Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 120 of 182
Found at i:36905139 original size:43 final size:43
Alignment explanation
Indices: 36905085--36905200 Score: 169
Period size: 43 Copynumber: 2.7 Consensus size: 43
36905075 GAATCATATA
* *
36905085 CGATGCCAATGTCCCAAACATTGTCTTACACATTTTCTGACTT
1 CGATGCCAATGTCCCAAACATGGTCTTACACATTTTCTCACTT
* *
36905128 CGATGCTAATGTCCCAAACAAGGTCTTACACATTTTCTCACTT
1 CGATGCCAATGTCCCAAACATGGTCTTACACATTTTCTCACTT
* * *
36905171 TGATGCCAATGTCCCAGACATGGTTTTACA
1 CGATGCCAATGTCCCAAACATGGTCTTACA
36905201 TGAAATCACA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (43 bp):
CGATGCCAATGTCCCAAACATGGTCTTACACATTTTCTCACTT
Found at i:36907005 original size:17 final size:18
Alignment explanation
Indices: 36906977--36907011 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
36906967 TATCATGCTG
36906977 TAAAATTTAATATAATAA
1 TAAAATTTAATATAATAA
*
36906995 TAAAA-TTAATATTATAA
1 TAAAATTTAATATAATAA
36907012 ATTTGGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAAATTTAATATAATAA
Found at i:36907574 original size:33 final size:33
Alignment explanation
Indices: 36907537--36907716 Score: 114
Period size: 33 Copynumber: 5.4 Consensus size: 33
36907527 TGGCCTTGCC
*
36907537 ATGGTCTTACATTCATAGTGCCATAACCCAGTT
1 ATGGTCTTACATTCATAGTGCCATAACCCAGCT
* * *
36907570 ATGGTCTTACCA-TCAAAATGCCATAGCCCAGCT
1 ATGGTCTTA-CATTCATAGTGCCATAACCCAGCT
* * * *** * *
36907603 ATGGTCTTACATATAAATACTGTCATGGTCCAACC
1 ATGGTCTTACAT-T-CATAGTGCCATAACCCAGCT
* * *
36907638 ATGGTCTTGCATCCATAGTGCCATAACCCAGTT
1 ATGGTCTTACATTCATAGTGCCATAACCCAGCT
* * * * *
36907671 ATAGTCTTATCATTGGA-A-TGGCATAGCCCAACT
1 ATGGTCTTA-CATT-CATAGTGCCATAACCCAGCT
36907704 ATGGTCTTACATT
1 ATGGTCTTACATT
36907717 TAAACACTGC
Statistics
Matches: 109, Mismatches: 32, Indels: 13
0.71 0.21 0.08
Matches are distributed among these distances:
32 6 0.06
33 72 0.66
34 7 0.06
35 24 0.22
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.31
Consensus pattern (33 bp):
ATGGTCTTACATTCATAGTGCCATAACCCAGCT
Found at i:36907662 original size:101 final size:101
Alignment explanation
Indices: 36907489--36907742 Score: 327
Period size: 101 Copynumber: 2.5 Consensus size: 101
36907479 ATTTCCTTTG
* ** ** *
36907489 TGCCATAGTCCAACTATGGTCTTACATATGCAT--TGTCATGG-CCTTGCCATGGTCTTACATTC
1 TGCCATAGCCCAACTATGGTCTTACATATAAATACTGTCATGGTCC-AACCATGGTCTTACATCC
*
36907551 ATAGTGCCATAACCCAGTTATGGTCTTACCATCAAAA
65 ATAGTGCCATAACCCAGTTATAGTCTTACCATCAAAA
* *
36907588 TGCCATAGCCCAGCTATGGTCTTACATATAAATACTGTCATGGTCCAACCATGGTCTTGCATCCA
1 TGCCATAGCCCAACTATGGTCTTACATATAAATACTGTCATGGTCCAACCATGGTCTTACATCCA
* ***
36907653 TAGTGCCATAACCCAGTTATAGTCTTATCATTGGAA
66 TAGTGCCATAACCCAGTTATAGTCTTACCATCAAAA
* * *
36907689 TGGCATAGCCCAACTATGGTCTTACATTTAAACACTG-CATGGTCCAACCATGGT
1 TGCCATAGCCCAACTATGGTCTTACATATAAATACTGTCATGGTCCAACCATGGT
36907743 ATTATGTTTG
Statistics
Matches: 135, Mismatches: 17, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
99 29 0.21
100 17 0.13
101 87 0.64
102 2 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (101 bp):
TGCCATAGCCCAACTATGGTCTTACATATAAATACTGTCATGGTCCAACCATGGTCTTACATCCA
TAGTGCCATAACCCAGTTATAGTCTTACCATCAAAA
Found at i:36911099 original size:30 final size:31
Alignment explanation
Indices: 36911044--36911111 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
36911034 ACCCTTAAAA
** * **
36911044 TATTTACACTATTGGTCCTTCAAATTTTTTG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
36911075 TATTTACACT-TTAATCCCTCAAATTTTGAG
1 TATTTACACTATTAATCCCTCAAATTTTGAG
36911105 TATTTAC
1 TATTTAC
36911112 TCTTAGGCAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 22 0.69
31 10 0.31
ACGTcount: A:0.26, C:0.18, G:0.07, T:0.49
Consensus pattern (31 bp):
TATTTACACTATTAATCCCTCAAATTTTGAG
Found at i:36920342 original size:21 final size:22
Alignment explanation
Indices: 36920305--36920347 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
36920295 AAATAGGGAG
36920305 AAAACAACAAGAAAATAACATT
1 AAAACAACAAGAAAATAACATT
*
36920327 AAAAGAACAA-AAAATAACATT
1 AAAACAACAAGAAAATAACATT
36920348 TTTTTGTCCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.70, C:0.12, G:0.05, T:0.14
Consensus pattern (22 bp):
AAAACAACAAGAAAATAACATT
Found at i:36932199 original size:27 final size:27
Alignment explanation
Indices: 36932169--36932346 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36932159 ATATTGAGTC
* * * *
36932169 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36932196 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36932223 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36932251 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36932278 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36932305 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36932332 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36932347 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36932308 original size:82 final size:81
Alignment explanation
Indices: 36932190--36932345 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36932180 TGCTATATAA
* *
36932190 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36932255 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36932272 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36932336 CACTTAGTGC
65 CACTTAGTGC
36932346 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36940262 original size:27 final size:27
Alignment explanation
Indices: 36940232--36940409 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
36940222 ATATTGAGTC
* * * *
36940232 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
36940259 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36940286 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
36940314 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
36940341 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
36940368 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
36940395 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
36940410 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:36940371 original size:82 final size:81
Alignment explanation
Indices: 36940253--36940408 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
36940243 TGCTATATAA
* *
36940253 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
36940318 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
36940335 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
36940399 CACTTAGTGC
65 CACTTAGTGC
36940409 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:36961755 original size:26 final size:26
Alignment explanation
Indices: 36961726--36961795 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
36961716 TGCAAGGTTG
* *
36961726 GTTAACTTGTTAGGTTCTCCTAGTTA
1 GTTAATTTGTTAGGTTCTCCAAGTTA
** *
36961752 GTTAATTTAATAGGTTCGCCAAGTTA
1 GTTAATTTGTTAGGTTCTCCAAGTTA
*
36961778 GTTAATTTGTTAGATTCT
1 GTTAATTTGTTAGGTTCT
36961796 TAAGATTCGT
Statistics
Matches: 35, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 35 1.00
ACGTcount: A:0.24, C:0.11, G:0.19, T:0.46
Consensus pattern (26 bp):
GTTAATTTGTTAGGTTCTCCAAGTTA
Found at i:36976059 original size:39 final size:39
Alignment explanation
Indices: 36975895--36976077 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
36975885 TTGAATGCTG
* * * * * * *
36975895 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
36975935 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
36975975 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
36976015 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
36976054 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
36976078 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:36976097 original size:79 final size:80
Alignment explanation
Indices: 36975931--36976112 Score: 183
Period size: 79 Copynumber: 2.3 Consensus size: 80
36975921 GCTAAGTGAA
* * *
36975931 TATATCCGGATTAAGATCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGC
1 TATATCCGGATTAAGATCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
** ** *
36975996 ATTCGTGCGAGTTGT
66 ATTCGAACGAGGAGC
* * * * * *
36976011 TAAATCCGGGTTATG-TCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 TATATCCGGATTAAGAT-CCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
*
36976074 CATTTGAACGAGGAGC
65 CATTCGAACGAGGAGC
36976090 TATATCCGG-TTAA-ATTCCGAAGG
1 TATATCCGGATTAAGA-TCCGAAGG
36976113 TACGTGATTT
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
78 10 0.12
79 53 0.65
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGATTAAGATCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:36987874 original size:92 final size:92
Alignment explanation
Indices: 36987724--36987923 Score: 212
Period size: 92 Copynumber: 2.2 Consensus size: 92
36987714 TATTTGATTA
* * * *
36987724 TGCCATAAA-AAAGGCGCCACCAGTGTAATTTGCCACACTTTTTTAATTGTTTTGTTTT-ATTTC
1 TGCCATAAAGAATGGCTCAACCAGTGTAATTTGCCACACTTTTTTAA-TATTTTGTTTTAATTT-
*
36987787 AAAATTTAGAA-TATTATTTTACTTGGTGG
64 AAAATTCA-AATTATTATTTTACTTGGTGG
* * *
36987816 TTCCATAAAGAATGGCTCAACCATTGTAATTTGCCACTCTTTTTTTTAA-ATTTT-TTTTAATTT
1 TGCCATAAAGAATGGCTCAACCAGTGTAATTTGCCACAC--TTTTTTAATATTTTGTTTTAATTT
* * *
36987879 AAAATTCAAATTGTTCTTTTATTTGGTGG
64 AAAATTCAAATTATTATTTTACTTGGTGG
*
36987908 TGCCATAGAGAATGGC
1 TGCCATAAAGAATGGC
36987924 ATCACCCCCT
Statistics
Matches: 90, Mismatches: 13, Indels: 10
0.80 0.12 0.09
Matches are distributed among these distances:
91 2 0.02
92 48 0.53
93 32 0.36
95 8 0.09
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.43
Consensus pattern (92 bp):
TGCCATAAAGAATGGCTCAACCAGTGTAATTTGCCACACTTTTTTAATATTTTGTTTTAATTTAA
AATTCAAATTATTATTTTACTTGGTGG
Found at i:36993540 original size:22 final size:21
Alignment explanation
Indices: 36993498--36993540 Score: 50
Period size: 22 Copynumber: 2.0 Consensus size: 21
36993488 AAGGACTTAA
*
36993498 AATATGTTTAAGGATATAAAT
1 AATATGTTTAAGGATAAAAAT
* *
36993519 AATATGGTTTTAGGTTAAAAAT
1 AATAT-GTTTAAGGATAAAAAT
36993541 GAGAGGTTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (21 bp):
AATATGTTTAAGGATAAAAAT
Found at i:36997799 original size:20 final size:20
Alignment explanation
Indices: 36997766--36997827 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
36997756 AACAATTTAA
36997766 AATCAAGTGC-AAATGATTTT
1 AATCAAGT-CAAAATGATTTT
*
36997786 AA-CTAAGTCAAAATGATTTC
1 AATC-AAGTCAAAATGATTTT
* *
36997806 AATCAAGTTAAAATCATTTT
1 AATCAAGTCAAAATGATTTT
36997826 AA
1 AA
36997828 ATGATTTGCA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 2 0.06
20 32 0.91
21 1 0.03
ACGTcount: A:0.45, C:0.11, G:0.10, T:0.34
Consensus pattern (20 bp):
AATCAAGTCAAAATGATTTT
Found at i:37017703 original size:42 final size:42
Alignment explanation
Indices: 37017593--37017713 Score: 102
Period size: 42 Copynumber: 2.9 Consensus size: 42
37017583 AGCTTCTGTT
* * ** *
37017593 AACTCATATGAGTTTCTGTTCAACCCTAATGGGTTTTCATTC
1 AACTCTTATGAGCTTCCATTCAACCCTAATGGGTTTCCATTC
* ** * *
37017635 AGCTCATT-TGAGCTT-CAGTTTGACCCTCATGGGTTTCCGTTC
1 AACTC-TTATGAGCTTCCA-TTCAACCCTAATGGGTTTCCATTC
* *
37017677 AACTCTTATGAGCTTCCATTCAACCCTTACGGGTTTC
1 AACTCTTATGAGCTTCCATTCAACCCTAATGGGTTTC
37017714 TGTTTAGCAC
Statistics
Matches: 60, Mismatches: 15, Indels: 8
0.72 0.18 0.10
Matches are distributed among these distances:
41 2 0.03
42 55 0.92
43 3 0.05
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.38
Consensus pattern (42 bp):
AACTCTTATGAGCTTCCATTCAACCCTAATGGGTTTCCATTC
Found at i:37022653 original size:15 final size:15
Alignment explanation
Indices: 37022633--37022661 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37022623 ATTGTTGACA
37022633 GACTAACTAAATCGG
1 GACTAACTAAATCGG
37022648 GACTAACTAAATCG
1 GACTAACTAAATCG
37022662 ACACATTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (15 bp):
GACTAACTAAATCGG
Found at i:37029565 original size:17 final size:17
Alignment explanation
Indices: 37029539--37029571 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37029529 AGTTGATTCA
37029539 TGACAAAGTGATGTCAT
1 TGACAAAGTGATGTCAT
*
37029556 TGACATAGTGATGTCA
1 TGACAAAGTGATGTCA
37029572 AAATCGATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.30
Consensus pattern (17 bp):
TGACAAAGTGATGTCAT
Found at i:37031636 original size:27 final size:27
Alignment explanation
Indices: 37031606--37031783 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37031596 ATATTGAGTC
* * * *
37031606 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37031633 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37031660 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37031688 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37031715 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37031742 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37031769 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37031784 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37031745 original size:82 final size:81
Alignment explanation
Indices: 37031627--37031782 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37031617 TGCTATATAA
* *
37031627 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37031692 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37031709 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37031773 CACTTAGTGC
65 CACTTAGTGC
37031783 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37039826 original size:27 final size:27
Alignment explanation
Indices: 37039796--37039973 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
