Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 13 of 182
Found at i:4414299 original size:14 final size:15
Alignment explanation
Indices: 4414273--4414301 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
4414263 TATTTGGCGA
4414273 TATAAATTATAATTT
1 TATAAATTATAATTT
4414288 TATAAA-TATAATTT
1 TATAAATTATAATTT
4414302 AAATTTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATAAATTATAATTT
Found at i:4414315 original size:19 final size:21
Alignment explanation
Indices: 4414272--4414315 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
4414262 ATATTTGGCG
4414272 ATATAAATTATAATTTTATAA
1 ATATAAATTATAATTTTATAA
*
4414293 ATATAATTTA-AATTTTA-AA
1 ATATAAATTATAATTTTATAA
4414312 ATAT
1 ATAT
4414316 GGTAATTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 6 0.27
20 7 0.32
21 9 0.41
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATATAAATTATAATTTTATAA
Found at i:4420760 original size:41 final size:41
Alignment explanation
Indices: 4420700--4420821 Score: 129
Period size: 41 Copynumber: 3.0 Consensus size: 41
4420690 AGATTAATGA
*
4420700 TGAATTACACACACATG-CCCTCGTTTGTACTTCGGTACCCC
1 TGAATTACACATACATGCCCCT-GTTTGTACTTCGGTACCCC
** * *
4420741 TGAATTACACATATGTGCCCCTGTTTGTACTTCGTTACCCT
1 TGAATTACACATACATGCCCCTGTTTGTACTTCGGTACCCC
* * ** * *
4420782 TGAATTGCACATACATACCCCTAATTGTCCTACGGTACCC
1 TGAATTACACATACATGCCCCTGTTTGTACTTCGGTACCC
4420822 TTATATATAC
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
41 62 0.94
42 4 0.06
ACGTcount: A:0.23, C:0.31, G:0.14, T:0.32
Consensus pattern (41 bp):
TGAATTACACATACATGCCCCTGTTTGTACTTCGGTACCCC
Found at i:4426064 original size:45 final size:45
Alignment explanation
Indices: 4425996--4426089 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
4425986 AACAGATACT
* *
4425996 CGGTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGATTCAGCACATACCAACCACCTTACTAATCAATGATGTC
*
4426041 CGGTGGATTCAGCACATACCAACCACCTTACTAATCAATGATGTT
1 CGGTGGATTCAGCACATACCAACCACCTTACTAATCAATGATGTC
4426086 CGGT
1 CGGT
4426090 TCACATAGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 46 1.00
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (45 bp):
CGGTGGATTCAGCACATACCAACCACCTTACTAATCAATGATGTC
Found at i:4426154 original size:51 final size:50
Alignment explanation
Indices: 4426086--4426483 Score: 442
Period size: 51 Copynumber: 7.9 Consensus size: 50
4426076 CAATGATGTT
* * *
4426086 CGGTTCACATAGTAGCCTGCACATGGTACTACACATGTGACCATTACCATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * * * * *
4426137 TGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAACAATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * *
4426188 CGGTACCCATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
* * *
4426238 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACAATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * *
4426289 CGGTACCCATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
* * *
4426339 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGATCGAAACAATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* * * * *
4426390 CGGTACCCATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
4426440 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCAT
4426484 CACTTTCACT
Statistics
Matches: 282, Mismatches: 56, Indels: 18
0.79 0.16 0.05
Matches are distributed among these distances:
49 6 0.02
50 119 0.42
51 151 0.54
52 6 0.02
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.22
Consensus pattern (50 bp):
CGGTACACATAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:4426269 original size:101 final size:101
Alignment explanation
Indices: 4426093--4426479 Score: 686
Period size: 101 Copynumber: 3.8 Consensus size: 101
4426083 GTTCGGTTCA
* * * * * * *
4426093 CATAGTAGCCTGCACATGGTACTACACATGTGACCATTACCA-TCTGATACACGTAGTAGCCTGC
1 CATAGTAGCCTACACATAGTACTACACATGCGACC--TATCATTCCGGTACACATAGTAGCCTGC
4426157 ACATAGTACTACACACGTGATCGAAACAATCCGGTACC
64 ACATAGTACTACACACGTGATCGAAACAATCCGGTACC
4426195 CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCCGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCCGGTACACATAGTAGCCTGCAC
4426260 ATAGTACTACACACGTGATCGAAACAATCCGGTACC
66 ATAGTACTACACACGTGATCGAAACAATCCGGTACC
4426296 CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCCGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCCGGTACACATAGTAGCCTGCAC
4426361 ATAGTACTACACACGTGATCGAAACAATCCGGTACC
66 ATAGTACTACACACGTGATCGAAACAATCCGGTACC
4426397 CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCCGGTACACATAGTAGCCTGCAC
1 CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCCGGTACACATAGTAGCCTGCAC
4426462 ATAGTACTACACACGTGA
66 ATAGTACTACACACGTGA
4426480 CCATCACTTT
Statistics
Matches: 277, Mismatches: 7, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
100 4 0.01
101 241 0.87
102 32 0.12
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.22
Consensus pattern (101 bp):
CATAGTAGCCTACACATAGTACTACACATGCGACCTATCATTCCGGTACACATAGTAGCCTGCAC
ATAGTACTACACACGTGATCGAAACAATCCGGTACC
Found at i:4431156 original size:28 final size:28
Alignment explanation
Indices: 4431093--4431218 Score: 173
Period size: 28 Copynumber: 4.5 Consensus size: 28
4431083 ATATTAAGTC
*
4431093 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
4431120 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
4431148 CGTACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
4431176 TGCACACTTAGTGCTATACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
4431205 CGCACACTTAGTGC
1 CGCACACTTAGTGC
4431219 CAATCTCATG
Statistics
Matches: 87, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
27 22 0.25
28 47 0.54
29 18 0.21
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:4436836 original size:40 final size:40
Alignment explanation
Indices: 4436781--4436944 Score: 233
Period size: 40 Copynumber: 4.1 Consensus size: 40
