGCTATCACGGTGTTGCCCTGAAG
1 GACCAGTTGAATAC-GTTGTCACGGTGTTTCCCTGAAG
36540390 GACCAGTTGA
1 GACCAGTTGA
36540400 TCCCTTTCAC
Statistics
Matches: 121, Mismatches: 30, Indels: 20
0.71 0.18 0.12
Matches are distributed among these distances:
36 1 0.01
37 29 0.24
38 86 0.71
39 5 0.04
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.28
Consensus pattern (37 bp):
GACCAGTTGAATACGTTGTCACGGTGTTTCCCTGAAG
Found at i:36543445 original size:35 final size:35
Alignment explanation
Indices: 36543371--36543481 Score: 89
Period size: 35 Copynumber: 3.2 Consensus size: 35
36543361 TTGAATAAAC
* * * * * *
36543371 GATCTACTTGATCTATAGAATGACATCG-TGGAAAC
1 GATCTACTGGCTCTATGGAGTGACAT-GATGAAAAT
36543406 GATCTACTGGCTCTATGGAGTGACATGATGAAAAT
1 GATCTACTGGCTCTATGGAGTGACATGATGAAAAT
* * ** **
36543441 GATCTATTGGCTTTGCGGAGTGACACCATGAAAAT
1 GATCTACTGGCTCTATGGAGTGACATGATGAAAAT
*
36543476 GGTCTA
1 GATCTA
36543482 ATTACTTATC
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
34 1 0.02
35 61 0.98
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.29
Consensus pattern (35 bp):
GATCTACTGGCTCTATGGAGTGACATGATGAAAAT
Found at i:36544103 original size:58 final size:58
Alignment explanation
Indices: 36543982--36544157 Score: 167
Period size: 58 Copynumber: 3.0 Consensus size: 58
36543972 AGTTTGCCAG
* * * * * ***
36543982 GGACTAACAAATGAAGAGGATGTCTAG-TAGGAATATTTAGTGTTGGGAAATACGCTAA
1 GGACTAAAAAATGAAGAGGATATC-CGTTAGGACTATCTAGTGTTGGGAAGCCCGCTAA
* *** *
36544040 AGACTATCGAAT-AAGAAGGATATCCGTTAGGACTATCTAGTGTTGGGAAGCCCGCCAA
1 GGACTAAAAAATGAAG-AGGATATCCGTTAGGACTATCTAGTGTTGGGAAGCCCGCTAA
* * * *
36544098 GGACTAAAAAATGAAGAGGATGTTCGTTAAGACTATCTAGTGTTGCGAAGCCCGCTAA
1 GGACTAAAAAATGAAGAGGATATCCGTTAGGACTATCTAGTGTTGGGAAGCCCGCTAA
36544156 GG
1 GG
36544158 TTTATCTTAC
Statistics
Matches: 95, Mismatches: 20, Indels: 6
0.79 0.17 0.05
Matches are distributed among these distances:
57 4 0.04
58 88 0.93
59 3 0.03
ACGTcount: A:0.35, C:0.14, G:0.27, T:0.24
Consensus pattern (58 bp):
GGACTAAAAAATGAAGAGGATATCCGTTAGGACTATCTAGTGTTGGGAAGCCCGCTAA
Found at i:36545530 original size:25 final size:26
Alignment explanation
Indices: 36545493--36545543 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
36545483 GTTGTAAATC
36545493 AAAAAAATATCTTTAGA-AATTTTCT
1 AAAAAAATATCTTTAGAGAATTTTCT
* *
36545518 AAAATAATCTCTTTAGAGAATTTTCT
1 AAAAAAATATCTTTAGAGAATTTTCT
36545544 CTCTACAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.65
26 8 0.35
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (26 bp):
AAAAAAATATCTTTAGAGAATTTTCT
Found at i:36546563 original size:15 final size:15
Alignment explanation
Indices: 36546543--36546571 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
36546533 TAGTAAAACC
36546543 TCGATAAATTAATAT
1 TCGATAAATTAATAT
36546558 TCGATAAATTAATA
1 TCGATAAATTAATA
36546572 ATCTTGGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.07, T:0.38
Consensus pattern (15 bp):
TCGATAAATTAATAT
Found at i:36547827 original size:26 final size:26
Alignment explanation
Indices: 36547791--36547854 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
36547781 AAATATTCTC
36547791 TAAATTAATAAAGATTAATTTATCGA
1 TAAATTAATAAAGATTAATTTATCGA
* *
36547817 TAAATTAATAAAATATTCATTTATCGA
1 TAAATTAAT-AAAGATTAATTTATCGA
* *
36547844 TACACTAATAA
1 TAAATTAATAA
36547855 CCTCGATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
26 11 0.33
27 22 0.67
ACGTcount: A:0.50, C:0.08, G:0.05, T:0.38
Consensus pattern (26 bp):
TAAATTAATAAAGATTAATTTATCGA
Found at i:36548138 original size:16 final size:15
Alignment explanation
Indices: 36548105--36548135 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36548095 TATAACGACT
36548105 ATAAAACATTCTAAA
1 ATAAAACATTCTAAA
*
36548120 ATAAAATATTCTAAA
1 ATAAAACATTCTAAA
36548135 A
1 A
36548136 ATATAATCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.61, C:0.10, G:0.00, T:0.29
Consensus pattern (15 bp):
ATAAAACATTCTAAA
Found at i:36551154 original size:6 final size:6
Alignment explanation
Indices: 36551143--36551213 Score: 50
Period size: 6 Copynumber: 13.2 Consensus size: 6
36551133 GGGATCACTA
*
36551143 ACTAAT ACTAAT -CTAAT -CTAAT -CT-A- ACTAAT ACTAAT AATAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* * *
36551186 A-GAAT A-GAAT AGTAAT -CTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT A
36551214 GAATAGAAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
4 3 0.05
5 26 0.46
6 27 0.48
ACGTcount: A:0.51, C:0.13, G:0.04, T:0.32
Consensus pattern (6 bp):
ACTAAT
Found at i:36551229 original size:14 final size:14
Alignment explanation
Indices: 36551210--36551237 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
36551200 ATCTAATACT
36551210 AATAGAATAGAAAA
1 AATAGAATAGAAAA
36551224 AATAGAATAGAAAA
1 AATAGAATAGAAAA
36551238 TACTAATATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (14 bp):
AATAGAATAGAAAA
Found at i:36551257 original size:27 final size:29
Alignment explanation
Indices: 36551170--36551263 Score: 84
Period size: 32 Copynumber: 3.0 Consensus size: 29
36551160 CTAATCTAAC
36551170 TAATACTAATAATAATAGAATAGAATAGTAA
1 TAATACTAAT-ATAATAGAATAGAATAG-AA
*
36551201 TCTAATACTAATAGAATAGAAAAAATAGAATAGAA
1 --TAATACTAATATAATAG----AATAGAATAGAA
*
36551236 -AATACTAATATAATAGAA-AGAAAAGAA
1 TAATACTAATATAATAGAATAGAATAGAA
36551263 T
1 T
36551264 TGTCATTTCG
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
27 8 0.15
28 2 0.04
32 21 0.40
33 10 0.19
35 2 0.04
36 10 0.19
ACGTcount: A:0.61, C:0.04, G:0.11, T:0.24
Consensus pattern (29 bp):
TAATACTAATATAATAGAATAGAATAGAA
Found at i:36551258 original size:36 final size:36
Alignment explanation
Indices: 36551188--36551259 Score: 103
Period size: 36 Copynumber: 2.0 Consensus size: 36
36551178 ATAATAATAG
*
36551188 AATAGAATAGTAATCTAATACTAATAGAATAGAAAA
1 AATAGAATAGAAATCTAATACTAATAGAATAGAAAA
36551224 AATAGAATAGAAAATACTAATA-TAATAGAA-AGAAAA
1 AATAGAATAG-AAAT-CTAATACTAATAGAATAGAAAA
36551260 GAATTGTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
36 16 0.48
37 11 0.33
38 6 0.18
ACGTcount: A:0.62, C:0.04, G:0.11, T:0.22
Consensus pattern (36 bp):
AATAGAATAGAAATCTAATACTAATAGAATAGAAAA
Found at i:36552455 original size:17 final size:17
Alignment explanation
Indices: 36552423--36552468 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 17
36552413 TATGAAAAAG
*
36552423 TATCAATACTCAAATAAA
1 TATCGATAC-CAAATAAA
36552441 TATCGATACCAAATAAA
1 TATCGATACCAAATAAA
36552458 TATCGATACCA
1 TATCGATACCA
36552469 TTTTGGCATT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 19 0.70
18 8 0.30
ACGTcount: A:0.50, C:0.20, G:0.04, T:0.26
Consensus pattern (17 bp):
TATCGATACCAAATAAA
Found at i:36553619 original size:20 final size:19
Alignment explanation
Indices: 36553594--36553637 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
36553584 ATAATCAATA
36553594 TTCATAGTTTAATCTACTAT
1 TTCATAGTTTAATCTAC-AT
* * *
36553614 TTCATATTTTATTTTACAT
1 TTCATAGTTTAATCTACAT
36553633 TTCAT
1 TTCAT
36553638 TCCATAACAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.27, C:0.14, G:0.02, T:0.57
Consensus pattern (19 bp):
TTCATAGTTTAATCTACAT
Found at i:36553668 original size:18 final size:18
Alignment explanation
Indices: 36553645--36553684 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
36553635 CATTCCATAA
* *
36553645 CATTTGCTATTTCAATAT
1 CATTTGCCATTTCAAAAT
36553663 CATTTGCCATTTCAAAAT
1 CATTTGCCATTTCAAAAT
36553681 CATT
1 CATT
36553685 ATCTTGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.45
Consensus pattern (18 bp):
CATTTGCCATTTCAAAAT
Found at i:36555823 original size:34 final size:34
Alignment explanation
Indices: 36555779--36555883 Score: 140
Period size: 34 Copynumber: 3.1 Consensus size: 34
36555769 GATTTATATA
*
36555779 TATTTCGTGTTTATTGTCCCAGCGGACTTATCTC
1 TATTTCGTGTTTACTGTCCCAGCGGACTTATCTC
* * ** *
36555813 TATTTTGTGTTTACTATCCC-GATAGAGTTATCTC
1 TATTTCGTGTTTACTGTCCCAG-CGGACTTATCTC
36555847 TATTTCGTGTTTACTGTCCCAGCGGACTTATCTC
1 TATTTCGTGTTTACTGTCCCAGCGGACTTATCTC
36555881 TAT
1 TAT
36555884 GAATGCCATG
Statistics
Matches: 58, Mismatches: 11, Indels: 4
0.79 0.15 0.05
Matches are distributed among these distances:
33 1 0.02
34 56 0.97
35 1 0.02
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.45
Consensus pattern (34 bp):
TATTTCGTGTTTACTGTCCCAGCGGACTTATCTC
Found at i:36564286 original size:13 final size:13
Alignment explanation
Indices: 36564255--36564294 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
36564245 TTCACCCTCG
* *
36564255 ATTTTACAAAAAA
1 ATTTTACTAAAAT
36564268 AGTTTTACTAAAAT
1 A-TTTTACTAAAAT
36564282 ATTTTACTAAAAT
1 ATTTTACTAAAAT
36564295 TACGATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.54
14 11 0.46
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (13 bp):