37039786 ATATTGAGTC
* * * *
37039796 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
37039823 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37039850 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
37039878 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
37039905 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
37039932 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
37039959 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
37039974 GTACAATAAA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:37039935 original size:82 final size:81
Alignment explanation
Indices: 37039817--37039972 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
37039807 TGCTATATAA
* *
37039817 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
37039882 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
37039899 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
37039963 CACTTAGTGC
65 CACTTAGTGC
37039973 TGTACAATAA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:37043212 original size:18 final size:18
Alignment explanation
Indices: 37043191--37043225 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37043181 AATTTCAAAC
*
37043191 AAATAAATTATGTTTAAA
1 AAATAAACTATGTTTAAA
*
37043209 AAATAAACTATTTTTAA
1 AAATAAACTATGTTTAA
37043226 TTGAGAATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (18 bp):
AAATAAACTATGTTTAAA
Found at i:37043600 original size:22 final size:22
Alignment explanation
Indices: 37043575--37043621 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
37043565 AAAAAATTTC
37043575 ATTGTTTTGCTGTTATTTTAAT
1 ATTGTTTTGCTGTTATTTTAAT
* *
37043597 ATTGTTTTGTTGTTATTTTATT
1 ATTGTTTTGCTGTTATTTTAAT
37043619 ATT
1 ATT
37043622 ATATTATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.17, C:0.02, G:0.13, T:0.68
Consensus pattern (22 bp):
ATTGTTTTGCTGTTATTTTAAT
Found at i:37043623 original size:11 final size:11
Alignment explanation
Indices: 37043587--37043698 Score: 62
Period size: 11 Copynumber: 9.8 Consensus size: 11
37043577 TGTTTTGCTG
*
37043587 TTATTTTAATA
1 TTATTTTATTA
* * *
37043598 TTGTTTTGTTG
1 TTATTTTATTA
37043609 TTATTTTATTA
1 TTATTTTATTA
*
37043620 TTATATTATTA
1 TTATTTTATTA
* * *
37043631 TTGTTTTGTTT
1 TTATTTTATTA
*
37043642 TTATTGTTTAGATA
1 TTA-T-TTTA-TTA
* * *
37043656 TTATATAATTT
1 TTATTTTATTA
37043667 TTATTTTATTA
1 TTATTTTATTA
*
37043678 TTAATTTTACTA
1 TT-ATTTTATTA
*
37043690 CTATTTTAT
1 TTATTTTAT
37043699 AGGTATTTGT
Statistics
Matches: 71, Mismatches: 26, Indels: 8
0.68 0.25 0.08
Matches are distributed among these distances:
11 51 0.72
12 12 0.17
13 4 0.06
14 4 0.06
ACGTcount: A:0.25, C:0.02, G:0.06, T:0.67
Consensus pattern (11 bp):
TTATTTTATTA
Found at i:37057369 original size:20 final size:19
Alignment explanation
Indices: 37057332--37057392 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
37057322 TAAAAAAGGG
* *
37057332 TATGTACATATAAATAAAAA
1 TATGTATATAT-ATTAAAAA
* *
37057352 TATGTATATATATTTAAAT
1 TATGTATATATATTAAAAA
* *
37057371 TATGTATAAATATAAAAAA
1 TATGTATATATATTAAAAA
37057390 TAT
1 TAT
37057393 ATAAGTATGC
Statistics
Matches: 33, Mismatches: 8, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
19 23 0.70
20 10 0.30
ACGTcount: A:0.54, C:0.02, G:0.05, T:0.39
Consensus pattern (19 bp):
TATGTATATATATTAAAAA
Found at i:37057905 original size:21 final size:20
Alignment explanation
Indices: 37057874--37057935 Score: 65
Period size: 21 Copynumber: 3.1 Consensus size: 20
37057864 TAAAAAAGGT
*
37057874 AATAGTAATAACAGTATTAA
1 AATAATAATAACAGTATTAA
*
37057894 ACATAATAATAATAGTA--AA
1 A-ATAATAATAACAGTATTAA
* *
37057913 AATAATGATAACATTATTAA
1 AATAATAATAACAGTATTAA
37057933 AAT
1 AAT
37057936 TAATTAATAG
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
18 12 0.35
19 3 0.09
20 6 0.18
21 13 0.38
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.31
Consensus pattern (20 bp):
AATAATAATAACAGTATTAA
Found at i:37059812 original size:88 final size:87
Alignment explanation
Indices: 37059654--37059827 Score: 276
Period size: 88 Copynumber: 2.0 Consensus size: 87
37059644 TTATTTTTTA
* * *
37059654 TTTTATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTACAATCTTCGCCCTACTCCACTACTA
1 TTTTATCTACTTCACTGCCAGTACAGGAAAACAAGATCTACAATCTTCGACCTACTCCACTACTA
37059719 CTCAGGGAGATAAGGCAAGTGT
66 CTCAGGGAGATAAGGCAAGTGT
* *
37059741 TTTTAATCTACTTCACTGCTAGTACAGGAAAACAAGATCTACAATCTTCGACCTACTCCACTGCT
1 TTTT-ATCTACTTCACTGCCAGTACAGGAAAACAAGATCTACAATCTTCGACCTACTCCACTACT
* *
37059806 ACTCAGGGAGGTAAGGCTAGTG
65 ACTCAGGGAGATAAGGCAAGTG
37059828 GCTTAAATCT
Statistics
Matches: 79, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
87 4 0.05
88 75 0.95
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (87 bp):
TTTTATCTACTTCACTGCCAGTACAGGAAAACAAGATCTACAATCTTCGACCTACTCCACTACTA
CTCAGGGAGATAAGGCAAGTGT
Found at i:37060167 original size:87 final size:87
Alignment explanation
Indices: 37060010--37060432 Score: 256
Period size: 87 Copynumber: 4.9 Consensus size: 87
37060000 ACCGTCTTCG
* * * *
37060010 ATCTG-TTCC-ACTACTGCTTAGAGAGATAAGATAT-GCAATCTTCAACCTACTCCACTGA-TGC
1 ATCTGCTTCCTACTA-T-CTTAGGGAGATAAGAT-TCGCCATCTTCAATCTGCTCCACT-ACTGC
* * *
37060071 TCAAGGAGATAAGGCTGGTGGCTTAA
62 TTAGGGAGATAAGGCTGCTGGCTTAA
* *
37060097 ATCTGCTTCCTACTATCTTAGGGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAG
1 ATCTGCTTCCTACTATCTTAGGGAGATAAGATTCGCCATCTTCAATCTGCTCCACTACTGCTTAG
* * *** *
37060162 AGAGATAAGATCTGCAATCTTCA
66 GGAGATAAG-GCTGCTGGCTTAA
* * ** **** * *
37060185 ATCTAC-TCC-ACTACTGCTCAGGGAGATAAGGCT-GGTGGCTTAAATCTGTTTCCTACTAC--C
1 ATCTGCTTCCTACTA-T-CTTAGGGAGATAAGATTCGCCATCTTCAATCTG-CTCC-ACTACTGC
* ** * * **
37060245 TTAGGAAGATAAGATTCGCCGTCTTCG
62 TTAGGGAGATAAGGCT-GCTGGCTTAA
* * * * * * *
37060272 ATCTGCTCCACTACT-TCTTAGGGAGATAAGA-TCTGCAATCTTCAACCTACTCCACTGCTACTC
1 ATCTGCTTC-CTACTATCTTAGGGAGATAAGATTC-GCCATCTTCAATCTGCTCCACTACTGCTT
*
37060335 AGGGAGATAAGGCTGGTGGCTTAA
64 AGGGAGATAAGGCTGCTGGCTTAA
* * * * *
37060359 ATTTGCTTCCTACTACCTTAGGAAGATAAGATTCGCCATCTTCGATCTGCTCTACTACTGCTTAG
1 ATCTGCTTCCTACTATCTTAGGGAGATAAGATTCGCCATCTTCAATCTGCTCCACTACTGCTTAG
37060424 GGAGATAAG
66 GGAGATAAG
37060433 ATCTACAATC
Statistics
Matches: 251, Mismatches: 66, Indels: 38
0.71 0.19 0.11
Matches are distributed among these distances:
86 17 0.07
87 162 0.65
88 59 0.24
89 10 0.04
90 3 0.01
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (87 bp):
ATCTGCTTCCTACTATCTTAGGGAGATAAGATTCGCCATCTTCAATCTGCTCCACTACTGCTTAG
GGAGATAAGGCTGCTGGCTTAA
Found at i:37060444 original size:44 final size:43
Alignment explanation
Indices: 37060004--37060476 Score: 255
Period size: 44 Copynumber: 10.8 Consensus size: 43
37059994 AGATTCACCG
* * * *
37060004 TCTTCGATCTGTTCCACTACTGCTTAGAGAGATAAGATATGCAA
1 TCTTCAATCTGCTCCACTACT-CTTAGGGAGATAAGATCTGCAA
* * * * * ***
37060048 TCTTCAACCTACTCCACTGA-TGCTCAAGGAGATAAG-GCTGGTG
1 TCTTCAATCTGCTCCACT-ACT-CTTAGGGAGATAAGATCTGCAA
* * **
37060091 GCTTAAATCTGCTTCCTACTA-TCTTAGGGAGATAAGAT-TCGCCG
1 TCTTCAATCTGC-TCC-ACTACTCTTAGGGAGATAAGATCT-GCAA
* *
37060135 TCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGCAA
1 TCTTCAATCTGCTCCACTACT-CTTAGGGAGATAAGATCTGCAA
* * * ***
37060179 TCTTCAATCTACTCCACTACTGCTCAGGGAGATAAG-GCTGGTG
1 TCTTCAATCTGCTCCACTACT-CTTAGGGAGATAAGATCTGCAA
* * * * **
37060222 GCTTAAATCTGTTTCCTACTAC-CTTAGGAAGATAAGAT-TCGCCG
1 TCTTCAATCTG-CTCC-ACTACTCTTAGGGAGATAAGATCT-GCAA
*
37060266 TCTTCGATCTGCTCCACTACTTCTTAGGGAGATAAGATCTGCAA
1 TCTTCAATCTGCTCCACTAC-TCTTAGGGAGATAAGATCTGCAA
* * * * * ***
37060310 TCTTCAACCTACTCCACTGCTACTCAGGGAGATAAG-GCTGGTG
1 TCTTCAATCTGCTCCACTACT-CTTAGGGAGATAAGATCTGCAA
* * * * *
37060353 GCTTAAATTTGCTTCCTACTAC-CTTAGGAAGATAAGAT-TCGCCA
1 TCTTCAATCTGC-TCC-ACTACTCTTAGGGAGATAAGATCT-GCAA
* * *
37060397 TCTTCGATCTGCTCTACTACTGCTTAGGGAGATAAGATCTACAA
1 TCTTCAATCTGCTCCACTACT-CTTAGGGAGATAAGATCTGCAA
* * **
37060441 TCTTCAACCTACTCCACTGTTACTTAGGGAGATAAG
1 TCTTCAATCTGCTCCACTACT-CTTAGGGAGATAAG
37060477 GCTTGATATG
Statistics
Matches: 319, Mismatches: 87, Indels: 46
0.71 0.19 0.10
Matches are distributed among these distances:
42 14 0.04
43 80 0.25
44 209 0.66
45 16 0.05
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (43 bp):
TCTTCAATCTGCTCCACTACTCTTAGGGAGATAAGATCTGCAA
Found at i:37060470 original size:131 final size:131
Alignment explanation
Indices: 37059774--37060479 Score: 1013
Period size: 131 Copynumber: 5.4 Consensus size: 131
37059764 ACAGGAAAAC
* * * * *
37059774 AAGATCTACAATCTTCGACCTACTCCACTGCTACTCAGGGAGGTAAGGCTAGTGGCTTAAATCTT
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTGGTGGCTTAAATCTG
* * * *
37059839 CTTCCCTTCTACCTTGGGAAGATAAGATCCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
66 CTT-CCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAG
*
37059904 AC
130 AT
* * * * * *
37059906 AGGATTTGTAATCTTCAACCTACTCCACTGTTGCTCAAGGG-G-TTAGGACAT-GTGGCTTAAAT
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTACTC-AGGGAGATAAGG-C-TGGTGGCTTAAAT
* * * *
37059968 CTGCTTCCTACTACCTTAAGAAGATAAGATTCACCGTCTTCGATCTGTTCCACTACTGCTTAGAG
63 CTGCTTCCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
37060033 AGAT
128 AGAT
* * * *
37060037 AAGATATGCAATCTTCAACCTACTCCACTGATGCTCAAGGAGATAAGGCTGGTGGCTTAAATCTG
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTGGTGGCTTAAATCTG
* * *
37060102 CTTCCTACTATCTTAGGGAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGA
66 CTTCCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
37060167 T
131 T
* * *
37060168 AAGATCTGCAATCTTCAATCTACTCCACTACTGCTCAGGGAGATAAGGCTGGTGGCTTAAATCTG
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTGGTGGCTTAAATCTG
* *
37060233 TTTCCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTTCTTAGGGAGA
66 CTTCCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
37060298 T
131 T
*
37060299 AAGATCTGCAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTGGTGGCTTAAATTTG
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTGGTGGCTTAAATCTG
* *
37060364 CTTCCTACTACCTTAGGAAGATAAGATTCGCCATCTTCGATCTGCTCTACTACTGCTTAGGGAGA
66 CTTCCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
37060429 T
131 T
* * *
37060430 AAGATCTACAATCTTCAACCTACTCCACTGTTACTTAGGGAGATAAGGCT
1 AAGATCTGCAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCT
37060480 TGATATGATG
Statistics
Matches: 518, Mismatches: 50, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
130 4 0.01
131 458 0.88
132 51 0.10
133 5 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (131 bp):
AAGATCTGCAATCTTCAACCTACTCCACTGCTACTCAGGGAGATAAGGCTGGTGGCTTAAATCTG
CTTCCTACTACCTTAGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGA
T
Found at i:37061837 original size:6 final size:6
Alignment explanation
Indices: 37061826--37061881 Score: 51
Period size: 6 Copynumber: 9.0 Consensus size: 6
37061816 TTGGCCTCTC
* * *
37061826 CTTTTT CTTTTT CTTTTAT TTTTCTT TTTTTT CTTTTT CCTTTT CTTCTTT
1 CTTTTT CTTTTT CTTTT-T CTTT-TT CTTTTT CTTTTT CTTTTT CTT-TTT
37061877 -TTTTT
1 CTTTTT
37061882 GTTTGTTTGT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
5 3 0.07
6 27 0.63
7 12 0.28
8 1 0.02
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (6 bp):
CTTTTT
Found at i:37061863 original size:21 final size:21
Alignment explanation
Indices: 37061833--37061901 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
37061823 CTCCTTTTTC
37061833 TTTTTC-TTTTATTTTTCTTT
1 TTTTTCTTTTTATTTTTCTTT
**
37061853 TTTTTCTTTTTCCTTTTCTTCT
1 TTTTTCTTTTTATTTTTCTT-T
* *
37061875 TTTTT-TTGTTTGTTTGTTTTTT
1 TTTTTCTT-TTTATTT-TTCTTT
37061897 TTTTT
1 TTTTT
37061902 TGAACATTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 6 0.15
21 13 0.32
22 17 0.43
23 4 0.10
ACGTcount: A:0.01, C:0.10, G:0.04, T:0.84
Consensus pattern (21 bp):
TTTTTCTTTTTATTTTTCTTT
Found at i:37061879 original size:26 final size:26
Alignment explanation
Indices: 37061827--37061881 Score: 78
Period size: 24 Copynumber: 2.2 Consensus size: 26
37061817 TGGCCTCTCC
*
37061827 TTTTTCTTTTTCTTTTATTTTTCTTT
1 TTTTTCTTTTTCTTTTATTCTTCTTT
*
37061853 TTTTTCTTTTTC-CTT-TTCTTCTTT
1 TTTTTCTTTTTCTTTTATTCTTCTTT
37061877 TTTTT
1 TTTTT
37061882 GTTTGTTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 13 0.48
25 2 0.07
26 12 0.44
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.84
Consensus pattern (26 bp):
TTTTTCTTTTTCTTTTATTCTTCTTT
Found at i:37061895 original size:32 final size:32
Alignment explanation
Indices: 37061826--37061895 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
37061816 TTGGCCTCTC
* *
37061826 CTTTTTCTTTTTCTTTTATTTTTCTTTTTTTT
1 CTTTTTCCTTTTCTTTTATTTTTCTTTTGTTT
37061858 CTTTTTCCTTTTCTTCTT-TTTTT-TGTTTGTTT
1 CTTTTTCCTTTTCTT-TTATTTTTCT-TTTGTTT
*
37061890 GTTTTT
1 CTTTTT
37061896 TTTTTTTGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 1 0.03
32 30 0.91
33 2 0.06
ACGTcount: A:0.01, C:0.13, G:0.04, T:0.81
Consensus pattern (32 bp):
CTTTTTCCTTTTCTTTTATTTTTCTTTTGTTT
Found at i:37066915 original size:29 final size:30
Alignment explanation
Indices: 37066883--37066994 Score: 83
Period size: 29 Copynumber: 3.9 Consensus size: 30
37066873 ATCATGCATT
*
37066883 AATAAATGAATAATAATA-T-TAAATAGATA
1 AATAAAT-AATAATAATAGTAAAAATAGATA
*
37066912 AAT-AATAATAATAATAGTAAAAATATATA
1 AATAAATAATAATAATAGTAAAAATAGATA
** * * *
37066941 AATAAA-AA-GGTAATAGTAATAACAGTATT
1 AATAAATAATAATAATAGTAAAAATAG-ATA
* *
37066970 AA-ACATAATAATAATAGTACAAATA
1 AATAAATAATAATAATAGTAAAAATA
37066995 ATGATAACAT
Statistics