4436771 TGGATGATAA
* * *
4436781 CCGGGCTAAGTCCCGAAGGCATTTGCGCTAGTGACTAGT-T
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-TAT
4436821 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
4436861 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* * *
4436901 CCGGGCTATGTCCCGAAGGCATTCGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
4436941 CCGG
1 CCGG
4436945 TTAAATCCTG
Statistics
Matches: 116, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
39 3 0.03
40 113 0.97
ACGTcount: A:0.21, C:0.25, G:0.29, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:4439260 original size:41 final size:40
Alignment explanation
Indices: 4439199--4439382 Score: 228
Period size: 41 Copynumber: 4.6 Consensus size: 40
4439189 TATTCGGATG
*
4439199 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* * * *
4439240 ATACCCGGGTTAAGTCCCGAAGGCATTTGCGCTAGTGACA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
4439280 ATATCCGGGCTAAGACCTGAAGGCATTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCA-TTTGTGCTAGTGACT
* *
4439321 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGATTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-GTGACT
* *
4439361 ATATCC-GGTTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
4439383 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
39 14 0.11
40 50 0.40
41 60 0.48
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:4439335 original size:81 final size:81
Alignment explanation
Indices: 4439199--4439349 Score: 266
Period size: 81 Copynumber: 1.9 Consensus size: 81
4439189 TATTCGGATG
*
4439199 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATACCCGGGTTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATACCCGGGCTAAGTCCCGAAGGC
4439264 ATTTGCGCTAGTGACA
66 ATTTGCGCTAGTGACA
* * *
4439280 ATATCCGGGCTAAGACCTGAAGGCATTTTGTGCTAGTGACTATATCCGGGCTAAGTCCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATACCCGGGCTAAGTCCCGAAGGC
4439345 ATTTG
66 ATTTG
4439350 TGCGATTTGC
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
81 66 1.00
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
ATATCCGGGCTAAGACCCGAAGGCACTTTGTGCTAGTGACTATACCCGGGCTAAGTCCCGAAGGC
ATTTGCGCTAGTGACA
Found at i:4442420 original size:34 final size:34
Alignment explanation
Indices: 4442376--4442449 Score: 112
Period size: 34 Copynumber: 2.2 Consensus size: 34
4442366 GCATTTTCTG
* *
4442376 ATACTGTTATTGTAATGGGCTAAAGCCTACACTA
1 ATACTATTATTGTAATGGGCTAAAGCCCACACTA
* *
4442410 ATACTATTATTGTAATGGGCTAAGGCCCACACTG
1 ATACTATTATTGTAATGGGCTAAAGCCCACACTA
4442444 ATACTA
1 ATACTA
4442450 GACAGTATCT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (34 bp):
ATACTATTATTGTAATGGGCTAAAGCCCACACTA
Found at i:4444023 original size:34 final size:33
Alignment explanation
Indices: 4443984--4444091 Score: 90
Period size: 34 Copynumber: 3.2 Consensus size: 33
4443974 AATATATGAT
*
4443984 AAGCATATCTTTTGCTACCGTATTGATTTATTAG
1 AAGCATAT-TTTTGCTACCGTATTGATCTATTAG
* ** * *
4444018 AAGCATATATATTGCTAATGTATTGATCTGTTAT
1 AAGCATAT-TTTTGCTACCGTATTGATCTATTAG
* * * * *
4444052 AAGCATGTTTCTTGCTACCGTCTTGGTCTGTTAT
1 AAGCATATTT-TTGCTACCGTATTGATCTATTAG
4444086 AAGCAT
1 AAGCAT
4444092 GTCATATTGC
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
33 1 0.02
34 59 0.98
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.43
Consensus pattern (33 bp):
AAGCATATTTTTGCTACCGTATTGATCTATTAG
Found at i:4455376 original size:36 final size:36
Alignment explanation
Indices: 4455329--4455401 Score: 112
Period size: 36 Copynumber: 2.0 Consensus size: 36
4455319 TAAAATAGGA
4455329 AAACTACTCCTAATT-GCCCTCTACTTCCTATAATAT
1 AAACTACTCCT-ATTCGCCCTCTACTTCCTATAATAT
* *
4455365 AAACTACTCCTATTCGCCTTCTACTTTCTATAATAT
1 AAACTACTCCTATTCGCCCTCTACTTCCTATAATAT
4455401 A
1 A
4455402 GAAAACTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
35 3 0.09
36 31 0.91
ACGTcount: A:0.30, C:0.29, G:0.03, T:0.38
Consensus pattern (36 bp):
AAACTACTCCTATTCGCCCTCTACTTCCTATAATAT
Found at i:4465501 original size:323 final size:323
Alignment explanation
Indices: 4464913--4465558 Score: 1292
Period size: 323 Copynumber: 2.0 Consensus size: 323
4464903 AATTTTTGAA
4464913 CCCTAATGGCTATTTTTTTAACCGTTAGAGGGTCCAACGCTAAAAAAAACGGTTAAAAAAATATA
1 CCCTAATGGCTATTTTTTTAACCGTTAGAGGGTCCAACGCTAAAAAAAACGGTTAAAAAAATATA
4464978 AAATCCCCCTCCTACTTTTCACACATATTTTCTTTACAATTTAGCAAAAAATCTCTACAATTTTA
66 AAATCCCCCTCCTACTTTTCACACATATTTTCTTTACAATTTAGCAAAAAATCTCTACAATTTTA
4465043 TCCTAAAACTTTCAAATTTTTCATTAAATTTCTCAAAGCTCTTTATAATTAGTTATATACTTTAA
131 TCCTAAAACTTTCAAATTTTTCATTAAATTTCTCAAAGCTCTTTATAATTAGTTATATACTTTAA
4465108 TTTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCAAAAATACTTGATCGTGTTAGCAATGAC
196 TTTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCAAAAATACTTGATCGTGTTAGCAATGAC
4465173 CGAGGGATTAATTCGTCTCGATCATAAATATATCTCTGTCGAACAAATGAAAATGGTAACGGT
261 CGAGGGATTAATTCGTCTCGATCATAAATATATCTCTGTCGAACAAATGAAAATGGTAACGGT
4465236 CCCTAATGGCTATTTTTTTAACCGTTAGAGGGTCCAACGCTAAAAAAAACGGTTAAAAAAATATA
1 CCCTAATGGCTATTTTTTTAACCGTTAGAGGGTCCAACGCTAAAAAAAACGGTTAAAAAAATATA
4465301 AAATCCCCCTCCTACTTTTCACACATATTTTCTTTACAATTTAGCAAAAAATCTCTACAATTTTA
66 AAATCCCCCTCCTACTTTTCACACATATTTTCTTTACAATTTAGCAAAAAATCTCTACAATTTTA
4465366 TCCTAAAACTTTCAAATTTTTCATTAAATTTCTCAAAGCTCTTTATAATTAGTTATATACTTTAA
131 TCCTAAAACTTTCAAATTTTTCATTAAATTTCTCAAAGCTCTTTATAATTAGTTATATACTTTAA
4465431 TTTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCAAAAATACTTGATCGTGTTAGCAATGAC
196 TTTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCAAAAATACTTGATCGTGTTAGCAATGAC
4465496 CGAGGGATTAATTCGTCTCGATCATAAATATATCTCTGTCGAACAAATGAAAATGGTAACGGT
261 CGAGGGATTAATTCGTCTCGATCATAAATATATCTCTGTCGAACAAATGAAAATGGTAACGGT
4465559 TTATTTTCAA
Statistics
Matches: 323, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
323 323 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (323 bp):