ATTTTACTAAAAT
Found at i:36566671 original size:45 final size:45
Alignment explanation
Indices: 36566571--36566676 Score: 126
Period size: 45 Copynumber: 2.4 Consensus size: 45
36566561 ATCTACATTA
36566571 TTTTGTTGTGT-TCCTATAGGCATAGGCAGATTCCATCTACGACGG
1 TTTTGTTGTGTATCC-ATAGGCATAGGCAGATTCCATCTACGACGG
** * * * *
36566616 TCCTGATGTGTATCCATA-GCTATAGGCAGATTCCATCTATGGCGT
1 TTTTGTTGTGTATCCATAGGC-ATAGGCAGATTCCATCTACGACGG
36566661 TTTTGTTGTGTATCCA
1 TTTTGTTGTGTATCCA
36566677 AGACCTAGTG
Statistics
Matches: 50, Mismatches: 9, Indels: 4
0.79 0.14 0.06
Matches are distributed among these distances:
44 2 0.04
45 45 0.90
46 3 0.06
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.38
Consensus pattern (45 bp):
TTTTGTTGTGTATCCATAGGCATAGGCAGATTCCATCTACGACGG
Found at i:36567012 original size:14 final size:14
Alignment explanation
Indices: 36566987--36567030 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
36566977 TGAAGAGTAT
*
36566987 TTTAAATTATTTTA
1 TTTATATTATTTTA
36567001 CTTTAT-TTATTTTA
1 -TTTATATTATTTTA
*
36567015 TTTTTATTATTTTA
1 TTTATATTATTTTA
36567029 TT
1 TT
36567031 ATTATTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
13 4 0.15
14 18 0.69
15 4 0.15
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTATATTATTTTA
Found at i:36567035 original size:14 final size:13
Alignment explanation
Indices: 36566992--36567037 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 13
36566982 AGTATTTTAA
*
36566992 ATTATTTTACTTT
1 ATTATTTTATTTT
36567005 ATTTATTTTATTTTT
1 A-TTATTTTA-TTTT
36567020 ATTATTTTATTATT
1 ATTATTTTATT-TT
36567034 ATTA
1 ATTA
36567038 AAATTTAAGT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 3 0.10
14 22 0.76
15 4 0.14
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTATTTTATTTT
Found at i:36568736 original size:22 final size:21
Alignment explanation
Indices: 36568704--36568747 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
36568694 TATTAATCTG
36568704 TGGGTTTTTTTTACTAAAAGA
1 TGGGTTTTTTTTACTAAAAGA
36568725 TGGGTTTTTTTTACTAAAAGA
1 TGGGTTTTTTTTACTAAAAGA
36568746 TG
1 TG
36568748 ACATTAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.27, C:0.05, G:0.20, T:0.48
Consensus pattern (21 bp):
TGGGTTTTTTTTACTAAAAGA
Found at i:36573901 original size:13 final size:13
Alignment explanation
Indices: 36573883--36573908 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36573873 AACCAATTGG
36573883 AAAAAAATTATAC
1 AAAAAAATTATAC
36573896 AAAAAAATTATAC
1 AAAAAAATTATAC
36573909 TAACTGTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.08, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAAAAATTATAC
Found at i:36575995 original size:37 final size:36
Alignment explanation
Indices: 36575950--36576111 Score: 106
Period size: 37 Copynumber: 4.6 Consensus size: 36
36575940 TAAAATATCA
36575950 ATGGCATGCTCATCATGCTTTCGATTTAACAATTTCG
1 ATGGCATGCTCATCATGCTTTCGATTTAACAATTT-G
* * * *
36575987 GTGGCATGCTTATCATGC-TTCAGGTTTGAA-AATCTTA
1 ATGGCATGCTCATCATGCTTTC-GATTT-AACAAT-TTG
* * * * *
36576024 ATGACATGTTTAATCATGCATTC-A-TTAAC-A-GT-
1 ATGGCATG-CTCATCATGCTTTCGATTTAACAATTTG
*
36576056 AT-GAATGCTCATCATGCTTTCGATTTAACAATTTCG
1 ATGGCATGCTCATCATGCTTTCGATTTAACAATTT-G
* *
36576092 GTGGCATGCTTATCATGCTT
1 ATGGCATGCTCATCATGCTT
36576112 CAGGTTTGAA
Statistics
Matches: 93, Mismatches: 19, Indels: 26
0.67 0.14 0.19
Matches are distributed among these distances:
30 11 0.12
31 4 0.04
32 7 0.08
33 2 0.02
34 1 0.01
35 3 0.03
36 6 0.06
37 44 0.47
38 12 0.13
39 3 0.03
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (36 bp):
ATGGCATGCTCATCATGCTTTCGATTTAACAATTTG
Found at i:36576142 original size:105 final size:105
Alignment explanation
Indices: 36575955--36576158 Score: 399
Period size: 105 Copynumber: 1.9 Consensus size: 105
36575945 TATCAATGGC
36575955 ATGCTCATCATGCTTTCGATTTAACAATTTCGGTGGCATGCTTATCATGCTTCAGGTTTGAAAAT
1 ATGCTCATCATGCTTTCGATTTAACAATTTCGGTGGCATGCTTATCATGCTTCAGGTTTGAAAAT
*
36576020 CTTAATGACATGTTTAATCATGCATTCATTAACAGTATGA
66 CTTAATGACATGCTTAATCATGCATTCATTAACAGTATGA
36576060 ATGCTCATCATGCTTTCGATTTAACAATTTCGGTGGCATGCTTATCATGCTTCAGGTTTGAAAAT
1 ATGCTCATCATGCTTTCGATTTAACAATTTCGGTGGCATGCTTATCATGCTTCAGGTTTGAAAAT
36576125 CTTAATGACATGCTTAATCATGCATTCATTAACA
66 CTTAATGACATGCTTAATCATGCATTCATTAACA
36576159 ATATCATGTC
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
105 98 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (105 bp):
ATGCTCATCATGCTTTCGATTTAACAATTTCGGTGGCATGCTTATCATGCTTCAGGTTTGAAAAT
CTTAATGACATGCTTAATCATGCATTCATTAACAGTATGA
Found at i:36576997 original size:12 final size:12
Alignment explanation
Indices: 36576980--36577012 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
36576970 AAAGGAAGGG
36576980 AAACAATGACAA
1 AAACAATGACAA
36576992 AAACAATGACAA
1 AAACAATGACAA
36577004 AAACAATGA
1 AAACAATGA
36577013 TGATCAAAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.67, C:0.15, G:0.09, T:0.09
Consensus pattern (12 bp):
AAACAATGACAA
Found at i:36577985 original size:18 final size:18
Alignment explanation
Indices: 36577962--36577996 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
36577952 TAGCTCTCCA
36577962 CAACAAGTTAGTATGCCC
1 CAACAAGTTAGTATGCCC
36577980 CAACAAGTTAGTATGCC
1 CAACAAGTTAGTATGCC
36577997 ATCTGCTGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.26, G:0.17, T:0.23
Consensus pattern (18 bp):
CAACAAGTTAGTATGCCC
Found at i:36582471 original size:60 final size:63
Alignment explanation
Indices: 36582403--36582521 Score: 172
Period size: 63 Copynumber: 1.9 Consensus size: 63
36582393 AAACTAATAC
* * *
36582403 AAATAGTATCTAAATATTAATT-TGT-AAAAA-TAAAGTTCAATAATTACAATATCTAAGTAT
1 AAATAGTATCTAAATATTAATTAGGTAAAAAAGTAAACTTAAATAATTACAATATCTAAGTAT
* *
36582463 AAATAGTATTTAAATATTAATTAGGTAAAAAAGTAAACTTAAATAATTATAATATCTAA
1 AAATAGTATCTAAATATTAATTAGGTAAAAAAGTAAACTTAAATAATTACAATATCTAA
36582522 TACAAATTGA
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
60 21 0.41
61 2 0.04
62 5 0.10
63 23 0.45
ACGTcount: A:0.52, C:0.05, G:0.07, T:0.36
Consensus pattern (63 bp):
AAATAGTATCTAAATATTAATTAGGTAAAAAAGTAAACTTAAATAATTACAATATCTAAGTAT
Found at i:36587345 original size:30 final size:30
Alignment explanation
Indices: 36587282--36587348 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
36587272 ACATTATATC
* * * **
36587282 TAATAGGGTTCTCTGTGTGTCCCAGGGTGA
1 TAATGGGGTTCTCTGTGTATCCCAAGGAAA
36587312 TAATGGGGTTCTCTGTGTATCCCAAGGAAA
1 TAATGGGGTTCTCTGTGTATCCCAAGGAAA
36587342 TAATGGG
1 TAATGGG
36587349 CAAACCTCAC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.31
Consensus pattern (30 bp):
TAATGGGGTTCTCTGTGTATCCCAAGGAAA
Found at i:36587491 original size:26 final size:27
Alignment explanation
Indices: 36587428--36587492 Score: 69
Period size: 26 Copynumber: 2.4 Consensus size: 27
36587418 GCATCCTGTC
* *
36587428 AGCCTTTGTGGCATCCTCTCTATATAT
1 AGCCTTTGTGGCATACTCTCTATAAAT
* * *
36587455 AGCGTTGGTGG-ATACTCTGTATAAAT
1 AGCCTTTGTGGCATACTCTCTATAAAT
*
36587481 GGCCTTTGTGGC
1 AGCCTTTGTGGC
36587493 GTACGTTGTA
Statistics
Matches: 29, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
26 20 0.69
27 9 0.31
ACGTcount: A:0.18, C:0.20, G:0.25, T:0.37
Consensus pattern (27 bp):
AGCCTTTGTGGCATACTCTCTATAAAT
Found at i:36588859 original size:17 final size:17
Alignment explanation
Indices: 36588839--36588874 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
36588829 TTCAAAATGT
* *
36588839 TTATTTGCGTGAAATCA
1 TTATTTCCGTAAAATCA
36588856 TTATTTCCGTAAAATCA
1 TTATTTCCGTAAAATCA
36588873 TT
1 TT
36588875 TGTTGTGCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.44
Consensus pattern (17 bp):
TTATTTCCGTAAAATCA
Found at i:36596434 original size:18 final size:18
Alignment explanation
Indices: 36596413--36596447 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36596403 GTTCCACGAG
*
36596413 CTTAATCTTTTCCACTAC
1 CTTAATCTTCTCCACTAC
*
36596431 CTTAGTCTTCTCCACTA
1 CTTAATCTTCTCCACTA
36596448 AAGTTTCGAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.34, G:0.03, T:0.43
Consensus pattern (18 bp):
CTTAATCTTCTCCACTAC
Found at i:36601537 original size:27 final size:27
Alignment explanation
Indices: 36601507--36601636 Score: 145
Period size: 27 Copynumber: 4.8 Consensus size: 27
36601497 TCATCTCCTA
**
36601507 GGGGTATAACAGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
36601534 GGGGTATTTC-GATCATTTTACCTTATG
1 GGGGTATTTCAG-TCATTTTACCCTATG
* *
36601561 GGGGCATTTCAGTCATTTTATCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
** *
36601588 GGGGTATTTTGGTCATTTTATCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
36601615 AGGGTATTTTAGTTATTTTACC
1 GGGGTATTTCAGTCATTTTACC
36601637 TATTTTGGGG
Statistics
Matches: 88, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