Matches: 63, Mismatches: 14, Indels: 11
0.72 0.16 0.12
Matches are distributed among these distances:
27 10 0.16
28 18 0.29
29 22 0.35
30 13 0.21
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.29
Consensus pattern (30 bp):
AATAAATAATAATAATAGTAAAAATAGATA
Found at i:37066945 original size:20 final size:20
Alignment explanation
Indices: 37066891--37066941 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 20
37066881 TTAATAAATG
*
37066891 AATAATAATATTAAATAGATA
1 AATAATAATAAT-AATAGATA
37066912 AATAATAATAATAATAG-TA
1 AATAATAATAATAATAGATA
37066931 AA-AATATATAA
1 AATAATA-ATAA
37066942 ATAAAAAGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
18 4 0.14
19 8 0.29
20 5 0.18
21 11 0.39
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (20 bp):
AATAATAATAATAATAGATA
Found at i:37079880 original size:25 final size:25
Alignment explanation
Indices: 37079818--37079883 Score: 98
Period size: 25 Copynumber: 2.6 Consensus size: 25
37079808 ATACCTTTTC
* *
37079818 AACTTCTTCAATTTATATTCTTCTG
1 AACTTCTTCAATTTCTATTCTTCTA
37079843 AACTTCTTCAATTTCTATTCTTCTA
1 AACTTCTTCAATTTCTATTCTTCTA
37079868 AACTTC-TCTAATTTCT
1 AACTTCTTC-AATTTCT
37079884 CTTGCTGTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 2 0.05
25 36 0.95
ACGTcount: A:0.24, C:0.23, G:0.02, T:0.52
Consensus pattern (25 bp):
AACTTCTTCAATTTCTATTCTTCTA
Found at i:37080180 original size:126 final size:126
Alignment explanation
Indices: 37079951--37080254 Score: 407
Period size: 126 Copynumber: 2.4 Consensus size: 126
37079941 AAGCAGGATG
37079951 TACTGTAGAAAAAGAGCGTCCAA-GTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
1 TACTGTAGAAAAAGAGCGT-CAAGGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTG
* * *
37080015 TTTGAAGCTTTTTCTACCCTATTTTTTTAGAGCAATCTTCTCAAAATTATTTTTAAAGAAAC
65 CTTGAAGCTTTTTCGACCCTATTTTTTCAGAGCAATCTTCTCAAAATTATTTTTAAAGAAAC
* * *
37080077 TACTGTGGAAAGAGAGCATCAAGGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
1 TACTGTAGAAAAAGAGCGTCAAGGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
* * **
37080142 TTGAAGCGTTTTT-GACCCTATTTTTTCAGAATC-TTCTTCTCAAAATTATTTTTTCAGAAAC
66 TTGAAGC-TTTTTCGACCCTATTTTTTCAG-AGCAATCTTCTCAAAATTATTTTTAAAGAAAC
* * * * * * *
37080203 TACTCTAGAAAAAGAGCGTCTAGCTGGAAGTTTTTTTCAATACTTTGGCTGA
1 TACTGTAGAAAAAGAGCGTCAAGGTGGGAGCTTTTTTCAGTACTTTTGCTGA
37080255 ATGAATAAAA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
125 3 0.02
126 145 0.94
127 7 0.05
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (126 bp):
TACTGTAGAAAAAGAGCGTCAAGGTGGGAGCTTTTTTCAGTACTTTTGCTGACAGTGCATCCTGC
TTGAAGCTTTTTCGACCCTATTTTTTCAGAGCAATCTTCTCAAAATTATTTTTAAAGAAAC
Found at i:37080987 original size:29 final size:30
Alignment explanation
Indices: 37080934--37080992 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
37080924 GAATTGGATC
* *
37080934 AAATCAAATTTTCATGTATGAAATTGCACA
1 AAATCAAATATTCATGTATGAAATTACACA
37080964 AAATCAAA-ATTCATGTAT-ACAATTACACA
1 AAATCAAATATTCATGTATGA-AATTACACA
37080993 TTAAACCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 1 0.04
29 17 0.65
30 8 0.31
ACGTcount: A:0.47, C:0.15, G:0.07, T:0.31
Consensus pattern (30 bp):
AAATCAAATATTCATGTATGAAATTACACA
Found at i:37090078 original size:50 final size:50
Alignment explanation
Indices: 37089994--37090214 Score: 318
Period size: 50 Copynumber: 4.4 Consensus size: 50
37089984 ATTTGGGTAA
* * *
37089994 AGAGATCCCATGTAAGACCATGTTTGGGACATGGCGTTGGTACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
37090044 AGAGGTCCTATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
37090094 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * * * *
37090144 AGAGGTCTCC-CGTAAGACCATGTCTTGGACATGGCATGGGCACCGATATG
1 AGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
**
37090194 AGAACTCCCATGTAAGACCAT
1 AGAGGTCCCATGTAAGACCAT
37090215 ATCTAGGATA
Statistics
Matches: 154, Mismatches: 15, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
49 2 0.01
50 150 0.97
51 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:37090536 original size:20 final size:20
Alignment explanation
Indices: 37090498--37090536 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37090488 TAAGCAAGCA
*
37090498 AGTAAGTAAACAAGTAAGTG
1 AGTAAGTAAACAAGAAAGTG
*
37090518 AGTAAGTAAAGAAGAAAGT
1 AGTAAGTAAACAAGAAAGT
37090537 AAAGATCCTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.54, C:0.03, G:0.26, T:0.18
Consensus pattern (20 bp):
AGTAAGTAAACAAGAAAGTG
Found at i:37092807 original size:9 final size:9
Alignment explanation
Indices: 37092795--37092822 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
37092785 GGCTCCGATG
37092795 GAATTGAAA
1 GAATTGAAA
37092804 GAATTGAAA
1 GAATTGAAA
37092813 GAATTGAAA
1 GAATTGAAA
37092822 G
1 G
37092823 CTCAGTTACA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.54, C:0.00, G:0.25, T:0.21
Consensus pattern (9 bp):
GAATTGAAA
Found at i:37096250 original size:133 final size:133
Alignment explanation
Indices: 37096012--37096266 Score: 510
Period size: 133 Copynumber: 1.9 Consensus size: 133
37096002 GGAAGCCATG
37096012 GTTAGGTTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCAAGCCTCGTTTTTAATGTTCTTT
1 GTTAGGTTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCAAGCCTCGTTTTTAATGTTCTTT
37096077 ACGTTTTTGTAGTTCCGGTAACTTAATTTAGCTTATTCTAGCAATAATTTAACCTAGGGCTCATA
66 ACGTTTTTGTAGTTCCGGTAACTTAATTTAGCTTATTCTAGCAATAATTTAACCTAGGGCTCATA
37096142 TTT
131 TTT
37096145 GTTAGGTTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCAAGCCTCGTTTTTAATGTTCTTT
1 GTTAGGTTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCAAGCCTCGTTTTTAATGTTCTTT
37096210 ACGTTTTTGTAGTTCCGGTAACTTAATTTAGCTTATTCTAGCAATAATTTAACCTAG
66 ACGTTTTTGTAGTTCCGGTAACTTAATTTAGCTTATTCTAGCAATAATTTAACCTAG
37096267 AGTTTATATT
Statistics
Matches: 122, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
133 122 1.00
ACGTcount: A:0.24, C:0.18, G:0.16, T:0.42
Consensus pattern (133 bp):
GTTAGGTTTTTCAAGCTTCCAAGCTCCATAGTAAGTGATTCCAAGCCTCGTTTTTAATGTTCTTT
ACGTTTTTGTAGTTCCGGTAACTTAATTTAGCTTATTCTAGCAATAATTTAACCTAGGGCTCATA
TTT
Found at i:37097024 original size:49 final size:50
Alignment explanation
Indices: 37096919--37097109 Score: 249
Period size: 50 Copynumber: 3.8 Consensus size: 50
37096909 ATTTGGGTAA
* *
37096919 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
37096969 AGAGGTCCCATGTAAGATCATGTCTGGGACAT-GCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * *
37097018 AGAGGTCCCCCGTAAGACCATGTCTTGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * *
37097068 AGAACTCCCATGTAAGACCATATCTGGGATATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
37097110 ATACTGGAAA
Statistics
Matches: 121, Mismatches: 19, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
49 44 0.36
50 77 0.64
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:37097132 original size:99 final size:97
Alignment explanation
Indices: 37096923--37097148 Score: 238
Period size: 99 Copynumber: 2.3 Consensus size: 97
37096913 GGGTAAAGAG
* * * ** *
37096923 ATCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATGAGAGGTCCCATGTAAGATC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACC
* * *
37096988 ATGTCTGGGACATGCGTTGGCACCGAGATGAGAG
66 ATATCTGGGACATGCGTTGGCA-C-AGATGAAAC
* ** * *
37097022 GTCCCCCGTAAGACCATGTCTTGGACATGGCATGGGCACCGATATGAGAACTCCCATGTAAGACC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACC
* * *
37097087 ATATCTGGGATATGGCTTTGGCA-ATACTGGAAAC
66 ATATCTGGGACAT-GCGTTGGCACAGA-T-GAAAC
*
37097121 ATCCCATGTAAGACTATGTCTGGGACAT
1 ATCCCATGTAAGACCATGTCTGGGACAT
37097149 AGCTTTGGCA
Statistics
Matches: 102, Mismatches: 22, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
97 2 0.02
98 1 0.01
99 91 0.89
100 8 0.08
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (97 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAACTCCCATGTAAGACC
ATATCTGGGACATGCGTTGGCACAGATGAAAC
Found at i:37099059 original size:25 final size:25
Alignment explanation
Indices: 37099026--37099073 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
37099016 AATTTAGTTA
* * * *
37099026 TTTTTATTTTATTTTTATATTTTTG
1 TTTTAATTTAATTGTTACATTTTTG
37099051 TTTTAATTTAATTGTTACATTTT
1 TTTTAATTTAATTGTTACATTTT
37099074 AATTTTTCTT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.04, T:0.73
Consensus pattern (25 bp):
TTTTAATTTAATTGTTACATTTTTG
Found at i:37111940 original size:44 final size:44
Alignment explanation
Indices: 37111891--37111992 Score: 141
Period size: 44 Copynumber: 2.3 Consensus size: 44
37111881 TCTTCTAATA
* * *
37111891 TTCTATATCTATCTGACTTTCGCTAAAGGAATAAAACTTACGTC
1 TTCTATATCTATCTGACTATCGCAAAAGGAATAAAACTTACCTC
* *
37111935 TTCTATATTTATCTGACTATCGCAAAAGGATTAAAACTTACCTC
1 TTCTATATCTATCTGACTATCGCAAAAGGAATAAAACTTACCTC
37111979 TTCTAATATTCTAT
1 TTCT-ATA-TCTAT
37111993 ATTTATCTCC
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
44 43 0.86
45 3 0.06
46 4 0.08
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (44 bp):
TTCTATATCTATCTGACTATCGCAAAAGGAATAAAACTTACCTC
Found at i:37115119 original size:23 final size:22
Alignment explanation
Indices: 37115076--37115133 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
37115066 AAAGGGTATC
* *
37115076 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
37115097 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
37115120 TGCATATCATATCT
1 TACAAATCATATCT
37115134 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:37115788 original size:131 final size:133
Alignment explanation
Indices: 37115557--37115836 Score: 417
Period size: 131 Copynumber: 2.1 Consensus size: 133
37115547 AATTGGTAAT
* *
37115557 TTCAACCTGCTCCACTACAACTTCAGGGAGATAAGGCTGGTGGCTTAAATCTGCTTCCCTACTAC
1 TTCAACCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTAC
* * *
37115622 CTTCGGAAGATAAGACTTGTCGTCTTTGATTTGCTCCACTACTGCTTAGGGAGATAGGATATACA
66 CTTCGGAAGATAAGACTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATATACA
37115687 ATC
131 ATC
* *
37115690 TTCAACCTACTCCATTACTAC-TCAGGGAGAT-AGGACTAGTGGCTTAAATCTGCTT-CCTACTA
1 TTCAACCTACTCCACTACAACTTCAGGGAGATAAGG-CTAGTGGCTTAAATCTGCTTCCCTACTA
* *
37115752 TC-TCGGGAAGATAAGA-TTCGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCT
65 CCTTC-GGAAGATAAGACTT-GCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATAT
37115815 ACAATC
128 ACAATC
37115821 TTCAACCTACTCCACT
1 TTCAACCTACTCCACT
37115837 GCAAACTCAA
Statistics
Matches: 134, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
130 4 0.03
131 83 0.62
132 29 0.22
133 18 0.13
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (133 bp):
TTCAACCTACTCCACTACAACTTCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTAC
CTTCGGAAGATAAGACTTGCCGTCTTTGATCTGCTCCACTACTGCTTAGGGAGACAGGATATACA
ATC
Found at i:37115943 original size:45 final size:44
Alignment explanation
Indices: 37115893--37116025 Score: 137
Period size: 45 Copynumber: 3.0 Consensus size: 44
37115883 CAGTACAATA
* *
37115893 AGACAAGATCTACTATTTTTAGTCTACTCCGCTGCTAACTCAGAG
1 AGACAAGATCTGCTATCTTTAGTCTACTCCGCTGCTAACTCAG-G
* * * *
37115938 AGACAAGA-CTGGTGTCTTT-GATCTACTTCGTTGCTAA-TACAGG
1 AGACAAGATCTGCTATCTTTAG-TCTACTCCGCTGCTAACT-CAGG
* *
37115981 AAGACAAGATCTGCTATCTTTAGTCTGCTCCGCTGCAAACTCAGG
1 -AGACAAGATCTGCTATCTTTAGTCTACTCCGCTGCTAACTCAGG
37116026 GAGGCAAGGT
Statistics
Matches: 70, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
43 3 0.04
44 32 0.46
45 33 0.47
46 2 0.03
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
AGACAAGATCTGCTATCTTTAGTCTACTCCGCTGCTAACTCAGG
Found at i:37115985 original size:89 final size:89
Alignment explanation
Indices: 37115830--37116384 Score: 644
Period size: 89 Copynumber: 6.2 Consensus size: 89
37115820 CTTCAACCTA
* ** ** * * * * **
37115830 CTCCACTGCAAACTCAAAGAGGCAAGGCTGGTGGT-TTTTATCTGCTTCACTTCCAGTACAATAA
1 CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGT-GTCTTCGATCTACTTCGCTGCCAATACAGGAA
** * *
37115894 GACAAGATCTACTATTTTTAGTCTA
65 GACAAGATCTGTTATCTTTAGTCTG
* * * * * * *
37115919 CTCCGCTGCTAACTCAGAGAGACAAGACTGGTGTCTTTGATCTACTTCGTTGCTAATACAGGAAG
1 CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAG
*
37115984 ACAAGATCTGCTATCTTTAGTCTG
66 ACAAGATCTGTTATCTTTAGTCTG
* * * *
37116008 CTCCGCTGCAAACTCAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTTGCTGCCAATACAGAAAG
1 CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAG
* *
37116073 ACAAGATCTATTATCTTCAGTCTG
66 ACAAGATCTGTTATCTTTAGTCTG
* * * *
37116097 CTCTGCTGCAAACTCAGGGAGGTAAGGTTGGTGTCTTCGATCTGCTTCGCTGCCAATACAGGAAG
1 CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAG
37116162 ACAAGATCTGTTATCTTTAGTCTG
66 ACAAGATCTGTTATCTTTAGTCTG
** * * * *
37116186 CTCCATTGCAAACTCAGGGAGGCAAAGCTAGTGTCTTCAATCTACTTCGCTGCCAATACTGGAAG
1 CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAG
* *
37116251 ACAAGATCTGTTATCATCAGTCTG
66 ACAAGATCTGTTATCTTTAGTCTG
* * * **
37116275 CTCTGCTGCAAATTCAAGGAGATAAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAG
1 CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAG
* * *
37116340 ATAAGATCTGTTATCATCAGTCTG
66 ACAAGATCTGTTATCTTTAGTCTG
*
37116364 CTCCGCTGCAAATTCAGGGAG
1 CTCCGCTGCAAACTCAGGGAG
37116385 ATAAGGTTGG
Statistics
Matches: 402, Mismatches: 63, Indels: 2
0.86 0.13 0.00
Matches are distributed among these distances:
88 2 0.00
89 400 1.00
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (89 bp):
CTCCGCTGCAAACTCAGGGAGGCAAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAG
ACAAGATCTGTTATCTTTAGTCTG
Found at i:37116097 original size:45 final size:45