CCCTAATGGCTATTTTTTTAACCGTTAGAGGGTCCAACGCTAAAAAAAACGGTTAAAAAAATATA
AAATCCCCCTCCTACTTTTCACACATATTTTCTTTACAATTTAGCAAAAAATCTCTACAATTTTA
TCCTAAAACTTTCAAATTTTTCATTAAATTTCTCAAAGCTCTTTATAATTAGTTATATACTTTAA
TTTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCAAAAATACTTGATCGTGTTAGCAATGAC
CGAGGGATTAATTCGTCTCGATCATAAATATATCTCTGTCGAACAAATGAAAATGGTAACGGT
Found at i:4466559 original size:7 final size:7
Alignment explanation
Indices: 4466547--4466571 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
4466537 AGTCGTTTCA
4466547 TATTTAG
1 TATTTAG
4466554 TATTTAG
1 TATTTAG
4466561 TATTTAG
1 TATTTAG
4466568 TATT
1 TATT
4466572 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:4467177 original size:18 final size:18
Alignment explanation
Indices: 4467154--4467191 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
4467144 TGCCAGGTGC
*
4467154 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
4467172 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
4467190 GT
1 GT
4467192 TTCATTGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:4470931 original size:127 final size:126
Alignment explanation
Indices: 4470702--4470951 Score: 385
Period size: 127 Copynumber: 2.0 Consensus size: 126
4470692 GGCCAATCAT
* * * *
4470702 GAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGACATTTTGCTAACATTGCATC
1 GAACTACTGTAGAAAAAGAGCATCCACGTAGGACCTTTTTTCAGACATTTTGCTAACAGTGCATC
*
4470767 CTGCTTGAAACATTTTTGACACTATTTGTTCAGAAACGTCTTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAACATTTTTGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAG
** *
4470828 GAACTACTGTAGAAAAAGAGCATCCACGTAGGACCTTTTATTTTGTA-ATTTTGCTGACAGTGCA
1 GAACTACTGTAGAAAAAGAGCATCCACGTAGGACCTTTT-TTCAG-ACATTTTGCTAACAGTGCA
* *
4470892 TCCTGCTTGAAGCATTTTTTACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTT
64 TCCTGCTTGAAACATTTTTGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTT
4470952 TAGGGTACAA
Statistics
Matches: 112, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
126 36 0.32
127 75 0.67
128 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCATCCACGTAGGACCTTTTTTCAGACATTTTGCTAACAGTGCATC
CTGCTTGAAACATTTTTGACACTATTTGTTCAAAAACGTCTTCTCAAAATTATTTTTTCAG
Found at i:4471131 original size:34 final size:34
Alignment explanation
Indices: 4471058--4471122 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
4471048 ACCCTAATTT
* * *
4471058 AATTTATTTAAAACCCTAGAACTCTAATTTACTC
1 AATTTATTAAAAACCATAGAACCCTAATTTACTC
4471092 AATTTATCTAAAAACCATA-AACCCTAATTTA
1 AATTTAT-TAAAAACCATAGAACCCTAATTTA
4471123 ACTTATTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
34 18 0.67
35 9 0.33
ACGTcount: A:0.43, C:0.20, G:0.02, T:0.35
Consensus pattern (34 bp):
AATTTATTAAAAACCATAGAACCCTAATTTACTC
Found at i:4471176 original size:26 final size:26
Alignment explanation
Indices: 4471147--4471232 Score: 101
Period size: 26 Copynumber: 3.5 Consensus size: 26
4471137 CTAATTTATT
4471147 TAATTTATTTAAAACCTTAAAAACCC
1 TAATTTATTTAAAACCTTAAAAACCC
*
4471173 TAATTTATTTAAAATCC-T---AA-CT
1 TAATTTATTTAAAA-CCTTAAAAACCC
*
4471195 TAATTTATTTAAAACTTTAAAAACCC
1 TAATTTATTTAAAACCTTAAAAACCC
*
4471221 TAATTTACTTAA
1 TAATTTATTTAA
4471233 TTTATTTAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
21 1 0.02
22 16 0.32
23 2 0.04
25 2 0.04
26 27 0.54
27 2 0.04
ACGTcount: A:0.44, C:0.15, G:0.00, T:0.41
Consensus pattern (26 bp):
TAATTTATTTAAAACCTTAAAAACCC
Found at i:4475461 original size:37 final size:37
Alignment explanation
Indices: 4475411--4475489 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
4475401 TTATTACGAA
* * *
4475411 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
4475448 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
4475485 GTCTT
1 GTCTT
4475490 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:4475733 original size:49 final size:49
Alignment explanation
Indices: 4475608--4476499 Score: 1684
Period size: 49 Copynumber: 18.3 Consensus size: 49
4475598 CCCTTCGGGA
* * * * *
4475608 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
4475655 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4475702 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4475751 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4475800 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4475849 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4475898 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4475947 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4475996 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4476045 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4476094 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4476143 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4476192 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4476241 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4476290 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4476339 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4476388 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
4476437 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
4476486 CTTATCTCATATAT
1 CTTATCACATATAT
4476500 GCATGTTCAC
Statistics
Matches: 831, Mismatches: 10, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
46 1 0.00
47 43 0.05
49 787 0.95
ACGTcount: A:0.30, C:0.29, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:4495447 original size:20 final size:20
Alignment explanation
Indices: 4495424--4495471 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
4495414 TCCCAGGTCG
*
4495424 ATTTAGCTCACATGAGCTTA
1 ATTTAGCTCACATGAGCTCA
***
4495444 ATTTAGCTCGTTTGAGCTCA
1 ATTTAGCTCACATGAGCTCA
4495464 ATTTAGCT
1 ATTTAGCT
4495472 TACTTTAGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (20 bp):
ATTTAGCTCACATGAGCTCA
Found at i:4495463 original size:30 final size:30