26 1 0.01
27 86 0.98
28 1 0.01
ACGTcount: A:0.20, C:0.15, G:0.22, T:0.43
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATG
Found at i:36601574 original size:54 final size:54
Alignment explanation
Indices: 36601516--36601636 Score: 163
Period size: 54 Copynumber: 2.2 Consensus size: 54
36601506 AGGGGTATAA
*
36601516 CAGTCATTTTACCCTATGGGGGTATTTCGATCATTTTA-CCTTATGGGGGCATTT
1 CAGTCATTTTACCCTATGGGGGTATTTCGATCATTTTATCC-TATGAGGGCATTT
* * * *
36601570 CAGTCATTTTATCCTATGGGGGTATTTTGGTCATTTTATCCTATGAGGGTATTT
1 CAGTCATTTTACCCTATGGGGGTATTTCGATCATTTTATCCTATGAGGGCATTT
* *
36601624 TAGTTATTTTACC
1 CAGTCATTTTACC
36601637 TATTTTGGGG
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 56 0.97
55 2 0.03
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.45
Consensus pattern (54 bp):
CAGTCATTTTACCCTATGGGGGTATTTCGATCATTTTATCCTATGAGGGCATTT
Found at i:36608643 original size:31 final size:31
Alignment explanation
Indices: 36608608--36608676 Score: 104
Period size: 31 Copynumber: 2.2 Consensus size: 31
36608598 CTTAAAACCC
*
36608608 TAGTGACTTAAAT-AATAACTTTTGAATAGTT
1 TAGTGACTTAAATGAA-AACTTTTCAATAGTT
*
36608639 TAGTGACTTGAATGAAAACTTTTCAATAGTT
1 TAGTGACTTAAATGAAAACTTTTCAATAGTT
36608670 TAGTGAC
1 TAGTGAC
36608677 CATTTTGTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
31 33 0.94
32 2 0.06
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (31 bp):
TAGTGACTTAAATGAAAACTTTTCAATAGTT
Found at i:36608762 original size:21 final size:20
Alignment explanation
Indices: 36608724--36608762 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
36608714 AACTTACTAA
*
36608724 TAGTTTAATGACATTAAATG
1 TAGTTTAATGACAATAAATG
*
36608744 TAGTTTACCTGACAATAAA
1 TAGTTTA-ATGACAATAAA
36608763 AGGGGACTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.41, C:0.10, G:0.13, T:0.36
Consensus pattern (20 bp):
TAGTTTAATGACAATAAATG
Found at i:36610232 original size:27 final size:28
Alignment explanation
Indices: 36610201--36610257 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
36610191 AAATCATTAC
* *
36610201 AAATCCCAAATAATCA-TAAAAATAAAA
1 AAATCCAAAAAAATCATTAAAAATAAAA
* *
36610228 AAATCCAAAAAAATTATTAAAAATATAA
1 AAATCCAAAAAAATCATTAAAAATAAAA
36610256 AA
1 AA
36610258 TTATAAAAAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.68, C:0.11, G:0.00, T:0.21
Consensus pattern (28 bp):
AAATCCAAAAAAATCATTAAAAATAAAA
Found at i:36616370 original size:16 final size:16
Alignment explanation
Indices: 36616351--36616382 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36616341 TTCGCATGCC
*
36616351 TTTTACATCACTTCAA
1 TTTTAAATCACTTCAA
36616367 TTTTAAATCACTTCAA
1 TTTTAAATCACTTCAA
36616383 ATTGATTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.22, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTTAAATCACTTCAA
Found at i:36624932 original size:16 final size:16
Alignment explanation
Indices: 36624913--36624944 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
36624903 TTCGCATGCC
*
36624913 TTTTACATCACTTCAA
1 TTTTAAATCACTTCAA
36624929 TTTTAAATCACTTCAA
1 TTTTAAATCACTTCAA
36624945 ATAGATTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.22, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTTAAATCACTTCAA
Found at i:36636223 original size:26 final size:26
Alignment explanation
Indices: 36636183--36636236 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
36636173 CCTGTAAGTG
* *
36636183 TTCTAAAACTGATATATGCTATGATA
1 TTCTAAAAATAATATATGCTATGATA
* *
36636209 TTCTAAAAATAATATCTGTTATGATA
1 TTCTAAAAATAATATATGCTATGATA
36636235 TT
1 TT
36636237 TTGAAACTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (26 bp):
TTCTAAAAATAATATATGCTATGATA
Found at i:36651010 original size:31 final size:29
Alignment explanation
Indices: 36650962--36651026 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
36650952 GTATGACACC
*
36650962 AAAGCCCATGCACATATATATTATATATAAT
1 AAAGCCCATG--CATATATATTATATAAAAT
*
36650993 AAAGTCCATGCATATATATTATATAAAAT
1 AAAGCCCATGCATATATATTATATAAAAT
36651022 AAAGC
1 AAAGC
36651027 TTACGCATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
29 22 0.71
31 9 0.29
ACGTcount: A:0.48, C:0.14, G:0.08, T:0.31
Consensus pattern (29 bp):
AAAGCCCATGCATATATATTATATAAAAT
Found at i:36655030 original size:15 final size:16
Alignment explanation
Indices: 36654997--36655027 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36654987 TAATAATTTG
36654997 AAAATTAAATTTTTTT
1 AAAATTAAATTTTTTT
36655013 AAAATTAAATTTTTT
1 AAAATTAAATTTTTT
36655028 AAAGCTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
AAAATTAAATTTTTTT
Found at i:36655307 original size:23 final size:23
Alignment explanation
Indices: 36655281--36655413 Score: 117
Period size: 23 Copynumber: 5.8 Consensus size: 23
36655271 TTTTTTTCAA
*
36655281 AGAAACTTCACTATTCATCGTAG
1 AGAATCTTCACTATTCATCGTAG
* * * * *
36655304 AGAATCTTCATTGTTTATTGCAG
1 AGAATCTTCACTATTCATCGTAG
* * *
36655327 AGAATCTTCACTGTTCATCGCAA
1 AGAATCTTCACTATTCATCGTAG
*
36655350 AGAATCTTCACTGTTCAT-GTCAG
1 AGAATCTTCACTATTCATCGT-AG
* * *
36655373 AGAATTTTTACTATTCATTGTAG
1 AGAATCTTCACTATTCATCGTAG
36655396 CA-AATCTTCACTATTCAT
1 -AGAATCTTCACTATTCAT
36655414 GCCAAATATT
Statistics
Matches: 90, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
22 1 0.01
23 86 0.96
24 3 0.03
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.38
Consensus pattern (23 bp):
AGAATCTTCACTATTCATCGTAG
Found at i:36655354 original size:46 final size:46
Alignment explanation
Indices: 36655281--36655390 Score: 132
Period size: 46 Copynumber: 2.4 Consensus size: 46
36655271 TTTTTTTCAA
* * * * *
36655281 AGAAACTTCACTATTCATCGTAGAGAATCTTCATTGTTTAT-TGCAG
1 AGAATCTTCACTATTCATCGCAAAGAATCTTCACTGTTCATGT-CAG
*
36655327 AGAATCTTCACTGTTCATCGCAAAGAATCTTCACTGTTCATGTCAG
1 AGAATCTTCACTATTCATCGCAAAGAATCTTCACTGTTCATGTCAG
* *
36655373 AGAATTTTTACTATTCAT
1 AGAATCTTCACTATTCAT
36655391 TGTAGCAAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
46 53 0.98
47 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (46 bp):
AGAATCTTCACTATTCATCGCAAAGAATCTTCACTGTTCATGTCAG
Found at i:36657316 original size:30 final size:31
Alignment explanation
Indices: 36657282--36657343 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
36657272 TAAAGGAAAG
*
36657282 TTTAA-AATTTTAAAACAAAGTTTTGATTTT
1 TTTAACAATTTCAAAACAAAGTTTTGATTTT
* * * *
36657312 TTTAACTATTTCGAAATAATGTTTTGATTTT
1 TTTAACAATTTCAAAACAAAGTTTTGATTTT
36657343 T
1 T
36657344 AAGAAAAGCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.53
Consensus pattern (31 bp):
TTTAACAATTTCAAAACAAAGTTTTGATTTT
Found at i:36657329 original size:150 final size:148
Alignment explanation
Indices: 36656894--36657330 Score: 639
Period size: 149 Copynumber: 2.9 Consensus size: 148
36656884 TTGATTTTGG
*
36656894 GAAAAATAGTGGTTTTTTTTTAAAAAAAGTAGAAAGTTTAGATTTTGAAAAA-AATAAATATATG
1 GAAAAATAGT-G-TTTTTTTT-AAAAAAGGAGAAAGTTTAGATTTTGAAAAATAA-AAATATAT-
36656958 GTTTTTTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTTCAACTA
61 -TTTTTTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAGTTTTGA-TTTTTTT-AACTA
36657023 TTTCAAAGTAAAAGCTTTAATCTTTAA
123 TTTCAAA-TAAAAGCTTTAATCTTTAA
* *
36657050 GAAAAATAGTG--TTTTTTAAGAAAAAGAGAAAGTTTAGATTTTAAAAAATAAAAAT-TATTTTT
1 GAAAAATAGTGTTTTTTTTAA-AAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATATATTTTT
* * * * *
36657112 TTAGTTATTTTAAAGGAAAATTTAAATTTTTGAAATAAAGTTTTGATTTTTTTAAGTACTTCAAA
65 TTAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTAACTATTTC-AA
36657177 ATAAAAGCTTTAATCTTTAA
129 ATAAAAGCTTTAATCTTTAA
36657197 GAAAAATAGTGTTTTTTTTAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATATATTTTTT
1 GAAAAATAGTGTTTTTTTTAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATATATTTTTT
* *
36657262 TAAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTTAACTATTTCGAA
66 T-AGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTAACTATTTC-AA
36657327 ATAA
129 ATAA
36657331 TGTTTTGATT
Statistics
Matches: 256, Mismatches: 18, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
147 37 0.14
148 43 0.17
149 64 0.25
150 59 0.23
151 5 0.02
152 35 0.14
153 2 0.01
155 1 0.00
156 10 0.04
ACGTcount: A:0.43, C:0.03, G:0.12, T:0.42
Consensus pattern (148 bp):
GAAAAATAGTGTTTTTTTTAAAAAAGGAGAAAGTTTAGATTTTGAAAAATAAAAATATATTTTTT
TAGTTATTTTAAAGGAAAGTTTAAATTTTTAAAACAAAGTTTTGATTTTTTTAACTATTTCAAAT
AAAAGCTTTAATCTTTAA
Found at i:36657395 original size:150 final size:146
Alignment explanation
Indices: 36656919--36657330 Score: 546
Period size: 150 Copynumber: 2.8 Consensus size: 146
36656909 TTTTTTAAAA
* * **
36656919 AAAGTAGAAAGTTTAGATTTTGAAAAAAATAAATATATGGTTTTTTAGTTATTTTAAAGGAAAGT
1 AAAG-AGAAAGTTTAGATTTTGTAAAAAATAAAAATATATTTTTTTAGTTATTTTAAAGGAAAGT
