Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 121 of 182
Found at i:37267579 original size:23 final size:22
Alignment explanation
Indices: 37267531--37267579 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
37267521 AAAGGCATAC
*
37267531 ATAT-GAATTTACATATAAAAT
1 ATATAGAATTTACATACAAAAT
* *
37267552 TTATAGAATTTATATACAGAAAT
1 ATATAGAATTTACATACA-AAAT
37267575 ATATA
1 ATATA
37267580 ATGTATTTAT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 3 0.14
22 11 0.50
23 8 0.36
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (22 bp):
ATATAGAATTTACATACAAAAT
Found at i:37273785 original size:45 final size:45
Alignment explanation
Indices: 37273734--37273828 Score: 140
Period size: 45 Copynumber: 2.1 Consensus size: 45
37273724 TACTATGGGA
*
37273734 ACCGAACATCATTCATT-AGTAAGGTGGTTGCTATGTGCT-AATTCC
1 ACCGAACAACATTCATTGA-TAAGGTGGTTGCTATGTGCTGAA-TCC
*
37273779 ACCGAACAACATTGATTGATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACAACATTCATTGATAAGGTGGTTGCTATGTGCTGAATCC
37273824 ACCGA
1 ACCGA
37273829 GTATCTGTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
45 43 0.93
46 3 0.07
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.29
Consensus pattern (45 bp):
ACCGAACAACATTCATTGATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:37284054 original size:16 final size:16
Alignment explanation
Indices: 37284033--37284080 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
37284023 TACTTTCACA
*
37284033 CTAAATTGTGTTCCAT
1 CTAAATAGTGTTCCAT
37284049 CTAAATAGTGTTCCAT
1 CTAAATAGTGTTCCAT
37284065 CTAAATAGTGTTCCAT
1 CTAAATAGTGTTCCAT
37284081 AGACACAATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.29, C:0.19, G:0.12, T:0.40
Consensus pattern (16 bp):
CTAAATAGTGTTCCAT
Found at i:37289941 original size:54 final size:54
Alignment explanation
Indices: 37289834--37289940 Score: 162
Period size: 53 Copynumber: 2.0 Consensus size: 54
37289824 AGAATTCCTT
* *
37289834 TTCAAATTTTGATTATTTTAGTTTACCCAAATTATAAACGGTAATTAAAAAAAA
1 TTCAAATTTTGAATATTTTAGTTTACCCAAATTATAAACCGTAATTAAAAAAAA
* * *
37289888 TTCAAATTTT-AATATTTTGGTTTGCCCAAATTATAAACCGTAGTTAAAAAAAA
1 TTCAAATTTTGAATATTTTAGTTTACCCAAATTATAAACCGTAATTAAAAAAAA
37289941 AAGACCCCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 38 0.79
54 10 0.21
ACGTcount: A:0.43, C:0.10, G:0.08, T:0.38
Consensus pattern (54 bp):
TTCAAATTTTGAATATTTTAGTTTACCCAAATTATAAACCGTAATTAAAAAAAA
Found at i:37290107 original size:33 final size:33
Alignment explanation
Indices: 37290065--37290131 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
37290055 ATTTCACTTG
37290065 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
1 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
37290098 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
1 ATTTCCTCTGACTATTAATTGAAAATCTATGGA
37290131 A
1 A
37290132 GATTAATGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.39
Consensus pattern (33 bp):
ATTTCCTCTGACTATTAATTGAAAATCTATGGA
Found at i:37297602 original size:19 final size:19
Alignment explanation
Indices: 37297578--37297631 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
37297568 AATCTTCAAG
37297578 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
37297597 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
37297616 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
37297632 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:37297607 original size:36 final size:36
Alignment explanation
Indices: 37297567--37297638 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
37297557 TATGGAAACA
37297567 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
37297603 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
37297639 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:37298677 original size:293 final size:292
Alignment explanation
Indices: 37298114--37298700 Score: 1086
Period size: 293 Copynumber: 2.0 Consensus size: 292
37298104 TATCATTATT
37298114 ATTATTATTATTTATTTTATTCATGCGCATGCATCGTTTTATGTAATATATATTGTTTTATATAT
1 ATTATTATTATTTATTTTATTCATGCGCATGCATCGTTTTATGTAATATATATTGTTTTATATAT
*
37298179 AGTATACGTATGCTTATATATATTTTATACATATGTTTTTATTTTTATTTTACTTCCTAACTTTT
66 AGTATACGTATGCTTATATATATTTTATACACATGTTTTTATTTTTATTTTACTTCCTAACTTTT
37298244 ATATACATATATATACTTTTATATTTAGTTTCAATTTTTTTTTACTTTTGTATATATGTACAAGT
131 ATATACATATATATACTTTTATATTTAGTTTCAATTTTTTTTTACTTTTGTATATATGTACAAGT
37298309 ATGTATTTATATATTTTTCTAATGAATATTTATATATATATATACGCACATGTCTATGTTTTTTA
196 ATGTATTTATATATTTTTCTAATGAATATTTATATATATATATACGCACATGTCTATGTTTTTTA
37298374 TTTGCTTAAATACAAACTTATATTTTCAACAC
261 TTTGCTTAAATACAAACTTATATTTTCAACAC
* * *
37298406 ATTATTCTTATTT-TTTATATTCATGTGCATGCATCGTTTTTATGTAATATCTATTGTTTTATAT
1 ATTATTATTATTTATTT-TATTCATGCGCATGCATCG-TTTTATGTAATATATATTGTTTTATAT
* * *
37298470 ATAGTATACGTATGCTTATATATATTTTATACACATGTTTTTGTTTTTATTTTAGTTCCTTACTT
64 ATAGTATACGTATGCTTATATATATTTTATACACATGTTTTTATTTTTATTTTACTTCCTAACTT
37298535 TTATATACATATATATACTTTTATATTTAGTTTCAATTTTTTTTTACTTTTGTATATATGTACAA
129 TTATATACATATATATACTTTTATATTTAGTTTCAATTTTTTTTTACTTTTGTATATATGTACAA
37298600 GTATGTATTTATATATTTTTCTAATGAATATTTATATATATATATACGCACATGTCTATGTTTTT
194 GTATGTATTTATATATTTTTCTAATGAATATTTATATATATATATACGCACATGTCTATGTTTTT
37298665 TATTTGCTTAAATACAAACTTATATTTTCAACAC
259 TATTTGCTTAAATACAAACTTATATTTTCAACAC
37298699 AT
1 AT
37298701 ATGTTATAAT
Statistics
Matches: 286, Mismatches: 7, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
291 3 0.01
292 30 0.10
293 253 0.88
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.54
Consensus pattern (292 bp):
ATTATTATTATTTATTTTATTCATGCGCATGCATCGTTTTATGTAATATATATTGTTTTATATAT
AGTATACGTATGCTTATATATATTTTATACACATGTTTTTATTTTTATTTTACTTCCTAACTTTT
ATATACATATATATACTTTTATATTTAGTTTCAATTTTTTTTTACTTTTGTATATATGTACAAGT
ATGTATTTATATATTTTTCTAATGAATATTTATATATATATATACGCACATGTCTATGTTTTTTA
TTTGCTTAAATACAAACTTATATTTTCAACAC
Found at i:37301214 original size:13 final size:13
Alignment explanation
Indices: 37301196--37301222 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37301186 AAAAGTTTAT
37301196 TACCAAATCTATA
1 TACCAAATCTATA
37301209 TACCAAATCTATA
1 TACCAAATCTATA
37301222 T
1 T
37301223 TTTACCCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (13 bp):
TACCAAATCTATA
Found at i:37302400 original size:15 final size:15
Alignment explanation
Indices: 37302382--37302413 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
37302372 TAACGGTTTA
37302382 TATTAATGATTTCGG
1 TATTAATGATTTCGG
37302397 TATTAATGATTTCGG
1 TATTAATGATTTCGG
37302412 TA
1 TA
37302414 AACTATATAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.06, G:0.19, T:0.47
Consensus pattern (15 bp):
TATTAATGATTTCGG
Found at i:37310158 original size:30 final size:30
Alignment explanation
Indices: 37310124--37310212 Score: 97
Period size: 30 Copynumber: 3.0 Consensus size: 30
37310114 CAGTAGCAGT
*
37310124 GTGTGGGTCATAGCCCAATATAATAACAGA
1 GTGTGGGCCATAGCCCAATATAATAACAGA
* * * *
37310154 GTGTGGGCCTTAGCCTAATATAGTAATAGA
1 GTGTGGGCCATAGCCCAATATAATAACAGA
* * * *
37310184 GTGTGGGCCTTAGCCTAATACAGTAACAG
1 GTGTGGGCCATAGCCCAATATAATAACAG
37310213 TGCAAATGCA
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (30 bp):
GTGTGGGCCATAGCCCAATATAATAACAGA
Found at i:37310349 original size:26 final size:26
Alignment explanation
Indices: 37310320--37310422 Score: 125
Period size: 26 Copynumber: 4.0 Consensus size: 26
37310310 ACACCAATAT
* *
37310320 CGCAGCAAAGCTGCCAGTAATAGTAA
1 CGCAGCAAAGCTACCAGTAACAGTAA
37310346 CGCAGCAAAGCTACCAGTAACAGTAA
1 CGCAGCAAAGCTACCAGTAACAGTAA
* * * * *
37310372 TGTACCAGAGCTACCAGTATCAGTAA
1 CGCAGCAAAGCTACCAGTAACAGTAA
* *
37310398 CACAGCAAAGCTGCCAGTAACAGTA
1 CGCAGCAAAGCTACCAGTAACAGTA
37310423 TATGTGGCAA
Statistics
Matches: 63, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.39, C:0.25, G:0.20, T:0.16
Consensus pattern (26 bp):
CGCAGCAAAGCTACCAGTAACAGTAA
Found at i:37310415 original size:52 final size:53
Alignment explanation
Indices: 37310328--37310427 Score: 150
Period size: 52 Copynumber: 1.9 Consensus size: 53
37310318 ATCGCAGCAA
* *
37310328 AGCTGCCAGTAATAGTAACGCAGCAAAGCTACCAGTAACAGTA-ATGTACCAG
1 AGCTACCAGTAATAGTAACACAGCAAAGCTACCAGTAACAGTATATGTACCAG
*
37310380 AGCTACCAGT-ATCAGTAACACAGCAAAGCTGCCAGTAACAGTATATGT
1 AGCTACCAGTAAT-AGTAACACAGCAAAGCTACCAGTAACAGTATATGT
37310428 GGCAAAGCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
51 2 0.05
52 37 0.86
53 4 0.09
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.19
Consensus pattern (53 bp):
AGCTACCAGTAATAGTAACACAGCAAAGCTACCAGTAACAGTATATGTACCAG
Found at i:37310802 original size:27 final size:27
Alignment explanation
Indices: 37310658--37310802 Score: 184
Period size: 27 Copynumber: 5.4 Consensus size: 27
37310648 TATAAAAGTT
* *
37310658 ATTTTACCCTTCAGGGGTATTTCAGTC
1 ATTTTACCCATCAAGGGTATTTCAGTC
* ** *
37310685 ATTTTACCCTTTGAGGGTATTTCAGTT
1 ATTTTACCCATCAAGGGTATTTCAGTC
* * *
37310712 ATTTTACCCTTCGAGGGTATTTCAATC
1 ATTTTACCCATCAAGGGTATTTCAGTC
37310739 ATTTTACCCATCAAGGGTATTTCCA-TC
1 ATTTTACCCATCAAGGGTATTT-CAGTC
*
37310766 ATTTTACCCATCAAGGGTATTTTAGTC
1 ATTTTACCCATCAAGGGTATTTCAGTC
37310793 ATTTTACCCA
1 ATTTTACCCA
37310803 AGAATCGCAT
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
26 1 0.01
27 103 0.97
28 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.14, T:0.41
Consensus pattern (27 bp):
ATTTTACCCATCAAGGGTATTTCAGTC
Found at i:37318236 original size:25 final size:24
Alignment explanation
Indices: 37318182--37318240 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
37318172 TGTTATGGTC
* *
37318182 TTATGTTATGTATGACTGATTTGC
1 TTATGATATGTATGACTGATTTGA
37318206 TCTATGATATGTATGACT-ATGATTGA
1 T-TATGATATGTATGACTGAT--TTGA
37318232 TTATGATAT
1 TTATGATAT
37318241 TTTGCATACA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 3 0.10
25 23 0.77
26 4 0.13
ACGTcount: A:0.27, C:0.07, G:0.19, T:0.47
Consensus pattern (24 bp):
TTATGATATGTATGACTGATTTGA
Found at i:37320085 original size:17 final size:17
Alignment explanation
Indices: 37320063--37320104 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
37320053 TTTATATCTA
37320063 TTAATTGAT-ATTTAAAT
1 TTAATT-ATAATTTAAAT
*
37320080 TTAATTATAATTTAATT
1 TTAATTATAATTTAAAT
*
37320097 TTAGTTAT
1 TTAATTAT
37320105 TAAACGTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (17 bp):
TTAATTATAATTTAAAT
Found at i:37320759 original size:19 final size:20
Alignment explanation
Indices: 37320710--37320758 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
37320700 AAAAACCCTT
37320710 AAAACTTTTTATTTTCCCCC
1 AAAACTTTTTATTTTCCCCC
37320730 AAAACTTTTTATTTTCCCCC
1 AAAACTTTTTATTTTCCCCC
37320750 AAAACTTTT
1 AAAACTTTT
37320759 ACTCTCTTCC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.29, C:0.27, G:0.00, T:0.45
Consensus pattern (20 bp):
AAAACTTTTTATTTTCCCCC
Found at i:37320759 original size:97 final size:96
Alignment explanation
Indices: 37320642--37320820 Score: 229
Period size: 96 Copynumber: 1.9 Consensus size: 96
37320632 ATTTTTTGAA
* * * ***
37320642 TATTTTCCCTTCAAAATTTTACTCTCCCATT-TACTTTCCTTC-AAAATTTTACTCTGTTAAAAA
1 TATTTTCCCTCCAAAATTTTACTCT--C-TTCCACTTTCCTACTAAAATTTTACTCCCCTAAAAA
**
37320705 CCCTTAAAACTTTTTATTTTCCCCCAAAACTTTT
63 CCCCCAAAACTTTTTATTTTCCCCCAAAACTTTT
37320739 TATTTTCCC-CCAAAACTTTTACTCTCTTCCACTTTCCTACTAAAATTTTACTCCCCTAAAAACC
1 TATTTTCCCTCCAAAA-TTTTACTCTCTTCCACTTTCCTACTAAAATTTTACTCCCCTAAAAACC
37320803 CCCAAAACTTTTTATTTT
65 CCCAAAACTTTTTATTTT
37320821 TTCCCTTATA
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
94 2 0.03
95 10 0.14
96 41 0.58
97 18 0.25
ACGTcount: A:0.28, C:0.28, G:0.01, T:0.43
Consensus pattern (96 bp):
TATTTTCCCTCCAAAATTTTACTCTCTTCCACTTTCCTACTAAAATTTTACTCCCCTAAAAACCC
CCAAAACTTTTTATTTTCCCCCAAAACTTTT
Found at i:37323553 original size:89 final size:90
Alignment explanation
Indices: 37323412--37323656 Score: 274
Period size: 89 Copynumber: 2.7 Consensus size: 90
37323402 TGTAAAAAAT
* * *
37323412 CTTCAAAC-ATTT-AAAAAAAAT--AATTAAGCCCCTATTTTCTTTTACATTCAATTGGGTACTT
1 CTTCAAACTTTTTAAAAAAAAATGCAATTAAGCCCCTATTTT-TTTTTCACTCAATTGGGTACTT
37323473 GAACTTTC-AAACTACATCAAAAAGA-
65 GAACTTTCGAAA-TACATCAAAAAGAC
37323498 CTCTC-AA-TTTTTAAAAAAAAATGCAATTAAGCCCCTACTTTTTTTTTCACTCAATTGGGTACT
1 CT-TCAAACTTTTTAAAAAAAAATGCAATTAAGCCCCTA-TTTTTTTTTCACTCAATTGGGTACT
* *
37323561 TGAACTTTCGAAATGCATCAAAAAGTC