Alignment explanation
Indices: 4495428--4495491 Score: 94
Period size: 30 Copynumber: 2.1 Consensus size: 30
4495418 AGGTCGATTT
4495428 AGCTCACA-TGAGCTTAATTTAGCTCGTTTG
1 AGCTCA-ATTGAGCTTAATTTAGCTCGTTTG
* *
4495458 AGCTCAATTTAGCTTACTTTAGCTCGTTTG
1 AGCTCAATTGAGCTTAATTTAGCTCGTTTG
4495488 AGCT
1 AGCT
4495492 TGGCTTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
29 1 0.03
30 30 0.97
ACGTcount: A:0.22, C:0.20, G:0.19, T:0.39
Consensus pattern (30 bp):
AGCTCAATTGAGCTTAATTTAGCTCGTTTG
Found at i:4499604 original size:48 final size:48
Alignment explanation
Indices: 4499551--4499708 Score: 226
Period size: 48 Copynumber: 3.3 Consensus size: 48
4499541 AGGAGTTATC
* * * *
4499551 ACTTACTTATTTCAATACATAACATATATCACATACAAAGTTATTTTA
1 ACTTACTCATTTCAATACATAACATATATCACATACAGAGTCATATTA
* * *
4499599 ACTTACTCATTTCAATACATAACAGATATCACATGCAGGGTCATATTA
1 ACTTACTCATTTCAATACATAACATATATCACATACAGAGTCATATTA
* *
4499647 ACTTACTCATTTCAGTACATAACATATATCACATAGAGAGTCATATTA
1 ACTTACTCATTTCAATACATAACATATATCACATACAGAGTCATATTA
*
4499695 ACTTACTCTTTTCA
1 ACTTACTCATTTCA
4499709 TATCCTTCCT
Statistics
Matches: 97, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 97 1.00
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.36
Consensus pattern (48 bp):
ACTTACTCATTTCAATACATAACATATATCACATACAGAGTCATATTA
Found at i:4510600 original size:28 final size:28
Alignment explanation
Indices: 4510568--4510625 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
4510558 TTAATTATAA
4510568 GACAATTTTTTTCTTCATTTATATGATT
1 GACAATTTTTTTCTTCATTTATATGATT
4510596 GACAATTTTTTTCTTCATTTATATGATT
1 GACAATTTTTTTCTTCATTTATATGATT
4510624 GA
1 GA
4510626 TTTTAATTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.26, C:0.10, G:0.09, T:0.55
Consensus pattern (28 bp):
GACAATTTTTTTCTTCATTTATATGATT
Found at i:4511781 original size:21 final size:21
Alignment explanation
Indices: 4511731--4511781 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 21
4511721 ATAGAAGTTG
4511731 TGATAATTATTATACATTTAA
1 TGATAATTATTATACATTTAA
*
4511752 --A-AATAATTATA-ATTTAA
1 TGATAATTATTATACATTTAA
4511769 TTGATAATTATTA
1 -TGATAATTATTA
4511782 GTTAAAAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 8
0.71 0.06 0.24
Matches are distributed among these distances:
17 6 0.25
18 9 0.38
19 1 0.04
20 1 0.04
21 7 0.29
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (21 bp):
TGATAATTATTATACATTTAA
Found at i:4512430 original size:90 final size:86
Alignment explanation
Indices: 4512343--4512591 Score: 270
Period size: 90 Copynumber: 2.7 Consensus size: 86
4512333 AAAAAAAAGG
4512343 AAGCAATTAAGCCC-CTATTCTTTTTACACTCAATTAGGTACTTGAACTTTCAAAATGCATCAAA
1 AAGCAATTAAGCCCTCTATT-TTTTT-CACTCAATT-GGTACTTGAACTTTC-AAATGCATCAAA
4512407 AAGACCCTCAAACT-TTTTAAAAAA
62 AAGACCCTCAAACTCTTTTAAAAAA
*
4512431 ATGCAATTAAGCCACTGCTTATTTTTTTCACTCAATTGGGTACTTGAACTTTCGAAATGCATCAA
1 AAGCAATTAAGCC-CT-C-TATTTTTTTCACTCAATT-GGTACTTGAACTTTC-AAATGCATCAA
* * * *
4512496 AAAGTCCTTCAAACTCTTTTCAGAAA
61 AAAGACCCTCAAACTCTTTTAAAAAA
* *
4512522 AAGCAATTAAGCCCTTTAAATTTTTTTTTGCACTTAATTGGATACTTGAACTATT-AAATGCATC
1 AAGCAATTAAGCCCTCT--A--TTTTTTT-CACTCAATTGG-TACTTGAACT-TTCAAATGCATC
4512586 AAAAAG
59 AAAAAG
4512592 GTCCTTTAAC
Statistics
Matches: 139, Mismatches: 10, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
88 13 0.09
89 1 0.01
90 51 0.37
91 26 0.19
92 28 0.20
93 18 0.13
94 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.34
Consensus pattern (86 bp):
AAGCAATTAAGCCCTCTATTTTTTTCACTCAATTGGTACTTGAACTTTCAAATGCATCAAAAAGA
CCCTCAAACTCTTTTAAAAAA
Found at i:4512756 original size:20 final size:21
Alignment explanation
Indices: 4512710--4512768 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
4512700 CAATAAAAGT
* *
4512710 TATAAAAATATTAAATATTAA
1 TATAAAAATTTTAAAAATTAA
*
4512731 TATAAAAATTTTAAAAATTTA
1 TATAAAAATTTTAAAAATTAA
*
4512752 T-TAAAAATTCTAAAAAT
1 TATAAAAATTTTAAAAAT
4512769 CATAAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 15 0.44
21 19 0.56
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (21 bp):
TATAAAAATTTTAAAAATTAA
Found at i:4512782 original size:17 final size:17
Alignment explanation
Indices: 4512764--4512795 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
4512754 AAAAATTCTA
4512764 AAAAT-CATAAAAAAAT
1 AAAATACATAAAAAAAT
4512780 AAAATACATAAAAAAA
1 AAAATACATAAAAAAA
4512796 ACCCTTAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.78, C:0.06, G:0.00, T:0.16
Consensus pattern (17 bp):
AAAATACATAAAAAAAT
Found at i:4512999 original size:10 final size:9
Alignment explanation
Indices: 4512985--4513069 Score: 53
Period size: 11 Copynumber: 8.6 Consensus size: 9
4512975 TTTTTATGGA
4512985 TTTTATATT
1 TTTTATATT
*
4512994 TCTTTACATT
1 T-TTTATATT
4513004 TTTTATAATT
1 TTTTAT-ATT
*
4513014 TTCTTACAATT
1 TT-TTA-TATT
* *
4513025 TTATAAATT
1 TTTTATATT
4513034 TTTATATATTT
1 TTT-TATA-TT
*
4513045 TTTTCTAATTT
1 TTTTAT-A-TT
4513056 TTTTATATT
1 TTTTATATT
4513065 TTTTA
1 TTTTA
4513070 CGATTTTATA
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
9 18 0.30
10 21 0.34
11 22 0.36
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTTATATT
Found at i:4513018 original size:21 final size:20
Alignment explanation
Indices: 4512985--4513069 Score: 75
Period size: 20 Copynumber: 4.2 Consensus size: 20
4512975 TTTTTATGGA
*
4512985 TTTTAT-ATTTCTTTACATT
1 TTTTATAATTTTTTTACATT
* *
4513004 TTTTATAATTTTCTTACA-A
1 TTTTATAATTTTTTTACATT
* *
4513023 TTTTATAAATTTTTATATATTT
1 TTTTAT-AATTTTTTTACA-TT
* *
4513045 TTTTCTAATTTTTTTATATT
1 TTTTATAATTTTTTTACATT
4513065 TTTTA
1 TTTTA
4513070 CGATTTTATA
Statistics
Matches: 52, Mismatches: 10, Indels: 7
0.75 0.14 0.10
Matches are distributed among these distances:
19 12 0.23
20 24 0.46
21 11 0.21
22 5 0.10
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTATAATTTTTTTACATT
Found at i:4513066 original size:40 final size:41
Alignment explanation
Indices: 4513002--4513096 Score: 113
Period size: 40 Copynumber: 2.3 Consensus size: 41
4512992 TTTCTTTACA
*
4513002 TTTTTTATAATTTTCTTACAATTTTATA-AATTTTTATATAT
1 TTTTTTCTAATTTTCTTACAATTTTATACAA-TTTTATATAT
* * * * *
4513043 TTTTTTCTAATTTTTTTA-TATTTTTTACGATTTTATATTT
1 TTTTTTCTAATTTTCTTACAATTTTATACAATTTTATATAT
4513083 TTTTTTCTAATTTT
1 TTTTTTCTAATTTT
4513097 AAATATTTTT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
40 30 0.64
41 17 0.36
ACGTcount: A:0.24, C:0.05, G:0.01, T:0.69
Consensus pattern (41 bp):
TTTTTTCTAATTTTCTTACAATTTTATACAATTTTATATAT
Found at i:4513086 original size:10 final size:10
Alignment explanation
Indices: 4512985--4513068 Score: 62
Period size: 10 Copynumber: 8.3 Consensus size: 10
4512975 TTTTTATGGA
4512985 TTTTATATTT
1 TTTTATATTT
* *
4512995 CTTTACA-TT
1 TTTTATATTT
4513004 TTTTATAATTT
1 TTTTAT-ATTT
* * *
4513015 TCTTACAATT
1 TTTTATATTT
* *
4513025 TTATAAATTT
1 TTTTATATTT
*
4513035 TTATATATTT
1 TTTTATATTT
*
4513045 TTTTCTAATTT
1 TTTTAT-ATTT
4513056 TTTTATATTT
1 TTTTATATTT
4513066 TTT
1 TTT
4513069 ACGATTTTAT
Statistics
Matches: 56, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
9 6 0.11
10 35 0.62
11 15 0.27
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTATATTT
Found at i:4513105 original size:20 final size:20
Alignment explanation
Indices: 4513033--4513106 Score: 87
Period size: 21 Copynumber: 3.7 Consensus size: 20
4513023 TTTTATAAAT
4513033 TTTTATATATTTTTTTCTAA
1 TTTTATATATTTTTTTCTAA
* * *
4513053 TTTTTTTATATTTTTTAC-GA
1 -TTTTATATATTTTTTTCTAA
*
4513073 TTTTATATTTTTTTTTCTAA
1 TTTTATATATTTTTTTCTAA
*
4513093 TTTTAAATATTTTT
1 TTTTATATATTTTT
4513107 ATAGTTTTTT
Statistics
Matches: 43, Mismatches: 9, Indels: 3
0.78 0.16 0.05
Matches are distributed among these distances:
19 14 0.33
20 14 0.33
21 15 0.35
ACGTcount: A:0.23, C:0.04, G:0.01, T:0.72
Consensus pattern (20 bp):
TTTTATATATTTTTTTCTAA
Found at i:4513129 original size:31 final size:30
Alignment explanation
Indices: 4513073--4513140 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 30
4513063 TTTTTTACGA
* *
4513073 TTTTATATTTTTTTTTCTAATTTTAA-ATAT
1 TTTTATATTTTTTTTTCAAAATTTAATA-AT
4513103 TTTTATAGTTTTTTTATT-AAAATTTAATAAT
1 TTTTATA-TTTTTTT-TTCAAAATTTAATAAT
4513134 TTTTATA
1 TTTTATA
4513141 ACTTTTACTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
30 7 0.21
31 23 0.70
32 3 0.09
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (30 bp):
TTTTATATTTTTTTTTCAAAATTTAATAAT
Found at i:4520134 original size:75 final size:75
Alignment explanation
Indices: 4519970--4520466 Score: 811
Period size: 75 Copynumber: 6.6 Consensus size: 75
4519960 GATTCAACAG
* * * * *
4519970 TTAGCAACCACCAGTGATTCGGGGAATCAGCACCTAGCAACCCCTTTCACATTCAAAGATACGGT
1 TTAGCAACCACCAATGATTCGGGGAATCATCACTTAGCAACCCCTTTCACATT-TAAGATATGGT
*
4520035 GGAATCAGCAC
65 GGGATCAGCAC
*
4520046 TTAGCAACCACCAATGATTAGGGGAATCATCACTTAGCAACCCCTTTCACATTTAAGATATGGTG
1 TTAGCAACCACCAATGATTCGGGGAATCATCACTTAGCAACCCCTTTCACATTTAAGATATGGTG
4520111 GGATCAGCAC
66 GGATCAGCAC
*
4520121 TTAGCAACCACCAATGATTAGGGGAATCATCACTTAGCAACCCCTTTCACATTTAAGATATGGTG
1 TTAGCAACCACCAATGATTCGGGGAATCATCACTTAGCAACCCCTTTCACATTTAAGATATGGTG
4520186 GGATCAGCAC
66 GGATCAGCAC
4520196 TTAGCAACCACCAATGATTCGGGGAATCAGT-ACTTAGCAACCCCTTTCACATTTAAGATATGGT
1 TTAGCAACCACCAATGATTCGGGGAATCA-TCACTTAGCAACCCCTTTCACATTTAAGATATGGT
4520260 GGGATCAGCAC
65 GGGATCAGCAC
4520271 TTAGCAACCACCAATGATTCGGGGAATCAGT-ACTTAGCAACCCCTTTCACATTTAAGATATGGT
1 TTAGCAACCACCAATGATTCGGGGAATCA-TCACTTAGCAACCCCTTTCACATTTAAGATATGGT
4520335 GGGATCAGCAC
65 GGGATCAGCAC
*
4520346 TTAGCAACCACCAATGATTCGGGGAATCAGT-ACTTAGCAACCCCTTTCACATTTAAGATACGGT
1 TTAGCAACCACCAATGATTCGGGGAATCA-TCACTTAGCAACCCCTTTCACATTTAAGATATGGT
* *
4520410 GGAATCAGCAT
65 GGGATCAGCAC
* * *
4520421 TTAGCAATCACCAATGATTCGGGGAATCAGCACTTAGCAATCCCTT
1 TTAGCAACCACCAATGATTCGGGGAATCATCACTTAGCAACCCCTT
4520467 AGAGGAATCA
Statistics
Matches: 405, Mismatches: 14, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
75 355 0.88
76 50 0.12
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.25
Consensus pattern (75 bp):
TTAGCAACCACCAATGATTCGGGGAATCATCACTTAGCAACCCCTTTCACATTTAAGATATGGTG
GGATCAGCAC
Found at i:4527124 original size:13 final size:13
Alignment explanation
Indices: 4527102--4527134 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
4527092 AAGTTTTCGA
4527102 ACGAAATTTTT-T
1 ACGAAATTTTTCT
4527114 ACGAAATTTTTCT
1 ACGAAATTTTTCT
*
4527127 ATGAAATT
1 ACGAAATT
4527135 GTAGACCATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (13 bp):
ACGAAATTTTTCT
Found at i:4528628 original size:11 final size:11
Alignment explanation
Indices: 4528612--4528637 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
4528602 AATATATATG
4528612 TTTTATTTTTA
1 TTTTATTTTTA
4528623 TTTTATTTTTA
1 TTTTATTTTTA
4528634 TTTT
1 TTTT
4528638 TTGTACAATC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:4528999 original size:16 final size:16
Alignment explanation
Indices: 4528978--4529029 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
4528968 TTTGGTTCGC
*
4528978 TGTATTAGATTAGAGG
1 TGTATTGGATTAGAGG
*
4528994 TGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
4529010 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
4529026 TGTA
1 TGTA
4529030 ATAGCAAATC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.29, C:0.00, G:0.33, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:4529285 original size:16 final size:16
Alignment explanation
Indices: 4529245--4529299 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
4529235 TTAATCATAT
*
4529245 TTAAACATA-ATTTTTA
1 TTAAA-ATATATTTTAA
4529261 TT-AAATATATTTTAA
1 TTAAAATATATTTTAA
4529276 TTAAAATATATAATTTAA
1 TTAAAATATAT--TTTAA
4529294 -TAAAAT
1 TTAAAAT
4529300 TCTTAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 3 0.09