36656984 TTAAATTTTTAAAACAAAGTTTTGATTTTTTTTCAACTATTTCAAAGTAAAAGCTTTAATCTTTA
65 TTAAATTTTTAAAACAAAGTTTTGA-TTTTTTT-AACTATTTCAAA-TAAAAGCTTTAATCTTTA
*
36657049 AGAAAAATAGTGTTTTTTAAGAA
127 AGAAAAATAGTGTTTTTT---AT
*
36657072 AAAGAGAAAGTTTAGA-TTT-TAAAAAATAAAAAT-TATTTTTTTAGTTATTTTAAAGGAAAATT
1 AAAGAGAAAGTTTAGATTTTGTAAAAAATAAAAATATATTTTTTTAGTTATTTTAAAGGAAAGTT
* * * *
36657134 TAAATTTTTGAAATAAAGTTTTGATTTTTTTAAGTACTTCAAAATAAAAGCTTTAATCTTTAAGA
66 TAAATTTTTAAAACAAAGTTTTGATTTTTTTAACTATTTC-AAATAAAAGCTTTAATCTTTAAGA
*
36657199 AAAATAGTGTTTTTTTTAAA
130 AAAATAGTG--TTTTTT-AT
*
36657219 AAAGGAGAAAGTTTAGATTTTG--AAAAATAAAAATATATTTTTTTAAGTCATTTTAAAGGAAAG
1 AAA-GAGAAAGTTTAGATTTTGTAAAAAATAAAAATATATTTTTTT-AGTTATTTTAAAGGAAAG
*
36657282 TTTAAAATTTTAAAACAAAGTTTTGATTTTTTTAACTATTTCGAAATAA
64 TTTAAATTTTTAAAACAAAGTTTTGATTTTTTTAACTATTTC-AAATAA
36657331 TGTTTTGATT
Statistics
Matches: 233, Mismatches: 18, Indels: 19
0.86 0.07 0.07
Matches are distributed among these distances:
147 42 0.18
148 35 0.15
149 66 0.28
150 71 0.30
151 3 0.01
152 12 0.05
153 4 0.02
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.42
Consensus pattern (146 bp):
AAAGAGAAAGTTTAGATTTTGTAAAAAATAAAAATATATTTTTTTAGTTATTTTAAAGGAAAGTT
TAAATTTTTAAAACAAAGTTTTGATTTTTTTAACTATTTCAAATAAAAGCTTTAATCTTTAAGAA
AAATAGTGTTTTTTAT
Found at i:36657542 original size:22 final size:21
Alignment explanation
Indices: 36657507--36657551 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
36657497 AATGTTTTGA
*
36657507 TTTTTAAGAAAAATAATGATT
1 TTTTTAAAAAAAATAATGATT
**
36657528 TTTTTAAAAGAAAATTTTGATT
1 TTTTTAAAA-AAAATAATGATT
36657550 TT
1 TT
36657552 GCAAATAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (21 bp):
TTTTTAAAAAAAATAATGATT
Found at i:36659547 original size:20 final size:22
Alignment explanation
Indices: 36659506--36659555 Score: 68
Period size: 20 Copynumber: 2.3 Consensus size: 22
36659496 TGTTTTTTAG
36659506 TATTTGTGCATATTAGATTTATT
1 TATTTGTGCA-ATTAGATTTATT
36659529 TATTTGTGC-ATTA-ATTTATT
1 TATTTGTGCAATTAGATTTATT
*
36659549 TAATTGT
1 TATTTGT
36659556 CTAATGTCAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 13 0.50
21 4 0.15
23 9 0.35
ACGTcount: A:0.26, C:0.04, G:0.12, T:0.58
Consensus pattern (22 bp):
TATTTGTGCAATTAGATTTATT
Found at i:36674490 original size:56 final size:56
Alignment explanation
Indices: 36674423--36674654 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
36674413 TATTAGTTTA
* *
36674423 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
36674479 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
36674535 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
36674591 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
36674647 TTGCCCAT
1 TTGCCCAT
36674655 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:36678771 original size:61 final size:61
Alignment explanation
Indices: 36678676--36678797 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
36678666 ACATGGGAGA
36678676 CTTTTACTAATAAACTGTACTAATTGGCCTAACCAAAAATTCTAAAAAAAATATGTAGATG
1 CTTTTACTAATAAACTGTACTAATTGGCCTAACCAAAAATTCTAAAAAAAATATGTAGATG
36678737 CTTTTACTAATAAACTGTACTAATTGGCCTAACCAAAAATTCTAAAAAAAATATGTAGATG
1 CTTTTACTAATAAACTGTACTAATTGGCCTAACCAAAAATTCTAAAAAAAATATGTAGATG
36678798 GACATATGAG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (61 bp):
CTTTTACTAATAAACTGTACTAATTGGCCTAACCAAAAATTCTAAAAAAAATATGTAGATG
Found at i:36696083 original size:23 final size:23
Alignment explanation
Indices: 36696034--36696098 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 23
36696024 ATTTTTTTCG
* *
36696034 GAGAATCTTCATTCTTCATCGCA
1 GAGAATCTTCACTATTCATCGCA
* *
36696057 GAGAATCTTCACTGTTCAT-GCCT
1 GAGAATCTTCACTATTCATCG-CA
* *
36696080 GAGATTTTTCACTATTCAT
1 GAGAATCTTCACTATTCAT
36696099 TTGTCTTTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
22 1 0.03
23 34 0.97
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.38
Consensus pattern (23 bp):
GAGAATCTTCACTATTCATCGCA
Found at i:36699014 original size:27 final size:27
Alignment explanation
Indices: 36698984--36699161 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36698974 ATATTGAGTC
* * * *
36698984 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36699011 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36699038 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36699066 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36699093 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36699120 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36699147 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36699162 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36699123 original size:82 final size:81
Alignment explanation
Indices: 36699005--36699160 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36698995 TGCTATATAA
* *
36699005 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36699070 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36699087 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36699151 CACTTAGTGC
65 CACTTAGTGC
36699161 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36707076 original size:27 final size:27
Alignment explanation
Indices: 36707046--36707223 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
36707036 ATATTGAGCC
* *
36707046 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
36707073 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
36707100 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
36707128 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
36707155 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
36707182 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
36707209 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36707224 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:36707158 original size:55 final size:54
Alignment explanation
Indices: 36707046--36707223 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
36707036 ATATTGAGCC
* * * * *
36707046 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
36707100 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
36707155 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
36707209 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36707224 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:36722841 original size:45 final size:45
Alignment explanation
Indices: 36722776--36722871 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 45
36722766 AAAATAATCT
* * *
36722776 TATT-TATATTCATTATTTAAAATGGATATAAAAATTTAGATGAA
1 TATTATATATTAAATATTTAAAATAGATATAAAAATTTAGATGAA
* * * *
36722820 TATTATATATTAAATATTTAAAATATATTTAAAATTTTAGATTAA
1 TATTATATATTAAATATTTAAAATAGATATAAAAATTTAGATGAA
36722865 T-TTATAT
1 TATTATAT
36722872 TTTATCTATC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 10 0.23
45 34 0.77
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.48
Consensus pattern (45 bp):
TATTATATATTAAATATTTAAAATAGATATAAAAATTTAGATGAA
Found at i:36725287 original size:24 final size:23
Alignment explanation
Indices: 36725255--36725299 Score: 81
Period size: 24 Copynumber: 1.9 Consensus size: 23
36725245 TTCTTTTTAT
36725255 TTCTTTATTTTTCTCTTCTTCTTC
1 TTCTTTATTTTTCTC-TCTTCTTC
36725279 TTCTTTATTTTTCTCTCTTCT
1 TTCTTTATTTTTCTCTCTTCT
36725300 CATATTCTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.04, C:0.24, G:0.00, T:0.71
Consensus pattern (23 bp):
TTCTTTATTTTTCTCTCTTCTTC
Found at i:36729478 original size:44 final size:45
Alignment explanation
Indices: 36729405--36729503 Score: 119
Period size: 44 Copynumber: 2.2 Consensus size: 45
36729395 AATTGTAAAT
* * * ** *
36729405 TACACAACAATTAACCTGCAGATGGAATCTGCCTCTGGTTGTGGA
1 TACACAACAAGTAACCCGCAGATGAAATCTAACTCTGGCTGTGGA
*
36729450 TACACAACAAGT-ACCCGCAGATGAAATCTAACTCTGGCTGTGGG
1 TACACAACAAGTAACCCGCAGATGAAATCTAACTCTGGCTGTGGA
*
36729494 TGCACAACAA
1 TACACAACAA
36729504 AAGTTTTACA
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
44 35 0.76
45 11 0.24
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.22
Consensus pattern (45 bp):
TACACAACAAGTAACCCGCAGATGAAATCTAACTCTGGCTGTGGA
Found at i:36742718 original size:717 final size:715
Alignment explanation
Indices: 36741330--36742758 Score: 2371
Period size: 717 Copynumber: 2.0 Consensus size: 715
36741320 GGAAGGATTA
*
36741330 GCACCGAATTGATTAATTAACATCATAGAGTCGAATATCAAAAATACGAAAAGATTAAAAATAAT
1 GCACCAAATTGATTAATTAACATCATAGAGTCGAATATCAAAAATACGAAAAGATTAAAAATAAT
36741395 TATCCTTTTATTAATACCGCATTTCAAAACAAAACTTGGATAAATCTGAACGAGTGTGAAAGGCT
66 TATCCTTTTATTAATACCGCATTTCAAAACAAAACTTGGATAAATCTGAACGAGTGTGAAAGGCT
* ** * *
36741460 TTCTTGTCTCGAGACAATAGAATGTTGTATCCCGTAAGTTAGAATGTGACGTTTGAATTCTCAAG
131 TTCTCGTCTCGAGACAATAGAACATCGTATCCCGTAAGTTAGAATGTGACGTTTGAATTCTAAAG