Alignment explanation
Indices: 37115973--37116365 Score: 207
Period size: 44 Copynumber: 8.8 Consensus size: 45
37115963 CTTCGTTGCT
* * ** *
37115973 AATACAGGAAGACAAGATCTGCTATCTTTAGTCTGCTCCGCTGCA
1 AATACAGGAAGACAAGATCTGTTATCTTCAGTCTGCTTTGCTGCC
* * * * *
37116018 AACT-CAGGGAGGCAAGGT-TGGTGTCTTC-GATCTGCTTTGCTGCC
1 AA-TACAGGAAGACAAGATCTGTTATCTTCAG-TCTGCTTTGCTGCC
* * * *
37116062 AATACAGAAAGACAAGATCTATTATCTTCAGTCTGCTCTGCTGCA
1 AATACAGGAAGACAAGATCTGTTATCTTCAGTCTGCTTTGCTGCC
* ** * * * *
37116107 AACT-CAGGGAGGTAAGGT-TGGTGTCTTC-GATCTGCTTCGCTGCC
1 AA-TACAGGAAGACAAGATCTGTTATCTTCAG-TCTGCTTTGCTGCC
* **** *
37116151 AATACAGGAAGACAAGATCTGTTATCTTTAGTCTGCTCCATTGCA
1 AATACAGGAAGACAAGATCTGTTATCTTCAGTCTGCTTTGCTGCC
* * * * * * *
37116196 AACT-CAGGGAGGCAA-AGCTAG-TGTCTTCAATCTACTTCGCTGCC
1 AA-TACAGGAAGACAAGATCT-GTTATCTTCAGTCTGCTTTGCTGCC
* * * *
37116240 AATACTGGAAGACAAGATCTGTTATCATCAGTCTGCTCTGCTGCA
1 AATACAGGAAGACAAGATCTGTTATCTTCAGTCTGCTTTGCTGCC
* * * * * * *
37116285 AATTCAAGG-AGATAAG-GCTGGTGTCTTC-GATCTACTTCGCTGCC
1 AATAC-AGGAAGACAAGATCTGTTATCTTCAG-TCTGCTTTGCTGCC
* *
37116329 AATACAGGAAGATAAGATCTGTTATCATCAGTCTGCT
1 AATACAGGAAGACAAGATCTGTTATCTTCAGTCTGCT
37116366 CCGCTGCAAA
Statistics
Matches: 249, Mismatches: 79, Indels: 40
0.68 0.21 0.11
Matches are distributed among these distances:
43 9 0.04
44 118 0.47
45 114 0.46
46 8 0.03
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (45 bp):
AATACAGGAAGACAAGATCTGTTATCTTCAGTCTGCTTTGCTGCC
Found at i:37116508 original size:51 final size:51
Alignment explanation
Indices: 37116450--37116553 Score: 154
Period size: 51 Copynumber: 2.0 Consensus size: 51
37116440 CATAAGTTGT
* * **
37116450 AGCTTTAATCTACTCTACTGCAATGCTAGGGAAATAAGATTCGCTGTCTTC
1 AGCTTTAATCTACTCCACTACAACACTAGGGAAATAAGATTCGCTGTCTTC
**
37116501 AGCTTTAATCTGTTCCACTACAACACTAGGGAAATAAGATTCGCTGTCTTC
1 AGCTTTAATCTACTCCACTACAACACTAGGGAAATAAGATTCGCTGTCTTC
37116552 AG
1 AG
37116554 TCTGCTCCGC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (51 bp):
AGCTTTAATCTACTCCACTACAACACTAGGGAAATAAGATTCGCTGTCTTC
Found at i:37116711 original size:143 final size:143
Alignment explanation
Indices: 37116501--37117039 Score: 408
Period size: 134 Copynumber: 3.9 Consensus size: 143
37116491 CGCTGTCTTC
* * *
37116501 AGCTTTAATCTGTTCCACTACAACACTAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTG
1 AGCTTTAATCTGCTCCACTACAACACTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTG
* * *
37116566 CAACTTCAAGGAGATAAGG-CTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGAT
66 CAACTTCAAGGAGAT-AGGACTAGTAGCTTCAATCTGCTCCACTGCAAATTCAGGAAGATAAGAT
37116630 ACGCCATAATTTGT
130 ACGCCATAATTTGT
* * * *
37116644 AGCTTTAATCTGCTCCATTGCAACGCTAGGGAAATAAGATTCGCTATCTTCAGTTTGCTCCACTG
1 AGCTTTAATCTGCTCCACTACAACACTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTG
* * * * *
37116709 CAACTTCAGGGAGATAGGATTATTAGCTTTAATCTGCTCCACTGCAAATTCAGGAAGATAAGATT
66 CAACTTCAAGGAGATAGGACTAGTAGCTTCAATCTGCTCCACTGCAAATTCAGGAAGATAAGATA
*
37116774 TGCC---A----T
131 CGCCATAATTTGT
* * ** * *
37116780 --CTTTAGTCTGC-CTCACTACAAC-TTCAGGGGGATAAGACTT-GCTTTCTTCAGTCTGTTCCA
1 AGCTTTAATCTGCTC-CACTACAACACT-AGGGAAATAAGA-TTCGCTATCTTCAGTCTGCTCCA
* * * * * * * *
37116840 CTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTTCACTGCAACTTCAGG--G---AG
63 CTGCAACTTCAAGGAGATAGGACTAGTAGCTTCAATCTGCTCCACTGCAAATTCAGGAAGATAAG
* *
37116900 ATA-G-GATTA-TTG-
128 ATACGCCATAATTTGT
* * * * * * * *
37116912 -GCTTTGATCTGCTTCACTGCAAC-TTCAAGGAGATAAGATTCGCCATCTTCAGTCTGCCCCACT
1 AGCTTTAATCTGCTCCACTACAACACT-AGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACT
* * * * ** * *
37116975 GCAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCTAGG-AGATAAG
65 GCAACTTCAAGGAGATAGGACTAG-TAGCTTCAATCTGCTCCACTGCAAATTC-AGGAAGATAAG
37117039 A
128 A
37117040 CTTGTAACTT
Statistics
Matches: 325, Mismatches: 52, Indels: 42
0.78 0.12 0.10
Matches are distributed among these distances:
128 1 0.00
129 4 0.01
130 1 0.00
132 3 0.01
133 73 0.22
134 115 0.35
135 5 0.02
136 2 0.01
139 3 0.01
140 1 0.00
142 3 0.01
143 114 0.35
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.30
Consensus pattern (143 bp):
AGCTTTAATCTGCTCCACTACAACACTAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTG
CAACTTCAAGGAGATAGGACTAGTAGCTTCAATCTGCTCCACTGCAAATTCAGGAAGATAAGATA
CGCCATAATTTGT
Found at i:37116720 original size:45 final size:44
Alignment explanation
Indices: 37116652--37117308 Score: 454
Period size: 45 Copynumber: 14.8 Consensus size: 44
37116642 GTAGCTTTAA
* * *
37116652 TCTGCTCCATTGCAAC-GCTAGGGAAATAAGATTCGCTATCTTCAG
1 TCTGCTCCACTGCAACTTC-AGGGAGATAAGATT-GCTATCTTCAG
* * ** * * *
37116697 TTTGCTCCACTGCAACTTCAGGGAGATAGGATTATTAGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCTATCTTCAG
* * * *
37116741 TCTGCTCCACTGCAAATTCAGGAAGATAAGATTTGCCATCTTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCTATCTTCAG
* * *
37116786 TCTGC-CTCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTCAG
1 TCTGCTC-CACTGCAACTTCAGGGAGATAAGA-TTGCTATCTTCAG
* * * *
37116831 TCTGTTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCTATCTTCAG
* * * ** ** *
37116875 TCCGCTTCACTGCAACTTCAGGGAGATAGGATTATTGGCTT-TG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCTATCTTCAG
* * *
37116918 ATCTGCTTCACTGCAACTTCAAGGAGATAAGATTCGCCATCTTCAG
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGATT-GCTATCTTCAG
* * *
37116964 TCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCTATCTTCAG
* * *
37117009 TCTGCTCCACTGCAACTTCTA-GGAGATAAGACTTG-TAACTTTAA
1 TCTGCTCCACTGCAACTTC-AGGGAGATAAGA-TTGCTATCTTCAG
* * ** ** ** * *
37117053 TCCGCTCTACTGCAACTTTTGGGGAGAT-AGAATTATTGGCTTTAA
1 TCTGCTCCACTGCAAC-TTCAGGGAGATAAG-ATTGCTATCTTCAG
* * *
37117098 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCTATCTTCAG
* * *
37117142 TCCGCTCCACAGCAACTTCAAGGAGATAAGATTTG-TCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCT-ATCTTCAG
* * * * *
37117187 TCTGCCCCACTACAACTTTAGGG-GAATAAGACTTGCTTTCTTCAA
1 TCTGCTCCACTGCAACTTCAGGGAG-ATAAGA-TTGCTATCTTCAG
* * * *
37117232 TCTGTTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTGCTATCTTCAG
* * * * *
37117276 TCCGCTCTACTGCAACCTCATGGAGATAGGATT
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGATT
37117309 TGTGCTTTCA
Statistics
Matches: 485, Mismatches: 107, Indels: 42
0.76 0.17 0.07
Matches are distributed among these distances:
43 4 0.01
44 204 0.42
45 269 0.55
46 8 0.02
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGATTGCTATCTTCAG
Found at i:37116886 original size:134 final size:132
Alignment explanation
Indices: 37116677--37117310 Score: 627
Period size: 134 Copynumber: 4.7 Consensus size: 132
37116667 CGCTAGGGAA
* * * * *
37116677 ATAAGATTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATAGGA-TTATTAGCTTTAA
1 ATAAGATT-GCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTTAA
* *
37116741 TCTGCTCCACTGCAAATTC-AGGAAGATAAGATTTGCCATCTTTAGTCTGCCTCACTACAACTTC
64 TCCGCTCCACTGCAACTTCAAGG-AGATAAGATTTG-CATCTTTAGTCTGCCTCACTACAACTTC
37116805 AGGGGG
127 AGGGGG
*
37116811 ATAAGACTTGCTTTCTTCAGTCTGTTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAAT
1 ATAAGA-TTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAAT
* * * * * *
37116876 CCGCTTCACTGCAACTTCAGGGAGATAGGATTATTG--GCTTT-GATCTGCTTCACTGCAACTTC
65 CCGCTCCACTGCAACTTCAAGGAGATAAGA-T-TTGCATCTTTAG-TCTGCCTCACTACAACTTC
* *
37116938 AAGGAG
127 AGGGGG
** * * ** * *
37116944 ATAAGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTCAG
1 ATAAGATT-GCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTG-TAACTTTAA
* * * * * * * * **
37117009 TCTGCTCCACTGCAACTTCTAGGAGATAAGACTTGTAACTTTAATCCG-CTCTACTGCAACTTTT
64 TCCGCTCCACTGCAACTTCAAGGAGATAAGATTTGCATCTTTAGTCTGCCTC-ACTACAACTTCA
37117073 GGGGAG
128 GGGG-G
* * * *
37117079 AT-AGAATT-ATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
1 ATAAG-ATTGCTT-TCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
* * * *
37117142 TCCGCTCCACAGCAACTTCAAGGAGATAAGATTTGTCATCTTCAGTCTGCCCCACTACAACTTTA
64 TCCGCTCCACTGCAACTTCAAGGAGATAAGATTTG-CATCTTTAGTCTGCCTCACTACAACTTCA
*
37117207 GGGGA
128 GGGGG
* *
37117212 ATAAGACTTGCTTTCTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAAT
1 ATAAGA-TTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAAT
* * * *
37117277 CCGCTCTACTGCAACCTCATGGAGATAGGATTTG
65 CCGCTCCACTGCAACTTCAAGGAGATAAGATTTG
37117311 TGCTTTCACT
Statistics
Matches: 407, Mismatches: 73, Indels: 40
0.78 0.14 0.08
Matches are distributed among these distances:
132 6 0.01
133 113 0.28
134 268 0.66
135 17 0.04
136 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (132 bp):
ATAAGATTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATC
CGCTCCACTGCAACTTCAAGGAGATAAGATTTGCATCTTTAGTCTGCCTCACTACAACTTCAGGG
GG
Found at i:37116924 original size:178 final size:177
Alignment explanation
Indices: 37116704--37117310 Score: 701
Period size: 178 Copynumber: 3.4 Consensus size: 177
37116694 CAGTTTGCTC
* *
37116704 CACTGCAACTTCAGGGAGATAGGATTATTAGCTTTAATCTGCTCCACTGCAAATTCAGGAAGATA
1 CACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGG-AGATA
37116769 AGATTTGCCATCTTTAGTCTGCCTCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTCT
65 AGATTTGCCATCTTTAGTCTGCCTCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTCT
*
37116834 GTTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTT
130 GCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTT
* *
37116882 CACTGCAACTTCAGGGAGATAGGATTATTGGCTTTGATCTGCTTCACTGCAACTTCAAGGAGATA
1 CACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTC-AGGAGATA
* * * *
37116947 AGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTCT
65 AGATTTGCCATCTTTAGTCTGCCTCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTCT
37117012 GCTCCACTGCAACTTCTA-GGAGATAAGACTTGTAACTTTAATCCGC-T
130 GCTCCACTGCAACTTC-AGGGAGATAAGACTTGTAACTTTAATCCGCTT
** *
37117059 CTACTGCAACTTTTGGGGAGATAGAATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGA
1 C-ACTGCAAC-TTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCA-GGAGA
* * * * * * * * *
37117124 TAAGACTTG-TAACTTTAATCCG-CTCCAC-AGCAACTTCAAGGAGATAAGATTTG-TCATCTTC
63 TAAGATTTGCCATCTTTAGTCTGCCT-CACTA-CAACTTCAGGGGGATAAGACTTGCT-TTCTTC
* * * ** * *
37117185 AGTCTGCCCCACTACAACTTTAGGG-GAATAAGACTTGCTTTCTTCAATCTG-TT
125 AGTCTGCTCCACTGCAACTTCAGGGAG-ATAAGACTTG-TAACTTTAATCCGCTT
* * ** * * *
37117238 CCACTGCAACTTCAGGGAGATAAGACTT-GTAACTTTAATCCGCTCTACTGCAACCTCATGGAGA
1 -CACTGCAACTTCAGGGAGATAGGA-TTATTGGCTTTAATCTGCTCCACTGCAACTTCA-GGAGA
*
37117302 TAGGATTTG
63 TAAGATTTG
37117311 TGCTTTCACT
Statistics
Matches: 368, Mismatches: 47, Indels: 28
0.83 0.11 0.06
Matches are distributed among these distances:
177 6 0.02
178 283 0.77
179 78 0.21
180 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (177 bp):
CACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGGAGATAA
GATTTGCCATCTTTAGTCTGCCTCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTCAGTCTG
CTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAATCCGCTT
Found at i:37117013 original size:223 final size:223
Alignment explanation
Indices: 37116534--37117304 Score: 646
Period size: 223 Copynumber: 3.4 Consensus size: 223
37116524 CACTAGGGAA
* * * * * **
37116534 ATAAGA-TTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGGCTGGTGGCTTCAA
1 ATAAGACTT-GCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAA
* * * * *
37116598 TCTGCTCCACTGCAAC-TTCAGGAAGATAAGATACGCCATAATTTGTAGCTTTAATCTGCTCCAT
65 TCCGCTCCACTGCAACTTTCAGG--G---AGATA-G----AATTAGTAACTTTAATCCGCTCCAC
* * * * * ** * *
37116662 TGCAAC-GCTAGGGAAATAAGA-TTCGCTATCTTCAGTTTGCTCCACTGCAACTTCAGGGAGATA
120 TGCAACTTC-AGGGAGATAAGACTT-G-TAACTTTAATCCGCTCCACAGCAACTTCAAGGAGATA
* *** * * * * * **
37116725 GGATT-ATTAGCTTTAATCTGCTCCACTGCAAATTCAGGAAG
182 AGATTCGCCATCTTCAGTCTGCCCCACTGCAACTTCAGGGGG
* ** * * * **
37116766 ATAAGATTTGCCATCTTTAGTCTGC-CTCACTACAACTTCAGGGGGATAAGACTTGCTTTCTTCA
1 ATAAGACTTGCTTTCTTCAGTCTGCTC-CACTGCAACTTCAGGGAGATAAGACTTG-TAACTTCA
* * * * *
37116830 GTCTGTTCCACTGCAAC-TTCAGGGAGATAAGACTT-GTAACTTTAATCCGCTTCACTGCAACTT
64 ATCCGCTCCACTGCAACTTTCAGGGAGAT-AGAATTAGTAACTTTAATCCGCTCCACTGCAACTT
* * ** * * * *
37116893 CAGGGAGATAGGA-TTATTGGCTTTGATCTGCTTCACTGCAACTTCAAGGAGATAAGATTCGCCA
128 CAGGGAGATAAGACTT-GTAACTTTAATCCGCTCCACAGCAACTTCAAGGAGATAAGATTCGCCA
37116957 TCTTCAGTCTGCCCCACTGCAACTTCAGGGGG
192 TCTTCAGTCTGCCCCACTGCAACTTCAGGGGG
*
37116989 ATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCTA-GGAGATAAGACTTGTAACTTTAA
1 ATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTC-AGGGAGATAAGACTTGTAACTTCAA
* ** * ** *
37117053 TCCGCTCTACTGCAACTTTTGGGGAGATAGAATTATTGGCTTTAATCTGCTCCACTGCAACTTCA
65 TCCGCTCCACTGCAACTTTCAGGGAGATAGAATTAGTAACTTTAATCCGCTCCACTGCAACTTCA
* *
37117118 GGGAGATAAGACTTGTAACTTTAATCCGCTCCACAGCAACTTCAAGGAGATAAGATTTGTCATCT
130 GGGAGATAAGACTTGTAACTTTAATCCGCTCCACAGCAACTTCAAGGAGATAAGATTCGCCATCT
* * *
37117183 TCAGTCTGCCCCACTACAACTTTAGGGGA
195 TCAGTCTGCCCCACTGCAACTTCAGGGGG
* * *
37117212 ATAAGACTTGCTTTCTTCAATCTGTTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAAT
1 ATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAAT
* * *
37117277 CCGCTCTACTGCAAC-CTCATGGAGATAG
66 CCGCTCCACTGCAACTTTCAGGGAGATAG
37117305 GATTTGTGCT
Statistics
Matches: 445, Mismatches: 82, Indels: 34
0.79 0.15 0.06
Matches are distributed among these distances:
222 66 0.15
223 293 0.66
224 8 0.02
228 5 0.01
229 1 0.00
231 2 0.00
232 41 0.09
233 29 0.07
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (223 bp):
ATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAAT
CCGCTCCACTGCAACTTTCAGGGAGATAGAATTAGTAACTTTAATCCGCTCCACTGCAACTTCAG
GGAGATAAGACTTGTAACTTTAATCCGCTCCACAGCAACTTCAAGGAGATAAGATTCGCCATCTT
CAGTCTGCCCCACTGCAACTTCAGGGGG
Found at i:37117129 original size:89 final size:88
Alignment explanation
Indices: 37116700--37117159 Score: 421
Period size: 89 Copynumber: 5.2 Consensus size: 88
37116690 TCTTCAGTTT
* * * *
37116700 GCTCCACTGCAACTTCA-GGGAGATAGGATTATTAGCTTTAATCTGCTCCACTGCAAATTCAGGA
1 GCTCCACTGCAACTTTAGGGGAGATAGAATTATT-GCTTTAATCTGCTCCACTGCAACTTCAGGG
* * * * *
37116764 AGATAAGATTTGCCATCTTTAGTCT
65 AGATAAGACTTG-TAACTTTAATCC
* * * * * * * *
37116789 GC-CTCACTACAACTTCAGGGG-GATAAGACTTGCTTTCTTCAGTCTGTTCCACTGCAACTTCAG
1 GCTC-CACTGCAACTTTAGGGGAGAT-AGAATT-ATTGCTTTAATCTGCTCCACTGCAACTTCAG
37116852 GGAGATAAGACTTGTAACTTTAATCC
63 GGAGATAAGACTTGTAACTTTAATCC
* * * * * *
37116878 GCTTCACTGCAACTTCA-GGGAGATAGGATTATTGGCTTTGATCTGCTTCACTGCAACTTCAAGG
1 GCTCCACTGCAACTTTAGGGGAGATAGAATTATT-GCTTTAATCTGCTCCACTGCAACTTCAGGG
* * * * *
37116942 AGATAAGA-TTCGCCATCTTCAGTCT
65 AGATAAGACTT-G-TAACTTTAATCC
* * * * * * *
37116967 GCCCCACTGCAACTTCAGGGG-GATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCTA-
1 GCTCCACTGCAACTTTAGGGGAGAT-AGAATT-ATTGCTTTAATCTGCTCCACTGCAACTTC-AG
37117030 GGAGATAAGACTTGTAACTTTAATCC
63 GGAGATAAGACTTGTAACTTTAATCC
* *
37117056 GCTCTACTGCAACTTTTGGGGAGATAGAATTATTGGCTTTAATCTGCTCCACTGCAACTTCAGGG
1 GCTCCACTGCAACTTTAGGGGAGATAGAATTATT-GCTTTAATCTGCTCCACTGCAACTTCAGGG
37117121 AGATAAGACTTGTAACTTTAATCC
65 AGATAAGACTTGTAACTTTAATCC
*
37117145 GCTCCACAGCAACTT
1 GCTCCACTGCAACTT
37117160 CAAGGAGATA
Statistics
Matches: 296, Mismatches: 58, Indels: 34
0.76 0.15 0.09
Matches are distributed among these distances:
87 4 0.01
88 43 0.15
89 158 0.53
90 84 0.28
91 7 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (88 bp):
GCTCCACTGCAACTTTAGGGGAGATAGAATTATTGCTTTAATCTGCTCCACTGCAACTTCAGGGA
GATAAGACTTGTAACTTTAATCC
Found at i:37117619 original size:24 final size:24
Alignment explanation
Indices: 37117587--37117667 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 24
37117577 TCGGATTGCC
*
37117587 TCCACTGTAATCTTCAAGGTTCAA
1 TCCAATGTAATCTTCAAGGTTCAA
* *
37117611 TCCACTGTAATCTTCTAA-GTTCAG
1 TCCAATGTAATCTTC-AAGGTTCAA
37117635 TCCAATGTAATCTTCAAGGTTCAA
1 TCCAATGTAATCTTCAAGGTTCAA
37117659 TCCAATGTA
1 TCCAATGTA
37117668 CTTTTGGGAC
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
23 2 0.04
24 48 0.92
25 2 0.04
ACGTcount: A:0.30, C:0.23, G:0.12, T:0.35
Consensus pattern (24 bp):
TCCAATGTAATCTTCAAGGTTCAA
Found at i:37124625 original size:21 final size:23
Alignment explanation
Indices: 37124599--37124644 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
37124589 TAAAGGGTAT
*
37124599 TTAC-AAATTAAATC-TCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
*
37124620 TTACAAAATCATATCTTCTAAGA
1 TTACAAAATCAAATCTTCTAAGA
37124643 TT
1 TT
37124645 GCATATCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 4 0.19
22 8 0.38
23 9 0.43
ACGTcount: A:0.43, C:0.15, G:0.04, T:0.37
Consensus pattern (23 bp):
TTACAAAATCAAATCTTCTAAGA
Found at i:37124643 original size:23 final size:22
Alignment explanation
Indices: 37124599--37124657 Score: 66
Period size: 22 Copynumber: 2.7 Consensus size: 22
37124589 TAAAGGGTAT
* *
37124599 TTACAAATTAAATC-TCTAAGA
1 TTACAAATCATATCTTCTAAGA
37124620 TTACAAAATCATATCTTCTAAGA
1 TTAC-AAATCATATCTTCTAAGA
* *
37124643 TTGCATATCATATCT
1 TTACAAATCATATCT
37124658 AAGATTGCAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 4 0.12
22 18 0.56
23 10 0.31
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.37
Consensus pattern (22 bp):
TTACAAATCATATCTTCTAAGA
Found at i:37126204 original size:18 final size:18
Alignment explanation
Indices: 37126177--37126215 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
37126167 CTCACCACCA
*
37126177 AATGTGAAAAATGAAGAT
1 AATGTAAAAAATGAAGAT
* *
37126195 AATGTAAAAACTGATGAT
1 AATGTAAAAAATGAAGAT
37126213 AAT
1 AAT
37126216 ATTGATGTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.18, T:0.26
Consensus pattern (18 bp):
AATGTAAAAAATGAAGAT
Found at i:37129976 original size:33 final size:32
Alignment explanation
Indices: 37129903--37129980 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 32
37129893 AAATGTATAC
* *
37129903 ATGTAAGACCATAGCTGAGCTATGGCATCCTG
1 ATGTAAGACCATAACTGAGCTATGGCATACTG
* *
37129935 ATGATAAGACCATAACTGGGTTATGGCATTAC-G
1 ATG-TAAGACCATAACTGAGCTATGGCA-TACTG
37129968 AGTGTAAGACCAT
1 A-TGTAAGACCAT
37129981 GGCAGGGCCA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
32 3 0.08
33 32 0.82
34 4 0.10
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (32 bp):
ATGTAAGACCATAACTGAGCTATGGCATACTG
Found at i:37134502 original size:8 final size:8
Alignment explanation
Indices: 37134491--37134531 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
37134481 TTTCTAAAAG
37134491 TAAAAATA
1 TAAAAATA
37134499 TAAAAATA
1 TAAAAATA
37134507 TAAAAATA
1 TAAAAATA
37134515 T--AAATA
1 TAAAAATA
37134521 TAAAAAT-
1 TAAAAATA
37134528 TAAA
1 TAAA
37134532 TTTTAATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.19
7 4 0.13
8 21 0.68
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (8 bp):
TAAAAATA
Found at i:37136199 original size:18 final size:18
Alignment explanation
Indices: 37136161--37136196 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
37136151 TTATTATTTT
*
37136161 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
37136179 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
37136197 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:37136302 original size:10 final size:9
Alignment explanation
Indices: 37136273--37136298 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
37136263 ATTTTATATT
37136273 AATATTTTA
1 AATATTTTA
37136282 AATATTTTA
1 AATATTTTA
37136291 AATATTTT
1 AATATTTT
37136299 TAAAAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
AATATTTTA
Found at i:37137035 original size:28 final size:28
Alignment explanation
Indices: 37137003--37137057 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
37136993 TAGAAATTAA
37137003 TTATTATAAAAATATCTTA-AATTAAATT
1 TTATTATAAAAATAT-TTATAATTAAATT
* *
37137031 TTATTATATAATTATTTATAATTAAAT
1 TTATTATAAAAATATTTATAATTAAAT
37137058 AGACATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 3 0.12
28 21 0.88
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (28 bp):
TTATTATAAAAATATTTATAATTAAATT
Found at i:37137714 original size:19 final size:19
Alignment explanation
Indices: 37137678--37137716 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37137668 ATTGATATGA
*
37137678 TTAAAAAATAATAGTTATT
1 TTAAAAAAGAATAGTTATT
37137697 TTAAAAAAGATATA-TTATT
1 TTAAAAAAGA-ATAGTTATT
37137716 T
1 T
37137717 GGTGACCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 15 0.83
20 3 0.17
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (19 bp):
TTAAAAAAGAATAGTTATT
Found at i:37148811 original size:19 final size:19
Alignment explanation
Indices: 37148787--37148825 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
37148777 AATAAATTAC
*
37148787 TCATCTTAGTTAATTGAGT
1 TCATCTTAGTTAATTAAGT
37148806 TCATCTTAGTTAATTAAGT
1 TCATCTTAGTTAATTAAGT
37148825 T
1 T
37148826 GCTAGAATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (19 bp):
TCATCTTAGTTAATTAAGT
Found at i:37148888 original size:54 final size:53
Alignment explanation
Indices: 37148767--37148888 Score: 163
Period size: 54 Copynumber: 2.3 Consensus size: 53
37148757 CATAAGTATC
* **
37148767 TAGTTGCTGGAATAAATTACTCATCTTAGTTAATTGAGTTCATCTTAGTTAAT
1 TAGTTGCTGGAATAAATTACTCATATTAGTTAATCAAGTTCATCTTAGTTAAT
* * *
37148820 TAAGTTGCTAGAATAAATTCCTCATATTCGTTAATCAAGTTCATCTTAGTTAACT
1 T-AGTTGCTGGAATAAATTACTCATATTAGTTAATCAAGTTCATCTTAGTTAA-T
*
37148875 TAGTTGCCGGAATA
1 TAGTTGCTGGAATA
37148889 CTTTATTATT
Statistics
Matches: 59, Mismatches: 8, Indels: 3
0.84 0.11 0.04
Matches are distributed among these distances:
53 1 0.02
54 56 0.95
55 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.15, T:0.40
Consensus pattern (53 bp):
TAGTTGCTGGAATAAATTACTCATATTAGTTAATCAAGTTCATCTTAGTTAAT
Found at i:37149005 original size:9 final size:9
Alignment explanation
Indices: 37148982--37149018 Score: 56
Period size: 10 Copynumber: 3.9 Consensus size: 9
37148972 TTAGTCTAAT
37148982 ATGTGTTTAA
1 ATGTGTTT-A
37148992 ATGTGTTTA
1 ATGTGTTTA
37149001 ATGTGTTTTA
1 ATGTG-TTTA
37149011 ATGTGTTT
1 ATGTGTTT
37149019 GTTAATAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.35
10 17 0.65
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.57
Consensus pattern (9 bp):
ATGTGTTTA
Found at i:37149006 original size:19 final size:19
Alignment explanation
Indices: 37148982--37149018 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
37148972 TTAGTCTAAT
37148982 ATGTGTTTAAATGTGTTTA
1 ATGTGTTTAAATGTGTTTA
*
37149001 ATGTGTTTTAATGTGTTT
1 ATGTGTTTAAATGTGTTT
37149019 GTTAATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.22, T:0.57
Consensus pattern (19 bp):
ATGTGTTTAAATGTGTTTA
Found at i:37149070 original size:64 final size:64
Alignment explanation
Indices: 37148996--37149115 Score: 204
Period size: 64 Copynumber: 1.9 Consensus size: 64
37148986 GTTTAAATGT
*
37148996 GTTTAATGTGTTTTAATGTGTTTGTTAATAAATGCTTGCAAGTGACTATTTAGTTGCTTATTAA
1 GTTTAATGTGTTTAAATGTGTTTGTTAATAAATGCTTGCAAGTGACTATTTAGTTGCTTATTAA
* * *
37149060 GTTTAGTGTGTTTAAATGTGTTTGTTAATAAATGTTTGCAGGTGACTATTTAGTTG
1 GTTTAATGTGTTTAAATGTGTTTGTTAATAAATGCTTGCAAGTGACTATTTAGTTG
37149116 GAATCAGTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
64 52 1.00
ACGTcount: A:0.25, C:0.05, G:0.22, T:0.48
Consensus pattern (64 bp):
GTTTAATGTGTTTAAATGTGTTTGTTAATAAATGCTTGCAAGTGACTATTTAGTTGCTTATTAA
Found at i:37151835 original size:103 final size:101
Alignment explanation
Indices: 37151728--37151938 Score: 386
Period size: 103 Copynumber: 2.1 Consensus size: 101
37151718 TTTTATAACA
*
37151728 AAAATTACTTTTTATTTTTAAAATAATAGGATACAAATACTAAATCAATCTACAAATAATTCTAT
1 AAAATAACTTTTTATTTTTAAAATAATAGGATACAAATACTAAATCAATCTACAAATAATTCTAT
37151793 AAATCAATTTATTAAAAATAATAAAGTTATTATTATTT
66 AAATCAATTTATTAAAAATAAT--AGTTATTATTATTT
*
37151831 AAAATAACTTTTTATTTTTAAAATAATAGGATACAAATACTAAATCGATCTACAAATAATTCTAT
1 AAAATAACTTTTTATTTTTAAAATAATAGGATACAAATACTAAATCAATCTACAAATAATTCTAT
37151896 AAATCAATTTATTAAAAATAATAGTTATTATTATTT
66 AAATCAATTTATTAAAAATAATAGTTATTATTATTT
37151932 AAAATAA
1 AAAATAA
37151939 TAATTATTTA
Statistics
Matches: 106, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
101 21 0.20
103 85 0.80
ACGTcount: A:0.49, C:0.08, G:0.03, T:0.40
Consensus pattern (101 bp):
AAAATAACTTTTTATTTTTAAAATAATAGGATACAAATACTAAATCAATCTACAAATAATTCTAT
AAATCAATTTATTAAAAATAATAGTTATTATTATTT
Found at i:37151935 original size:22 final size:22
Alignment explanation
Indices: 37151904--37151946 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
37151894 ATAAATCAAT
*
37151904 TTATTAAAAATAATAGTTATTA
1 TTATTAAAAATAATAATTATTA
*
37151926 TTATTTAAAATAATAATTATT
1 TTATTAAAAATAATAATTATT
37151947 TAACTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (22 bp):
TTATTAAAAATAATAATTATTA
Found at i:37153793 original size:28 final size:25
Alignment explanation
Indices: 37153762--37153823 Score: 79
Period size: 28 Copynumber: 2.4 Consensus size: 25
37153752 TATCTATGTA
37153762 TATATATATTATAAAATATGAAAAAATG
1 TATATATATTATAAAA-AT--AAAAATG
* *
37153790 TATAAATATTATAAAAATATAAATG
1 TATATATATTATAAAAATAAAAATG
37153815 TATATATAT
1 TATATATAT
37153824 AAAAACTAAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
25 14 0.45
27 2 0.06
28 15 0.48
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (25 bp):
TATATATATTATAAAAATAAAAATG
Found at i:37153955 original size:3 final size:3
Alignment explanation
Indices: 37153932--37154017 Score: 111
Period size: 3 Copynumber: 28.7 Consensus size: 3
37153922 ATAAGTATAG
* * * *
37153932 TAA TAA TAC TATA TAA T-A TAA TAA TAA TAA TAA TAC TAC CAA TAA
1 TAA TAA TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
*
37153977 TAA TAA TAA TAA TAA TAA TAA TAG TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
37154018 CAAAAATAAC
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
2 2 0.03
3 69 0.95
4 2 0.03
ACGTcount: A:0.60, C:0.05, G:0.01, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:37155960 original size:207 final size:207
Alignment explanation
Indices: 37155605--37156020 Score: 823
Period size: 207 Copynumber: 2.0 Consensus size: 207
37155595 ATCTACTTCA
37155605 CGCCAATACATGAAGACAAGATCTGCTTTTTCAATCGATTCCACTGCCGACCGGGGAGGTAGAAT
1 CGCCAATACATGAAGACAAGATCTGCTTTTTCAATCGATTCCACTGCCGACCGGGGAGGTAGAAT
37155670 TACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCC
66 TACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCC
*
37155735 ACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCAATCTATTTCCCCGCCGGTATGGGAAGATAA
131 ACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCAATCTATTTCACCGCCGGTATGGGAAGATAA
37155800 AATATGTATATT
196 AATATGTATATT
37155812 CGCCAATACATGAAGACAAGATCTGCTTTTTCAATCGATTCCACTGCCGACCGGGGAGGTAGAAT
1 CGCCAATACATGAAGACAAGATCTGCTTTTTCAATCGATTCCACTGCCGACCGGGGAGGTAGAAT
37155877 TACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCC
66 TACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCC
37155942 ACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCAATCTATTTCACCGCCGGTATGGGAAGATAA