64 TGAACTTTCGAAATACATCAAAAAGAC
** * * *
37323588 CTTCAAACTTTTTTCAGAAAAA-GCAATTAAGCCCTTAATTTTTTTTTTGCACTCAATTGGATAC
1 CTTCAAACTTTTTAAAAAAAAATGCAATTAAGCCCCT-A-TTTTTTTTT-CACTCAATTGGGTAC
37323652 TTGAA
63 TTGAA
37323657 ATATTAAATG
Statistics
Matches: 136, Mismatches: 11, Indels: 18
0.82 0.07 0.11
Matches are distributed among these distances:
86 7 0.05
87 11 0.08
89 54 0.40
90 24 0.18
91 21 0.15
92 19 0.14
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (90 bp):
CTTCAAACTTTTTAAAAAAAAATGCAATTAAGCCCCTATTTTTTTTTCACTCAATTGGGTACTTG
AACTTTCGAAATACATCAAAAAGAC
Found at i:37323867 original size:19 final size:19
Alignment explanation
Indices: 37323761--37323887 Score: 120
Period size: 19 Copynumber: 6.7 Consensus size: 19
37323751 GACATGTGAC
37323761 AAAAAATTATAAAAA--AT
1 AAAAAATTATAAAAATTAT
* *
37323778 AAAAAATCAATAAAATTTAT
1 AAAAAAT-TATAAAAATTAT
*
37323798 AAAAAA-TAT-TAAA-TAT
1 AAAAAATTATAAAAATTAT
*
37323814 AAATAAAAATATAAAAATTAT
1 -AA-AAAATTATAAAAATTAT
*
37323835 TAAAAATTATTAAAAATTAT
1 AAAAAATTA-TAAAAATTAT
*
37323855 AAAAAATTATAAAAATCAT
1 AAAAAATTATAAAAATTAT
*
37323874 AAAAAAATATAAAA
1 AAAAAATTATAAAA
37323888 TGCATAAAAA
Statistics
Matches: 90, Mismatches: 11, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
16 3 0.03
17 11 0.12
18 12 0.13
19 31 0.34
20 30 0.33
21 3 0.03
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAAATTATAAAAATTAT
Found at i:37323869 original size:9 final size:9
Alignment explanation
Indices: 37323762--37323878 Score: 103
Period size: 10 Copynumber: 12.6 Consensus size: 9
37323752 ACATGTGACA
37323762 AAAAATTAT
1 AAAAATTAT
*
37323771 AAAAAATA-
1 AAAAATTAT
*
37323779 AAAAATCAAT
1 AAAAAT-TAT
*
37323789 AAAATTTAT
1 AAAAATTAT
*
37323798 AAAAAATATT
1 AAAAATTA-T
* *
37323808 AAATATAAAT
1 AAAAAT-TAT
37323818 AAAAA-TAT
1 AAAAATTAT
37323826 AAAAATTATT
1 AAAAATTA-T
37323836 AAAAATTATT
1 AAAAATTA-T
37323846 AAAAATTAT
1 AAAAATTAT
37323855 AAAAAATTAT
1 -AAAAATTAT
*
37323865 AAAAATCAT
1 AAAAATTAT
37323874 AAAAA
1 AAAAA
37323879 AATATAAAAT
Statistics
Matches: 88, Mismatches: 13, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
8 12 0.14
9 32 0.36
10 43 0.49
11 1 0.01
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (9 bp):
AAAAATTAT
Found at i:37323897 original size:10 final size:9
Alignment explanation
Indices: 37323816--37323897 Score: 60
Period size: 10 Copynumber: 8.8 Consensus size: 9
37323806 TTAAATATAA
37323816 ATAAAAAT-
1 ATAAAAATC
*
37323824 ATAAAAATT
1 ATAAAAATC
*
37323833 ATTAAAAATT
1 A-TAAAAATC
*
37323843 ATTAAAAATT
1 A-TAAAAATC
*
37323853 ATAAAAAATT
1 AT-AAAAATC
37323863 ATAAAAATC
1 ATAAAAATC
*
37323872 ATAAAAA-A
1 ATAAAAATC
37323880 ATATAAAATGC
1 ATA-AAAAT-C
37323891 ATAAAAA
1 ATAAAAA
37323898 AAATCCTTGA
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
8 11 0.17
9 19 0.29
10 32 0.49
11 3 0.05
ACGTcount: A:0.68, C:0.02, G:0.01, T:0.28
Consensus pattern (9 bp):
ATAAAAATC
Found at i:37323901 original size:20 final size:19
Alignment explanation
Indices: 37323818--37323899 Score: 94
Period size: 19 Copynumber: 4.3 Consensus size: 19
37323808 AAATATAAAT
* *
37323818 AAAAATATAAAAATTATTA
1 AAAAATATAAAAATCATAA
* *
37323837 AAAATTATTAAAAATTATAA
1 AAAAATA-TAAAAATCATAA
*
37323857 AAAATTATAAAAATCATAA
1 AAAAATATAAAAATCATAA
37323876 AAAAATAT-AAAATGCATAA
1 AAAAATATAAAAAT-CATAA
37323895 AAAAA
1 AAAAA
37323900 ATCCTTGACG
Statistics
Matches: 57, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
18 5 0.09
19 34 0.60
20 18 0.32
ACGTcount: A:0.70, C:0.02, G:0.01, T:0.27
Consensus pattern (19 bp):
AAAAATATAAAAATCATAA
Found at i:37324104 original size:10 final size:9
Alignment explanation
Indices: 37324071--37324210 Score: 59
Period size: 9 Copynumber: 14.8 Consensus size: 9
37324061 AAAACGATAA
37324071 TTTTTATAT
1 TTTTTATAT
37324080 TTTTTATGA-
1 TTTTTAT-AT
*
37324089 ATTTTATAT
1 TTTTTATAT
*
37324098 TTCTTTACAT
1 TT-TTTATAT
37324108 TTTTTATAAT
1 TTTTTAT-AT
*
37324118 TTTCTTACGAT
1 TTT-TTA-TAT
* * *
37324129 CTTATA-AA
1 TTTTTATAT
37324137 TTTTTATATT
1 TTTTTATA-T
*
37324147 TTTTCTAAAT
1 TTTT-TATAT
*
37324157 TTCTATATAT
1 TT-TTTATAT
* *
37324167 TTTATATTT
1 TTTTTATAT
*
37324176 TTTTTATAA
1 TTTTTATAT
* *
37324185 ATTTTAAAT
1 TTTTTATAT
*
37324194 ATTTTTATAG
1 -TTTTTATAT
37324204 TTTTTAT
1 TTTTTAT
37324211 TAAAATTTAA
Statistics
Matches: 96, Mismatches: 24, Indels: 22
0.68 0.17 0.15
Matches are distributed among these distances:
8 6 0.06
9 44 0.46
10 35 0.36
11 11 0.11
ACGTcount: A:0.28, C:0.05, G:0.02, T:0.65
Consensus pattern (9 bp):
TTTTTATAT
Found at i:37324134 original size:38 final size:39
Alignment explanation
Indices: 37324071--37324160 Score: 87
Period size: 38 Copynumber: 2.4 Consensus size: 39
37324061 AAAACGATAA
* * ** *
37324071 TTTTTAT-ATTTT-TTATGAATTTTATATTTCTTTACAT
1 TTTTTATAATTTTCTTACGAATCTTATAAATTTTTACAT
*
37324108 TTTTTATAATTTTCTTACG-ATCTTATAAATTTTTATAT
1 TTTTTATAATTTTCTTACGAATCTTATAAATTTTTACAT
* *
37324146 TTTTTCTAAATTTCT
1 TTTTTATAATTTTCT
37324161 ATATATTTTA
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
37 7 0.16
38 32 0.74
39 4 0.09
ACGTcount: A:0.26, C:0.08, G:0.02, T:0.64
Consensus pattern (39 bp):
TTTTTATAATTTTCTTACGAATCTTATAAATTTTTACAT
Found at i:37324163 original size:29 final size:28
Alignment explanation
Indices: 37324130--37324231 Score: 100
Period size: 29 Copynumber: 3.5 Consensus size: 28
37324120 TCTTACGATC
*
37324130 TTATAAATTTTTATATTTTTTCTAAATT
1 TTATAAATTTTTATATTTTTTATAAATT
* *
37324158 TCTATATATTTTATATTTTTTTTATAAATT
1 T-TATAAATTTT-TATATTTTTTATAAATT
* *
37324188 TTA-AATATTTTTATAGTTTTTATTAAAAT
1 TTATAA-ATTTTTATATTTTTTA-TAAATT
37324217 TTA-ATAATTTTTATA
1 TTATA-AATTTTTATA
37324232 ACATTTACTA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
28 11 0.18
29 34 0.55
30 17 0.27
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (28 bp):
TTATAAATTTTTATATTTTTTATAAATT
Found at i:37324179 original size:30 final size:29
Alignment explanation
Indices: 37324138--37324227 Score: 89
Period size: 30 Copynumber: 3.1 Consensus size: 29
37324128 TCTTATAAAT
*
37324138 TTTTATA-T-TTTTTCTAAATTTCTATATA
1 TTTTATATTTTTTTTATAAATTT-TATATA
*
37324166 TTTTATATTTTTTTTATAAATTTTAAATA
1 TTTTATATTTTTTTTATAAATTTTATATA
* *
37324195 TTTTTATAGTTTTTATTA-AAATTTAATA-A
1 -TTTTATA-TTTTTTTTATAAATTTTATATA
37324224 TTTT
1 TTTT
37324228 TATAACATTT
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
28 11 0.21
29 7 0.13
30 27 0.51
31 8 0.15
ACGTcount: A:0.32, C:0.02, G:0.01, T:0.64
Consensus pattern (29 bp):
TTTTATATTTTTTTTATAAATTTTATATA
Found at i:37324179 original size:38 final size:38
Alignment explanation
Indices: 37324089--37324179 Score: 94
Period size: 38 Copynumber: 2.4 Consensus size: 38
37324079 TTTTTTATGA
* *
37324089 ATTTTATATTTCTTTACATTTTTTATAATTTTCTTACG
1 ATTTTATATTTTTTTACATTTTTTATAAATTTCTTACG
* ** * * *
37324127 ATCTTATAAATTTTTATATTTTTTCTAAATTTCTATA-T
1 ATTTTATATTTTTTTACATTTTTTATAAATTTCT-TACG
37324165 ATTTTATATTTTTTT
1 ATTTTATATTTTTTT
37324180 TATAAATTTT
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
38 39 0.95
39 2 0.05
ACGTcount: A:0.26, C:0.08, G:0.01, T:0.65
Consensus pattern (38 bp):
ATTTTATATTTTTTTACATTTTTTATAAATTTCTTACG
Found at i:37324198 original size:20 final size:20
Alignment explanation
Indices: 37324160--37324199 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
37324150 TCTAAATTTC
* * *
37324160 TATATATTTTATATTTTTTT
1 TATAAATTTTAAATATTTTT
37324180 TATAAATTTTAAATATTTTT
1 TATAAATTTTAAATATTTTT
37324200 ATAGTTTTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TATAAATTTTAAATATTTTT
Found at i:37324219 original size:19 final size:19
Alignment explanation
Indices: 37324197--37324250 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
37324187 TTTAAATATT
*
37324197 TTTATAGTTTTTATTAAAA
1 TTTATAATTTTTATTAAAA
*
37324216 TTTAATAATTTTTA-TAACA
1 TTT-ATAATTTTTATTAAAA
37324235 TTTACTAATTTTTATT
1 TTTA-TAATTTTTATT
37324251 TTTTCTCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
18 1 0.03
19 19 0.63
20 10 0.33
ACGTcount: A:0.35, C:0.04, G:0.02, T:0.59
Consensus pattern (19 bp):
TTTATAATTTTTATTAAAA
Found at i:37324580 original size:17 final size:17
Alignment explanation
Indices: 37324555--37324622 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
37324545 AGAGGAAAGA
37324555 ATGAG-GAAGAAAGAGC
1 ATGAGAGAAGAAAGAGC
*
37324571 ATGAGAGAAGAAAGAGAA
1 ATGAGAGAAGAAAGAG-C
** *
37324589 AGTTTTGAGAA-ACAGAGC
1 A--TGAGAGAAGAAAGAGC
37324607 ATGAGAGAAGAAAGAG
1 ATGAGAGAAGAAAGAG
37324623 AAAGTTTTGA
Statistics
Matches: 39, Mismatches: 8, Indels: 9
0.70 0.14 0.16
Matches are distributed among these distances:
16 11 0.28
17 15 0.38
18 2 0.05
19 5 0.13
20 6 0.15
ACGTcount: A:0.51, C:0.04, G:0.34, T:0.10
Consensus pattern (17 bp):
ATGAGAGAAGAAAGAGC
Found at i:37324610 original size:36 final size:36
Alignment explanation
Indices: 37324566--37324637 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
37324556 TGAGGAAGAA
37324566 AGAGCATGAGAGAAGAAAGAGAAAGTTTTGAGAAAC
1 AGAGCATGAGAGAAGAAAGAGAAAGTTTTGAGAAAC
37324602 AGAGCATGAGAGAAGAAAGAGAAAGTTTTGAGAAAC
1 AGAGCATGAGAGAAGAAAGAGAAAGTTTTGAGAAAC
37324638 TTGTCTTGTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.50, C:0.06, G:0.31, T:0.14
Consensus pattern (36 bp):
AGAGCATGAGAGAAGAAAGAGAAAGTTTTGAGAAAC
Found at i:37326138 original size:38 final size:38
Alignment explanation
Indices: 37326096--37326172 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
37326086 ATTCCCTAAC
37326096 CCACACCTTCACATCCTTGGACAACCTTTTCCAATAAA
1 CCACACCTTCACATCCTTGGACAACCTTTTCCAATAAA
37326134 CCACACCTTCACATCCTTGGACAACCTTTTCCAATAAA
1 CCACACCTTCACATCCTTGGACAACCTTTTCCAATAAA
37326172 C
1 C
37326173 TAACCCTGAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.31, C:0.38, G:0.05, T:0.26
Consensus pattern (38 bp):
CCACACCTTCACATCCTTGGACAACCTTTTCCAATAAA
Found at i:37331228 original size:41 final size:40
Alignment explanation
Indices: 37331163--37331419 Score: 259
Period size: 41 Copynumber: 6.3 Consensus size: 40
37331153 ATTTTTAAAC
* *
37331163 CTTTAGCGGCGTTTTGGTGTAAGCGCCGCTAATGTTCCGAT
1 CTTTAGCGGCGTTTTTGT-TAAGCGCCGCTAATGCTCCGAT
* *
37331204 CTTTAGCGGCGTTTTTGTGAAAGCGCCGCTAATGCCCCGAT
1 CTTTAGCGGCGTTTTTGT-TAAGCGCCGCTAATGCTCCGAT
* * * * *
37331245 CTTTAGCAGCATTTTTGTCTATGCGCCACTAATTCT-CGAAT
1 CTTTAGCGGCGTTTTTGT-TAAGCGCCGCTAATGCTCCG-AT
* * *
37331286 CTTTAGCGGCGTTTTTGTT--GTGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTGTTAAGCGCCGCTAATGCTCCGAT
* * * *
37331324 CTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATACTCGGGT
1 CTTTAGCGGCGTTTTTGT-TAAGCGCCGCTAATGCTCCGAT
* * * *
37331365 CTTTAGCGGCGTTTTTATACAAGCGCCGCTAATTCTCGGAT
1 CTTTAGCGGCGTTTTTGT-TAAGCGCCGCTAATGCTCCGAT
37331406 CTTTAGCGGCGTTT
1 CTTTAGCGGCGTTT
37331420 CTAACTGAGC
Statistics
Matches: 184, Mismatches: 27, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
38 30 0.16
39 2 0.01
40 3 0.02
41 149 0.81
ACGTcount: A:0.15, C:0.24, G:0.25, T:0.36
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTGTTAAGCGCCGCTAATGCTCCGAT
Found at i:37331400 original size:120 final size:122
Alignment explanation
Indices: 37331163--37331419 Score: 313
Period size: 120 Copynumber: 2.1 Consensus size: 122
37331153 ATTTTTAAAC
* *
37331163 CTTTAGCGGCGTTTTGGTGTAAGCGCCGCTAATGTTCCGATCTTTAGCGGCGTTTTTGTGAAAGC
1 CTTTAGCGGCGTTTT-GTGTAAGCGCCGCTAATGCTCCGATCTTTAGCGGCGTTTTTGTCAAAGC
* * *
37331228 GCCGCTAATGCCCCGATCTTTAGCAGCATTTTTGTCTATGCGCCACTAATTCTCGAAT
65 GCCGCTAATACCCCGATCTTTAGCAGCATTTTTATCTAAGCGCCACTAATTCTCGAAT
* * * * * *
37331286 CTTTAGCGGCGTTTT-TGT-TGTGCCGCTAATGCTCGGGTCTTTAGCGGCGTTTTTGTCTATGCG
1 CTTTAGCGGCGTTTTGTGTAAGCGCCGCTAATGCTCCGATCTTTAGCGGCGTTTTTGTCAAAGCG
* * * * * * *
37331349 CCGCTAATACTCGGGTCTTTAGCGGCGTTTTTATAC-AAGCGCCGCTAATTCTCGGAT
66 CCGCTAATACCCCGATCTTTAGCAGCATTTTTAT-CTAAGCGCCACTAATTCTCGAAT
37331406 CTTTAGCGGCGTTT
1 CTTTAGCGGCGTTT
37331420 CTAACTGAGC
Statistics
Matches: 115, Mismatches: 18, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
120 96 0.83
121 4 0.03
123 15 0.13
ACGTcount: A:0.15, C:0.24, G:0.25, T:0.36
Consensus pattern (122 bp):
CTTTAGCGGCGTTTTGTGTAAGCGCCGCTAATGCTCCGATCTTTAGCGGCGTTTTTGTCAAAGCG
CCGCTAATACCCCGATCTTTAGCAGCATTTTTATCTAAGCGCCACTAATTCTCGAAT
Found at i:37331438 original size:41 final size:41
Alignment explanation
Indices: 37331163--37331479 Score: 221
Period size: 41 Copynumber: 7.8 Consensus size: 41