*
36741525 AATAAGCTAACCTTCCAAAACTTTATTGAAATTTGGCAATTTTGCAAACGAGAGAGGTTTTAGCC
196 AATAAGCTAACCTTCCAAAACTTTATTGAAATTTAGCAATTTTGCAAACGAGAGAGGTTTTAGCC
36741590 ATTTTAGATCGACGAGAAAATCGAAACCCTGTAAGTTAGGGTACGATCTCTCGAAGTTCCAAAGA
261 ATTTTAGATCGACGAGAAAATCGAAACCCTGTAAGTTAGGGTACGATCTCTCGAAGTTCCAAAGA
*
36741655 CTGCTTGTAACCTGCTTTTAAATTTTTAAAGAAACATATGTGTTTTGAAAATAAAAGGTCATTCA
326 CTGCTTGTAACCTGCTTTTAAATTTTTAAAGAAACATATGTCTTTTGAAAATAAAAGGTCATTCA
* *
36741720 AATTAAGAAGAAAATCGAGACCCCGTAAGGTAGGGTACGATTTATCGACACTTCGAAACTTATTT
391 AATTAAGAAGAAAATCGAGACCCCGTAAGGTAAGGTACGATTTATCGACACTTCGAAACATATTT
* * * *
36741785 TAAAGAACAAAACTACTCAAAAAGTATTTAGTCGATTGACTTGACATAAAAAACAACTAATATCA
456 TAAAAAACAAAACGACTCAAAAAGTATTTAGTCAATTGAATTGACATAAAAAACAACTAATATCA
* *
36741850 TTCACATGTATTGGGATTTGGTTTACGATGCAAATCAAGAAGTACGAGCATAATCGCATGCATGG
521 TTCACATGCATTGGGATTTGGTTTACGATGCAAATCAAGAAGTAAGAGCATAATCGCATGCATGG
* *
36741915 CGTAGGGATATTTAACAAGAATATGAACAACATTTCAACACAGCAAGGCAAATTAAGGCATACAT
586 CGTAGGGATATATAACAAGAATATGAACAACATGTCAACACAGCAAGGCAAATTAAGGCATACAT
* *
36741980 TTGTATAGACATAGAAATTACCTCACATTATATTATGTTAAAGCTAAAGCTAAAACCCAAAATTG
651 TTGTATACACATAGAAATTACCTCACATTATATTATGTTAAAACTAAAGCTAAAACCCAAAATTG
** * *
36742045 GCACCAAATTGATTAATTAATGTCTTAGAGTCGAATATCGAAAATACGAAAAGATTAAAAATAAT
1 GCACCAAATTGATTAATTAACATCATAGAGTCGAATATCAAAAATACGAAAAGATTAAAAATAAT
* * *
36742110 TCT-CTTCTTATTAATACCGCATTTCAAAACAAAACTTGGATAAATCTGAACTAGTGTGGAAGGC
66 TATCCTT-TTATTAATACCGCATTTCAAAACAAAACTTGGATAAATCTGAACGAGTGTGAAAGGC
36742174 TTTCTCGTCTCGAGACAATAGAACATCGTATCCCGTAAGTTAGAATGTGACGTTTGAATTCTAAA
130 TTTCTCGTCTCGAGACAATAGAACATCGTATCCCGTAAGTTAGAATGTGACGTTTGAATTCTAAA
* *
36742239 GAATAAGCTAACCTTCTC-AAACTTTATTGAAATTTAGTAATTTTGCAAAACGAGATAGGTTTTA
195 GAATAAGCTAACCTTC-CAAAACTTTATTGAAATTTAGCAATTTTGC-AAACGAGAGAGGTTTTA
** * *
36742303 GCTGTTTTAGATCGACGAGAAAATTGAAATCCC-GTAAGTTAGGGTATGATCTCTCGAAGTTCCA
258 GCCATTTTAGATCGACGAGAAAATCGAAA-CCCTGTAAGTTAGGGTACGATCTCTCGAAGTTCCA
* *
36742367 AAGACTGCTTGTAACCTGCTTTTAAATTTTTAAAGTAACATATGTCTTTTGAAAATAAAGGGTCA
322 AAGACTGCTTGTAACCTGCTTTTAAATTTTTAAAGAAACATATGTCTTTTGAAAATAAAAGGTCA
* * * * *
36742432 TTTCGAATTAATAAGAAAATCGAGACTCTGTAAGTTAAGGTACGA-TTACTCGACACTTCGAAAC
387 -TTCAAATTAAGAAGAAAATCGAGACCCCGTAAGGTAAGGTACGATTTA-TCGACACTTCGAAAC
*
36742496 ATATTTTAAAAAACAAAACGACTCAAAAAGTATTTAGTCAATTGAATTGACATAAAAAACAATTA
450 ATATTTTAAAAAACAAAACGACTCAAAAAGTATTTAGTCAATTGAATTGACATAAAAAACAACTA
*
36742561 ATATCGTTCACATGCATTGGGATTTGGTTTACGATGCAAATCAAGAAGTAAGAGCATAATCGCAT
515 ATATCATTCACATGCATTGGGATTTGGTTTACGATGCAAATCAAGAAGTAAGAGCATAATCGCAT
*
36742626 GCATGGCGTAGGGATATATAACAAGAATATGAACAACATGTGAACACAGCAAGGCAAATTAAGGC
580 GCATGGCGTAGGGATATATAACAAGAATATGAACAACATGTCAACACAGCAAGGCAAATTAAGGC
* *
36742691 ATACATTTGTATACACATGGCAATTACCTCACATTATATTATGTTAAAACTAAAGCTAAAACCCA
645 ATACATTTGTATACACATAGAAATTACCTCACATTATATTATGTTAAAACTAAAGCTAAAACCCA
36742756 AAA
710 AAA
36742759 GCTAATGAAT
Statistics
Matches: 663, Mismatches: 45, Indels: 10
0.92 0.06 0.01
Matches are distributed among these distances:
714 3 0.00
715 219 0.33
716 138 0.21
717 303 0.46
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.29
Consensus pattern (715 bp):
GCACCAAATTGATTAATTAACATCATAGAGTCGAATATCAAAAATACGAAAAGATTAAAAATAAT
TATCCTTTTATTAATACCGCATTTCAAAACAAAACTTGGATAAATCTGAACGAGTGTGAAAGGCT
TTCTCGTCTCGAGACAATAGAACATCGTATCCCGTAAGTTAGAATGTGACGTTTGAATTCTAAAG
AATAAGCTAACCTTCCAAAACTTTATTGAAATTTAGCAATTTTGCAAACGAGAGAGGTTTTAGCC
ATTTTAGATCGACGAGAAAATCGAAACCCTGTAAGTTAGGGTACGATCTCTCGAAGTTCCAAAGA
CTGCTTGTAACCTGCTTTTAAATTTTTAAAGAAACATATGTCTTTTGAAAATAAAAGGTCATTCA
AATTAAGAAGAAAATCGAGACCCCGTAAGGTAAGGTACGATTTATCGACACTTCGAAACATATTT
TAAAAAACAAAACGACTCAAAAAGTATTTAGTCAATTGAATTGACATAAAAAACAACTAATATCA
TTCACATGCATTGGGATTTGGTTTACGATGCAAATCAAGAAGTAAGAGCATAATCGCATGCATGG
CGTAGGGATATATAACAAGAATATGAACAACATGTCAACACAGCAAGGCAAATTAAGGCATACAT
TTGTATACACATAGAAATTACCTCACATTATATTATGTTAAAACTAAAGCTAAAACCCAAAATTG
Found at i:36743040 original size:20 final size:20
Alignment explanation
Indices: 36743017--36743064 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
36743007 TATTACGTTG
36743017 AATTAATATA-TATAAAATAA
1 AATTAA-ATAGTATAAAATAA
**
36743037 AATTAAATAGTATATTATAA
1 AATTAAATAGTATAAAATAA
36743057 AATTAAAT
1 AATTAAAT
36743065 GATAACATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 3 0.12
20 22 0.88
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (20 bp):
AATTAAATAGTATAAAATAA
Found at i:36743075 original size:25 final size:23
Alignment explanation
Indices: 36743022--36743086 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 23
36743012 CGTTGAATTA
* *
36743022 ATATATATAAAATAAAATTAAAT
1 ATATATATAAAATAAAATGAAAC
*
36743045 AGTATATTATAAAATTAAATGATAAC
1 A-TATA-TATAAAATAAAATGA-AAC
*
36743071 ATATA-ATAATATAAAA
1 ATATATATAAAATAAAA
36743087 AAGAAATAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
23 10 0.29
24 4 0.12
25 17 0.50
26 3 0.09
ACGTcount: A:0.62, C:0.02, G:0.03, T:0.34
Consensus pattern (23 bp):
ATATATATAAAATAAAATGAAAC
Found at i:36743171 original size:3 final size:3
Alignment explanation
Indices: 36743163--36743196 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
36743153 TATAATAGTG
36743163 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
36743197 CAAGAGTACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:36744797 original size:44 final size:44
Alignment explanation
Indices: 36744712--36744798 Score: 111
Period size: 44 Copynumber: 2.0 Consensus size: 44
36744702 ATCATTTTAA
* * * *
36744712 TCTGCTCCACTACAACTTCAGAGAGATAGGATTGGTTTCTTCAG
1 TCTGCTCCACTACAACTTCAGAGAGATAAGACTAGTGTCTTCAG
** *
36744756 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTAGTGTCTTCA
1 TCTGCTCCACTACAACTTCAGAGAGATAAGACTAGTGTCTTCA
36744799 ATCTTAACGT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTACAACTTCAGAGAGATAAGACTAGTGTCTTCAG
Found at i:36744971 original size:51 final size:51
Alignment explanation
Indices: 36744816--36745026 Score: 189
Period size: 51 Copynumber: 4.2 Consensus size: 51
36744806 CGTCAGAGAT
* ** * * * *
36744816 ATAAGATTAGCTATCTTCAGCTTTAATCTTCTCCACTGGAATGCCAAGTAA
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACGCCAAGGAA
* * * * * *
36744867 ATGAGACTCGCTACCTTTAGCTTTAATCTACT--AC-G--ACGCCAGGGAG
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACGCCAAGGAA
* * *
36744913 ATAAGATTTGCTGCCTTCAGCTTTAATCTGCTCCATTGCAACGCCAAGGAA
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACGCCAAGGAA
* * * * * *
36744964 ATGAGATTCGTTGCCTTAAGCTTTAATCTATTCCACTGCAACACCAGGGAA
1 ATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACGCCAAGGAA
36745015 ATAAGATTCGCT
1 ATAAGATTCGCT
36745027 TTCTTCGACC
Statistics
Matches: 125, Mismatches: 30, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
46 33 0.26
48 2 0.02
49 3 0.02
51 87 0.70
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.30
Consensus pattern (51 bp):
ATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCACTGCAACGCCAAGGAA
Found at i:36744986 original size:97 final size:97
Alignment explanation
Indices: 36744816--36744993 Score: 248
Period size: 97 Copynumber: 1.8 Consensus size: 97
36744806 CGTCAGAGAT
* * * * *
36744816 ATAAGATTAGCTATCTTCAGCTTTAATCTTCTCCACTGGAATGCCAAGTAAATGAGACTCGCTAC
1 ATAAGATTAGCTACCTTCAGCTTTAATCTGCTCCACTGCAACGCCAAGGAAATGAGACTCGCTAC
*
36744881 CTTTAGCTTTAATCTACTACGACGCCAGGGAG
66 CTTAAGCTTTAATCTACTACGACGCCAGGGAG
* * * * * *
36744913 ATAAGATTTGCTGCCTTCAGCTTTAATCTGCTCCATTGCAACGCCAAGGAAATGAGATTCGTTGC
1 ATAAGATTAGCTACCTTCAGCTTTAATCTGCTCCACTGCAACGCCAAGGAAATGAGACTCGCTAC
36744978 CTTAAGCTTTAATCTA
66 CTTAAGCTTTAATCTA
36744994 TTCCACTGCA
Statistics
Matches: 69, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
97 69 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.31
Consensus pattern (97 bp):
ATAAGATTAGCTACCTTCAGCTTTAATCTGCTCCACTGCAACGCCAAGGAAATGAGACTCGCTAC
CTTAAGCTTTAATCTACTACGACGCCAGGGAG
Found at i:36745364 original size:89 final size:89
Alignment explanation
Indices: 36745213--36746001 Score: 821
Period size: 89 Copynumber: 8.9 Consensus size: 89
36745203 ATCTTCAACA
* * * * * * * * *
36745213 TACTCCACTACAAACTCAGAGAGGTAAGGCTAGTGTTTTTGATCTACTTCGCTGCCAGTACAGGA
1 TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGA
* * * *
36745278 AGACAAGATTTACTGTTTTTAGTC
66 AGACAAGATCTGCTATTTTCAGTC
* * ** * * * *
36745302 TACTCCGCTGTAAACTAAAAGAGGCAAGGATGGTGTCATCAATCTACTTCGCTGCCAATACAGGA
1 TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGA
* **
36745367 AGATAAGATCTGCTATCCTCAGTC
66 AGACAAGATCTGCTATTTTCAGTC
* * *
36745391 TGCTCCGCTACAAACTCAGGGAGGTC-AGGCTGGTGTCTTCGATCTGCTTCGCTGCCAGTACAGG
1 TACTCCGCTGCAAACTCAGGGAGG-CAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGG
* *