15 10 0.29
16 10 0.29
17 6 0.18
18 5 0.15
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAAATATATTTTAA
Found at i:4529292 original size:18 final size:17
Alignment explanation
Indices: 4529265--4529299 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
4529255 TTTTTATTAA
*
4529265 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
4529283 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
4529300 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:4530824 original size:19 final size:19
Alignment explanation
Indices: 4530800--4530836 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
4530790 ATAAAATATT
4530800 ATCGTTCAGGTACATATAC
1 ATCGTTCAGGTACATATAC
*
4530819 ATCGTTCAGGTGCATATA
1 ATCGTTCAGGTACATATA
4530837 GAGGTCATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32
Consensus pattern (19 bp):
ATCGTTCAGGTACATATAC
Found at i:4531897 original size:15 final size:15
Alignment explanation
Indices: 4531873--4531902 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
4531863 GGAGGGTAAA
*
4531873 ACAGAGAGCAAATCG
1 ACAGAAAGCAAATCG
4531888 ACAGAAAGCAAATCG
1 ACAGAAAGCAAATCG
4531903 GCCAAAAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.20, G:0.23, T:0.07
Consensus pattern (15 bp):
ACAGAAAGCAAATCG
Found at i:4532265 original size:28 final size:28
Alignment explanation
Indices: 4532233--4532332 Score: 175
Period size: 28 Copynumber: 3.6 Consensus size: 28
4532223 CTATAATCAC
4532233 TTAATATTTATATTACAATTATTTTCAA
1 TTAATATTTATATTACAATTATTTTCAA
*
4532261 TTAATATTTATATTACAATTATTTTAAA
1 TTAATATTTATATTACAATTATTTTCAA
4532289 TTAATATTTATATTACAATTATTTTCAA
1 TTAATATTTATATTACAATTATTTTCAA
*
4532317 -AAATATTTATATTACA
1 TTAATATTTATATTACA
4532333 CTAAGGCATT
Statistics
Matches: 69, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 15 0.22
28 54 0.78
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (28 bp):
TTAATATTTATATTACAATTATTTTCAA
Found at i:4535662 original size:27 final size:25
Alignment explanation
Indices: 4535632--4535681 Score: 64
Period size: 27 Copynumber: 1.9 Consensus size: 25
4535622 TTATATATAC
*
4535632 TAAATAATAAAATAATAAAATATTATT
1 TAAAAAATAAAAT--TAAAATATTATT
*
4535659 TAAAAAATCAAATTAAAATATTA
1 TAAAAAATAAAATTAAAATATTA
4535682 ATAAACTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
27 11 0.52
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
TAAAAAATAAAATTAAAATATTATT
Found at i:4540908 original size:38 final size:38
Alignment explanation
Indices: 4540854--4540929 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
4540844 AGCCTTCGGC
4540854 GTTCCTGTAACACCCCGAACTCGAGGCCGTCGCCGGAG
1 GTTCCTGTAACACCCCGAACTCGAGGCCGTCGCCGGAG
*
4540892 GTTCCTGTAACCCCCCGAACTCGAGGCCGTCGCCGGAG
1 GTTCCTGTAACACCCCGAACTCGAGGCCGTCGCCGGAG
4540930 TCGAACACGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.17, C:0.38, G:0.29, T:0.16
Consensus pattern (38 bp):
GTTCCTGTAACACCCCGAACTCGAGGCCGTCGCCGGAG
Found at i:4547216 original size:40 final size:40
Alignment explanation
Indices: 4546186--4547213 Score: 1867
Period size: 40 Copynumber: 25.7 Consensus size: 40
4546176 ACACGTCACC
* * * * * *
4546186 AGCATGATTGCTCTTCGGGATTTAGCACGGATATATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
* * * *
4546226 AGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
* *
4546266 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
* *
4546306 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
* *
4546346 AGCATGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546386 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546426 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546466 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546506 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546546 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546586 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546626 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546666 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546706 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546746 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546786 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546826 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546866 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546906 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546946 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4546986 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4547026 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4547066 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
4547106 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
* * *
4547146 AGCATGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
* *
4547186 AGCACGAACGCTCTTCGGGACTTAGCCC
1 AGCATGAATGCTCTTCGGGACTTAGCCC
4547214 GGACATCATT
Statistics
Matches: 973, Mismatches: 15, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 973 1.00
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
AGCATGAATGCTCTTCGGGACTTAGCCCAGATACATCGCT
Found at i:4547561 original size:29 final size:29
Alignment explanation
Indices: 4547522--4547600 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
4547512 CTTAATAATC
*
4547522 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
4547552 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
4547581 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
4547601 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:4555823 original size:7 final size:8
Alignment explanation
Indices: 4555806--4555839 Score: 54
Period size: 7 Copynumber: 4.5 Consensus size: 8
4555796 TTTTAGTCAA
4555806 AAAAATGG
1 AAAAATGG
4555814 AAAAAT-G
1 AAAAATGG
4555821 AAAAAT-G
1 AAAAATGG
4555828 AAAAATGG
1 AAAAATGG
4555836 AAAA
1 AAAA
4555840 GTAAAATGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 14 0.56