37331153 ATTTTTAAAC
**** *
37331163 CTTTAGCGGCGTTTTGGTGTAAGCGCCGCTAATGT-TCCGAT
1 CTTTAGCGGCGTTTTTAACTAAGCGCCGCTAAT-TCTCGGAT
**** * * *
37331204 CTTTAGCGGCGTTTTTGTGAAAGCGCCGCTAATGCCCCGAT
1 CTTTAGCGGCGTTTTTAACTAAGCGCCGCTAATTCTCGGAT
* * ** * * *
37331245 CTTTAGCAGCATTTTTGTCTATGCGCCACTAATTCTCGAAT
1 CTTTAGCGGCGTTTTTAACTAAGCGCCGCTAATTCTCGGAT
* * * * *
37331286 CTTTAGCGGCGTTTTT--GT-TGTGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTAACTAAGCGCCGCTAATTCTCGGAT
** * * *
37331324 CTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATACTCGGGT
1 CTTTAGCGGCGTTTTTAACTAAGCGCCGCTAATTCTCGGAT
37331365 CTTTAGCGGCGTTTTTATAC-AAGCGCCGCTAATTCTCGGAT
1 CTTTAGCGGCGTTTTTA-ACTAAGCGCCGCTAATTCTCGGAT
* * * * * **
37331406 CTTTAGCGGCGTTTCTAACTGAGCGTCACTAATTCGCTTAT
1 CTTTAGCGGCGTTTTTAACTAAGCGCCGCTAATTCTCGGAT
* * * *
37331447 CTTTAGCGGTGTTTGTATCTAAGCGTCGCTAAT
1 CTTTAGCGGCGTTTTTAACTAAGCGCCGCTAAT
37331480 GTATTTACCT
Statistics
Matches: 228, Mismatches: 42, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
38 31 0.14
39 1 0.00
40 3 0.01
41 192 0.84
42 1 0.00
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTAACTAAGCGCCGCTAATTCTCGGAT
Found at i:37331438 original size:161 final size:161
Alignment explanation
Indices: 37331163--37331460 Score: 375
Period size: 161 Copynumber: 1.9 Consensus size: 161
37331153 ATTTTTAAAC
* ** *
37331163 CTTTAGCGGCGTTTTGGTGTAAGCGCCGCTAATGTTCCGATCTTTAGCGGCGTTTTTGTGAAAGC
1 CTTTAGCGGCGTTTTGGTCTAAGCGCCGCTAATACTCCGATCTTTAGCGGCGTTTTTATGAAAGC
* ** *
37331228 GCCGCTAATGCCCCGATCTTTAGCAGCATTTTTGTCTATGCGCCACTAATTCTCGAATCTTTAGC
66 GCCGCTAATGCCCCGATCTTTAGCAGCATTTCTAACTATGCGCCACTAATTCGCGAATCTTTAGC
37331293 GGCGTTTTTGTTGTGCCGCTAATGCTCGGGT
131 GGCGTTTTTGTTGTGCCGCTAATGCTCGGGT
* * * *
37331324 CTTTAGCGGCGTTTTTGTCTATGCGCCGCTAATACTCGGGTCTTTAGCGGCGTTTTTAT-ACAAG
1 CTTTAGCGGCGTTTTGGTCTAAGCGCCGCTAATACTCCGATCTTTAGCGGCGTTTTTATGA-AAG
* * * * * * **
37331388 CGCCGCTAATTCTCGGATCTTTAGCGGCGTTTCTAACTGA-GCGTCACTAATTCGCTTATCTTTA
65 CGCCGCTAATGCCCCGATCTTTAGCAGCATTTCTAACT-ATGCGCCACTAATTCGCGAATCTTTA
*
37331452 GCGGTGTTT
129 GCGGCGTTT
37331461 GTATCTAAGC
Statistics
Matches: 114, Mismatches: 21, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
160 1 0.01
161 112 0.98
162 1 0.01
ACGTcount: A:0.16, C:0.23, G:0.24, T:0.36
Consensus pattern (161 bp):
CTTTAGCGGCGTTTTGGTCTAAGCGCCGCTAATACTCCGATCTTTAGCGGCGTTTTTATGAAAGC
GCCGCTAATGCCCCGATCTTTAGCAGCATTTCTAACTATGCGCCACTAATTCGCGAATCTTTAGC
GGCGTTTTTGTTGTGCCGCTAATGCTCGGGT
Found at i:37331883 original size:25 final size:26
Alignment explanation
Indices: 37331850--37331905 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
37331840 GTTCGACTAA
37331850 TTTATACAAATTAAATATAT-A-TATAT
1 TTTATAC-AATTAAATAT-TGACTATAT
*
37331876 TTTA-ACAATTAATTATTGACTATAT
1 TTTATACAATTAAATATTGACTATAT
37331901 TTTAT
1 TTTAT
37331906 GATTAATTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
23 1 0.04
24 10 0.38
25 11 0.42
26 4 0.15
ACGTcount: A:0.43, C:0.05, G:0.02, T:0.50
Consensus pattern (26 bp):
TTTATACAATTAAATATTGACTATAT
Found at i:37331995 original size:16 final size:17
Alignment explanation
Indices: 37331974--37332005 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
37331964 TACGGGGTAT
37331974 AGATTTAAGG-TAATTG
1 AGATTTAAGGTTAATTG
37331990 AGATTTAAGGTTAATT
1 AGATTTAAGGTTAATT
37332006 TAGGGGTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.38, C:0.00, G:0.22, T:0.41
Consensus pattern (17 bp):
AGATTTAAGGTTAATTG
Found at i:37332024 original size:15 final size:15
Alignment explanation
Indices: 37332003--37332038 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
37331993 TTTAAGGTTA
37332003 ATTTAGGGGTTAGAG
1 ATTTAGGGGTTAGAG
* *
37332018 GTTTAGGGGTTTGAG
1 ATTTAGGGGTTAGAG
37332033 ATTTAG
1 ATTTAG
37332039 AGTTAATTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (15 bp):
ATTTAGGGGTTAGAG
Found at i:37332324 original size:14 final size:14
Alignment explanation
Indices: 37332305--37332331 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
37332295 TTTTTTTTGA
37332305 TATATATATATGGC
1 TATATATATATGGC
37332319 TATATATATATGG
1 TATATATATATGG
37332332 TTAATTAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.04, G:0.15, T:0.44
Consensus pattern (14 bp):
TATATATATATGGC
Found at i:37333423 original size:37 final size:38
Alignment explanation
Indices: 37333353--37333424 Score: 103
Period size: 37 Copynumber: 1.9 Consensus size: 38
37333343 AAATTTGATG
* *
37333353 TTTAGGGGTTAGGGGGATTTAGGGTTTAAGGGTTATAT
1 TTTAGGGGTTAGAGGGATTTAGGGTGTAAGGGTTATAT
37333391 TTTAGGGGTTA-AGGGATTTAGGG-GTAATGGGTTA
1 TTTAGGGGTTAGAGGGATTTAGGGTGTAA-GGGTTA
37333425 GGGGGTTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
36 3 0.10
37 17 0.55
38 11 0.35
ACGTcount: A:0.22, C:0.00, G:0.40, T:0.38
Consensus pattern (38 bp):
TTTAGGGGTTAGAGGGATTTAGGGTGTAAGGGTTATAT
Found at i:37333652 original size:34 final size:36
Alignment explanation
Indices: 37333595--37333663 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 36
37333585 AATTTATTTA
*
37333595 TTTATCAATAAAATTAAATATTATAA-ATTTCAAAC
1 TTTATCAATAAAATTAAATATTATAATATTACAAAC
37333630 TTTATACAA-AAAA-TAAATATTATAATATTACAAA
1 TTTAT-CAATAAAATTAAATATTATAATATTACAAA
37333664 TTAAAAGTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 12 0.39
35 16 0.52
36 3 0.10
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (36 bp):
TTTATCAATAAAATTAAATATTATAATATTACAAAC
Found at i:37342064 original size:66 final size:66
Alignment explanation
Indices: 37341927--37342096 Score: 200
Period size: 66 Copynumber: 2.6 Consensus size: 66
37341917 AGGAAATTAC
* * *
37341927 ACAACTTAAAGCGGAGGCAACATCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAAAACTCCAGC
1 ACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAAAACTCCAGC
37341992 T
66 T
* * *
37341993 ACAACTAAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAACGAAAG-TATGAAGAACTCCAG
1 ACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAA-AAAAGATATGAAAAACTCCAG
37342057 C-
65 CT
** ** * *
37342058 AGCAACTTAAAGTAGATGTGGCAGCAAGAGAAGCAGAGG
1 A-CAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGG
37342097 CGGCAGCGAG
Statistics
Matches: 89, Mismatches: 13, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
65 1 0.01
66 84 0.94
67 4 0.04
ACGTcount: A:0.42, C:0.18, G:0.27, T:0.14
Consensus pattern (66 bp):
ACAACTTAAAGCGGATGCAGCAGCGAGAGAAGCTGAGGTTCAAAAAAGATATGAAAAACTCCAGC
T
Found at i:37342103 original size:21 final size:21
Alignment explanation
Indices: 37342077--37342157 Score: 81
Period size: 21 Copynumber: 3.9 Consensus size: 21
37342067 AAGTAGATGT
*
37342077 GGCAGCAAGAGAAGCAGAGGC
1 GGCAGCGAGAGAAGCAGAGGC
* *
37342098 GGCAGCGAGAGAAGTACAGGC
1 GGCAGCGAGAGAAGCAGAGGC
* *
37342119 TGCAGCGAGGGAAGCAGAGGC
1 GGCAGCGAGAGAAGCAGAGGC
*** *
37342140 TAAAGCGAGGGAAGCAGA
1 GGCAGCGAGAGAAGCAGA
37342158 ATGAATTGTT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.36, C:0.17, G:0.43, T:0.04
Consensus pattern (21 bp):
GGCAGCGAGAGAAGCAGAGGC
Found at i:37342381 original size:43 final size:42
Alignment explanation
Indices: 37342327--37342635 Score: 216
Period size: 43 Copynumber: 7.2 Consensus size: 42
37342317 TGTTGGCCTT
* * *
37342327 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTC
1 TTTAGCGGCGTTTGTGGT-AAAGCGCCGCTAAAGATCAGGGTC
* * *
37342370 TTTAGCGGCGTTTGTGGAAAAAGCGCCACTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGG-TAAAGCGCCGCTAAAGATCAGGGTC
* * * *
37342413 TTTAGCGGCATTTGTGAG-AAAGTGCCGCTATAGATCAGAGTC
1 TTTAGCGGCGTTTGTG-GTAAAGCGCCGCTAAAGATCAGGGTC
* *
37342455 TATT-GCGGCGTTTGAGGGGAAAGCGCCGCTAAAGAAT-A-GGTC
1 T-TTAGCGGCGTTTG-TGGTAAAGCGCCGCTAAAG-ATCAGGGTC
* * *
37342497 TTTAGTGGCGTTTGTGGTATAAACGCCGCTATAGATCAGGGTC
1 TTTAGCGGCGTTTGTGGTA-AAGCGCCGCTAAAGATCAGGGTC
** * * ** *
37342540 TATT-GCGGCGTTT-TAAATAAAAACGCCGCTAAAGACCCTGATC
1 T-TTAGCGGCGTTTGT-GGT-AAAGCGCCGCTAAAGATCAGGGTC
* * *** **
37342583 TTTAGCGGCGCTTCTCCCAAAAATGCCGCTAAAGATCAGGGTC
1 TTTAGCGGCGTTTGT-GGTAAAGCGCCGCTAAAGATCAGGGTC
37342626 TTTAGCGGCG
1 TTTAGCGGCG
37342636 CTTCCACTAA
Statistics
Matches: 211, Mismatches: 40, Indels: 30
0.75 0.14 0.11
Matches are distributed among these distances:
41 7 0.03
42 59 0.28
43 138 0.65
44 7 0.03
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGGTAAAGCGCCGCTAAAGATCAGGGTC
Found at i:37342567 original size:85 final size:85
Alignment explanation
Indices: 37342327--37342574 Score: 263
Period size: 85 Copynumber: 2.9 Consensus size: 85
37342317 TGTTGGCCTT
* * * *
37342327 TTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCT-TTAGCGGCGTTTGTGGAAAA
1 TTTAGTGGCGTTTGTGGT-AAAGCGCCGCTATAGATCAGGGTCTATT-GCGGCGTTT-TAGAAAA
*
37342391 AGCGCCACTAAAG-ATCATGGTC
63 AGCGCCGCTAAAGAATCATGGTC
* * * * * **
37342413 TTTAGCGGCATTTGTGAG-AAAGTGCCGCTATAGATCAGAGTCTATTGCGGCGTTTGAGGGGAAA
1 TTTAGTGGCGTTTGTG-GTAAAGCGCCGCTATAGATCAGGGTCTATTGCGGCGTTTTA-GAAAAA
37342477 GCGCCGCTAAAGAAT-A-GGTC
64 GCGCCGCTAAAGAATCATGGTC
* *
37342497 TTTAGTGGCGTTTGTGGTATAAACGCCGCTATAGATCAGGGTCTATTGCGGCGTTTTAAATAAAA
1 TTTAGTGGCGTTTGTGGTA-AAGCGCCGCTATAGATCAGGGTCTATTGCGGCGTTTTAGA-AAAA
*
37342562 ACGCCGCTAAAGA
64 GCGCCGCTAAAGA
37342575 CCCTGATCTT
Statistics
Matches: 133, Mismatches: 22, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
83 1 0.01
84 19 0.14
85 95 0.71
86 17 0.13
87 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (85 bp):
TTTAGTGGCGTTTGTGGTAAAGCGCCGCTATAGATCAGGGTCTATTGCGGCGTTTTAGAAAAAGC
GCCGCTAAAGAATCATGGTC
Found at i:37343294 original size:3 final size:3
Alignment explanation
Indices: 37343286--37343312 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
37343276 TATAAAAACT
37343286 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
37343313 AAAAGAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:37346423 original size:30 final size:29
Alignment explanation
Indices: 37346389--37346494 Score: 131
Period size: 30 Copynumber: 3.6 Consensus size: 29
37346379 GACTATTGAA
*
37346389 TATGAAAAGGGATGGCTTCGACCATTGGTT
1 TATGAAAAGGGATGG-TTCGACCATTGATT
* **
37346419 TATGAAAAGGGATGGTGACGACCATCAATT
1 TATGAAAAGGGATGGT-TCGACCATTGATT
* *
37346449 AATGAAAAGGGATGGTTTTGACCATTGATT
1 TATGAAAAGGGATGG-TTCGACCATTGATT
37346479 TATGAAAAGGGATGGT
1 TATGAAAAGGGATGGT
37346495 GACTGTAACA
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
29 2 0.03
30 61 0.95
31 1 0.02
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (29 bp):
TATGAAAAGGGATGGTTCGACCATTGATT
Found at i:37347914 original size:40 final size:40
Alignment explanation
Indices: 37347869--37348100 Score: 376
Period size: 40 Copynumber: 5.8 Consensus size: 40
37347859 ATAACCACAA
* * * *
37347869 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
37347909 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
37347949 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
37347989 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
* *
37348029 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
* *
37348069 GCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
37348101 CATTCAAATG
Statistics
Matches: 182, Mismatches: 9, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
39 1 0.01
40 177 0.97
41 4 0.02
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
Found at i:37349875 original size:30 final size:30
Alignment explanation
Indices: 37349832--37350012 Score: 184
Period size: 30 Copynumber: 6.0 Consensus size: 30
37349822 TCATCAAATA
*
37349832 ATGAAAAGGGATGGTTTTGACCATCGATTT
1 ATGAAAAGGGATGGTTTCGACCATCGATTT
* * ** *
37349862 ATTAAAAAGGATGGTGACGACCATCGATTA
1 ATGAAAAGGGATGGTTTCGACCATCGATTT
37349892 ATGAAAAGGGATGGTTTCGACCATCGATTTT
1 ATGAAAAGGGATGGTTTCGACCATCGA-TTT
* * ** *
37349923 ACGAAAAGGGATAGTGACGACCATCGATTA
1 ATGAAAAGGGATGGTTTCGACCATCGATTT
* * ** * *
37349953 ATTAAAAGTGATGGTGACGACCATCGGTTA
1 ATGAAAAGGGATGGTTTCGACCATCGATTT
*
37349983 ATGAAAAGGGATGGCTTCGACCATCG-TTT
1 ATGAAAAGGGATGGTTTCGACCATCGATTT
37350012 A
1 A
37350013 GCACACTTTG
Statistics
Matches: 123, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
29 3 0.02
30 95 0.77
31 25 0.20
ACGTcount: A:0.34, C:0.14, G:0.26, T:0.27
Consensus pattern (30 bp):
ATGAAAAGGGATGGTTTCGACCATCGATTT
Found at i:37349908 original size:60 final size:61
Alignment explanation
Indices: 37349814--37349978 Score: 215
Period size: 61 Copynumber: 2.7 Consensus size: 61
37349804 GGGCTGTCAC