36745455 AAGACAAGATCTGCTATCTTCAATC
65 AAGACAAGATCTGCTATTTTCAGTC
* ** * * * *
36745480 TACTCCGCTGCAAACTAAGGGAGGTTAGGCGGGTGTCTTGGATCTGCTTCGCTACCAATACAAGA
1 TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGA
*
36745545 AGACAAGATCTGCTATCTTCAGTC
66 AGACAAGATCTGCTATTTTCAGTC
* * * * * * *
36745569 TACTCCGCTGTAAATTTAGGGAGGTC-AGGTTGGTATCTTCGATCTGCTTCGCTGCCAGTATAGG
1 TACTCCGCTGCAAACTCAGGGAGG-CAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGG
36745633 AAGACAAGATCTG-TCATTTTCAGTC
65 AAGACAAGATCTGCT-ATTTTCAGTC
* * * *
36745658 TACTCTGCTGTAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCGCTACCAATACAGGA
1 TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGA
* * * *
36745723 AGATAAGATCTACTGTTGTCAGTC
66 AGACAAGATCTGCTATTTTCAGTC
* * ** * * * *
36745747 TATTCTGCTGCAAACTCAGGGAGATAAGACTGGTGTCTTCGATCTGCTTCGCTACCAGTATAGGA
1 TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGA
* * *
36745812 AGATAGGATCTGTTATTTTCTA-TC
66 AGACAAGATCTGCTATTTTC-AGTC
* * * * *
36745836 TACTCTGTTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATTTTCTTCGCTGCCAATATAGGA
1 TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGA
36745901 AGACAAGATCTGCTATTTTCAGTC
66 AGACAAGATCTGCTATTTTCAGTC
* * * * * * * *
36745925 TGCTCTGCTACAAAATCAGGGAGGCAAGGCTGGCGTCTTCGATCTGTTTCGCTGTCAATAGAGGA
1 TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGA
*
36745990 AGACAAGTTCTG
66 AGACAAGATCTG
36746002 TTATCTTCTT
Statistics
Matches: 586, Mismatches: 106, Indels: 16
0.83 0.15 0.02
Matches are distributed among these distances:
88 3 0.01
89 580 0.99
90 3 0.01
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.29
Consensus pattern (89 bp):
TACTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGA
AGACAAGATCTGCTATTTTCAGTC
Found at i:36745678 original size:267 final size:267
Alignment explanation
Indices: 36745203--36746009 Score: 924
Period size: 267 Copynumber: 3.0 Consensus size: 267
36745193 AGGATCTACA
* * * * * * * *
36745203 ATCTTCAA-CATACTCCACTACAAACTCAGAGAGGTAAGGCTAGTGTTTTTGATCTACTTCGCTG
1 ATCTTCAATC-TACTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGATCTGCTTCGCTA
* * * * **
36745267 CCAGTACAGGAAGACAAGATTTACTGTTTTTAGTCTACTCCGCTGTAAACTAAAAGAGGCAAGGA
65 CCAGTACAGGAAGACAAGATCTGCTATTTTCAGTCTACTCCGCTGTAAACTAAGGGAGGCAAGGA
* * * * ** *
36745332 TGGTGTCATCAATCTACTTCGCTGCCAATACAGGAAGATAAGATCTGCTATCCTCAGTCTGCTCC
130 TGGTGTCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAGTCTGCTCT
*
36745397 GCTACAAACTCAGGGAGGTC-AGGCTGGTGTCTTCGATCTGCTTCGCTGCCAGTACAGGAAGACA
195 GCTACAAACTCAGGGAGG-CAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGAAGACA
36745461 AGATCTGCT
259 AGATCTGCT
* * * *
36745470 ATCTTCAATCTACTCCGCTGCAAACTAAGGGAGGTTAGGCGGGTGTCTTGGATCTGCTTCGCTAC
1 ATCTTCAATCTACTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGATCTGCTTCGCTAC
* * * * * *
36745535 CAATACAAGAAGACAAGATCTGCTATCTTCAGTCTACTCCGCTGTAAATTTAGGGAGGTC-AGGT
66 CAGTACAGGAAGACAAGATCTGCTATTTTCAGTCTACTCCGCTGTAAACTAAGGGAGG-CAAGGA
* * * *
36745599 TGGTATCTTCGATCTGCTTCGCTGCCAGTATAGGAAGACAAGATCTG-TCATTTTCAGTCTACTC
130 TGGTGTCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTGCT-ATTTTCAGTCTGCTC
** * * *
36745663 TGCTGTAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCGCTACCAATACAGGAAGATA
194 TGCTACAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGAAGACA
*
36745728 AGATCTACT
259 AGATCTGCT
* * * * * *
36745737 GT-TGTCAGTCTATTCTGCTGCAAACTCAGGGAGATAAGACTGGTGTCTTCGATCTGCTTCGCTA
1 ATCT-TCAATCTACTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGATCTGCTTCGCTA
* * * * * * * *
36745801 CCAGTATAGGAAGATAGGATCTGTTATTTTCTA-TCTACTCTGTTGCAAACTCAGGGAGGCAAGG
65 CCAGTACAGGAAGACAAGATCTGCTATTTTC-AGTCTACTCCGCTGTAAACTAAGGGAGGCAAGG
* * *
36745865 CTGGTGTCTTCGATTTTCTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAGTCTGCTC
129 ATGGTGTCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAGTCTGCTC
* * * * *
36745930 TGCTACAAAATCAGGGAGGCAAGGCTGGCGTCTTCGATCTGTTTCGCTGTCAATAGAGGAAGACA
194 TGCTACAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGAAGACA
* *
36745995 AGTTCTGTT
259 AGATCTGCT
36746004 ATCTTC
1 ATCTTC
36746010 TTCAATCCAC
Statistics
Matches: 448, Mismatches: 83, Indels: 18
0.82 0.15 0.03
Matches are distributed among these distances:
266 4 0.01
267 439 0.98
268 5 0.01
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (267 bp):
ATCTTCAATCTACTCCGCTGCAAACTCAGGGAGGTAAGGCTGGTGTCTTCGATCTGCTTCGCTAC
CAGTACAGGAAGACAAGATCTGCTATTTTCAGTCTACTCCGCTGTAAACTAAGGGAGGCAAGGAT
GGTGTCTTCGATCTACTTCGCTGCCAATATAGGAAGACAAGATCTGCTATTTTCAGTCTGCTCTG
CTACAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGAAGACAAG
ATCTGCT
Found at i:36747290 original size:44 final size:45
Alignment explanation
Indices: 36747242--36747326 Score: 138
Period size: 44 Copynumber: 1.9 Consensus size: 45
36747232 TTCTTATTAT
*
36747242 TTTTTTATGACTCAAAGCGCCC-TTTGCAGG-TTTTCACCTTAGTC
1 TTTTTTAGGACTCAAAGCGCCCTTTTGC-GGATTTTCACCTTAGTC
36747286 TTTTTTAGGACTCAAAGCGCCCTTTTGCGGATTTTCACCTT
1 TTTTTTAGGACTCAAAGCGCCCTTTTGCGGATTTTCACCTT
36747327 GGTCCCTCCT
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
44 23 0.61
45 15 0.39
ACGTcount: A:0.18, C:0.25, G:0.16, T:0.41
Consensus pattern (45 bp):
TTTTTTAGGACTCAAAGCGCCCTTTTGCGGATTTTCACCTTAGTC
Found at i:36747349 original size:11 final size:11
Alignment explanation
Indices: 36747337--36747372 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
36747327 GGTCCCTCCT
36747337 TTTTC-TTTTC
1 TTTTCTTTTTC
36747347 TTTTCTTTTTC
1 TTTTCTTTTTC
*
36747358 TTCTCTTTTTC
1 TTTTCTTTTTC
36747369 TTTT
1 TTTT
36747373 TTTCATCATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
10 5 0.22
11 18 0.78
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTCTTTTTC
Found at i:36747356 original size:16 final size:17
Alignment explanation
Indices: 36747335--36747373 Score: 62
Period size: 16 Copynumber: 2.4 Consensus size: 17
36747325 TTGGTCCCTC
*
36747335 CTTTTTCTTTTC-TTTT
1 CTTTTTCTTCTCTTTTT
36747351 CTTTTTCTTCTCTTTTT
1 CTTTTTCTTCTCTTTTT
36747368 CTTTTT
1 CTTTTT
36747374 TTCATCATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 11 0.52
17 10 0.48
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (17 bp):
CTTTTTCTTCTCTTTTT
Found at i:36747374 original size:19 final size:19
Alignment explanation
Indices: 36747336--36747395 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
36747326 TGGTCCCTCC
*
36747336 TTTTTCTTTTC-TTTTC--
1 TTTTTCTTCTCTTTTTCTT
36747352 TTTTTCTTCTCTTTTTCTT
1 TTTTTCTTCTCTTTTTCTT
*
36747371 TTTTTCATCAT-TTTTTCCTT
1 TTTTTCTTC-TCTTTTT-CTT
36747391 TTTTT
1 TTTTT
36747396 TTGAAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
16 10 0.27
17 5 0.14
19 13 0.35
20 9 0.24
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.78
Consensus pattern (19 bp):
TTTTTCTTCTCTTTTTCTT
Found at i:36747384 original size:17 final size:17
Alignment explanation
Indices: 36747335--36747384 Score: 59
Period size: 17 Copynumber: 3.0 Consensus size: 17
36747325 TTGGTCCCTC
*
36747335 CTTTTTCTTTTC-TTTT
1 CTTTTTCTTCTCATTTT
*
36747351 CTTTTTCTTCTCTTTTT
1 CTTTTTCTTCTCATTTT
36747368 CTTTTT-TTCATCATTTT
1 CTTTTTCTTC-TCATTTT
36747385 TTCCTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
16 14 0.47
17 16 0.53
ACGTcount: A:0.04, C:0.20, G:0.00, T:0.76
Consensus pattern (17 bp):
CTTTTTCTTCTCATTTT
Found at i:36754798 original size:3 final size:3
Alignment explanation
Indices: 36754772--36754856 Score: 98
Period size: 3 Copynumber: 28.3 Consensus size: 3
36754762 ATATGAAAAT
* * * * * * *
36754772 ATA ATA GTA ATA GTA ATC ATA ATA ATA ATG ATC ATG ATC ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
36754820 ATA ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
36754857 CAAGAGTACA
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 69 1.00
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:36766683 original size:26 final size:25
Alignment explanation
Indices: 36766654--36766718 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 25
36766644 CTCAAGGTTG
*
36766654 GTTATCTTGTTAGGTTCGCCTAGTTA
1 GTTAT-TTGTTAGGTTCGCCAAGTTA
**
36766680 GTTAATTTAATAGGTTCGCCAAGTTA
1 GTT-ATTTGTTAGGTTCGCCAAGTTA
36766706 GTTAGTTTGTTAG
1 GTTA-TTTGTTAG
36766719 ATTCTTAAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
25 1 0.03
26 29 0.91
27 2 0.06
ACGTcount: A:0.22, C:0.11, G:0.23, T:0.45
Consensus pattern (25 bp):
GTTATTTGTTAGGTTCGCCAAGTTA
Found at i:36791435 original size:51 final size:50
Alignment explanation
Indices: 36791306--36791498 Score: 262
Period size: 51 Copynumber: 3.8 Consensus size: 50
36791296 ATTATTATCA
* *
36791306 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCAA-ACT
1 TTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAATACT
* *