8 11 0.44
ACGTcount: A:0.71, C:0.00, G:0.18, T:0.12
Consensus pattern (8 bp):
AAAAATGG
Found at i:4555845 original size:13 final size:14
Alignment explanation
Indices: 4555807--4555849 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
4555797 TTTAGTCAAA
*
4555807 AAAATGGAAAAATGA
1 AAAAT-GAAAAATGG
4555822 AAAATGAAAAATGG
1 AAAATGAAAAATGG
*
4555836 AAAA-GTAAAATGG
1 AAAATGAAAAATGG
4555849 A
1 A
4555850 GAGGCTAAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
13 9 0.35
14 12 0.46
15 5 0.19
ACGTcount: A:0.65, C:0.00, G:0.21, T:0.14
Consensus pattern (14 bp):
AAAATGAAAAATGG
Found at i:4557265 original size:44 final size:44
Alignment explanation
Indices: 4557206--4557492 Score: 210
Period size: 44 Copynumber: 6.5 Consensus size: 44
4557196 AGAATTTCAG
*
4557206 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * * * ** *
4557250 ATCCTATCTCGCTGAGATTAAAGTGGAGCGGATT-AAAATAAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGTA
* * * * * * *
4557294 ATTTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGCATC-A--A
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGTA
* * ** * * *
4557335 GTCTTATCTCCTTGAGATTACAGTGGAATAGATCGAAG-AATTTCAA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT--A
* *
4557381 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCTAGAA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * *
4557425 ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* *
4557469 ATCCTATTTCCCTGAGATTACAGT
1 ATCTTATCTCCCTGAGATTACAGT
4557493 CGAACGGATT
Statistics
Matches: 186, Mismatches: 45, Indels: 24
0.73 0.18 0.09
Matches are distributed among these distances:
41 29 0.16
42 2 0.01
43 4 0.02
44 114 0.61
45 3 0.02
46 33 0.18
47 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
Found at i:4557503 original size:219 final size:219
Alignment explanation
Indices: 4557206--4557605 Score: 649
Period size: 219 Copynumber: 1.8 Consensus size: 219
4557196 AGAATTTCAG
* * *
4557206 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCGCTGAGATTAA
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTAA
* * * * *
4557271 AGTGGAGCGGATTAAAATAAAGGATTTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAAG
66 AGTCGAACGGATTAAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATAGCATCAAG
* * *
4557336 TCTTATCTCCTTGAGATTACA-GTGGAATAGATCGAAGAATTTCAAATCTTATCTCCCTGAGGTT
131 TCTTATCTCCCTGAGATTACAGGT-GAATAGACCAAAGAATTTCAAATCTTATCTCCCTGAGGTT
4557400 ACAGTGGAGCAGATTGAAGCTAGAA
195 ACAGTGGAGCAGATTGAAGCTAGAA
* *
4557425 ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATTTCCCTGAGATTAC
1 ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTAA
* *
4557490 AGTCGAACGGATTAAAATAAAGGATATTGTCTCTCTGAAATTACAGTAGAGTAGATAGCATCAGG
66 AGTCGAACGGATTAAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATAGCATCAAG
4557555 TCTTATCTCCCTGAGATTACAGGTGAATAGACCAAAGAATTTCAAATCTTA
131 TCTTATCTCCCTGAGATTACAGGTGAATAGACCAAAGAATTTCAAATCTTA
4557606 CTTCCTAGGC
Statistics
Matches: 165, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
219 163 0.99
220 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (219 bp):
ATCTTATCTCCCTGAGATTACAGCGGAGCAAATTGAAGCCAGTAATCCTATCTCCCTGAGATTAA
AGTCGAACGGATTAAAATAAAGGATATTATCTCTCTGAAATTACAGTAGAGTAGATAGCATCAAG
TCTTATCTCCCTGAGATTACAGGTGAATAGACCAAAGAATTTCAAATCTTATCTCCCTGAGGTTA
CAGTGGAGCAGATTGAAGCTAGAA
Found at i:4557774 original size:100 final size:100
Alignment explanation
Indices: 4557599--4559189 Score: 1771
Period size: 100 Copynumber: 15.9 Consensus size: 100
4557589 AAGAATTTCA
* *
4557599 AATCTTACTT-CCTAGGCGATGCAGTGGAACAGATTAAATCCACATCGGTGAATCTTGCTTCCCC
1 AATCTTACTTCCCT-GGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
* *
4557663 GACATTGCAGTTAAAAAGATTAAAGCTACAGCAGCG
65 GACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * ** * *
4557699 AATCTTACTCCCCAGGCGATGCAGTGGAATAGATTAAAACCACATCGGTGAATCTTGCTTCCTCG
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* * * * *
4557764 ACATTACAGTTAAAAAGATTAAAGCTACAACAGTG
66 ACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * * * * *
4557799 AATCTTACTCCCCAGGTGATGCAGTGGAACAGATTAAAGCCACATCAGTGAATCTTACTTCCCCA
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* * *
4557864 ACATTGCAGTTAAAAAGATTAAAGCTACAACAGCG
66 ACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * * *
4557899 AATCTTACTGCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGTTTCCCC-
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* * **** *
4557963 ACGATTGTAGTTAAAAAGATTAAAGCTACAATAACA
66 AC-ATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * * * *
4557999 AATCTTACTCCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGTTTCCCCA
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* * **** *
4558064 ACATTGTAGTTAAAAAGATTAAAGCTACAATAACA
66 ACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * * *
4558099 AATCTTACTCCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACATCGGTGAATCTTGCTTCCCTG
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* * *
4558164 ACATTGCTGTTAAAAAGACTAAAGCCACAGTGGCG
66 ACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * ** *
4558199 AGTGC-TACTTCCCTGGCGGTGCGGTGGAATAGATTAAAGCCACATCGATGAATCTTGCTTCCCC
1 AAT-CTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCC
* * *
4558263 GACATTACAGTTAAAAAAATTAAAGCCACAGCGACG
65 GACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* ** * * *
4558299 AATCCTACTTCCCTGGCGGCGCAGTGGAGCAGATTAAGGCCACGA-CGGCGTATCTTGCTTCCCC
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCC
* * * *
4558363 GATATTGCAGTTAAAAAGACTAAAGCCATAGCGGCA
65 GACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * *
4558399 AATCCTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTCGCTTCCCTG
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
* *
4558464 ACATTGCAGTTAAAAAGATTAAAGCCACATCGGCT