* * * * **
37349814 AGTGACGATCATCAAATAATGAAAAGGGATGGTTTTGACCATCGA-TTTATTAAAAAGGAT
1 AGTGACGACCATCGATTAATGAAAAGGGATGGTTTCGACCATCGATTTTACGAAAAAGGAT
* *
37349874 GGTGACGACCATCGATTAATGAAAAGGGATGGTTTCGACCATCGATTTTACGAAAAGGGAT
1 AGTGACGACCATCGATTAATGAAAAGGGATGGTTTCGACCATCGATTTTACGAAAAAGGAT
* * **
37349935 AGTGACGACCATCGATTAATTAAAAGTGATGGTGACGACCATCG
1 AGTGACGACCATCGATTAATGAAAAGGGATGGTTTCGACCATCG
37349979 GTTAATGAAA
Statistics
Matches: 91, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
60 40 0.44
61 51 0.56
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (61 bp):
AGTGACGACCATCGATTAATGAAAAGGGATGGTTTCGACCATCGATTTTACGAAAAAGGAT
Found at i:37355853 original size:15 final size:15
Alignment explanation
Indices: 37355833--37355862 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37355823 TTTCTCTTCT
37355833 TCTTTTACTTTTTCC
1 TCTTTTACTTTTTCC
*
37355848 TCTTTTATTTTTTCC
1 TCTTTTACTTTTTCC
37355863 GATTGTGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.23, G:0.00, T:0.70
Consensus pattern (15 bp):
TCTTTTACTTTTTCC
Found at i:37359349 original size:43 final size:43
Alignment explanation
Indices: 37359301--37359384 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 43
37359291 GGGTAAATCG
* *
37359301 AACAACCCATGTTTATCTTCTCCTCTTTTTAAATTATTTTTCC
1 AACAACCCAAGATTATCTTCTCCTCTTTTTAAATTATTTTTCC
*
37359344 AACAACCTAAGATTATCTTCTCCTCTTTTTAAATTATTTTT
1 AACAACCCAAGATTATCTTCTCCTCTTTTTAAATTATTTTT
37359385 TTCTAGGATA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.02, T:0.49
Consensus pattern (43 bp):
AACAACCCAAGATTATCTTCTCCTCTTTTTAAATTATTTTTCC
Found at i:37369520 original size:20 final size:20
Alignment explanation
Indices: 37369491--37369536 Score: 74
Period size: 20 Copynumber: 2.3 Consensus size: 20
37369481 AGGTTAAACC
37369491 GAGCTAGGATGATAAGATTT
1 GAGCTAGGATGATAAGATTT
* *
37369511 GAGCTGGGATGATCAGATTT
1 GAGCTAGGATGATAAGATTT
37369531 GAGCTA
1 GAGCTA
37369537 AGTAGAAGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.30, C:0.09, G:0.33, T:0.28
Consensus pattern (20 bp):
GAGCTAGGATGATAAGATTT
Found at i:37372929 original size:5 final size:5
Alignment explanation
Indices: 37372919--37373141 Score: 277
Period size: 5 Copynumber: 44.6 Consensus size: 5
37372909 GGGGTAGGAC
37372919 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
* * *
37372969 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAC ATGAC ATGAC ATGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
*** * *
37373019 ATGAT ATGAT ATGAT ATGAT CCAAT ATGAT ATGAT ATGGT GTGAT ATGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT
* ** * *
37373069 CTGAT ATGAT CCGAT ATGTT ATGAT ATGAT AT-AGT ATGAT ATGAT CTGAT
1 ATGAT ATGAT ATGAT ATGAT ATGAT ATGAT ATGA-T ATGAT ATGAT ATGAT
* * * *
37373119 ACGTT ATGAA ATGAT AAGAT ATG
1 ATGAT ATGAT ATGAT ATGAT ATG
37373142 CTCTGATTTG
Statistics
Matches: 186, Mismatches: 30, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
4 1 0.01
5 184 0.99
6 1 0.01
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.37
Consensus pattern (5 bp):
ATGAT
Found at i:37377091 original size:47 final size:47
Alignment explanation
Indices: 37377028--37382433 Score: 10731
Period size: 47 Copynumber: 115.0 Consensus size: 47
37377018 ATGATAGTAT
37377028 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377075 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377122 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377169 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377216 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377263 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377310 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377357 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377404 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377451 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377498 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377545 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377592 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377639 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377686 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377733 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377780 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377827 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377874 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377921 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37377968 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378015 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378062 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378109 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378156 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378203 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378250 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378297 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378344 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378391 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378438 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378485 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378532 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378579 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378626 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378673 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378720 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378767 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378814 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378861 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378908 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37378955 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379002 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379049 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379096 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379143 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379190 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379237 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379284 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379331 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379378 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379425 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379472 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379519 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379566 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379613 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379660 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
*
37379707 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379754 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379801 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379848 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379895 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379942 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37379989 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380036 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380083 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380130 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380177 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380224 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380271 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380318 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380365 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380412 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380459 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380506 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380553 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380600 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380647 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380694 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380741 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380788 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380835 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380882 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380929 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37380976 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381023 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381070 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381117 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381164 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381211 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381258 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381305 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381352 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381399 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381446 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381493 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381540 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381587 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381634 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381681 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381728 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381775 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381822 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381869 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381916 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37381963 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37382010 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37382057 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37382104 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37382151 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37382198 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37382245 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37382292 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* *
37382339 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * * *
37382386 GGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
1 GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
37382433 G
1 G
37382434 TCCCGAAGGG
Statistics
Matches: 5347, Mismatches: 12, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 5347 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
Found at i:37382608 original size:37 final size:37
Alignment explanation
Indices: 37382552--37382630 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
37382542 CCGAGCTCTA
* * *
37382552 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
37382589 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
37382626 AAGAC
1 AAGAC
37382631 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:37384236 original size:20 final size:19
Alignment explanation
Indices: 37384168--37384237 Score: 52
Period size: 20 Copynumber: 3.5 Consensus size: 19
37384158 TTGCATAACT
37384168 GTGCCCCTGTTCGCACTTC
1 GTGCCCCTGTTCGCACTTC
* * * *
37384187 GGTGTCTCT-CTCTGCACATTT
1 -GTGCCCCTGTTC-GCAC-TTC
*
37384208 GTGCTCCTGTTCGCACTTC
1 GTGCCCCTGTTCGCACTTC
37384227 GATGCCCCTGT
1 G-TGCCCCTGT
37384238 ATACACTTTG
Statistics
Matches: 36, Mismatches: 10, Indels: 8
0.67 0.19 0.15
Matches are distributed among these distances:
19 5 0.14
20 27 0.75
21 4 0.11
ACGTcount: A:0.07, C:0.36, G:0.21, T:0.36
Consensus pattern (19 bp):
GTGCCCCTGTTCGCACTTC
Found at i:37384255 original size:60 final size:60
Alignment explanation
Indices: 37384181--37384306 Score: 162
Period size: 60 Copynumber: 2.1 Consensus size: 60
37384171 CCCCTGTTCG
* * * * * * *
37384181 CACTTCGGTGTCTCTCTCTGCACATTTGTGCTCCTGTTCGCACTTCGATGCCCCTGTATA
1 CACTTCGGTCTCTCTATCTGCACATCTATGCTCATGTTCGCACTCCAATGCCCCTGTATA
* * *
37384241 CACTTTGGTCTCTCTATTTTCACATCTATGCTCATGTTCGCACTCCAATGCCCCTGTATA
1 CACTTCGGTCTCTCTATCTGCACATCTATGCTCATGTTCGCACTCCAATGCCCCTGTATA
37384301 CACTTC
1 CACTTC
37384307 AATGTCCCTG
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.15, C:0.33, G:0.14, T:0.37
Consensus pattern (60 bp):