36791355 TTCCGGTTCACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAATACT
1 TT-CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACC-AATACT
* * * *
36791407 TTCGGTACACGTAGTAGCTTGCACATAGTACTACACATGTGACCATTATCT
1 TTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAATA-CT
* *
36791458 ATCGATACACGTAGTAGCCTGCACTTAGTACTACACACGTG
1 TTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTG
36791499 TTTATAGGGA
Statistics
Matches: 127, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
49 2 0.02
50 41 0.32
51 79 0.62
52 5 0.04
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
TTCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAATACT
Found at i:36793895 original size:105 final size:106
Alignment explanation
Indices: 36793694--36794376 Score: 678
Period size: 105 Copynumber: 6.5 Consensus size: 106
36793684 GGTTGTGATA
* * * * * * *
36793694 TTAAATCAG-CGAGCCTTAATAATATCAACTGTGAACGTAGGTCAGCAAGCTG-CTAGGAGTTGC
1 TTAAATCAGACTAACCTTTATAATATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTGC
* * ** *
36793757 GATCTTAAATCAG-TGAACTCAAATAAACTTAGGTTGTGAAC
66 GATCTTAAATCAGCT-AACTCAAAGATAGATAGGTTGCGAAC
* * *
36793798 TTAAATCAGA-TAACCTTTATAACATCAGCCGTGAACGTAGGTCAGT-GAGCTATTTAGGAGTTG
1 TTAAATCAGACTAACCTTTATAATATCAGCTGTGAACGTAGGTCA-TCGAGCTGTTTAGGAGTTG
* *
36793861 CGATCTTAAATCAGCTAACTCAAAGATAGATAGGTTACGACC
65 CGATCTTAAATCAGCTAACTCAAAGATAGATAGGTTGCGAAC
* * * *
36793903 TTAAATCA-ATTACCCTTTATAATATCAACTGTGAACGTAGGTCATCGAGCTGTTTAGGAGCTGC
1 TTAAATCAGACTAACCTTTATAATATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTGC
* *
36793967 GATATTAAATCAGCTAACTTAAAGATAGATAGGTTGCGATA-
66 GATCTTAAATCAGCTAACTCAAAGATAGATAGGTTGCGA-AC
* * * * *
36794008 TTAAATCA-ACTAACCTTTATAATATCAGCTGTGAATGTAGTTCATCGAGTTGTTTAGGCGTTAC
1 TTAAATCAGACTAACCTTTATAATATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTGC
* * *
36794072 GATCTTAAATCAGCTAACTCAAAGATAAATAGGCTAC-AATC
66 GATCTTAAATCAGCTAACTCAAAGATAGATAGGTTGCGAA-C
* * *
36794113 TTAAATCA-ACCAACCTTTATAATATCATCTGTGAACGTAGGTCATCGAGTTGTTTAGGAG--GC
1 TTAAATCAGACTAACCTTTATAATATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTGC
* * * *
36794175 ATCATCTTAAATGAACTAACTTAAAGATAGATAGGTTGCGATA-
66 --GATCTTAAATCAGCTAACTCAAAGATAGATAGGTTGCGA-AC
* * * * * * *
36794218 TTAGATCAG-CTAACCTTTATAATATTAGTTGTAAACGTAAGTCGTCGAGTTGTTTAGGAGTTGC
1 TTAAATCAGACTAACCTTTATAATATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTGC
* * * *
36794282 GATCTTAAATTAGCTAACTCAAAGATTGATAGGTTGTGATC
66 GATCTTAAATCAGCTAACTCAAAGATAGATAGGTTGCGAAC
* * * * * * *
36794323 TTAAATCAG-CGAATC-ATAAATATATCAGCTATGAACATAAGTCATCGAGCTGTT
1 TTAAATCAGACTAACCTTTATA-ATATCAGCTGTGAACGTAGGTCATCGAGCTGTT
36794377 AGTAAACCGA
Statistics
Matches: 480, Mismatches: 81, Indels: 35
0.81 0.14 0.06
Matches are distributed among these distances:
103 2 0.00
104 47 0.10
105 426 0.89
106 2 0.00
107 3 0.01
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (106 bp):
TTAAATCAGACTAACCTTTATAATATCAGCTGTGAACGTAGGTCATCGAGCTGTTTAGGAGTTGC
GATCTTAAATCAGCTAACTCAAAGATAGATAGGTTGCGAAC
Found at i:36794082 original size:210 final size:209
Alignment explanation
Indices: 36793707--36794330 Score: 758
Period size: 210 Copynumber: 3.0 Consensus size: 209
36793697 AATCAGCGAG
* * * * *
36793707 CCTTAATAATATCAACTGTGAACGTAGGTCAGCAAGCTG-CTAGGAGTTGCGATCTTAAATCAG-
1 CCTTTATAATATCAACTGTGAACGTAGGTCATCGAGCTGTTTAGGAGCTGCGATCTTAAATCAGC
* * * ** * * *
36793770 TGAACTCAAATAAACTTAGGTTGTGA-ACTTAAATCAGA-TAACCTTTATAACATCAGCCGTGAA
66 T-AACTTAAAGATAGATAGGTTGCGATA-TTAAATCA-ACTAACCTTTATAATATCAGCTGTGAA
* *
36793833 CGTAGGTCAGT-GAGCTATTTAGGAGTTGCGATCTTAAATCAGCTAACTCAAAGATAGATAGGTT
128 CGTA-GTCA-TCGAGTTGTTTAGGAGTTGCGATCTTAAATCAGCTAACTCAAAGATAGATAGGTT
* ** *
36793897 ACGACCTTAAATCAATTAC
191 ACGATCTTAAATCAACCAA
*
36793916 CCTTTATAATATCAACTGTGAACGTAGGTCATCGAGCTGTTTAGGAGCTGCGATATTAAATCAGC
1 CCTTTATAATATCAACTGTGAACGTAGGTCATCGAGCTGTTTAGGAGCTGCGATCTTAAATCAGC
*
36793981 TAACTTAAAGATAGATAGGTTGCGATATTAAATCAACTAACCTTTATAATATCAGCTGTGAATGT
66 TAACTTAAAGATAGATAGGTTGCGATATTAAATCAACTAACCTTTATAATATCAGCTGTGAACGT
* * * * *
36794046 AGTTCATCGAGTTGTTTAGGCGTTACGATCTTAAATCAGCTAACTCAAAGATAAATAGGCTACAA
131 AG-TCATCGAGTTGTTTAGGAGTTGCGATCTTAAATCAGCTAACTCAAAGATAGATAGGTTACGA
36794111 TCTTAAATCAACCAA
195 TCTTAAATCAACCAA
* * *
36794126 CCTTTATAATATCATCTGTGAACGTAGGTCATCGAGTTGTTTAGGAGGCAT-C-ATCTTAAATGA
1 CCTTTATAATATCAACTGTGAACGTAGGTCATCGAGCTGTTTAGGA-GC-TGCGATCTTAAATCA
* * * * * *
36794189 ACTAACTTAAAGATAGATAGGTTGCGATATTAGATCAGCTAACCTTTATAATATTAGTTGTAAAC
64 GCTAACTTAAAGATAGATAGGTTGCGATATTAAATCAACTAACCTTTATAATATCAGCTGTGAAC
* * * **
36794254 GTAAGTCGTCGAGTTGTTTAGGAGTTGCGATCTTAAATTAGCTAACTCAAAGATTGATAGGTTGT
129 GT-AGTCATCGAGTTGTTTAGGAGTTGCGATCTTAAATCAGCTAACTCAAAGATAGATAGGTTAC
36794319 GATCTTAAATCA
193 GATCTTAAATCA
36794331 GCGAATCATA
Statistics
Matches: 359, Mismatches: 47, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
209 39 0.11
210 312 0.87
211 7 0.02
212 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (209 bp):
CCTTTATAATATCAACTGTGAACGTAGGTCATCGAGCTGTTTAGGAGCTGCGATCTTAAATCAGC
TAACTTAAAGATAGATAGGTTGCGATATTAAATCAACTAACCTTTATAATATCAGCTGTGAACGT
AGTCATCGAGTTGTTTAGGAGTTGCGATCTTAAATCAGCTAACTCAAAGATAGATAGGTTACGAT
CTTAAATCAACCAA
Found at i:36794589 original size:75 final size:74
Alignment explanation
Indices: 36794316--36794591 Score: 236
Period size: 75 Copynumber: 3.7 Consensus size: 74
36794306 ATTGATAGGT
* * * *
36794316 TGTGATCTTAAATCAGCGAATCATAAATATATCAGCTATGAACATAAGTCATCGAGCTGTTAGTA
1 TGTGATCTTAAATCAGCGAATCATAAAGATATCAGCTATAAACATAGGTCATCGAGCTGTTAGAA
*
36794381 AACCGAGGG
66 AACTGAGGG
* * * * * *
36794390 T-TACGATCTTAAATCAGC-AGACCATAAAGATATCAGCTGTGAATC-TAGATCATTGAGTTGTT
1 TGT--GATCTTAAATCAGCGA-ATCATAAAGATATCAGCTAT-AAACATAGGTCATCGAGCTGTT
*
36794452 AGAAAACTGAGAG
62 AGAAAACTGAGGG
* * * ** * * * * **
36794465 TTTCGATCTTAAATCAGCGAATCATAAATATAACAAATGTGAATATAGGTCATCAAGCTAATAGA
1 TGT-GATCTTAAATCAGCGAATCATAAAGATATCAGCTATAAACATAGGTCATCGAGCTGTTAGA
36794530 AAACTGAGGG
65 AAACTGAGGG
* *
36794540 TCGTGATCTTAAATCAGC-AAACAGTAAAGATATCAGCTATAAACGTAGGTCA
1 T-GTGATCTTAAATCAGCGAATCA-TAAAGATATCAGCTATAAACATAGGTCA
36794592 GCTAGTTGTT
Statistics
Matches: 156, Mismatches: 37, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
73 1 0.01
74 7 0.04
75 143 0.92
76 5 0.03
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (74 bp):
TGTGATCTTAAATCAGCGAATCATAAAGATATCAGCTATAAACATAGGTCATCGAGCTGTTAGAA
AACTGAGGG
Found at i:36794599 original size:150 final size:150
Alignment explanation
Indices: 36794319--36794601 Score: 347
Period size: 150 Copynumber: 1.9 Consensus size: 150
36794309 GATAGGTTGT
* ** * ** *
36794319 GATCTTAAATCAGCGAATCATAAATATATCAGCTATGAACATAAGTCATCGAGCTGTTAGTAAAC
1 GATCTTAAATCAGCGAATCATAAATATAACAAATATGAACATAAGTCATCAAGCTAATAGAAAAC
* * * * *
36794384 CGAGGGTTACGATCTTAAATCAGCAGACCATAAAGATATCAGCTGTGAATCTAGATCATTGAGTT
66 CGAGGGTCACGATCTTAAATCAGCAGAACATAAAGATATCAGCTATGAAACTAGATCACTGAGTT
36794449 GTTAGAAAACTGAGAGTTTC
131 GTTAGAAAACTGAGAGTTTC
* * *
36794469 GATCTTAAATCAGCGAATCATAAATATAACAAATGTGAATATAGGTCATCAAGCTAATAGAAAAC
1 GATCTTAAATCAGCGAATCATAAATATAACAAATATGAACATAAGTCATCAAGCTAATAGAAAAC
* ** *
36794534 TGAGGGTCGTGATCTTAAATCAGCA-AACAGTAAAGATATCAGCTAT-AAACGTAGGTCAGCT-A
66 CGAGGGTCACGATCTTAAATCAGCAGAACA-TAAAGATATCAGCTATGAAAC-TAGATCA-CTGA
36794596 GTTGTT
128 GTTGTT
36794602 TTATATGTTT
Statistics
Matches: 111, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
149 6 0.05
150 104 0.94
151 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (150 bp):
GATCTTAAATCAGCGAATCATAAATATAACAAATATGAACATAAGTCATCAAGCTAATAGAAAAC
CGAGGGTCACGATCTTAAATCAGCAGAACATAAAGATATCAGCTATGAAACTAGATCACTGAGTT
GTTAGAAAACTGAGAGTTTC
Found at i:36800454 original size:15 final size:15
Alignment explanation
Indices: 36800434--36800465 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
36800424 TTGAAAGTCT
36800434 TTTGAAGGTCAGGTA
1 TTTGAAGGTCAGGTA
36800449 TTTGAAGGTCAGGTA
1 TTTGAAGGTCAGGTA
36800464 TT
1 TT
36800466 CTATCAACGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.25, C:0.06, G:0.31, T:0.38
Consensus pattern (15 bp):
TTTGAAGGTCAGGTA
Found at i:36801438 original size:14 final size:13
Alignment explanation
Indices: 36801419--36801444 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
36801409 TCTGTCACCC
36801419 TTTTTTTTAAATG
1 TTTTTTTTAAATG
36801432 TTTTTTTTAAATG
1 TTTTTTTTAAATG
36801445 CAAAATTCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (13 bp):
TTTTTTTTAAATG
Found at i:36822284 original size:24 final size:23
Alignment explanation
Indices: 36822257--36822316 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 23
36822247 ATCATAATAT
*
36822257 TTTTATAAATATTTTAATTATTTA
1 TTTTATAAAT-TTTAAATTATTTA