131 ACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCAATCTATTTCACCGCCGGTATGGGAAGATAA
37156007 AATATGTATATT
196 AATATGTATATT
37156019 CG
1 CG
37156021 GTCCACTTCG
Statistics
Matches: 208, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
207 208 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (207 bp):
CGCCAATACATGAAGACAAGATCTGCTTTTTCAATCGATTCCACTGCCGACCGGGGAGGTAGAAT
TACTGGCTTCAATATACTCCACTGCAACTTCAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCC
ACTACTGCTTAGGGAGGCAAAATCTGTAATCTTCAATCTATTTCACCGCCGGTATGGGAAGATAA
AATATGTATATT
Found at i:37156093 original size:44 final size:44
Alignment explanation
Indices: 37156060--37156460 Score: 347
Period size: 44 Copynumber: 9.1 Consensus size: 44
37156050 GGACCTACTA
* * *
37156060 TCTTTGATCTACTTCACGCCAGTACATGAAGACACGATCTGTTT
1 TCTTTGATCTACTTCACACCAGTACATGAAGACAAGATCTGCTT
* * * *** * * *
37156104 TCTTCGACCTACTCCACCACCAGTATGGGGAGACAATATCT-ATT
1 TCTTTGATCTACTTCA-CACCAGTACATGAAGACAAGATCTGCTT
* * *
37156148 TCTTTGATCTACTTCACGCCAGTACATGAAAACAAGATCTACTT
1 TCTTTGATCTACTTCACACCAGTACATGAAGACAAGATCTGCTT
* * *** * *
37156192 TCTTTGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGCTA
1 TCTTTGATCTACTTC-ACACCAGTACATGAAGACAAGATCTGCTT
* *
37156237 TCTTTGATCTACTTCACACTAGTACATGAAGACAAGATCTGTTT
1 TCTTTGATCTACTTCACACCAGTACATGAAGACAAGATCTGCTT
* * * *** * *
37156281 TCTTCGATCTGCTTCGCCACCAGTATGGGAAGGCAAGATCTGCTA
1 TCTTTGATCTACTTC-ACACCAGTACATGAAGACAAGATCTGCTT
* * **
37156326 TCTTTGATCTACTTCACGCCAGTACATGAAGAAAAGATCTATTT
1 TCTTTGATCTACTTCACACCAGTACATGAAGACAAGATCTGCTT
* * *** * *
37156370 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGGTA
1 TCTTTGATCTACTTC-ACACCAGTACATGAAGACAAGATCTGCTT
* *
37156415 TCTTTGATCTACTTTACGCCAGTACATGAAGACAAGATCTG-TT
1 TCTTTGATCTACTTCACACCAGTACATGAAGACAAGATCTGCTT
37156458 TCT
1 TCT
37156461 ACAATCTATT
Statistics
Matches: 271, Mismatches: 81, Indels: 11
0.75 0.22 0.03
Matches are distributed among these distances:
43 21 0.08
44 132 0.49
45 118 0.44
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.31
Consensus pattern (44 bp):
TCTTTGATCTACTTCACACCAGTACATGAAGACAAGATCTGCTT
Found at i:37156265 original size:89 final size:89
Alignment explanation
Indices: 37156042--37156454 Score: 594
Period size: 89 Copynumber: 4.7 Consensus size: 89
37156032 TACCAACATA
* * * * *
37156042 GGAAGACAGGACCTACTATCTTTGATCTACTTCACGCCAGTACATGAAGACACGATCTGTTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCT
* * *
37156107 TCGACCTACTCCACCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* * * * * *
37156131 GGGAGACAATATCT-ATTTCTTTGATCTACTTCACGCCAGTACATGAAAACAAGATCTACTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCT
* *
37156195 TTGATCTGCTTCGCCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* * * *
37156219 GGAAGGCAAGATCTGCTATCTTTGATCTACTTCACACTAGTACATGAAGACAAGATCTGTTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCT
*
37156284 TCGATCTGCTTCGCCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* *
37156308 GGAAGGCAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGAAAAGATCTATTTTCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCT
37156373 TCGATCTACTTCGCCACCAGTATG
66 TCGATCTACTTCGCCACCAGTATG
* *
37156397 GGAAGACAAGATCTGGTATCTTTGATCTACTTTACGCCAGTACATGAAGACAAGATCT
1 GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCT
37156455 GTTTCTACAA
Statistics
Matches: 288, Mismatches: 35, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
88 74 0.26
89 214 0.74
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (89 bp):
GGAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAGTACATGAAGACAAGATCTATTTTCT
TCGATCTACTTCGCCACCAGTATG
Found at i:37158008 original size:46 final size:44
Alignment explanation
Indices: 37157938--37158026 Score: 135
Period size: 46 Copynumber: 2.0 Consensus size: 44
37157928 TAGCCTCTCC
37157938 TTTTTTTTACTCAAGGCTCCCTTTGTAGGGTTTCACCCTGGTCT
1 TTTTTTTTACTCAAGGCTCCCTTTGTAGGGTTTCACCCTGGTCT
*
37157982 TTTTTTTTGACTCAAAGAGC-CCCTTTGTAGGGTTTCACCTTGGTC
1 TTTTTTTT-ACTC-AAG-GCTCCCTTTGTAGGGTTTCACCCTGGTC
37158027 CCACCTTTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
44 8 0.20
45 4 0.10
46 27 0.66
47 2 0.05
ACGTcount: A:0.13, C:0.24, G:0.19, T:0.44
Consensus pattern (44 bp):
TTTTTTTTACTCAAGGCTCCCTTTGTAGGGTTTCACCCTGGTCT
Found at i:37162710 original size:18 final size:19
Alignment explanation
Indices: 37162687--37162722 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
37162677 AAAATGGAAG
*
37162687 AATGTATATGTAT-TATAA
1 AATGTAAATGTATATATAA
37162705 AATGTAAATGTATATATA
1 AATGTAAATGTATATATA
37162723 TATNNNNNNN
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (19 bp):
AATGTAAATGTATATATAA
Found at i:37171971 original size:79 final size:82
Alignment explanation
Indices: 37171860--37172044 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
37171850 GCTACTCGTT
* * *
37171860 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
37171923 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
37171940 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
37172003 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
37172020 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37172045 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:37172044 original size:40 final size:40
Alignment explanation
Indices: 37171841--37172044 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
37171831 CGGAATTTAA
** *
37171841 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
37171881 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
37171921 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37171960 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37172000 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37172040 CCGGA
1 CCGGA
37172045 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37184301 original size:62 final size:62
Alignment explanation
Indices: 37184227--37184346 Score: 231
Period size: 62 Copynumber: 1.9 Consensus size: 62
37184217 TATATTGGAT
*
37184227 TGAGAAATTGATTTGAATTGTGAACATGAGAAATTGTGAATTGAATGAAATGGAAATGCTAG
1 TGAGAAATTGATTTGAATTGTGAACATAAGAAATTGTGAATTGAATGAAATGGAAATGCTAG
37184289 TGAGAAATTGATTTGAATTGTGAACATAAGAAATTGTGAATTGAATGAAATGGAAATG
1 TGAGAAATTGATTTGAATTGTGAACATAAGAAATTGTGAATTGAATGAAATGGAAATG
37184347 AAGTTTTGAA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.42, C:0.03, G:0.25, T:0.31
Consensus pattern (62 bp):
TGAGAAATTGATTTGAATTGTGAACATAAGAAATTGTGAATTGAATGAAATGGAAATGCTAG
Found at i:37187582 original size:17 final size:17
Alignment explanation
Indices: 37187543--37187583 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
37187533 AATTAGAATG
37187543 TAAAAATTAAAATAAAA
1 TAAAAATTAAAATAAAA
*
37187560 -ACAAAATTATAATAAAA
1 TA-AAAATTAAAATAAAA
37187577 TAAAAAT
1 TAAAAAT
37187584 GGCTAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
16 1 0.05
17 19 0.90
18 1 0.05
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (17 bp):
TAAAAATTAAAATAAAA
Found at i:37191696 original size:53 final size:53
Alignment explanation
Indices: 37191562--37191759 Score: 227
Period size: 53 Copynumber: 3.7 Consensus size: 53
37191552 CATGATACCA
* * * * * ** *
37191562 TAGTCCTAAATTAGGTCTTACATTATGTGGT-TTTTGTATCCCCATATGATGCC
1 TAGTCCTAGACTAGGTCTTACACTATATGGTCTTCT-TATCTTCATATGATGTC
** * * *
37191615 ATAGTATTAGATTAGGTCTTACATTATATGGTCTTCTTATCTTCATATGATGTT
1 -TAGTCCTAGACTAGGTCTTACACTATATGGTCTTCTTATCTTCATATGATGTC
*
37191669 TAGTCCTCGACTAGGTCTTACACTATATGGTCTTCTTATCTTCATATGATGTC
1 TAGTCCTAGACTAGGTCTTACACTATATGGTCTTCTTATCTTCATATGATGTC
* *
37191722 TAGTCCTAGACTAGGTCTTACACTATATGATATTCTTA
1 TAGTCCTAGACTAGGTCTTACACTATATGGTCTTCTTA
37191760 CCATGGCCAT
Statistics
Matches: 125, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
53 82 0.66
54 40 0.32
55 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.15, T:0.43
Consensus pattern (53 bp):
TAGTCCTAGACTAGGTCTTACACTATATGGTCTTCTTATCTTCATATGATGTC
Found at i:37192563 original size:26 final size:26
Alignment explanation
Indices: 37192508--37192587 Score: 101
Period size: 26 Copynumber: 3.1 Consensus size: 26
37192498 AACATACCAA
* *
37192508 TATCGCAGCAAAG-TGCCAGTAGCAG
1 TATCGCAGCAAAGCTGCCAATATCAG
* *
37192533 CATCGCAGCAGAGCTGCCAATATCAG
1 TATCGCAGCAAAGCTGCCAATATCAG
37192559 TATCGCAGCAAAGCTGCCAGA-ATCAG
1 TATCGCAGCAAAGCTGCCA-ATATCAG
37192585 TAT
1 TAT
37192588 ACTTCCTCCA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
25 11 0.23
26 35 0.74
27 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.24, T:0.17
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAATATCAG
Found at i:37192749 original size:27 final size:26
Alignment explanation
Indices: 37192718--37192769 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
37192708 CATAAGGTCG
*
37192718 TAACAGTCATTTTGACTCCTA-GGGGTA
1 TAACAATCATTTT-AC-CCTACGGGGTA
37192745 TAACAATCATTTTACCCTACGGGGT
1 TAACAATCATTTTACCCTACGGGGT
37192770 CATTTTATCC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 4 0.17
26 7 0.30
27 12 0.52
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
TAACAATCATTTTACCCTACGGGGTA
Found at i:37192815 original size:27 final size:27
Alignment explanation
Indices: 37192767--37193150 Score: 363
Period size: 27 Copynumber: 14.3 Consensus size: 27
37192757 TACCCTACGG
* *
37192767 GGTCATTTTA-TCCTTCAGGGGTATTTC
1 GGTCATTTTACCCCTTGA-GGGTATTTC
*
37192794 GGTCATGTTACCCCTTGAGGGTATTTC
1 GGTCATTTTACCCCTTGAGGGTATTTC
* * *
37192821 GATCATTTTA-CCTTTTAGGGGTATTTC
1 GGTCATTTTACCCCTTGA-GGGTATTTC
*
37192848 GGTCATTTTACCCC-TAAGGGGTATTTC
1 GGTCATTTTACCCCTTGA-GGGTATTTC
* * * *
37192875 GGTCATTTTACCCTTTAAAGGTATTTT
1 GGTCATTTTACCCCTTGAGGGTATTTC
* *
37192902 AGTCATTTTA-CCCTATGGGGGTATTTC
1 GGTCATTTTACCCCT-TGAGGGTATTTC
* *
37192929 GGTCATTTTACCCCTCGGGGGTATTTC
1 GGTCATTTTACCCCTTGAGGGTATTTC
* *
37192956 GATCATTTTACCCTTTGA-GGTATTTC
1 GGTCATTTTACCCCTTGAGGGTATTTC
** *
37192982 AATCATTTTA-CCCTTCAGGGTATTTC
1 GGTCATTTTACCCCTTGAGGGTATTTC
* *
37193008 GGTCATTTTACCCATCGAGGGTATTTC
1 GGTCATTTTACCCCTTGAGGGTATTTC
* *
37193035 AGTCATTTTA-CCCTTTAGGGGTATTTC
1 GGTCATTTTACCCCTTGA-GGGTATTTC
*
37193062 GATCATTTTACCCCTTGAGGGTATTTC
1 GGTCATTTTACCCCTTGAGGGTATTTC
** *
37193089 AATCATTTTA-CCCTTTAGGGGTATTTC
1 GGTCATTTTACCCCTTGA-GGGTATTTC
* *
37193116 GATCATTTTA-TCCTTCGAGGGTATTTC
1 GGTCATTTTACCCCTT-GAGGGTATTTC
*
37193143 AGTCATTT
1 GGTCATTT
37193151 GCCCACAAAT
Statistics
Matches: 298, Mismatches: 47, Indels: 24
0.81 0.13 0.07
Matches are distributed among these distances:
25 5 0.02
26 51 0.17
27 221 0.74
28 21 0.07
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.42
Consensus pattern (27 bp):
GGTCATTTTACCCCTTGAGGGTATTTC
Found at i:37192851 original size:54 final size:54
Alignment explanation
Indices: 37192769--37193150 Score: 445
Period size: 54 Copynumber: 7.1 Consensus size: 54
37192759 CCCTACGGGG
* * *
37192769 TCATTTTATCCTTCAGGGGTATTTCGGTCATGTTACCCCTTGAGGGTATTTCGA
1 TCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCCCTTGAGGGTATTTCGA
* * *
37192823 TCATTTTACCTTTTAGGGGTATTTCGGTCATTTTACCCC-TAAGGGGTATTTCGG
1 TCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCCCTTGA-GGGTATTTCGA
** ** * *
37192877 TCATTTTACCCTTTAAAGGTATTTTAGTCATTTTA-CCCTATGGGGGTATTTCGG
1 TCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCCCT-TGAGGGTATTTCGA
* ** * * *
37192931 TCATTTTACCCCTCGGGGGTATTTCGATCATTTTACCCTTTGA-GGTATTTCAA
1 TCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCCCTTGAGGGTATTTCGA
* * *
37192984 TCATTTTACCCTTCA-GGGTATTTCGGTCATTTTACCCATCGAGGGTATTTC-A
1 TCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCCCTTGAGGGTATTTCGA
* *
37193036 GTCATTTTACCCTTTAGGGGTATTTCGATCATTTTACCCCTTGAGGGTATTTCAA
1 -TCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCCCTTGAGGGTATTTCGA
* *
37193091 TCATTTTACCCTTTAGGGGTATTTCGATCATTTTA-TCCTTCGAGGGTATTTC-A
1 TCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCCCTT-GAGGGTATTTCGA
37193144 GTCATTT
1 -TCATTT
37193151 GCCCACAAAT
Statistics
Matches: 283, Mismatches: 35, Indels: 20
0.84 0.10 0.06
Matches are distributed among these distances:
52 25 0.09
53 53 0.19
54 200 0.71
55 5 0.02
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.43
Consensus pattern (54 bp):
TCATTTTACCCTTTAGGGGTATTTCGGTCATTTTACCCCTTGAGGGTATTTCGA
Found at i:37192908 original size:81 final size:81
Alignment explanation
Indices: 37192767--37193150 Score: 411
Period size: 81 Copynumber: 4.8 Consensus size: 81
37192757 TACCCTACGG
* * * * * *
37192767 GGTCATTTTATCCTTCAGGGGTATTTCGGTCATGTTACCCCTTGAGGGTA-TTTCGATCATTTTA
1 GGTCATTTTACCCCTCAGGGGTATTTCGGTCATTTTACCCTTTAAGGGTATTTTAG-TCATTTTA
*
37192831 CCTTTTAGGGGTATTTC
65 CCCTTTAGGGGTATTTC
* *
37192848 GGTCATTTTACCCCTAAGGGGTATTTCGGTCATTTTACCCTTTAAAGGTATTTTAGTCATTTTAC
1 GGTCATTTTACCCCTCAGGGGTATTTCGGTCATTTTACCCTTTAAGGGTATTTTAGTCATTTTAC
* *
37192913 CCTATGGGGGTATTTC
66 CCTTTAGGGGTATTTC
* * * * *
37192929 GGTCATTTTACCCCTCGGGGGTATTTCGATCATTTTACCCTTTGA-GGTATTTCAATCATTTTAC
1 GGTCATTTTACCCCTCAGGGGTATTTCGGTCATTTTACCCTTTAAGGGTATTTTAGTCATTTTAC
*
37192993 CCTTCA-GGGTATTTC
66 CCTTTAGGGGTATTTC
* * * *
37193008 GGTCATTTTACCCATC-GAGGGTATTTCAGTCATTTTACCCTTTAGGGGTA-TTTCGATCATTTT
1 GGTCATTTTACCCCTCAG-GGGTATTTCGGTCATTTTACCCTTTAAGGGTATTTTAG-TCATTTT
*
37193071 ACCCCTT-GAGGGTATTTC
64 ACCCTTTAG-GGGTATTTC
** * * * * ** *
37193089 AATCATTTTACCCTTTAGGGGTATTTCGATCATTTTATCCTTCGAGGGTATTTCAGTCATTT
1 GGTCATTTTACCCCTCAGGGGTATTTCGGTCATTTTACCCTTTAAGGGTATTTTAGTCATTT
37193151 GCCCACAAAT
Statistics
Matches: 253, Mismatches: 42, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