CACTTCGGTCTCTCTATCTGCACATCTATGCTCATGTTCGCACTCCAATGCCCCTGTATA
Found at i:37397241 original size:40 final size:40
Alignment explanation
Indices: 37397197--37397406 Score: 221
Period size: 40 Copynumber: 5.2 Consensus size: 40
37397187 CGTTTAGATA
37397197 AAAAACGCCGTTATAGATCGAGCATTAGCGGCGCTTTTTG
1 AAAAACGCCGTTATAGATCGAGCATTAGCGGCGCTTTTTG
* * *
37397237 AAAAATG-CTTCTATAGATCGAGCATTAGTGGCAG-TTTTT-
1 AAAAACGCCGT-TATAGATCGAGCATTAGCGGC-GCTTTTTG
**
37397276 AAAAGACGCCACTATAGATCGAGCATTAGCGGCGCTTTTTG
1 AAAA-ACGCCGTTATAGATCGAGCATTAGCGGCGCTTTTTG
* * **
37397317 AAAAACG-CTTCTATAGATCGAGCATTAGCGGCACTTTTCA
1 AAAAACGCCGT-TATAGATCGAGCATTAGCGGCGCTTTTTG
* * * * * *
37397357 AAAAACACCGCTATAAATCCAACATTAGCGGCTCTTTTTG
1 AAAAACGCCGTTATAGATCGAGCATTAGCGGCGCTTTTTG
37397397 AAAAACGCCG
1 AAAAACGCCG
37397407 CAAAAAATTT
Statistics
Matches: 140, Mismatches: 22, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
39 8 0.06
40 125 0.89
41 7 0.05
ACGTcount: A:0.32, C:0.21, G:0.20, T:0.27
Consensus pattern (40 bp):
AAAAACGCCGTTATAGATCGAGCATTAGCGGCGCTTTTTG
Found at i:37397293 original size:80 final size:80
Alignment explanation
Indices: 37397208--37397404 Score: 295
Period size: 80 Copynumber: 2.5 Consensus size: 80
37397198 AAAACGCCGT
* * *
37397208 TATAGATCGAGCATTAGCGGCGCTTTTTGAAAAATGCTTCTATAGATCGAGCATTAGTGGCAGTT
1 TATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACGCTTCTATAGATCGAGCATTAGCGGCACTT
* * *
37397273 TTTAAAAGACGCCAC
66 TTCAAAAAACACCAC
37397288 TATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACGCTTCTATAGATCGAGCATTAGCGGCACTT
1 TATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACGCTTCTATAGATCGAGCATTAGCGGCACTT
*
37397353 TTCAAAAAACACCGC
66 TTCAAAAAACACCAC
* * * *
37397368 TATAAATCCAACATTAGCGGCTCTTTTTGAAAAACGC
1 TATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACGC
37397405 CGCAAAAAAT
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
80 106 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.28
Consensus pattern (80 bp):
TATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACGCTTCTATAGATCGAGCATTAGCGGCACTT
TTCAAAAAACACCAC
Found at i:37397845 original size:7 final size:7
Alignment explanation
Indices: 37397824--37397939 Score: 58
Period size: 7 Copynumber: 16.4 Consensus size: 7
37397814 TTAATTATCA
*
37397824 TTATAGT
1 TTATGGT
*
37397831 TTAAGGT
1 TTATGGT
37397838 TTATGGT
1 TTATGGT
* *
37397845 TCAGGGT
1 TTATGGT
*
37397852 ATAT-GT
1 TTATGGT
*
37397858 TTAGGGT
1 TTATGGT
*
37397865 TTAAGGT
1 TTATGGT
*
37397872 TTAAGAGT
1 TTATG-GT
37397880 TACTAT--T
1 T--TATGGT
*
37397887 TTAAGGT
1 TTATGGT
**
37397894 TTATGAA
1 TTATGGT
37397901 TTATGGGT
1 TTAT-GGT
*
37397909 TTATGGA
1 TTATGGT
37397916 TTATGGT
1 TTATGGT
*
37397923 TTATGAT
1 TTATGGT
37397930 TTATGGT
1 TTATGGT
37397937 TTA
1 TTA
37397940 AGGGTTGAGG
Statistics
Matches: 80, Mismatches: 22, Indels: 14
0.69 0.19 0.12
Matches are distributed among these distances:
5 2 0.03
6 4 0.05
7 64 0.80
8 8 0.10
10 2 0.03
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.48
Consensus pattern (7 bp):
TTATGGT
Found at i:37397925 original size:14 final size:14
Alignment explanation
Indices: 37397891--37397939 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
37397881 ACTATTTTAA
*
37397891 GGTTTATGAATTAT
1 GGTTTATGGATTAT
37397905 GGGTTTATGGATTAT
1 -GGTTTATGGATTAT
37397920 GGTTTAT-GATTTAT
1 GGTTTATGGA-TTAT
37397934 GGTTTA
1 GGTTTA
37397940 AGGGTTGAGG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
13 2 0.06
14 17 0.53
15 13 0.41
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (14 bp):
GGTTTATGGATTAT
Found at i:37397951 original size:28 final size:28
Alignment explanation
Indices: 37397890--37397966 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 28
37397880 TACTATTTTA
* *
37397890 AGGTTTATGAATTATGGGTTTATGGATT
1 AGGTTTATGATTTATGGGTTTAAGGATT
*
37397918 ATGGTTTATGATTTAT-GGTTTAAGGGTT
1 A-GGTTTATGATTTATGGGTTTAAGGATT
* *
37397946 GAGGTTTAAGATTTAAGGGTT
1 -AGGTTTATGATTTATGGGTT
37397967 AGGGGTTAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
28 23 0.56
29 18 0.44
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (28 bp):
AGGTTTATGATTTATGGGTTTAAGGATT
Found at i:37397972 original size:28 final size:28
Alignment explanation
Indices: 37397920--37397973 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
37397910 TATGGATTAT
* * *
37397920 GGTTTATGATTTATGGTTTAAGGGTTGA
1 GGTTTAAGATTTAAGGGTTAAGGGTTGA
*
37397948 GGTTTAAGATTTAAGGGTTAGGGGTT
1 GGTTTAAGATTTAAGGGTTAAGGGTT
37397974 AAGAGTTGAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (28 bp):
GGTTTAAGATTTAAGGGTTAAGGGTTGA
Found at i:37397975 original size:21 final size:21
Alignment explanation
Indices: 37397936--37397977 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37397926 TGATTTATGG
*
37397936 TTTAAGGGTTGAGGTTTAAGA
1 TTTAAGGGTTGAGGGTTAAGA
37397957 TTTAAGGGTT-AGGGGTTAAGA
1 TTTAAGGGTTGA-GGGTTAAGA
37397978 GTTGATGGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.29, C:0.00, G:0.36, T:0.36
Consensus pattern (21 bp):
TTTAAGGGTTGAGGGTTAAGA
Found at i:37398049 original size:14 final size:15
Alignment explanation
Indices: 37398017--37398069 Score: 74
Period size: 14 Copynumber: 3.7 Consensus size: 15
37398007 TTTATGATTC
* *
37398017 AGGGTTTAGGAGATG
1 AGGGTTTAGGAGTTT
37398032 AGGG-TTAGGAGTTT
1 AGGGTTTAGGAGTTT
37398046 AGGGTTTAGG-GTTT
1 AGGGTTTAGGAGTTT
37398060 AGGGTTTAGG
1 AGGGTTTAGG
37398070 TTAATTAGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
14 26 0.74
15 9 0.26
ACGTcount: A:0.21, C:0.00, G:0.45, T:0.34
Consensus pattern (15 bp):
AGGGTTTAGGAGTTT
Found at i:37398054 original size:7 final size:7
Alignment explanation
Indices: 37398017--37398069 Score: 63
Period size: 7 Copynumber: 7.4 Consensus size: 7
37398007 TTTATGATTC
37398017 AGGGTTT
1 AGGGTTT
* *
37398024 AGGAGATG
1 AGG-GTTT
37398032 AGGG-TT
1 AGGGTTT
37398038 AGGAGTTT
1 AGG-GTTT
37398046 AGGGTTT
1 AGGGTTT
37398053 AGGGTTT
1 AGGGTTT
37398060 AGGGTTT
1 AGGGTTT
37398067 AGG
1 AGG
37398070 TTAATTAGTT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
6 4 0.10
7 26 0.65
8 10 0.25
ACGTcount: A:0.21, C:0.00, G:0.45, T:0.34
Consensus pattern (7 bp):
AGGGTTT
Found at i:37398433 original size:19 final size:19
Alignment explanation
Indices: 37398409--37398457 Score: 71
Period size: 19 Copynumber: 2.5 Consensus size: 19
37398399 AAATTATAAC
* *
37398409 AAATAAAAATGAAATACAA
1 AAATAAAAATAAAACACAA
37398428 AAATAAAAATAAAACACAA
1 AAATAAAAATAAAACACAA
37398447 AAACTAAAAAT
1 AAA-TAAAAAT
37398458 TCTAATTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 20 0.74
20 7 0.26
ACGTcount: A:0.76, C:0.08, G:0.02, T:0.14
Consensus pattern (19 bp):
AAATAAAAATAAAACACAA
Found at i:37398708 original size:42 final size:40
Alignment explanation
Indices: 37398588--37398708 Score: 102
Period size: 42 Copynumber: 2.9 Consensus size: 40
37398578 TTCATGAAAA
* * *
37398588 AAACGCCGCAAACGGTAAGCAATAGCGGCGTTTTTTTGTTGC
1 AAACGCCGCAAA-AGTAAGCAATAGTGGCGTTTTTTGGTT-C
* * *
37398630 AAACGCCGCAAAAAAGTTGAGTAATAGTAGCG-TTTTTGG-TC
1 AAACGCCGC--AAAAG-TAAGCAATAGTGGCGTTTTTTGGTTC
37398671 TAAACGCCGCTAAAAGTCAAGCAATAGTGGCGTTTTTT
1 -AAACGCCGC-AAAAGT-AAGCAATAGTGGCGTTTTTT
37398709 CCCAAACGCC
Statistics
Matches: 63, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
40 1 0.02
41 17 0.27
42 24 0.38
43 7 0.11
44 14 0.22
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (40 bp):
AAACGCCGCAAAAGTAAGCAATAGTGGCGTTTTTTGGTTC
Found at i:37406045 original size:12 final size:13
Alignment explanation
Indices: 37406028--37406064 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
37406018 GAACCGGACA
37406028 CGAACCGAA-CTC
1 CGAACCGAAGCTC
37406040 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
37406052 CGAACCGTAGCTC
1 CGAACCGAAGCTC
37406065 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:37411955 original size:43 final size:43
Alignment explanation
Indices: 37411907--37412177 Score: 259
Period size: 43 Copynumber: 6.3 Consensus size: 43
37411897 AGTAAATTAT
* * * *
37411907 TTTAGCAGCGTTTGTGATAAAAGCGCTGCTAAAGAACATGATC
1 TTTAGCGGCGTTTGTGATAAAAGCGCAGCTAAAGATCATGTTC
* * * * * *
37411950 TTTAGCTGCGCTTGT-ATGTAAAGCTCAGTTAAAGATCATTTTC
1 TTTAGCGGCGTTTGTGAT-AAAAGCGCAGCTAAAGATCATGTTC
* * *
37411993 TTTAGCGGCGTTTGTGATAAAAGCACCGCTAAAGAAT-ATGATC
1 TTTAGCGGCGTTTGTGATAAAAGCGCAGCTAAAG-ATCATGTTC
* * *
37412036 TTTAGTGGCGTTTGTAGGT-AAGGCGCCA-CTAAAGATCATGTTC
1 TTTAGCGGCGTTTGT-GATAAAAGCG-CAGCTAAAGATCATGTTC
* *
37412079 TTTAGCTGCATTTGTGATAAAAGCGCAGCTAAAGATCATGTTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCAGCTAAAGATCATGTTC
*
37412122 TTTAGCGGCGTTTGTGGGT-AAAGCGTC-GCTAAATG-TCATGTTC
1 TTTAGCGGCGTTTGT-GATAAAAGCG-CAGCTAAA-GATCATGTTC
37412165 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
37412178 TTTCACATAA
Statistics
Matches: 186, Mismatches: 31, Indels: 22
0.78 0.13 0.09
Matches are distributed among these distances:
42 8 0.04
43 167 0.90
44 11 0.06
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCAGCTAAAGATCATGTTC
Found at i:37412010 original size:86 final size:87
Alignment explanation
Indices: 37411907--37412177 Score: 336
Period size: 86 Copynumber: 3.1 Consensus size: 87
37411897 AGTAAATTAT
* * * *
37411907 TTTAGCAGCGTTTGTGATAAAAGCGCTGCTAAAGAACATGATCTTTAGCTGCGCTTGTATGTAAA
1 TTTAGCGGCGTTTGTGATAAAAGCGCAGCTAAAGAACATGATCTTTAGCTGCGTTTGTAGGTAAA
* *
37411972 GC-TCAGTTAAAGATCATTTTC
66 GCGTCAGCTAAAGATCATGTTC
* * *
37411993 TTTAGCGGCGTTTGTGATAAAAGCACCGCTAAAGAATATGATCTTTAG-TGGCGTTTGTAGGTAA
1 TTTAGCGGCGTTTGTGATAAAAGCGCAGCTAAAGAACATGATCTTTAGCT-GCGTTTGTAGGTAA
* *
37412057 GGCGCCA-CTAAAGATCATGTTC
65 AGCGTCAGCTAAAGATCATGTTC
* * * * * *
37412079 TTTAGCTGCATTTGTGATAAAAGCGCAGCTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGTAAA
1 TTTAGCGGCGTTTGTGATAAAAGCGCAGCTAAAGAACATGATCTTTAGCTGCGTTTGTAGGTAAA
37412144 GCGTC-GCTAAATG-TCATGTTC
66 GCGTCAGCTAAA-GATCATGTTC
37412165 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
37412178 TTTCACATAA
Statistics
Matches: 157, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
85 1 0.01
86 153 0.97
87 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33
Consensus pattern (87 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCAGCTAAAGAACATGATCTTTAGCTGCGTTTGTAGGTAAA
GCGTCAGCTAAAGATCATGTTC
Found at i:37412167 original size:129 final size:128
Alignment explanation
Indices: 37411935--37412177 Score: 303
Period size: 129 Copynumber: 1.9 Consensus size: 128
37411925 AAAAGCGCTG
* * * * *
37411935 CTAAAGAACATGATCTTTAGCTGCGCTTGTATGTAAAGCTCAGTTAAAGATCATTTTCTTTAGCG
1 CTAAAGAACATGATCTTTAGCTGCACTTGTATGAAAAGCGCAGCTAAAGATCATGTTCTTTAGCG
*
37412000 GCGTTTGTGATAAAAGCACCGCTAAAGAATATGATCTTTAGTGGCGTTTGTAGGTAAGGCGCCA
66 GCGTTTGTGATAAAAGCACCGCTAAAG-ATATGATCTTTAGCGGCGTTTGTAGGTAAGGCGCCA
* * *
37412064 CTAAAGATCATGTTCTTTAGCTGCATTTGTGAT-AAAAGCGCAGCTAAAGATCATGTTCTTTAGC
1 CTAAAGAACATGATCTTTAGCTGCACTTGT-ATGAAAAGCGCAGCTAAAGATCATGTTCTTTAGC
* ** *
37412128 GGCGTTTGTGGGT-AAAGCGTCGCTAAATG-TCATGTTCTTTAGCGGCGTTT
65 GGCGTTTGT-GATAAAAGCACCGCTAAA-GAT-ATGATCTTTAGCGGCGTTT
37412178 TTTCACATAA
Statistics
Matches: 97, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
128 1 0.01
129 91 0.94
130 5 0.05
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.33
Consensus pattern (128 bp):
CTAAAGAACATGATCTTTAGCTGCACTTGTATGAAAAGCGCAGCTAAAGATCATGTTCTTTAGCG
GCGTTTGTGATAAAAGCACCGCTAAAGATATGATCTTTAGCGGCGTTTGTAGGTAAGGCGCCA
Found at i:37413871 original size:31 final size:30
Alignment explanation
Indices: 37413805--37413871 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
37413795 TTTGCATTTG
* *
37413805 ATATTTTAAATACAAATTTTTTATTTTATT
1 ATATTTTAAATAAAAATTGTTTATTTTATT
* *
37413835 TTATTTTATATAAATAATTGTTTA-TTTATAT
1 ATATTTTAAATAAA-AATTGTTTATTTTAT-T
37413866 ATATTT
1 ATATTT
37413872 GTTCGCTAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
30 16 0.53
31 14 0.47
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (30 bp):
ATATTTTAAATAAAAATTGTTTATTTTATT
Found at i:37414754 original size:43 final size:43
Alignment explanation
Indices: 37414705--37414832 Score: 195
Period size: 43 Copynumber: 3.0 Consensus size: 43
37414695 TTCTAAAAAT
37414705 GCCGCTAAAGGCCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGGCCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
37414748 GCCGCTAAAGGCCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGGCCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
37414791 GCCGCTAAAAGACCATA-ACCTCTAGCGGCACTTTTCCAACAA
1 GCCGCT-AAAGGCCA-AGACCTTTAGCGGCGCTTTTCCCACAA
37414833 CCAGCGCTTT
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
43 49 0.62
44 29 0.37
45 1 0.01
ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19
Consensus pattern (43 bp):
GCCGCTAAAGGCCAAGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:37415898 original size:53 final size:53
Alignment explanation
Indices: 37415832--37415946 Score: 221
Period size: 53 Copynumber: 2.2 Consensus size: 53
37415822 AGAATTAATA
37415832 AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCCAAAAGTTCTGATTT
1 AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCCAAAAGTTCTGATTT
*
37415885 AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCTAAAAGTTCTGATTT
1 AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCCAAAAGTTCTGATTT
37415938 AAACTGAAA
1 AAACTGAAA
37415947 ATTATCCCTT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 61 1.00
ACGTcount: A:0.42, C:0.14, G:0.20, T:0.24
Consensus pattern (53 bp):
AAACTGAAAGGAGAATGCAATAGCATGATGACTTGACCCAAAAGTTCTGATTT
Found at i:37421996 original size:242 final size:242
Alignment explanation
Indices: 37421571--37422053 Score: 948
Period size: 242 Copynumber: 2.0 Consensus size: 242
37421561 CCGATAAAAG
37421571 AAGTTTATCGGCGGTATGTACCAAGAACAACAAATGATTGGTATATGATGCAAACACATAAACTA
1 AAGTTTATCGGCGGTATGTACCAAGAACAACAAATGATTGGTATATGATGCAAACACATAAACTA
37421636 TAGTCGGTCAAAGGGGTTATTAATCATTCATTACTAAATTAGAAAAAGGTATTGACAACCACACA
66 TAGTCGGTCAAAGGGGTTATTAATCATTCATTACTAAATTAGAAAAAGGTATTGACAACCACACA
37421701 GCATATAAAGGGAGGCTAATTTTCATTCATACCTGAACAATGTATTTGCTGAATTAAGAAAGTGT
131 GCATATAAAGGGAGGCTAATTTTCATTCATACCTGAACAATGTATTTGCTGAATTAAGAAAGTGT
37421766 CCAACAAGAAGTACTCCTTATGAGAGTAAACTTATGATCTAAAAGGT
196 CCAACAAGAAGTACTCCTTATGAGAGTAAACTTATGATCTAAAAGGT
37421813 AAGTTTATCGGCGGTATGTACCAAGAACAACAAATGATTGGTATATGATGCAAACACATAAACTA
1 AAGTTTATCGGCGGTATGTACCAAGAACAACAAATGATTGGTATATGATGCAAACACATAAACTA
37421878 TAGTCGGTCAAAGGGGTTATTAATCATTCATTACTAAATTAGAAAAAGGTATTGACAACCACACA
66 TAGTCGGTCAAAGGGGTTATTAATCATTCATTACTAAATTAGAAAAAGGTATTGACAACCACACA
* *
37421943 GCATTTAAAGGGAGGCTAATTTTCATTCATACCTGAACAATGTATTTGCTGAATTGAGAAAGTGT
131 GCATATAAAGGGAGGCTAATTTTCATTCATACCTGAACAATGTATTTGCTGAATTAAGAAAGTGT
37422008 CCAACAAGAAGTACTCCTTATGAGAGTAAACTTATGATCTAAAAGG
196 CCAACAAGAAGTACTCCTTATGAGAGTAAACTTATGATCTAAAAGG
37422054 GGAATTAGAG
Statistics
Matches: 239, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
242 239 1.00
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (242 bp):
AAGTTTATCGGCGGTATGTACCAAGAACAACAAATGATTGGTATATGATGCAAACACATAAACTA
TAGTCGGTCAAAGGGGTTATTAATCATTCATTACTAAATTAGAAAAAGGTATTGACAACCACACA
GCATATAAAGGGAGGCTAATTTTCATTCATACCTGAACAATGTATTTGCTGAATTAAGAAAGTGT
CCAACAAGAAGTACTCCTTATGAGAGTAAACTTATGATCTAAAAGGT
Found at i:37424140 original size:74 final size:79
Alignment explanation
Indices: 37424051--37424210 Score: 249
Period size: 75 Copynumber: 2.1 Consensus size: 79
37424041 ATAAATTGAT
*
37424051 TTATTTTTTGCGGCG-TTTTTATGAAAACGCCACTAAATGTTTTGCTATATAAAAT-G-GCTA-T
1 TTATTTTTTGCGGCGTTTTTTATAAAAACGCCACTAAATGTTTTGCTATATAAAATGGCGCTATT
37424112 T-TTTAAAGTAAAA
66 TGTTTAAAGTAAAA
* * *
37424125 TTATTTTTTGTGGCGTTTTTTATAAAAACGCCGCTAAATGTTTTGCTATATGAAATGGCGCTATT
1 TTATTTTTTGCGGCGTTTTTTATAAAAACGCCACTAAATGTTTTGCTATATAAAATGGCGCTATT
37424190 TGTTTAAAGTAAAA
66 TGTTTAAAGTAAAA
37424204 TTATTTT
1 TTATTTT
37424211 ACTATCAAAT
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
74 14 0.18
75 37 0.48
76 1 0.01
77 4 0.05
78 2 0.03
79 19 0.25
ACGTcount: A:0.30, C:0.10, G:0.16, T:0.44
Consensus pattern (79 bp):
TTATTTTTTGCGGCGTTTTTTATAAAAACGCCACTAAATGTTTTGCTATATAAAATGGCGCTATT
TGTTTAAAGTAAAA
Found at i:37424974 original size:82 final size:82
Alignment explanation
Indices: 37424879--37425038 Score: 241
Period size: 82 Copynumber: 2.0 Consensus size: 82
37424869 AACCCCAAAT
* *
37424879 CCCAAACCACTAACCTCTAAACCA-TATTTAATATAGAAATTAAAAAACACTAATTAATCTAAAT
1 CCCAAACCACTAACCCCTAAA-CATTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAAC
37424943 CATAAACCCTAACCCGAC
65 CATAAACCCTAACCCGAC
* * * *
37424961 CCCAAACCCCTAACCCCTAAACATTATTTAATATATAAATTAAAATACACTATTTAATCTAAACC
1 CCCAAACCACTAACCCCTAAACATTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACC
*
37425026 CTAAACCCTAACC
66 ATAAACCCTAACC
37425039 TAACACTAAA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
81 2 0.03
82 68 0.97
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (82 bp):
CCCAAACCACTAACCCCTAAACATTATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACC
ATAAACCCTAACCCGAC
Found at i:37425061 original size:82 final size:82
Alignment explanation
Indices: 37424890--37425063 Score: 197
Period size: 82 Copynumber: 2.1 Consensus size: 82
37424880 CCAAACCACT
*
37424890 AACCTCTAAACCATATTTAATATAGAAATTAAAAAACACTAATTAATCTAAATCATAAACCCTAA
1 AACC-CTAAACCATATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACCATAAACCCTAA
* * *
37424955 CCCGACCCCAAACCCCTA
65 CCCAACACCAAACCCATA
* * * * *
37424973 ACCCCTAAA-CATTATTTAATATATAAATTAAAATACACTATTTAATCTAAACCCTAAACCCTAA
1 AACCCTAAACCA-TATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACCATAAACCCTAA
* * ***
37425037 CCTAACACTAAATTTATA
65 CCCAACACCAAACCCATA
37425055 AACCCTAAA
1 AACCCTAAA
37425064 TCCTAACTCT
Statistics
Matches: 75, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
81 2 0.03
82 70 0.93
83 3 0.04
ACGTcount: A:0.47, C:0.25, G:0.01, T:0.26
Consensus pattern (82 bp):
AACCCTAAACCATATTTAATATAGAAATTAAAAAACACTAATTAATCTAAACCATAAACCCTAAC
CCAACACCAAACCCATA
Found at i:37425089 original size:14 final size:13
Alignment explanation
Indices: 37425055--37425132 Score: 50
Period size: 14 Copynumber: 5.7 Consensus size: 13
37425045 TAAATTTATA
*
37425055 AACCCTAAATCCT
1 AACCCTTAATCCT
*
37425068 AACTCTTAATCTCT
1 AACCCTTAATC-CT
*
37425082 AACCCTTAACCCCT
1 AACCCTTAA-TCCT
* *
37425096 AACCCCTAACCCAT
1 AACCCTTAATCC-T
*
37425110 AAACCTTAAATCAC-
1 AACCCTT-AATC-CT
37425124 AACCCTTAA
1 AACCCTTAA
37425133 ATCAGAATCC
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
13 14 0.27
14 32 0.63
15 4 0.08
16 1 0.02
ACGTcount: A:0.37, C:0.38, G:0.00, T:0.24
Consensus pattern (13 bp):
AACCCTTAATCCT
Found at i:37425155 original size:14 final size:15
Alignment explanation
Indices: 37425138--37425169 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
37425128 CTTAAATCAG
37425138 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
37425152 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
37425167 AAT
1 AAT
37425170 TTATAAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:37425586 original size:41 final size:41
Alignment explanation
Indices: 37425524--37425846 Score: 511
Period size: 41 Copynumber: 7.9 Consensus size: 41
37425514 AAATGTTTTT
**
37425524 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
*
37425565 GCGGTGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
**
37425606 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
*
37425647 GCGGTGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
*
37425688 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTAAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
* * *
37425729 GTGGCGCTTTCTCAAAACCGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
*
37425770 GCGGCGCTTTCTCAAAAACGCCGCTAAAGATCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
* * *
37425811 GCGGCACTTTTTTTAAAAACGCGGCTAAAGATCTGA
1 GCGGCGC-TTTTTCAAAAACGCCGCTAAAGATCTGA
37425847 AAGGTACAAA
Statistics
Matches: 260, Mismatches: 21, Indels: 1
0.92 0.07 0.00
Matches are distributed among these distances:
41 235 0.90
42 25 0.10
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.24
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGATCTGAGCATTA
Found at i:37425919 original size:26 final size:27
Alignment explanation
Indices: 37425866--37425923 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
37425856 AACGATGTCG
*
37425866 TTGGGCTTAGACTTTTTGCGGTGTTTT
1 TTGGGCTTAGACTTTTTGCGGCGTTTT
37425893 TTGGGCTTAGACTTTTTGCGGCGTTTT
1 TTGGGCTTAGACTTTTTGCGGCGTTTT
37425920 TTGG
1 TTGG
37425924 AAAAACGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.07, C:0.12, G:0.31, T:0.50
Consensus pattern (27 bp):
TTGGGCTTAGACTTTTTGCGGCGTTTT
Found at i:37426023 original size:12 final size:12
Alignment explanation
Indices: 37426006--37426031 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
37425996 TTTTTTGTCC
37426006 AAACGCCGCTAA
1 AAACGCCGCTAA
37426018 AAACGCCGCTAA
1 AAACGCCGCTAA
37426030 AA
1 AA
37426032 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:37430694 original size:24 final size:23
Alignment explanation
Indices: 37430646--37430691 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
37430636 TTTGTCAATT
*
37430646 TAAATATTTTTATTATTTATAAA
1 TAAATATTTTTAATATTTATAAA
37430669 TAAATATTTTTAAT-TTTACTAAA
1 TAAATATTTTTAATATTTA-TAAA
37430692 ATATTGGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
TAAATATTTTTAATATTTATAAA
Found at i:37440008 original size:71 final size:71
Alignment explanation
Indices: 37439928--37440626 Score: 268
Period size: 71 Copynumber: 9.9 Consensus size: 71
37439918 CACGACCTTC
* * *
37439928 AAAACAGTTAGCAAAAGTGAAAAGCTCACAACTA-CTATT-GCAAGTC-TCACAGGTTTAATACC
1 AAAATAGTTAGCAAAAGTTAAAAGCTCACAACTATC-ATTCG-AAGGCTTCACA-GTTTAATACC
37439990 GCAGCCTCA
63 GCAGCCTCA
* * * ** *
37439999 AAAATAGTTAACAAGAGTTAAAAGCTCCCAACTATCATTCGAAGGCTTGTCAGTTTAATATCGCA
1 AAAATAGTTAGCAAAAGTTAAAAGCTCACAACTATCATTCGAAGGCTTCACAGTTTAATACCGCA
*
37440064 GCCTCC
66 GCCTCA
** * * * *
37440070 AAAATAGTTAGCAAAAGTTAAAAGCTC-CTAGTTGTCATTCCAAGGC-TCATAGATTTAATACTG
1 AAAATAGTTAGCAAAAGTTAAAAGCTCAC-AACTATCATTCGAAGGCTTCACAG-TTTAATACCG
37440133 CAGCCTTC-
64 CAGCC-TCA
* *** * * ** * *
37440141 AAAACAGTTAATGAGAGTTAAAAGCTCTCAGTTGTCATTCTAAGGC-TCACAAGTTTAATACCGC
1 AAAATAGTTAGCAAAAGTTAAAAGCTCACAACTATCATTCGAAGGCTTCAC-AGTTTAATACCGC
*
37440205 AGCCTCT
65 AGCCTCA
* * ** * * * * * * ** *
37440212 AATATAGCTAGTGAGAGTTAAAAGCTCCCAGCTTTCATTCTAAGGCTTGCA-TGTTTAGCACTGC
1 AAAATAGTTAGCAAAAGTTAAAAGCTCACAACTATCATTCGAAGGCTT-CACAGTTTAATACCGC
* *
37440276 AGACTCC
65 AGCCTCA
* * * ** ** * *
37440283 AAAATAGTTAACGAGACCTAAAAGCTTC-CAGTTCTCATT-GTAAGGCTCTCA-AGTTTAATATC
1 AAAATAGTTAGCAAAAGTTAAAAGC-TCACAACTATCATTCG-AAGGCT-TCACAGTTTAATACC
**
37440345 GCAGTATCA
63 GCAGCCTCA
* * * * * *
37440354 AAAATAGTTA--AAGAGAGTAAAAAGCTC-CTAGCTGTCATTCTAA-GCATTGCA-GGTTTAAAA
1 AAAATAGTTAGCAA-A-AGTTAAAAGCTCAC-AACTATCATTCGAAGGC-TT-CACAGTTTAATA
*
37440414 CCGCAGCCTCC
61 CCGCAGCCTCA
* * * * * * * * * * * *
37440425 CAAATAGTTAGCGAGAGTTAAAAGATCTCAGCTATCATTCTAAGGCTTGTA-GGTTTAAAACTGT
1 AAAATAGTTAGCAAAAGTTAAAAGCTCACAACTATCATTCGAAGGCTT-CACAGTTTAATACCGC
*
37440489 AGCCTCC
65 AGCCTCA
* * * * * ** * * *
37440496 CAAATAGTTTGCGAGAGTTAAAAGCTCCCATTTGTCATTCTAAGGC-TCACAAGTGTAATACCGC
1 AAAATAGTTAGCAAAAGTTAAAAGCTCACAACTATCATTCGAAGGCTTCAC-AGTTTAATACCGC
37440560 AGCCTC-
65 AGCCTCA
* * * * * * **
37440566 CAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTGTCATTTTAAGGC-TCACAGGTTTAATAC
1 AAAATAGTTAGCAAAAGTTAAAAGCTCACAACTATCATTCGAAGGCTTCACA-GTTTAATAC
37440627 TGCAAACTCC
Statistics
Matches: 501, Mismatches: 100, Indels: 55
0.76 0.15 0.08
Matches are distributed among these distances:
69 3 0.01
70 66 0.13
71 412 0.82
72 17 0.03
73 3 0.01
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (71 bp):
AAAATAGTTAGCAAAAGTTAAAAGCTCACAACTATCATTCGAAGGCTTCACAGTTTAATACCGCA
GCCTCA
Found at i:37440164 original size:142 final size:142
Alignment explanation
Indices: 37439906--37440625 Score: 507
Period size: 142 Copynumber: 5.1 Consensus size: 142
37439896 AATTCCAATA
* * * * * ** *
37439906 CAAGTTTAATATCAC-GACCTTCAAAACAGTTAGCAAAAGTGAAAAGCTCACAACT-ACTATTGC
1 CAAGTTTAATATCGCAG-CCTCCAAAATAGTTAGCAAAAGTTAAAAGCTCCCAGTTGTC-ATT-C
* * * *
37439969 -AAGTCTCACAGGTTTAATACCGCAGCC-TCAAAAATAGTTAACAAGAGTTAAAAGCTCCCAACT
63 TAAGGCTCACAGATTTAATACCGCAGCCTTC-AAAATAGTTAACGAGAGTTAAAAGCTCCCAGCT
*
37440032 ATCATTCGAAGGCTTGT
127 ATCATTCGAAGGC-TCT
* *
37440049 C-AGTTTAATATCGCAGCCTCCAAAATAGTTAGCAAAAGTTAAAAGCTCCTAGTTGTCATTCCAA
1 CAAGTTTAATATCGCAGCCTCCAAAATAGTTAGCAAAAGTTAAAAGCTCCCAGTTGTCATTCTAA
* * * * * * *