36822281 TTTTATAGTAATTTTAAATTATTTA
1 TTTTATA--AATTTTAAATTATTTA
*
36822306 TTATAATAAAT
1 TT-TTATAAAT
36822317 GACAATCAAG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
24 10 0.32
25 14 0.45
26 7 0.23
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
TTTTATAAATTTTAAATTATTTA
Found at i:36822669 original size:24 final size:24
Alignment explanation
Indices: 36822642--36822703 Score: 61
Period size: 29 Copynumber: 2.4 Consensus size: 24
36822632 TCGCGACTTC
*
36822642 GTCATGACGTGGTTATCTCAGTAT
1 GTCATGACGTGGTCATCTCAGTAT
*
36822666 GTCATGTCATGGTGTGGTCATCTCAGTAT
1 GTCATG--A---CGTGGTCATCTCAGTAT
36822695 GTCATGACG
1 GTCATGACG
36822704 ACGTTGCAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
24 7 0.23
26 1 0.03
27 1 0.03
29 21 0.70
ACGTcount: A:0.19, C:0.18, G:0.27, T:0.35
Consensus pattern (24 bp):
GTCATGACGTGGTCATCTCAGTAT
Found at i:36833829 original size:50 final size:50
Alignment explanation
Indices: 36833714--36833856 Score: 187
Period size: 50 Copynumber: 2.8 Consensus size: 50
36833704 GATAATAACA
**
36833714 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATCGG
* * * ** *
36833765 TGCCCATGCTATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* *
36833815 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
36833857 TTACCCAAAT
Statistics
Matches: 78, Mismatches: 14, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 46 0.59
51 32 0.41
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:36835188 original size:29 final size:29
Alignment explanation
Indices: 36835151--36835210 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
36835141 CCTCTTCTGG
*
36835151 TTCCTATGTCCCTTCCTCAATCCCGTGCT
1 TTCCCATGTCCCTTCCTCAATCCCGTGCT
*
36835180 TTCCCATGTCGCTTCCTCAATCCCGTGCT
1 TTCCCATGTCCCTTCCTCAATCCCGTGCT
36835209 TT
1 TT
36835211 TGCCATAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.10, C:0.40, G:0.12, T:0.38
Consensus pattern (29 bp):
TTCCCATGTCCCTTCCTCAATCCCGTGCT
Found at i:36842578 original size:3 final size:3
Alignment explanation
Indices: 36842570--36842619 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
36842560 TTTAATTAGT
* * *
36842570 TTA TTA TTA TTG TTA TTA TTA CTA TTA TTA TTA TTA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36842618 TT
1 TT
36842620 CATACGAGGT
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:36842897 original size:18 final size:20
Alignment explanation
Indices: 36842852--36842898 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
36842842 TTCAAACTTC
36842852 CATATATGTGTATTTATTTTT
1 CATATATGTGTA-TTATTTTT
*
36842873 C-TTTATGTGTA-TA-TTTT
1 CATATATGTGTATTATTTTT
36842890 CATATATGT
1 CATATATGT
36842899 ATATGTATAC
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
17 5 0.22
18 8 0.35
20 9 0.39
21 1 0.04
ACGTcount: A:0.23, C:0.06, G:0.11, T:0.60
Consensus pattern (20 bp):
CATATATGTGTATTATTTTT
Found at i:36853464 original size:24 final size:24
Alignment explanation
Indices: 36853431--36853478 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
36853421 GCATGAGAAA
*
36853431 TTACCGTTCGCTCTCCTTGCCTAT
1 TTACCATTCGCTCTCCTTGCCTAT
*
36853455 TTACCATTCGCTCTTCTTGCCTAT
1 TTACCATTCGCTCTCCTTGCCTAT
36853479 CGAACATCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.10, C:0.35, G:0.10, T:0.44
Consensus pattern (24 bp):
TTACCATTCGCTCTCCTTGCCTAT
Found at i:36855321 original size:44 final size:44
Alignment explanation
Indices: 36855211--36855465 Score: 307
Period size: 44 Copynumber: 5.8 Consensus size: 44
36855201 CGGCGAATCT
*
36855211 TATCTCCCTGACCAGCAGCGGAATAGGTTGAAGATTGT-AGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
36855254 TATCTCCCTGACTAGCAGTGGAATAGGTTGAAGATTGTATGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * ** * * ***
36855298 TATTTCCCAGACCAATAGCGGAATAGGTGGAAGATCACAAGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
36855342 TATCTCCCTGACCAGCGGTGGAATAGGTTGAAGATTGTAGGTCC
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
**
36855386 TATGC-CCCTGACCAGCAGTGGAATAGGTTGAAGATTACAAGTCC
1 TAT-CTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* ** *
36855430 TATCTCCTTGACCAATAGTGGAATAGGTGGAAGATT
1 TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATT
36855466 AGTCTCTATA
Statistics
Matches: 176, Mismatches: 33, Indels: 5
0.82 0.15 0.02
Matches are distributed among these distances:
43 37 0.21
44 138 0.78
45 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.26
Consensus pattern (44 bp):
TATCTCCCTGACCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:36855430 original size:132 final size:131
Alignment explanation
Indices: 36855211--36855464 Score: 393
Period size: 132 Copynumber: 1.9 Consensus size: 131
36855201 CGGCGAATCT
*
36855211 TATCTCCCTGACCAGCAGCGGAATAGGTTGAAGATTGTAGTCCTATCTCCCTGACTAGCAGTGGA
1 TATCTCCCTGACCAGCAGCGGAATAGGTTGAAGATTGTAGTCCTATCTCCCTGACCAGCAGTGGA
** * *
36855276 ATAGGTTGAAGATTGTATGTCCTATTTCCCAGACCAATAGCGGAATAGGTGGAAGATCACAAGTC
66 ATAGGTTGAAGATTACAAGTCCTATCTCCCAGACCAATAGCGGAATAGGTGGAAGATCACAAGTC
36855341 C
131 C
* *
36855342 TATCTCCCTGACCAGCGGTGGAATAGGTTGAAGATTGTAGGTCCTATGC-CCCTGACCAGCAGTG
1 TATCTCCCTGACCAGCAGCGGAATAGGTTGAAGATTGTA-GTCCTAT-CTCCCTGACCAGCAGTG
** *
36855406 GAATAGGTTGAAGATTACAAGTCCTATCTCCTTGACCAATAGTGGAATAGGTGGAAGAT
64 GAATAGGTTGAAGATTACAAGTCCTATCTCCCAGACCAATAGCGGAATAGGTGGAAGAT
36855465 TAGTCTCTAT
Statistics
Matches: 111, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
131 37 0.33
132 73 0.66
133 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (131 bp):
TATCTCCCTGACCAGCAGCGGAATAGGTTGAAGATTGTAGTCCTATCTCCCTGACCAGCAGTGGA
ATAGGTTGAAGATTACAAGTCCTATCTCCCAGACCAATAGCGGAATAGGTGGAAGATCACAAGTC
C
Found at i:36856868 original size:3 final size:3
Alignment explanation
Indices: 36856860--36856915 Score: 76
Period size: 3 Copynumber: 18.7 Consensus size: 3
36856850 TTTAATTAGT
* * * *
36856860 TTA TTA TTA TTT TTA TTA TTA CTA TTA CTA TTA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
36856908 TTA TTA TT
1 TTA TTA TT
36856916 CATATGAGGT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:36876053 original size:27 final size:27
Alignment explanation
Indices: 36876022--36876199 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36876012 TAAATTGTAC
36876022 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
36876049 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36876075 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
36876103 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
36876131 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
36876158 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
36876185 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
36876200 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:36876136 original size:82 final size:81
Alignment explanation
Indices: 36876023--36876178 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36876013 AAATTGTACA
* *
36876023 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
36876087 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
36876104 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
36876169 TGCGAGTTGA
65 TGCGAATTGA
36876179 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:36876190 original size:82 final size:81
Alignment explanation
Indices: 36876019--36876199 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
36876009 GATTAAATTG
* *
36876019 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
36876084 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
36876100 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
36876164 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
36876182 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
36876200 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:36879122 original size:26 final size:26
Alignment explanation
Indices: 36879093--36879162 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
36879083 CGCAAGGTTG
* *
36879093 GTTAACTTGTTAGGTTCTCCTAGTTA
1 GTTAATTTGTTAGGTTCTCCAAGTTA
** *
36879119 GTTAATTTAATAGGTTCGCCAAGTTA
1 GTTAATTTGTTAGGTTCTCCAAGTTA
*
36879145 GTTAATTTGTTAGATTCT
1 GTTAATTTGTTAGGTTCT
36879163 TAAGATTCGC
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.24, C:0.11, G:0.19, T:0.46
Consensus pattern (26 bp):
GTTAATTTGTTAGGTTCTCCAAGTTA
Found at i:36896216 original size:17 final size:18
Alignment explanation
Indices: 36896184--36896218 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
36896174 CATTTCATGC
*
36896184 AGTGTTTATGGTTCCTTG
1 AGTGTTTATCGTTCCTTG
36896202 AGTGTTT-TCGTTCCTTG
1 AGTGTTTATCGTTCCTTG
36896219 TGGCACCGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.09, C:0.14, G:0.26, T:0.51
Consensus pattern (18 bp):
AGTGTTTATCGTTCCTTG
Done.