78 1 0.00
79 49 0.19
80 36 0.14
81 159 0.63
82 8 0.03
ACGTcount: A:0.18, C:0.20, G:0.19, T:0.42
Consensus pattern (81 bp):
GGTCATTTTACCCCTCAGGGGTATTTCGGTCATTTTACCCTTTAAGGGTATTTTAGTCATTTTAC
CCTTTAGGGGTATTTC
Found at i:37196072 original size:30 final size:28
Alignment explanation
Indices: 37196007--37196064 Score: 98
Period size: 28 Copynumber: 2.1 Consensus size: 28
37195997 ATTTGAAAGG
*
37196007 AACTCTTATATTAGCCAATAAATATATC
1 AACTCTTATATTAGCCAACAAATATATC
*
37196035 AACTCTTATATTCGCCAACAAATATATC
1 AACTCTTATATTAGCCAACAAATATATC
37196063 AA
1 AA
37196065 AACTCTTACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.21, G:0.03, T:0.33
Consensus pattern (28 bp):
AACTCTTATATTAGCCAACAAATATATC
Found at i:37196688 original size:54 final size:55
Alignment explanation
Indices: 37196516--37196710 Score: 143
Period size: 54 Copynumber: 3.6 Consensus size: 55
37196506 TACAAAGTGT
* * * *
37196516 GAGCAAACTTGCGGACAACAATGGTG-TGAGCTGTCACGC-ATACAGACCAAAAGC
1 GAGCAAACTCGCGGACAACAATGGTGCAGAGCTGTCATGCGA-ACAGACCAAATGC
** * ** **
37196570 GAGCTGACTCGCGGACAGCAAT-G-GCACGAATTGTCATGCGAACAG-CCACGGTGC
1 GAGCAAACTCGCGGACAACAATGGTGCA-GAGCTGTCATGCGAACAGACCA-AATGC
* * * **
37196624 GGGCAGACTCGCGGACAACAATGGTGCAG-GCTGTCATGCGGACAGACCATTTGC
1 GAGCAAACTCGCGGACAACAATGGTGCAGAGCTGTCATGCGAACAGACCAAATGC
* *
37196678 GAGCAAACTCGCGGACGAAAAAAGGTGC-GAGCT
1 GAGCAAACTCGCGGAC-AACAATGGTGCAGAGCT
37196711 ATCTTGGGAA
Statistics
Matches: 109, Mismatches: 23, Indels: 17
0.73 0.15 0.11
Matches are distributed among these distances:
52 1 0.01
53 4 0.04
54 83 0.76
55 18 0.17
56 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.31, T:0.14
Consensus pattern (55 bp):
GAGCAAACTCGCGGACAACAATGGTGCAGAGCTGTCATGCGAACAGACCAAATGC
Found at i:37206504 original size:20 final size:21
Alignment explanation
Indices: 37206473--37206511 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
37206463 TTAATGTATG
*
37206473 ATCATATTAAATTATTTAAAT
1 ATCATATTAAATTAATTAAAT
37206494 ATCAT-TTAAATTAATTAA
1 ATCATATTAAATTAATTAA
37206512 TTAATTTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.49, C:0.05, G:0.00, T:0.46
Consensus pattern (21 bp):
ATCATATTAAATTAATTAAAT
Found at i:37210476 original size:20 final size:20
Alignment explanation
Indices: 37210451--37210490 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
37210441 TTAGAGTCAA
37210451 TTGCTCTTATTGTTGAAGAG
1 TTGCTCTTATTGTTGAAGAG
37210471 TTGCTCTTATTGTTGAAGAG
1 TTGCTCTTATTGTTGAAGAG
37210491 ATATATTAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.10, G:0.25, T:0.45
Consensus pattern (20 bp):
TTGCTCTTATTGTTGAAGAG
Found at i:37218743 original size:24 final size:25
Alignment explanation
Indices: 37218716--37218764 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
37218706 GAAACATACT
*
37218716 TTAAAA-TTCATCCGAAATGCCTTA
1 TTAAAATTTCATACGAAATGCCTTA
37218740 TTAAAATTTCATACGAAATGCCTTA
1 TTAAAATTTCATACGAAATGCCTTA
37218765 CCTCCTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.39, C:0.18, G:0.08, T:0.35
Consensus pattern (25 bp):
TTAAAATTTCATACGAAATGCCTTA
Found at i:37226151 original size:40 final size:40
Alignment explanation
Indices: 37226114--37226339 Score: 330
Period size: 40 Copynumber: 5.7 Consensus size: 40
37226104 GCTACTCGTT
* *
37226114 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
37226154 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
37226194 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
37226234 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* ** * * * *
37226274 CAAATGCCTTCGGGTCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
*
37226315 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
37226340 CATCATTCAA
Statistics
Matches: 173, Mismatches: 11, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
40 163 0.94
41 10 0.06
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:37234141 original size:40 final size:39
Alignment explanation
Indices: 37234104--37234195 Score: 132
Period size: 39 Copynumber: 2.3 Consensus size: 39
37234094 GCTACTCGTT
*
37234104 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGG-CATAGCCCGGAAT-TAGTAACTCGCA
* *
37234144 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
37234183 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37234196 ATCTTAGTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
39 33 0.69
40 15 0.31
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGCATAGCCCGGAATTAGTAACTCGCA
Found at i:37234175 original size:39 final size:40
Alignment explanation
Indices: 37234085--37234248 Score: 176
Period size: 40 Copynumber: 4.1 Consensus size: 40
37234075 CGGAATTTAA
** *
37234085 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
*
37234125 CCGGTTATAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
37234164 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
37234204 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
37234244 CCGGA
1 CCGGA
37234249 CATCATTCAA
Statistics
Matches: 105, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.03
39 32 0.30
40 58 0.55
41 12 0.11
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:37237284 original size:81 final size:81
Alignment explanation
Indices: 37237148--37237310 Score: 308
Period size: 81 Copynumber: 2.0 Consensus size: 81
37237138 ATGGCTTTCA
37237148 TTAAAAATATGGAATTGATATAAAGAGAAAACATGATAAATGAATTAAAGGGTAGAGTTTAAGAA
1 TTAAAAATATGGAATTGATATAAAGAGAAAACATGATAAATGAATTAAAGGGTAGAGTTTAAGAA
37237213 AATGCGAAATTTGTAT
66 AATGCGAAATTTGTAT
*
37237229 TTAAAAATATGGAATTGATATAAAGAGAAAACATGATAAATGAATTAAAGTGTAGAGTTTAAGAA
1 TTAAAAATATGGAATTGATATAAAGAGAAAACATGATAAATGAATTAAAGGGTAGAGTTTAAGAA
*
37237294 AATGCGCAATTTGTAT
66 AATGCGAAATTTGTAT
37237310 T
1 T
37237311 AAAGATAAAA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
81 80 1.00
ACGTcount: A:0.48, C:0.03, G:0.19, T:0.29
Consensus pattern (81 bp):
TTAAAAATATGGAATTGATATAAAGAGAAAACATGATAAATGAATTAAAGGGTAGAGTTTAAGAA
AATGCGAAATTTGTAT
Found at i:37239212 original size:238 final size:238
Alignment explanation
Indices: 37238917--37239935 Score: 2029
Period size: 238 Copynumber: 4.3 Consensus size: 238
37238907 TAAGGTTAAA
*
37238917 TTAGTAAATTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
1 TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
37238982 AAACACCACGAAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTCGGCCATCCTTATTTT
66 AAACACCACGAAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTCGGCCATCCTTATTTT
37239047 GCTTGCATGTGAGTATTTTTCGTCTTGTTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
131 GCTTGCATGTGAGTATTTTTCGTCTTGTTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
37239112 TAATCTAGCTAGCCTGGGACTAATTTGCAAACATGTTAATAAG
196 TAATCTAGCTAGCCTGGGACTAATTTGCAAACATGTTAATAAG
37239155 TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
1 TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
37239220 AAACACCACGAAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTCGGCCATCCTTATTTT
66 AAACACCACGAAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTCGGCCATCCTTATTTT
37239285 GCTTGCATGTGAGTATTTTTCGTCTTGTTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
131 GCTTGCATGTGAGTATTTTTCGTCTTGTTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
37239350 TAATCTAGCTAGCCTGGGACTAATTTGCAAACATGTTAATAAG
196 TAATCTAGCTAGCCTGGGACTAATTTGCAAACATGTTAATAAG
37239393 TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
1 TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
37239458 AAACACCACGAAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTCGGCCATCCTTATTTT
66 AAACACCACGAAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTCGGCCATCCTTATTTT
37239523 GCTTGCATGTGAGTATTTTTCGTCTTGTTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
131 GCTTGCATGTGAGTATTTTTCGTCTTGTTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
37239588 TAATCTAGCTAGCCTGGGACTAATTTGCAAACATGTTAATAAG
196 TAATCTAGCTAGCCTGGGACTAATTTGCAAACATGTTAATAAG
37239631 TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
1 TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
37239696 AAACACCACGAAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTCGGCCATCCTTATTTT
66 AAACACCACGAAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTCGGCCATCCTTATTTT
37239761 GCTTGCATGTGAGTATTTTTCGTCTTGTTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
131 GCTTGCATGTGAGTATTTTTCGTCTTGTTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
37239826 TAATCTAGCTAGCCTGGGACTAATTTGCAAACATGTTAATAAG
196 TAATCTAGCTAGCCTGGGACTAATTTGCAAACATGTTAATAAG
37239869 TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
1 TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
37239934 AA
66 AA
37239936 TGTAACACCC
Statistics
Matches: 780, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
238 780 1.00
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (238 bp):
TTAGTAATTTAGTTAATAAGTGAATTAAAACAAAAGAAATAATGTATCATCTTCTTTAATTTGTT
AAACACCACGAAAAATTGAACGAAAAGAAACCATAGAAGCTTGAACATTCGGCCATCCTTATTTT
GCTTGCATGTGAGTATTTTTCGTCTTGTTTTTAATGATTTCTATGTTTTTAGAATCGTTGTAGCT
TAATCTAGCTAGCCTGGGACTAATTTGCAAACATGTTAATAAG
Found at i:37240837 original size:81 final size:80
Alignment explanation
Indices: 37240702--37240861 Score: 284
Period size: 81 Copynumber: 2.0 Consensus size: 80
37240692 TCCACACCAA
*
37240702 ATGATTATAACAATATACTCAAACACATATAAGCCATTTTCGCATGGCTATCCAAAATTTATACA
1 ATGATTATAACAATACACTCAAACACATATAAGCCATTTTCGCATGGCTATCCAAAA-TTATACA
37240767 AGTCCAAAGGGTCCAC
65 AGTCCAAAGGGTCCAC
* *
37240783 ATGATTATAACATTACACTCAAACATATATAAGCCATTTTCGCATGGCTATCCAAAATTATACAA
1 ATGATTATAACAATACACTCAAACACATATAAGCCATTTTCGCATGGCTATCCAAAATTATACAA
37240848 GTCCAAAGGGTCCA
66 GTCCAAAGGGTCCA
37240862 TGACCCACAA
Statistics
Matches: 76, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
80 22 0.29
81 54 0.71
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (80 bp):
ATGATTATAACAATACACTCAAACACATATAAGCCATTTTCGCATGGCTATCCAAAATTATACAA
GTCCAAAGGGTCCAC
Found at i:37241529 original size:39 final size:39
Alignment explanation
Indices: 37241371--37241540 Score: 220
Period size: 40 Copynumber: 4.3 Consensus size: 39
37241361 GCTCCTCGTT
** *
37241371 CAAATGCCTTCGGGACACAGCCCGGTTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAT-TAGT-ATCTCGCA
* *
37241411 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGA-TTAGTATCTCGCA
* *
37241451 CAAATGCCTTCGGG-CTTAGCCCAGATTAGTATGTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTAGTATCTCGCA
37241489 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTAGTATCTCGCA
37241528 CAAATGCCTTCGG
1 CAAATGCCTTCGG
37241541 ATCATAGTCC
Statistics
Matches: 116, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
38 34 0.29
39 36 0.31
40 45 0.39
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTAGTATCTCGCA
Found at i:37241586 original size:117 final size:118
Alignment explanation
Indices: 37241371--37241589 Score: 254
Period size: 117 Copynumber: 1.9 Consensus size: 118
37241361 GCTCCTCGTT
* *
37241371 CAAATGCCTTCGGGACACAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACACAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACATAACCCGG
* *
37241436 ATTTAGTAACTCGCACAAATGCCTTCGGGCTTAGCCCAGATTAGTATGTCGCA
66 ATTTAGTAACTAGCACAAATGCCTTCGGACTTAGCCCAGATTAGTATGTCGCA
** **
37241489 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGT-ATCTCGCACAAATGCCTTC-GGATCATAGTC
1 CAAATGCCTTCGGGACACAGCCCGGATA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CATAACC
*
37241550 CGGATATT-GTCACTTAGCAC-AA-GCCTTCGAGACTTAGCCC
63 CGGAT-TTAGTAAC-TAGCACAAATGCCTTCG-GACTTAGCCC
37241590 GGACATCATT
Statistics
Matches: 86, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
116 13 0.15
117 52 0.60
118 21 0.24
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (118 bp):
CAAATGCCTTCGGGACACAGCCCGGATATAGTAATTCGCACAAATGCCTTCGGGACATAACCCGG
ATTTAGTAACTAGCACAAATGCCTTCGGACTTAGCCCAGATTAGTATGTCGCA
Found at i:37249403 original size:40 final size:40
Alignment explanation
Indices: 37249359--37249622 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
37249349 GCTCCTCGTT
* *
37249359 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
37249399 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
37249439 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
37249479 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
37249519 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
37249558 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
37249599 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
37249623 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:37256108 original size:51 final size:50
Alignment explanation
Indices: 37256045--37256213 Score: 155
Period size: 51 Copynumber: 3.3 Consensus size: 50
37256035 GCACGGATTG
* * *
37256045 TGTGTAGGCTACTATGTAAAAGTGAAAGTGATGGTCACGTGTGTAGTACTA
1 TGTGCAGGCTACTATGTAAACG-GAAAGTGATGGTCACATGTGTAGTACTA
* * * * *
37256096 TATGCAGGCTACTACGTGT-ACCGG-AA-TGATAAGTCGCAAGTGTAGTACTA
1 TGTGCAGGCTACTA--TGTAAACGGAAAGTGAT-GGTCACATGTGTAGTACTA
* * ** *
37256146 TGTGCAGGCTACTACGTATATCGGATGGTAATGGTCACATGTGTAGTACTA
1 TGTGCAGGCTACTATGTA-AACGGAAAGTGATGGTCACATGTGTAGTACTA
37256197 TGTGCAGGCTACTATGT
1 TGTGCAGGCTACTATGT
37256214 GAACCGAACA
Statistics
Matches: 93, Mismatches: 18, Indels: 14
0.74 0.14 0.11
Matches are distributed among these distances:
48 2 0.02
49 4 0.04
50 34 0.37
51 45 0.48
52 5 0.05
53 3 0.03