37440113 GGCTCATAGATTTAATACTGCAGCCTTCAAAACAGTTAATGAGAGTTAAAAGCTCTCAGTTGTCA
66 GGCTCACAGATTTAATACCGCAGCCTTCAAAATAGTTAACGAGAGTTAAAAGCTCCCAGCTATCA
* *
37440178 TTCTAAGGCTCA
131 TTCGAAGGCTCT
* * * * ** *
37440190 CAAGTTTAATACCGCAGCCTCTAATATAGCTAGTGAGAGTTAAAAGCTCCCAGCTT-TCATTCTA
1 CAAGTTTAATATCGCAGCCTCCAAAATAGTTAGCAAAAGTTAAAAGCTCCCAG-TTGTCATTCTA
** ** * * * ** * * *
37440254 AGGCTTGCATG-TTTAGCACTGCAGACTCCAAAATAGTTAACGAGACCTAAAAGCTTCCAGTTCT
65 AGGCTCACA-GATTTAATACCGCAGCCTTCAAAATAGTTAACGAGAGTTAAAAGCTCCCAGCTAT
37440318 CATT-GTAAGGCTCT
129 CATTCG-AAGGCTCT
** * * * *
37440332 CAAGTTTAATATCGCAGTATCAAAAATAGTTA--AAGAGAGTAAAAAGCTCCTAGCTGTCATTCT
1 CAAGTTTAATATCGCAGCCTCCAAAATAGTTAGCAA-A-AGTTAAAAGCTCCCAGTTGTCATTCT
** * * * * * * *
37440395 AA-GCATTGCAGGTTTAAAACCGCAGCCTCCCAAATAGTTAGCGAGAGTTAAAAGATCTCAGCTA
64 AAGGC-TCACAGATTTAATACCGCAGCCTTCAAAATAGTTAACGAGAGTTAAAAGCTCCCAGCTA
*
37440459 TCATTCTAAGGCT-T
128 TCATTCGAAGGCTCT
* * * * * * * * *
37440473 GTAGGTTTAA-AACTGTAGCCTCCCAAATAGTTTGCGAGAGTTAAAAGCTCCCATTTGTCATTCT
1 -CAAGTTTAATATC-GCAGCCTCCAAAATAGTTAGCAAAAGTTAAAAGCTCCCAGTTGTCATTCT
* * * * * *
37440537 AAGGCTCACA-AGTGTAATACCGCAGCC-TCCAAACAGTTAGCGAGAGTTAAAAGCTCCCAACTG
64 AAGGCTCACAGA-TTTAATACCGCAGCCTTCAAAATAGTTAACGAGAGTTAAAAGCTCCCAGCTA
** *
37440600 TCATTTTAAGGCTCA
128 TCATTCGAAGGCTCT
*
37440615 CAGGTTTAATA
1 CAAGTTTAATA
37440626 CTGCAAACTC
Statistics
Matches: 453, Mismatches: 102, Indels: 45
0.75 0.17 0.08
Matches are distributed among these distances:
140 1 0.00
141 60 0.13
142 381 0.84
143 10 0.02
144 1 0.00
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (142 bp):
CAAGTTTAATATCGCAGCCTCCAAAATAGTTAGCAAAAGTTAAAAGCTCCCAGTTGTCATTCTAA
GGCTCACAGATTTAATACCGCAGCCTTCAAAATAGTTAACGAGAGTTAAAAGCTCCCAGCTATCA
TTCGAAGGCTCT
Found at i:37440285 original size:213 final size:209
Alignment explanation
Indices: 37439973--37440709 Score: 698
Period size: 213 Copynumber: 3.5 Consensus size: 209
37439963 TATTGCAAGT
* * *
37439973 CTCACAGGTTTAATACCGCAGCCTCAAAAATAGTTAACAAGAGTTAAAAGCTCCCAACTATCATT
1 CTCACAGGTTTAATACCGCAGCCTC-AAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTATCATT
* * * *
37440038 CGAAGGCTTGTCAGTTTAATA-TCGCAGCCTCCAAAATAGTTAGCAAAAGTTAAAAGCTCCTAGT
65 CTAAGGCTTG-CAGTTTAAAACT-GCAGCCTCCAAAATAGTTAGCGAGAGTTAAAAGCTCC-AGT
* *
37440102 TGTCATTCCAAGGCTCAT-AGATTTAATACTGCAGCCTTCAAAACAGTTAATGAGAGTTAAAAGC
127 TGTCATTCTAAGGCTCATAAG-TTTAATACTGCAGCCTTCAAAACAGTTAAAGAGAGTTAAAAGC
*
37440166 TCTCAGTTGTCATTCTAAGG
191 TC-CAGCTGTCATTCTAAGG
* * * * *
37440186 CTCACAAGTTTAATACCGCAGCCTCTAATATAGCTAGTGAGAGTTAAAAGCTCCCAGCTTTCATT
1 CTCACAGGTTTAATACCGCAGCCTC-AAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTATCATT
** * * **
37440251 CTAAGGCTTGCATGTTTAGCACTGCAGACTCCAAAATAGTTAACGAGACCTAAAAGCTTCCAGTT
65 CTAAGGCTTGCA-GTTTAAAACTGCAGCCTCCAAAATAGTTAGCGAGAGTTAAAAGC-TCCAGTT
* * * *
37440316 CTCATTGTAAGGCTC-TCAAGTTTAATA-TCGCAG--TATCAAAAATAGTTAAAGAGAGTAAAAA
128 GTCATTCTAAGGCTCAT-AAGTTTAATACT-GCAGCCT-TC-AAAACAGTTAAAGAGAGTTAAAA
37440377 GCTCCTAGCTGTCATTCTAA-G
189 GCTCC-AGCTGTCATTCTAAGG
** * * * *
37440398 CATTGCAGGTTTAAAACCGCAGCCTCCCAAATAGTTAGCGAGAGTTAAAAGATCTCAGCTATCAT
1 C-TCACAGGTTTAATACCGCAGCCT-CAAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTATCAT
* * * * *
37440463 TCTAAGGCTTGTAGGTTTAAAACTGTAGCCTCCCAAATAGTTTGCGAGAGTTAAAAGCTCCCATT
64 TCTAAGGCTTGCA-GTTTAAAACTGCAGCCTCCAAAATAGTTAGCGAGAGTTAAAAGCT-CCAGT
* * * * **
37440528 TGTCATTCTAAGGCTCACAAGTGTAATACCGCAGCC-TCCAAACAGTTAGCGAGAGTTAAAAGCT
127 TGTCATTCTAAGGCTCATAAGTTTAATACTGCAGCCTTCAAAACAGTTAAAGAGAGTTAAAAGCT
* *
37440592 CCCAACTGTCATTTTAAGG
192 -CCAGCTGTCATTCTAAGG
* ** * * * * * ** * *
37440611 CTCACAGGTTTAATACTGCAAACTCCAAACAATTAGCGATAGTTAAAAGCGCTTAACTATCATTT
1 CTCACAGGTTTAATACCGCAGCCTCAAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTATCATTC
* * * *
37440676 TAAGGCTCGCAGGTTTAACACCGCAACCTCCAAA
66 TAAGGCTTGCA-GTTTAAAACTGCAGCCTCCAAA
37440710 CAGTTCGTAA
Statistics
Matches: 425, Mismatches: 81, Indels: 38
0.78 0.15 0.07
Matches are distributed among these distances:
211 61 0.14
212 60 0.14
213 297 0.70
214 7 0.02
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (209 bp):
CTCACAGGTTTAATACCGCAGCCTCAAAATAGTTAGCGAGAGTTAAAAGCTCCCAGCTATCATTC
TAAGGCTTGCAGTTTAAAACTGCAGCCTCCAAAATAGTTAGCGAGAGTTAAAAGCTCCAGTTGTC
ATTCTAAGGCTCATAAGTTTAATACTGCAGCCTTCAAAACAGTTAAAGAGAGTTAAAAGCTCCAG
CTGTCATTCTAAGG
Found at i:37440710 original size:140 final size:141
Alignment explanation
Indices: 37440388--37440714 Score: 343
Period size: 140 Copynumber: 2.3 Consensus size: 141
37440378 CTCCTAGCTG
* *
37440388 TCATTCTAA-GCATTGCAGGTTTAAAACCGCAGCCTCCCAAATAGTTAGCGAGAGTTAAAAGATC
1 TCATTCTAAGGC-TCGCAGGTTTAAAACCGCAGCCT-CCAAACAGTTAGCGAGAGTTAAAAGATC
* * *** * ** * * *
37440452 TCAGCTATCATTCTAAGGCTTGTAGGTTTAAAACTGTAGCCTCCCAAATAGTTTGCGAGAGTTAA
64 CCAACTATCATTCTAAGGCTCACAGGTTTAAAACTGCAAACTCCCAAACAATTAGCGAGAGTTAA
* ** *
37440517 AAGCTCCCATTTG
129 AAGCGCCCAACTA
* * * * *
37440530 TCATTCTAAGGCTCACAAGTGTAATACCGCAGCCTCCAAACAGTTAGCGAGAGTTAAAAGCTCCC
1 TCATTCTAAGGCTCGCAGGTTTAAAACCGCAGCCTCCAAACAGTTAGCGAGAGTTAAAAGATCCC
* * * *
37440595 AACTGTCATTTTAAGGCTCACAGGTTTAATACTGCAAACT-CCAAACAATTAGCGATAGTTAAAA
66 AACTATCATTCTAAGGCTCACAGGTTTAAAACTGCAAACTCCCAAACAATTAGCGAGAGTTAAAA
**
37440659 GCGCTTAACTA
131 GCGCCCAACTA
* * *
37440670 TCATTTTAAGGCTCGCAGGTTTAACACCGCAACCTCCAAACAGTT
1 TCATTCTAAGGCTCGCAGGTTTAAAACCGCAGCCTCCAAACAGTT
37440715 CGTAAATTTA
Statistics
Matches: 150, Mismatches: 34, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
140 64 0.43
141 57 0.38
142 27 0.18
143 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.27
Consensus pattern (141 bp):
TCATTCTAAGGCTCGCAGGTTTAAAACCGCAGCCTCCAAACAGTTAGCGAGAGTTAAAAGATCCC
AACTATCATTCTAAGGCTCACAGGTTTAAAACTGCAAACTCCCAAACAATTAGCGAGAGTTAAAA
GCGCCCAACTA
Found at i:37440855 original size:58 final size:58
Alignment explanation
Indices: 37440745--37440857 Score: 147
Period size: 58 Copynumber: 1.9 Consensus size: 58
37440735 TAAGTATTTC
* * **
37440745 AAAAAATATGCCTAAGTTCAAAACAACTCGAGGATTTACATTCTCATTTGATTATATA
1 AAAAAATATGCCTAAGTTCAAAACAACTCGAGGATTTACATCCCCAGCTGATTATATA
* **
37440803 AAAAAATATGCCTAAGTTCAAAATAGGTC-ACGGATTTACATCCCCAGCTGATTAT
1 AAAAAATATGCCTAAGTTCAAAACAACTCGA-GGATTTACATCCCCAGCTGATTAT
37440858 TTTAAATATA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
57 1 0.02
58 46 0.98
ACGTcount: A:0.40, C:0.18, G:0.12, T:0.30
Consensus pattern (58 bp):
AAAAAATATGCCTAAGTTCAAAACAACTCGAGGATTTACATCCCCAGCTGATTATATA
Found at i:37441980 original size:31 final size:31
Alignment explanation
Indices: 37441942--37442004 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
37441932 GCATTCAGTC
*
37441942 CTTAACAGTCCCAGGAATCGAAACCTCAAAA
1 CTTAACAGTCCCAAGAATCGAAACCTCAAAA
*
37441973 CTTAACAGTCCCAAGAATTGAAACCTCAAAA
1 CTTAACAGTCCCAAGAATCGAAACCTCAAAA
37442004 C
1 C
37442005 CTTCTATCAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.43, C:0.29, G:0.11, T:0.17
Consensus pattern (31 bp):
CTTAACAGTCCCAAGAATCGAAACCTCAAAA
Found at i:37449354 original size:43 final size:43
Alignment explanation
Indices: 37449293--37449374 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
37449283 CACATGGAAA
*
37449293 TGTTGTAAGGCCATGTGCCTCACACGGTCGAGTCACACGGCCG
1 TGTTGCAAGGCCATGTGCCTCACACGGTCGAGTCACACGGCCG
* * *
37449336 TGTTGCAAGGCCGTGTGCCTCGCATGGTCGAGTCACACG
1 TGTTGCAAGGCCATGTGCCTCACACGGTCGAGTCACACG
37449375 TCAGTGTCTC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (43 bp):
TGTTGCAAGGCCATGTGCCTCACACGGTCGAGTCACACGGCCG
Found at i:37449681 original size:32 final size:32
Alignment explanation
Indices: 37449645--37449709 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
37449635 AGGTAACAAG
37449645 TAGGAAATCACAAGTTGATAAAGTGCACAACA
1 TAGGAAATCACAAGTTGATAAAGTGCACAACA
*
37449677 TAGGAAATCACAAGTTGATCAAGTGCACAACA
1 TAGGAAATCACAAGTTGATAAAGTGCACAACA
37449709 T
1 T
37449710 GTCACAACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.45, C:0.17, G:0.18, T:0.20
Consensus pattern (32 bp):
TAGGAAATCACAAGTTGATAAAGTGCACAACA
Found at i:37451674 original size:24 final size:24
Alignment explanation
Indices: 37451647--37451698 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
37451637 ATACCGGGTA
*
37451647 GCTCAAGAGAGCCAATATCAGGAT
1 GCTCAAGAGAGCCAATAACAGGAT
* *
37451671 GCTCATGAGAGCTAATAACAGGAT
1 GCTCAAGAGAGCCAATAACAGGAT
37451695 GCTC
1 GCTC
37451699 TTTCAAGCTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (24 bp):
GCTCAAGAGAGCCAATAACAGGAT
Found at i:37457777 original size:25 final size:25
Alignment explanation
Indices: 37457749--37457799 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
37457739 TAAAAGAGGT
**
37457749 ACTAACGGGAAGCTCGTGAGAGCCA
1 ACTAACGGGAAGCTCAAGAGAGCCA
* *
37457774 ACTATCGGGTAGCTCAAGAGAGCCA
1 ACTAACGGGAAGCTCAAGAGAGCCA
37457799 A
1 A
37457800 TATCAGGATG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.33, C:0.24, G:0.29, T:0.14
Consensus pattern (25 bp):
ACTAACGGGAAGCTCAAGAGAGCCA
Found at i:37457812 original size:24 final size:24
Alignment explanation
Indices: 37457766--37457835 Score: 63
Period size: 23 Copynumber: 2.9 Consensus size: 24
37457756 GGAAGCTCGT
*
37457766 GAGAGCCAACTATC-GGGTAGCTCAA
1 GAGAGCCAA-TATCAGGAT-GCTCAA
*
37457791 GAGAGCCAATATCAGGATGCTCAT
1 GAGAGCCAATATCAGGATGCTCAA
* * *
37457815 G-GAGCTAATAACAAGATGCTC
1 GAGAGCCAATATCAGGATGCTC
37457836 TTTCAAGCTG
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
23 17 0.44
24 10 0.26
25 12 0.31
ACGTcount: A:0.34, C:0.21, G:0.26, T:0.19
Consensus pattern (24 bp):
GAGAGCCAATATCAGGATGCTCAA
Found at i:37459434 original size:37 final size:37
Alignment explanation
Indices: 37459393--37459529 Score: 143
Period size: 37 Copynumber: 3.7 Consensus size: 37
37459383 AACATCAGTT
**
37459393 AGTATAACAGTAAGATTTGCTT-AGTTGAGCGCCATTC
1 AGTATAACAGTAAGATTTGCTTGA-TTGAGCTTCATTC
** * *
37459430 AGTATAATGGTATGATTTGCTCGATTGAGCTTCATTC
1 AGTATAACAGTAAGATTTGCTTGATTGAGCTTCATTC
* *
37459467 AATATAACGGTATA-ATTTGCTTGATTGAGCTTCATTC
1 AGTATAACAGTA-AGATTTGCTTGATTGAGCTTCATTC
* *
37459504 AGTATAATAATAAGATTTGGCTTGAT
1 AGTATAACAGTAAGATTT-GCTTGAT
37459530 AGAGTGTACT
Statistics
Matches: 82, Mismatches: 14, Indels: 7
0.80 0.14 0.07
Matches are distributed among these distances:
36 1 0.01
37 73 0.89
38 8 0.10
ACGTcount: A:0.30, C:0.12, G:0.20, T:0.38
Consensus pattern (37 bp):
AGTATAACAGTAAGATTTGCTTGATTGAGCTTCATTC
Found at i:37461009 original size:63 final size:62
Alignment explanation
Indices: 37460860--37461092 Score: 220
Period size: 63 Copynumber: 3.7 Consensus size: 62
37460850 ACACGTCCGC
* * * *
37460860 GTGACTCTAATTCACAAACAATGAGTTACACGACCTAGACACA-TGCCAGTGTCCCTAGCCCAT
1 GTGACTCTAATTCACAAACAGTGAGTTACACGACTTAGACACACT-CCA-TGTCCCTAACCCGT
* * *
37460923 GTGACCCTAATTCACAAACAGTGAGTTACACGGCTTGGACACACTCCCATGTCCCTAACCCGT
1 GTGACTCTAATTCACAAACAGTGAGTTACACGACTTAGACACACT-CCATGTCCCTAACCCGT
* * * * * * * *
37460986 GTGGCTCTAATTTACAAATAGTGACTTATATGGCTTAGACACACGTCCATGCCCCT-ACCTCGT
1 GTGACTCTAATTCACAAACAGTGAGTTACACGACTTAGACACAC-TCCATGTCCCTAACC-CGT
* * * *
37461049 GTGAC-CTTAATTCATAAATAGTGAGTTACATGACTTGGACACAC
1 GTGACTC-TAATTCACAAACAGTGAGTTACACGACTTAGACACAC
37461093 AGCTTGACAC
Statistics
Matches: 142, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
62 4 0.03
63 133 0.94
64 5 0.04
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (62 bp):
GTGACTCTAATTCACAAACAGTGAGTTACACGACTTAGACACACTCCATGTCCCTAACCCGT
Found at i:37465548 original size:24 final size:23
Alignment explanation
Indices: 37465521--37465568 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
37465511 TGGACAGCTC
* *
37465521 TTATACATCAATTTTGGATAGCAT
1 TTATACATCAA-ATTAGATAGCAT
*
37465545 TTATATATCAAATTAGATAGCAT
1 TTATACATCAAATTAGATAGCAT
37465568 T
1 T
37465569 CTCACACCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (23 bp):
TTATACATCAAATTAGATAGCAT
Found at i:37465606 original size:23 final size:23
Alignment explanation
Indices: 37465582--37465825 Score: 197
Period size: 23 Copynumber: 10.5 Consensus size: 23
37465572 ACACCAAAAT
* *
37465582 TTGGACAGCATAAATACAACAAT
1 TTGGACAGCATATATACAACAAA
*
37465605 TTGGGCAGCATATATACAAC-AA
1 TTGGACAGCATATATACAACAAA
* * * *
37465627 TTTGAGCAGCATTTTTACACCAAAA
1 TTGGA-CAGCATATATACAAC-AAA
* *
37465652 TTGGACAGGAAATATACAACAAA
1 TTGGACAGCATATATACAACAAA
** * * *
37465675 TTGGGTAGCATTTAAACATCAAAA
1 TTGGACAGCATATATACAAC-AAA
*
37465699 TTGGACAGCATATATGCAACAAA
1 TTGGACAGCATATATACAACAAA
37465722 TTGCG-CAGCATATATACAACAAA
1 TTG-GACAGCATATATACAACAAA
* *
37465745 TTGGGCAGCATGTATACAACAAA
1 TTGGACAGCATATATACAACAAA
* * *
37465768 TGGGACAGCATTTA-AGAATCAAAA
1 TTGGACAGCATATATACAA-C-AAA
* * *
37465792 GTGGACAACATATATGCAACAAA
1 TTGGACAGCATATATACAACAAA
*
37465815 TTGGGCAGCAT
1 TTGGACAGCAT
37465826 TTAAGCATCA
Statistics
Matches: 170, Mismatches: 42, Indels: 18
0.74 0.18 0.08
Matches are distributed among these distances:
22 8 0.05
23 112 0.66
24 42 0.25
25 8 0.05
ACGTcount: A:0.43, C:0.17, G:0.18, T:0.23
Consensus pattern (23 bp):
TTGGACAGCATATATACAACAAA
Found at i:37465679 original size:70 final size:70
Alignment explanation
Indices: 37465553--37465825 Score: 232
Period size: 70 Copynumber: 3.9 Consensus size: 70
37465543 ATTTATATAT
* * * * *
37465553 CAAATTAGATAGCATTCTCACACCAAAATTTGGACAGCATAA-ATACAACAATTTGGGCAGCATA
1 CAAATTGGACAGCATTTTTACACCAAAA-TTGGACAGCA-AATATACAACAAATTGGGCAGCATA
37465617 TATACAA
64 TATACAA
* * * *
37465624 C-AATTTGAGCAGCATTTTTACACCAAAATTGGACAGGAAATATACAACAAATTGGGTAGCATTT
1 CAAATTGGA-CAGCATTTTTACACCAAAATTGGACAGCAAATATACAACAAATTGGGCAGCATAT
* *
37465688 AAACAT
65 ATACAA
* * * * * *
37465694 CAAAATTGGACAGCATATATGCAAC-AAATTGCG-CAGCATATATACAACAAATTGGGCAGCATG
1 C-AAATTGGACAGCATTTTTACACCAAAATTG-GACAGCAAATATACAACAAATTGGGCAGCATA
37465757 TATACAA
64 TATACAA
* * * * * * * *
37465764 CAAATGGGACAGCA-TTTAAGAATCAAAAGTGGACAACATATATGCAACAAATTGGGCAGCAT
1 CAAATTGGACAGCATTTTTA-CACCAAAATTGGACAGCAAATATACAACAAATTGGGCAGCAT
37465826 TTAAGCATCA
Statistics
Matches: 163, Mismatches: 31, Indels: 17
0.77 0.15 0.08
Matches are distributed among these distances:
68 1 0.01
69 17 0.10
70 110 0.67
71 29 0.18
72 6 0.04
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.23
Consensus pattern (70 bp):
CAAATTGGACAGCATTTTTACACCAAAATTGGACAGCAAATATACAACAAATTGGGCAGCATATA
TACAA
Found at i:37465685 original size:47 final size:47
Alignment explanation
Indices: 37465595--37465828 Score: 224
Period size: 47 Copynumber: 5.0 Consensus size: 47
37465585 GACAGCATAA
* * *
37465595 ATACAAC-AATTTGGGCAGCATATATACAACAATTTGAGCAGCATTT
1 ATACAACAAAATTGGACAGCATATATACAACAAATTGAGCAGCATTT
* * * * * *
37465641 TTACACCAAAATTGGACAGGAAATATACAACAAATTGGGTAGCATTT
1 ATACAACAAAATTGGACAGCATATATACAACAAATTGAGCAGCATTT
* * * * *
37465688 AAACATCAAAATTGGACAGCATATATGCAACAAATTGCGCAGCATAT
1 ATACAACAAAATTGGACAGCATATATACAACAAATTGAGCAGCATTT
* * *
37465735 ATACAAC-AAATTGGGCAGCATGTATACAACAAA-TGGGACAGCATTT
1 ATACAACAAAATTGGACAGCATATATACAACAAATTGAG-CAGCATTT
* * * * *
37465781 A-AGAATCAAAAGTGGACAACATATATGCAACAAATTGGGCAGCATTT
1 ATACAA-CAAAATTGGACAGCATATATACAACAAATTGAGCAGCATTT
37465828 A
1 A
37465829 AGCATCACCT
Statistics
Matches: 152, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
45 6 0.04
46 37 0.24
47 105 0.69
48 4 0.03
ACGTcount: A:0.43, C:0.17, G:0.17, T:0.24
Consensus pattern (47 bp):
ATACAACAAAATTGGACAGCATATATACAACAAATTGAGCAGCATTT
Found at i:37473423 original size:23 final size:23
Alignment explanation
Indices: 37473381--37473603 Score: 189
Period size: 23 Copynumber: 9.6 Consensus size: 23
37473371 CTCACACCAA
* * *
37473381 AAATTGGACAGAATAAATACAAC
1 AAATTGGGCAGCATATATACAAC
*
37473404 AACTTGGGCAGCATATATACAAC
1 AAATTGGGCAGCATATATACAAC
* * * * *
37473427 AATTTGAGCAGCATTTTTACACC
1 AAATTGGGCAGCATATATACAAC
* *
37473450 AAAATTGGACAGCATA-ATTCAAC
1 -AAATTGGGCAGCATATATACAAC
*
37473473 AATTTGGGCAGCATATATACAAC
1 AAATTGGGCAGCATATATACAAC
* * * * *
37473496 AATTTGAGCAGCATTTTTACACC
1 AAATTGGGCAGCATATATACAAC
*
37473519 AAAATTGGGCAGCATATATACAAA
1 -AAATTGGGCAGCATATATACAAC
* * *
37473543 AAATTGGACAGCATTTA-AGCATC
1 AAATTGGGCAGCATATATA-CAAC
* *
37473566 AAAATTGGACAGCATATATGCAAC
1 -AAATTGGGCAGCATATATACAAC
37473590 AAATTGGGCAGCAT
1 AAATTGGGCAGCAT
37473604 TTAAGCATCA
Statistics
Matches: 157, Mismatches: 37, Indels: 12
0.76 0.18 0.06
Matches are distributed among these distances:
22 14 0.09
23 96 0.61
24 47 0.30
ACGTcount: A:0.42, C:0.17, G:0.16, T:0.25
Consensus pattern (23 bp):
AAATTGGGCAGCATATATACAAC
Found at i:37473483 original size:69 final size:69
Alignment explanation
Indices: 37473365--37473556 Score: 276
Period size: 69 Copynumber: 2.7 Consensus size: 69
37473355 CAAATTAGAT
* * *
37473365 AGCATTCTCACACCAAAAATTGGACAGAATAAATACAACAACTTGGGCAGCATATATACAACAAT
1 AGCATTTTTACACC-AAAATTGGACAGCAT-AATACAACAACTTGGGCAGCATATATACAACAAT
37473430 TTGAGC
64 TTGAGC
* *
37473436 AGCATTTTTACACCAAAATTGGACAGCATAATTCAACAATTTGGGCAGCATATATACAACAATTT
1 AGCATTTTTACACCAAAATTGGACAGCATAATACAACAACTTGGGCAGCATATATACAACAATTT
37473501 GAGC
66 GAGC
* * * *
37473505 AGCATTTTTACACCAAAATTGGGCAGCATATATACAAAAAATTGGACAGCAT
1 AGCATTTTTACACCAAAATTGGACAGCATA-ATACAACAACTTGGGCAGCAT
37473557 TTAAGCATCA
Statistics
Matches: 110, Mismatches: 10, Indels: 3
0.89 0.08 0.02
Matches are distributed among these distances:
69 67 0.61
70 31 0.28
71 12 0.11
ACGTcount: A:0.42, C:0.19, G:0.15, T:0.24
Consensus pattern (69 bp):
AGCATTTTTACACCAAAATTGGACAGCATAATACAACAACTTGGGCAGCATATATACAACAATTT
GAGC
Found at i:37473611 original size:47 final size:47
Alignment explanation
Indices: 37473476--37473613 Score: 188
Period size: 47 Copynumber: 2.9 Consensus size: 47
37473466 ATTCAACAAT
* * * *
37473476 TTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTA-CACCAAAA
1 TTGGGCAGCATATATACAACAAATTGGGCAGCA-TTTAAGCATCAAAA
* *
37473523 TTGGGCAGCATATATACAAAAAATTGGACAGCATTTAAGCATCAAAA
1 TTGGGCAGCATATATACAACAAATTGGGCAGCATTTAAGCATCAAAA
* *
37473570 TTGGACAGCATATATGCAACAAATTGGGCAGCATTTAAGCATCA
1 TTGGGCAGCATATATACAACAAATTGGGCAGCATTTAAGCATCA
37473614 CCTATCCGGT
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
46 4 0.05
47 76 0.95
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.25
Consensus pattern (47 bp):
TTGGGCAGCATATATACAACAAATTGGGCAGCATTTAAGCATCAAAA
Found at i:37478522 original size:62 final size:62
Alignment explanation
Indices: 37478447--37478588 Score: 241
Period size: 62 Copynumber: 2.3 Consensus size: 62
37478437 AATTCACGAG
37478447 CAGTGAGTTACACGGCCTAGGCACACGCTCGTGC-CTCTAGCCGTGAGACACTATTTCACAAA
1 CAGTGAGTTACACGGCCTAGGCACACGCTCGTGCTC-CTAGCCGTGAGACACTATTTCACAAA
* *
37478509 CAGTGAGTTACACGGCCTAGGCACACGCTCGTGCTCCTAGCCGTGAGACCCTATTTCATAAA
1 CAGTGAGTTACACGGCCTAGGCACACGCTCGTGCTCCTAGCCGTGAGACACTATTTCACAAA
*
37478571 CAATGAGTTACACGGCCT
1 CAGTGAGTTACACGGCCT
37478589 GGAAACATGA
Statistics
Matches: 76, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
62 75 0.99
63 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (62 bp):
CAGTGAGTTACACGGCCTAGGCACACGCTCGTGCTCCTAGCCGTGAGACACTATTTCACAAA
Found at i:37479140 original size:11 final size:11
Alignment explanation
Indices: 37479112--37479149 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
37479102 AATTATAGTG
*
37479112 AAGAAAGGAAA
1 AAGAAAAGAAA
37479123 ACA-AAAAGAAA
1 A-AGAAAAGAAA
37479134 AAGAAAAGAAA
1 AAGAAAAGAAA
37479145 AAGAA
1 AAGAA
37479150 TTGAATAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 1 0.04
11 22 0.92
12 1 0.04
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (11 bp):
AAGAAAAGAAA
Found at i:37480158 original size:22 final size:23
Alignment explanation
Indices: 37480123--37480165 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
37480113 CAATTAATAT
37480123 TTATGAAAAAATATTTAATTTAA
1 TTATGAAAAAATATTTAATTTAA
*
37480146 TTAT-AAAATATATTTAATTT
1 TTATGAAAAAATATTTAATTT
37480166 CTTTTAAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (23 bp):
TTATGAAAAAATATTTAATTTAA
Found at i:37480554 original size:18 final size:18
Alignment explanation
Indices: 37480519--37480564 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
37480509 AATAATTATT
37480519 ATCATATTTA-AAATAAA
1 ATCATATTTATAAATAAA
*
37480536 ATCATATTTATATATAAA
1 ATCATATTTATAAATAAA
*
37480554 ATTATATTTAT
1 ATCATATTTAT
37480565 TTAATAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 10 0.38
18 16 0.62
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (18 bp):
ATCATATTTATAAATAAA
Found at i:37480577 original size:21 final size:22
Alignment explanation
Indices: 37480540--37480587 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
37480530 AATAAAATCA
* *
37480540 TATTTATATATAAAATTATATT
1 TATTTATATAAAAAATTAGATT
37480562 TATTTA-ATAAAAAATTAGATT
1 TATTTATATAAAAAATTAGATT
37480583 TATTT
1 TATTT
37480588 TTAAATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 18 0.75
22 6 0.25
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (22 bp):
TATTTATATAAAAAATTAGATT
Found at i:37481477 original size:24 final size:24
Alignment explanation
Indices: 37481444--37481500 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
37481434 TTACCACATC
* * * *
37481444 AAATTGAATTTAGATAATGTTAAT
1 AAATTAAATTTAGAAAATATAAAT
*
37481468 AAATTAAATTTTGAAAATATAAAT
1 AAATTAAATTTAGAAAATATAAAT
37481492 AAATTAAAT
1 AAATTAAAT
37481501 ATTTTAAATA
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (24 bp):
AAATTAAATTTAGAAAATATAAAT
Found at i:37481509 original size:24 final size:24
Alignment explanation
Indices: 37481465--37481518 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
37481455 AGATAATGTT
37481465 AATAAATTAAATTTTGAAAATATA
1 AATAAATTAAATTTTGAAAATATA
*
37481489 AATAAATTAAATATTT-TAAATATA
1 AATAAATTAAAT-TTTGAAAATATA
*
37481513 ATTAAA
1 AATAAA
37481519 AATAAACTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (24 bp):
AATAAATTAAATTTTGAAAATATA
Found at i:37483241 original size:38 final size:38
Alignment explanation
Indices: 37483162--37483251 Score: 108
Period size: 38 Copynumber: 2.4 Consensus size: 38
37483152 ACAATATAGA
* *
37483162 AACAATAGACATGCTTAACATGTATTCAGTTCATCAAT
1 AACAGTAGACATGCTTAACATGTATTCAGTTCAACAAT
* ** * *
37483200 AACAGTAGACATGTTTAACATGTATTTGGTTTAACAGT
1 AACAGTAGACATGCTTAACATGTATTCAGTTCAACAAT
*
37483238 AACAGTAGGCATGC
1 AACAGTAGACATGC
37483252 AATCAATAAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 43 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.31
Consensus pattern (38 bp):
AACAGTAGACATGCTTAACATGTATTCAGTTCAACAAT
Found at i:37484843 original size:20 final size:20
Alignment explanation
Indices: 37484815--37484853 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
37484805 TATATAAAAT
37484815 TTTAATAAA-TAAAGAATAAA
1 TTTAATAAATTAAA-AATAAA
*
37484835 TTTATTAAATTAAAAATAA
1 TTTAATAAATTAAAAATAA
37484854 TATAAATATC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.36
Consensus pattern (20 bp):
TTTAATAAATTAAAAATAAA
Found at i:37495997 original size:16 final size:16
Alignment explanation
Indices: 37495976--37496006 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
37495966 CACTTATATT
37495976 CATAAAGCTTAGTAAA
1 CATAAAGCTTAGTAAA
37495992 CATAAAGCTTAGTAA
1 CATAAAGCTTAGTAA
37496007 GTTTACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (16 bp):
CATAAAGCTTAGTAAA
Found at i:37496394 original size:49 final size:50
Alignment explanation
Indices: 37496330--37496446 Score: 139
Period size: 50 Copynumber: 2.4 Consensus size: 50
37496320 CAAAGCTATG
* * * * *
37496330 TCCCAGACATAGTCTTACATGAGATGTT-TCTTGTA-CTGCCAATGCCATA
1 TCCCAGATATGGTCTTACATGAGA-GTTCTCATATAGCTACCAATGCCATA
* * *
37496379 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAGGTACCCATGCCATG
1 TCCCAGATATGGTCTTACATGAGAGTTCTCATATAGCTACCAATGCCATA
37496429 TCCCAGATATGGTCTTAC
1 TCCCAGATATGGTCTTAC
37496447 GGGGGACCTC
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
48 3 0.05
49 27 0.47
50 28 0.48
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (50 bp):
TCCCAGATATGGTCTTACATGAGAGTTCTCATATAGCTACCAATGCCATA
Found at i:37496434 original size:50 final size:49
Alignment explanation
Indices: 37496327--37496446 Score: 143
Period size: 49 Copynumber: 2.4 Consensus size: 49
37496317 TGCCAAAGCT
* * * * *
37496327 ATGTCCCAGACATAGTCTTACATGAGATGTTTCTTGTACTGCCAATGCC
1 ATGTCCCAGATATGGTCTTACATGAGATGTTTCATATACTACCAATGCC
* * *
37496376 ATATCCCAGATATGGTCTTACATGAGA-GTTCTCATATAGGTACCCATGCC
1 ATGTCCCAGATATGGTCTTACATGAGATGTT-TCATATA-CTACCAATGCC
37496426 ATGTCCCAGATATGGTCTTAC
1 ATGTCCCAGATATGGTCTTAC
37496447 GGGGGACCTC
Statistics
Matches: 60, Mismatches: 9, Indels: 3
0.83 0.12 0.04
Matches are distributed among these distances:
48 3 0.05
49 29 0.48
50 28 0.47
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (49 bp):
ATGTCCCAGATATGGTCTTACATGAGATGTTTCATATACTACCAATGCC
Done.