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (50 bp):
TGTGCAGGCTACTATGTAAACGGAAAGTGATGGTCACATGTGTAGTACTA
Found at i:37256143 original size:50 final size:50
Alignment explanation
Indices: 37256085--37256219 Score: 173
Period size: 51 Copynumber: 2.7 Consensus size: 50
37256075 ATGGTCACGT
* *
37256085 GTGTAGTACTATATGCAGGCTACTACGTGTACCGGAATGATAA-GTCGCAA
1 GTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGATAAGGTCACAA
* * * *
37256135 GTGTAGTACTATGTGCAGGCTACTACGTATATCGGATGGTAATGGTCACAT
1 GTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGATAA-GGTCACAA
* *
37256186 GTGTAGTACTATGTGCAGGCTACTATGTGAACCG
1 GTGTAGTACTATGTGCAGGCTACTACGTGTACCG
37256220 AACATCATTG
Statistics
Matches: 73, Mismatches: 10, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
49 6 0.08
50 32 0.44
51 35 0.48
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (50 bp):
GTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGATAAGGTCACAA
Found at i:37256267 original size:45 final size:45
Alignment explanation
Indices: 37256216--37256310 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
37256206 TACTATGTGA
* * *
37256216 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGATGCTATGTGCTGAATCC
*
37256261 ACCGAACATCATTGATTAATAAGGTGGATGCTATGTGTTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGATGCTATGTGCTGAATCC
37256306 ACCGA
1 ACCGA
37256311 GTATCTATTA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGATGCTATGTGCTGAATCC
Found at i:37260374 original size:44 final size:43
Alignment explanation
Indices: 37260326--37260607 Score: 182
Period size: 44 Copynumber: 6.5 Consensus size: 43
37260316 CGCTTTACTA
* *
37260326 CAACTTCAGAGAGATAGGATTATCGACTTTAATCTACTCCACTG
1 CAACTTCAGGGAGATAAGATTATCGA-TTTAATCTACTCCACTG
* * * *
37260370 CAACTACAGGGAGATAAGATTTTCCATTTTCAGTCTAC-CTCACTG
1 CAACTTCAGGGAGATAAGATTATCGA-TTT-AATCTACTC-CACTG
* * * * * *
37260415 CAACTTTA-GGAGGATAAGACTTGCTTG-TTTAGTCTGCTCCACTA
1 CAACTTCAGGGA-GATAAGA-TT-ATCGATTTAATCTACTCCACTG
* *** * *
37260459 CAACTTCAGGGAGATAAGACT-T-GATGCGATCTGCT-CTCTG
1 CAACTTCAGGGAGATAAGATTATCGATTTAATCTACTCCACTG
* * ** *
37260499 CAACTTCAGAGAGATAAGATCCAAGGTTTTAATGC-ACTCCACTG
1 CAACTTCAGGGAGATAAGAT-TATCGATTTAAT-CTACTCCACTG
* * *
37260543 CAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTG
1 CAACTTCAGGGAGATAAGATTATC-GATTTAATCTACTCCACTG
*
37260587 CAGCTTCAGGGAGATAAGATT
1 CAACTTCAGGGAGATAAGATT
37260608 CGCCATCTTC
Statistics
Matches: 182, Mismatches: 41, Indels: 30
0.72 0.16 0.12
Matches are distributed among these distances:
40 22 0.12
41 8 0.04
43 9 0.05
44 109 0.60
45 31 0.17
46 2 0.01
47 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (43 bp):
CAACTTCAGGGAGATAAGATTATCGATTTAATCTACTCCACTG
Found at i:37260465 original size:217 final size:217
Alignment explanation
Indices: 37260193--37260622 Score: 632
Period size: 217 Copynumber: 2.0 Consensus size: 217
37260183 TAATCCACTC
* * * *
37260193 CACTACAACTTTAGGGAGGTAGGATTTGTTTATTTAGTCTGCTCCACTGCAACTTC-GAGGAGAT
1 CACTACAACTTTAGGGAGGTAAGACTTGCTTATTTAGTCTGCTCCACTACAACTTCAG-GGAGAT
* **
37260257 AAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTTT
65 AAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCC
37260322 ACTACAACTTCAGAGAGATAGGATTATC-GACTTTAATCTACTCCACTGCAACTACAGGGAGATA
130 ACTACAACTTCAGAGAGATAGGATTATCAG-CTTTAATCTACTCCACTGCAACTACAGGGAGATA
** *
37260386 AGATTTTCCATTTTCAGTCTACCT
194 AGATTCGCCATCTTCAGTCTACCT
* *
37260410 CACTGCAACTTTA-GGAGGATAAGACTTGCTTGTTTAGTCTGCTCCACTACAACTTCAGGGAGAT
1 CACTACAACTTTAGGGAGG-TAAGACTTGCTTATTTAGTCTGCTCCACTACAACTTCAGGGAGAT
* * *
37260474 AAGACTTGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATGCACTCC
65 AAGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCC
* * * * *
37260539 ACTGCAACTTCAGGGAGATAGGATTATCAGCTTTAATCTGCTCCACTGCAGCTTCAGGGAGATAA
130 ACTACAACTTCAGAGAGATAGGATTATCAGCTTTAATCTACTCCACTGCAACTACAGGGAGATAA
37260604 GATTCGCCATCTTCAGTCT
195 GATTCGCCATCTTCAGTCT
37260623 TTTAAATTGC
Statistics
Matches: 190, Mismatches: 20, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
216 5 0.03
217 183 0.96
218 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (217 bp):
CACTACAACTTTAGGGAGGTAAGACTTGCTTATTTAGTCTGCTCCACTACAACTTCAGGGAGATA
AGACTAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCACTCCA
CTACAACTTCAGAGAGATAGGATTATCAGCTTTAATCTACTCCACTGCAACTACAGGGAGATAAG
ATTCGCCATCTTCAGTCTACCT
Found at i:37261041 original size:88 final size:88
Alignment explanation
Indices: 37260922--37261581 Score: 719
Period size: 88 Copynumber: 7.5 Consensus size: 88
37260912 ATAAGACTAA
* * * * * * *
37260922 TGTCTTCGATCTGCTTCACTGCCAGTACAGGAAGGCAAGATTTGCTATTTTCAACATACTCCATT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCACT
** * ** *
37260987 ATTGCTCAGGGAGATAGGGCTGG
66 ATAACCCAGGGAGGCAAGGCTGG
* * * * *
37261010 GGTCATCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACGTGCTCCACT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCACT
* *
37261075 GTAACCCAGGGAGGCAAGGTTGG
66 ATAACCCAGGGAGGCAAGGCTGG
* * *
37261098 TGTCTTCGATCTGCTTCACTGTCGGTGCAGAAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCACT
** *
37261163 GCAACCCAGGGAGGCAAGGCTAG
66 ATAACCCAGGGAGGCAAGGCTGG
* * *
37261186 TGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCAATTTTTAACTTGCTCCACT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCACT
** *
37261251 GCAACCTAGGGAGGCAAGGCTGG
66 ATAACCCAGGGAGGCAAGGCTGG
* *
37261274 TGTCTTCGATCTGCTTCACTGGCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCACT
** * ** *
37261339 GCAACGCAGGGAGGCAAGTTTAG
66 ATAACCCAGGGAGGCAAGGCTGG
** * * * * * *
37261362 TGTCTTCGATCTGCTTCGTTTTTGGTGTAGGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCACT
* * *
37261427 GTAACCCAGGAAGGCAAGGCTTG
66 ATAACCCAGGGAGGCAAGGCTGG
* * * * * *
37261450 TATCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTGCTCTGA-
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACATGCTC-CAC
** * *
37261514 TGCAACCCAGGAAGGTAAGGCTGG
65 TATAACCCAGGGAGGCAAGGCTGG
* * * *
37261538 TATCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCCAGATCTG
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTG
37261582 TTATCTTCAC
Statistics
Matches: 494, Mismatches: 77, Indels: 2
0.86 0.13 0.00
Matches are distributed among these distances:
88 494 1.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (88 bp):
TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCACT
ATAACCCAGGGAGGCAAGGCTGG
Found at i:37261178 original size:44 final size:44
Alignment explanation
Indices: 37261036--37261356 Score: 157
Period size: 44 Copynumber: 7.3 Consensus size: 44
37261026 CGCTGTCGGT
* * *
37261036 GCAGGAAGGCAAGATCTGCTATTTTTAACGTGCTCCACTGTAAC
1 GCAGGGAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAAC
* * * * * ** * * ***
37261080 CCAGGGAGGCAAGGT-TGGTGTCTTCGATCTGCTTCACTGTCGGT
1 GCAGGGAGGCAAGATCTGCTATTTTTAACCTGCTCCACTG-CAAC
** *
37261124 GCAGAAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAAC
1 GCAGGGAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAAC
* * * * ** * * * ***
37261168 CCAGGGAGGCAAG-GCTAG-TGTCTTCGATCTGCTTCGCTGTCGGT
1 GCAGGGAGGCAAGATCT-GCTATTTTTAACCTGCTCCACTG-CAAC
* * *
37261212 GCAGGAAGGCAAGATCTGCAATTTTTAACTTGCTCCACTGCAAC
1 GCAGGGAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAAC
* * * * ** * * ***
37261256 -CTAGGGAGGCAAG-GCTGGTGTCTTCGATCTGCTTCACTGGCGGT
1 GC-AGGGAGGCAAGATCTGCTATTTTTAACCTGCTCCACT-GCAAC
*
37261300 GCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAAC
1 GCAGGGAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAAC
37261344 GCAGGGAGGCAAG
1 GCAGGGAGGCAAG
37261357 TTTAGTGTCT
Statistics
Matches: 182, Mismatches: 85, Indels: 20
0.63 0.30 0.07
Matches are distributed among these distances:
43 49 0.27
44 85 0.47
45 48 0.26
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (44 bp):
GCAGGGAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAAC
Found at i:37261216 original size:176 final size:176
Alignment explanation
Indices: 37260922--37261581 Score: 836
Period size: 176 Copynumber: 3.8 Consensus size: 176
37260912 ATAAGACTAA
* * * * * * * **
37260922 TGTCTTCGATCTGCTTCACTGCCAGTACAGGAAGGCAAGATTTGCTATTTTCAACATACTCCATT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
**** * ** * * * * *
37260987 ATTGCTCAGGGAGATAGGGCTGGGGTCATCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATC
66 GCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATC
*
37261052 TGCTATTTTTAACGTGCTCCACTGTAACCCAGGGAGGCAAGGTTGG
131 TGCTATTTTTAACCTGCTCCACTGTAACCCAGGGAGGCAAGGTTGG
*
37261098 TGTCTTCGATCTGCTTCACTGTCGGTGCAGAAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
37261163 GCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATC
66 GCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATC
* * * * *
37261228 TGCAATTTTTAACTTGCTCCACTGCAACCTAGGGAGGCAAGGCTGG
131 TGCTATTTTTAACCTGCTCCACTGTAACCCAGGGAGGCAAGGTTGG
* *
37261274 TGTCTTCGATCTGCTTCACTGGCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
* ** * * * *
37261339 GCAACGCAGGGAGGCAAGTTTAGTGTCTTCGATCTGCTTCGTTTTTGGTGTAGGAAGGCAAGATC
66 GCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATC
* * *
37261404 TGCTATTTTTAACCTACTCCGCTGTAACCCAGGAAGGCAAGGCTT-G
131 TGCTATTTTTAACCTGCTCCACTGTAACCCAGGGAGGCAAGG-TTGG
* * * * * *
37261450 TATCTTCAATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTGCTCTGAT
1 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
* * * * * *
37261515 GCAACCCAGGAAGGTAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCCAGATC
66 GCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATC
37261580 TG
131 TG
37261582 TTATCTTCAC
Statistics
Matches: 417, Mismatches: 66, Indels: 2
0.86 0.14 0.00
Matches are distributed among these distances:
176 416 1.00
177 1 0.00
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (176 bp):
TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
GCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATC
TGCTATTTTTAACCTGCTCCACTGTAACCCAGGGAGGCAAGGTTGG
Found at i:37261399 original size:264 final size:264
Alignment explanation
Indices: 37261004--37261581 Score: 852
Period size: 264 Copynumber: 2.2 Consensus size: 264
37260994 AGGGAGATAG
* * * *
37261004 GGCTGGGGTCATCGATCTACTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACGTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* *
37261069 TCCACTGTAACCCAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGAAAGGC
66 TCCACTGCAACCCAGGGAGGCAAGGTTAGTGTCTTCGATCTGCTTCACTGTCGGTGCAGAAAGGC
* * * *
37261134 AAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTG
131 AAGATCTGCTATTTTTAACCTACTCCGCTGCAACCCAGGAAGGCAAGGCTAGTATCTTCAATCTG
* * * *
37261199 CTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCAATTTTTAACTTGCTC-CACTGCAACCTAGGGA
196 CTTCGCTGTCGGTGCAGGAAGGCAAGATCTACAATTTTTAACCTGCTCTCA-TGCAACCCAGGAA
37261263 GGCAA
260 GGCAA
* *
37261268 GGCTGGTGTCTTCGATCTGCTTCACTGGCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
* * ** * * * *
37261333 TCCACTGCAACGCAGGGAGGCAAGTTTAGTGTCTTCGATCTGCTTCGTTTTTGGTGTAGGAAGGC
66 TCCACTGCAACCCAGGGAGGCAAGGTTAGTGTCTTCGATCTGCTTCACTGTCGGTGCAGAAAGGC
* *
37261398 AAGATCTGCTATTTTTAACCTACTCCGCTGTAACCCAGGAAGGCAAGGCTTGTATCTTCAATCTG
131 AAGATCTGCTATTTTTAACCTACTCCGCTGCAACCCAGGAAGGCAAGGCTAGTATCTTCAATCTG
* *
37261463 CTTCGCTGTCGGTGCAGGAAGGCAAGATCTACTATTTTTAACCTGCTCTGATGCAACCCAGGAAG
196 CTTCGCTGTCGGTGCAGGAAGGCAAGATCTACAATTTTTAACCTGCTCTCATGCAACCCAGGAAG
*
37261528 GTAA
261 GCAA
* * *
37261532 GGCTGGTATCTTCGATCTGCTTCGCTGTCGGTGCAAGAAGGCCAGATCTG
1 GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
37261582 TTATCTTCAC
Statistics
Matches: 279, Mismatches: 34, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
264 278 1.00
265 1 0.00
ACGTcount: A:0.21, C:0.24, G:0.27, T:0.28
Consensus pattern (264 bp):
GGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGC
TCCACTGCAACCCAGGGAGGCAAGGTTAGTGTCTTCGATCTGCTTCACTGTCGGTGCAGAAAGGC
AAGATCTGCTATTTTTAACCTACTCCGCTGCAACCCAGGAAGGCAAGGCTAGTATCTTCAATCTG
CTTCGCTGTCGGTGCAGGAAGGCAAGATCTACAATTTTTAACCTGCTCTCATGCAACCCAGGAAG
GCAA
Found at i:37261438 original size:44 final size:44
Alignment explanation
Indices: 37261390--37261528 Score: 120
Period size: 44 Copynumber: 3.2 Consensus size: 44
37261380 TTTTTGGTGT
*
37261390 AGGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCTGTAACCC
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCC
* * * * * ****
37261434 AGGAAGGCAAG-GCTTG-TATCTTCAATCTGCTTCGCTGTCGGTGC
1 AGGAAGGCAAGATC-TGCTATTTTTAACCTGCTCCGCTGT-AACCC
* * * *
37261478 AGGAAGGCAAGATCTACTATTTTTAACCTGCTCTGATGCAACCC
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCC
37261522 AGGAAGG
1 AGGAAGG
37261529 TAAGGCTGGT
Statistics
Matches: 68, Mismatches: 23, Indels: 8
0.69 0.23 0.08
Matches are distributed among these distances:
43 18 0.26
44 34 0.50
45 16 0.24
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (44 bp):
AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCC
Found at i:37263813 original size:25 final size:26
Alignment explanation
Indices: 37263762--37263822 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
37263752 AAGAAAATCC
* **
37263762 AAAAGAATGAAAGAATAGTTATTTCA
1 AAAAGAATGAAAAAATAGTTAGCTCA
*
37263788 AAAAGAATGAAAAAATA-TTGGCTCA
1 AAAAGAATGAAAAAATAGTTAGCTCA
37263813 AAAATGAATG
1 AAAA-GAATG
37263823 CAAAGATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 9 0.30
26 21 0.70
ACGTcount: A:0.56, C:0.05, G:0.16, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAGTTAGCTCA
Done.