66 ACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * *
4558499 AATCTTACTTCCCTGGCGATACAGTAGAGCAGATTAAACCCACGAT-GGTGTATCTTGCTTCCCC
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCC
*
4558563 GACATTGCAGTTAAAAAGATTAAAGCCACATCGGCG
65 GACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* ** * * *
4558599 AATCTTACTTCCCTGGCGATACAGAAGAGCAGATTAAAGCCACGA-CAGCGTATCTTGCTTCCCC
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCC
* * *
4558663 GACATTGCAATTAAAAAAGACTAAAGCCACAGTGGCG
65 GACATTGCAGTT-AAAAAGATTAAAGCCACAGCGGCG
* * * * * * *
4558700 AGTGTTACTTCCTTGGCGATGCAGTAGAGCAGATTAAGGCCACGA-CGGCGTATCTTGCTTCCCC
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCC
* *
4558764 GACATTGCAGTTAAAAAGACTAAAGCCACAGCGGTG
65 GACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * * *
4558800 AGTGTTACTTCCCTGGAGATGCAGTGGAGCAGATTAAAGCCACAAT-GGCGTATCTTGCTTCCCC
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCC
* *
4558864 GACATTGCAGTTAAAAAGACTAAAGCCACAGCGGTG
65 GACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * * *
4558900 AGTGTTACTTCCCTGGAGATGCAGTGGAGCAGATTAAAGCCACAAT-GGCGTATCTTGCTTCCCC
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCC
* *
4558964 GACATTGCAGTTAAAAAGACTAAAGCCACAGCGGTG
65 GACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * * *
4559000 AGTGTTACTTCCCTGGAGATGCAGTGGAGCAGATTAAAGCCACAAT-GGCGTATCTTGCTTCCCC
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCAC-ATCGGTGAATCTTGCTTCCCC
* **
4559064 GACATTGCAGTTAAAAAGACTAAAGCCACAGCATCG
65 GACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
* * * * * * *
4559100 AGTGTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCTACAACAGCGAATCTTGCTTCCCCA
1 AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
** **
4559165 ACATCACAGTTAAGCAGATTAAAGC
66 ACATTGCAGTTAAAAAGATTAAAGC
4559190 TACAAGGTAC
Statistics
Matches: 1354, Mismatches: 125, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
99 5 0.00
100 1252 0.92
101 97 0.07
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.23
Consensus pattern (100 bp):
AATCTTACTTCCCTGGCGATGCAGTGGAGCAGATTAAAGCCACATCGGTGAATCTTGCTTCCCCG
ACATTGCAGTTAAAAAGATTAAAGCCACAGCGGCG
Found at i:4559111 original size:50 final size:50
Alignment explanation
Indices: 4558757--4559112 Score: 202
Period size: 50 Copynumber: 7.1 Consensus size: 50
4558747 GCGTATCTTG
*
4558757 CTTCCCCGACATTGCAGTTAAAAAGACTAAAGCCACAGCGGT-GAGTGTTA
1 CTTCCCCGACATTGCAGTTAAAAAGACTAAAGCCACAGC-ATCGAGTGTTA
* * ** ** * * *
4558807 CTTCCCTGGAGA-TGCAGTGGAGCAGATTAAAGCCACA--ATGGCGTA-TCTTG
1 CTTCCC-CGACATTGCAGTTAAAAAGACTAAAGCCACAGCAT--CG-AGTGTTA
*
4558857 CTTCCCCGACATTGCAGTTAAAAAGACTAAAGCCACAGCGGT-GAGTGTTA
1 CTTCCCCGACATTGCAGTTAAAAAGACTAAAGCCACAGC-ATCGAGTGTTA
* * ** ** * * *
4558907 CTTCCCTGGAGA-TGCAGTGGAGCAGATTAAAGCCACA--ATGGCGTA-TCTTG
1 CTTCCC-CGACATTGCAGTTAAAAAGACTAAAGCCACAGCAT--CG-AGTGTTA
*
4558957 CTTCCCCGACATTGCAGTTAAAAAGACTAAAGCCACAGCGGT-GAGTGTTA
1 CTTCCCCGACATTGCAGTTAAAAAGACTAAAGCCACAGC-ATCGAGTGTTA
* * ** ** * * *
4559007 CTTCCCTGGAGA-TGCAGTGGAGCAGATTAAAGCCACA--ATGGCGTA-TCTTG
1 CTTCCC-CGACATTGCAGTTAAAAAGACTAAAGCCACAGCAT--CG-AGTGTTA
4559057 CTTCCCCGACATTGCAGTTAAAAAGACTAAAGCCACAGCATCGAGTGTTA
1 CTTCCCCGACATTGCAGTTAAAAAGACTAAAGCCACAGCATCGAGTGTTA
4559107 CTTCCC
1 CTTCCC
4559113 TGGCGATGCA
Statistics
Matches: 218, Mismatches: 59, Indels: 58
0.65 0.18 0.17
Matches are distributed among these distances:
47 3 0.01
49 12 0.06
50 187 0.86
51 12 0.06
52 2 0.01
53 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (50 bp):
CTTCCCCGACATTGCAGTTAAAAAGACTAAAGCCACAGCATCGAGTGTTA
Found at i:4566605 original size:30 final size:30
Alignment explanation
Indices: 4566568--4566718 Score: 151
Period size: 30 Copynumber: 5.1 Consensus size: 30
4566558 GACTATTGAA
* *
4566568 TATGAAAAGGGATGGTTTTGACCATCGGTT
1 TATGAAAAGGGATGGTTTCGACCATCGATT
* ** *
4566598 TACGAAAAGGGATGGTGACGACCATCAATT
1 TATGAAAAGGGATGGTTTCGACCATCGATT
* * * * *
4566628 AATGAAAATGGATGATTTTGACCATTGATT
1 TATGAAAAGGGATGGTTTCGACCATCGATT
* ** *
4566658 TATGAAAAGGTATGGTGACGACCATTGATT
1 TATGAAAAGGGATGGTTTCGACCATCGATT
*
4566688 AATGAAAAGGGATGGTTTCGACCATCG-TT
1 TATGAAAAGGGATGGTTTCGACCATCGATT
4566717 TA
1 TA
4566719 GCATACTTTG
Statistics
Matches: 93, Mismatches: 28, Indels: 1
0.76 0.23 0.01
Matches are distributed among these distances:
29 3 0.03
30 90 0.97
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (30 bp):
TATGAAAAGGGATGGTTTCGACCATCGATT
Found at i:4566665 original size:60 final size:60
Alignment explanation
Indices: 4566569--4566718 Score: 212
Period size: 60 Copynumber: 2.5 Consensus size: 60
4566559 ACTATTGAAT
*
4566569 ATGAAAAGGGATGGTTTTGACCATCGGTTTACGAAAAGGGATGGTGACGACCATCAATTA
1 ATGAAAAGGGATGGTTTTGACCATCGATTTACGAAAAGGGATGGTGACGACCATCAATTA
* * * * * **
4566629 ATGAAAATGGATGATTTTGACCATTGATTTATGAAAAGGTATGGTGACGACCATTGATTA
1 ATGAAAAGGGATGGTTTTGACCATCGATTTACGAAAAGGGATGGTGACGACCATCAATTA
*
4566689 ATGAAAAGGGATGGTTTCGACCATCG-TTTA
1 ATGAAAAGGGATGGTTTTGACCATCGATTTA
4566719 GCATACTTTG
Statistics
Matches: 78, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
59 4 0.05
60 74 0.95
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.29
Consensus pattern (60 bp):
ATGAAAAGGGATGGTTTTGACCATCGATTTACGAAAAGGGATGGTGACGACCATCAATTA
Found at i:4572494 original size:20 final size:21
Alignment explanation
Indices: 4572456--4572494 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
4572446 TATTTACGTT
* *
4572456 TTTTTTCTCTTCTTCTTTTAC
1 TTTTTCCTCTTCTTATTTTAC
4572477 TTTTTCCTCTT-TTATTTT
1 TTTTTCCTCTTCTTATTTT
4572495 TGCCAATTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.05, C:0.21, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTTTCCTCTTCTTATTTTAC
Found at i:4588365 original size:40 final size:40
Alignment explanation
Indices: 4588158--4588349 Score: 357
Period size: 40 Copynumber: 4.8 Consensus size: 40
4588148 CATTTGAATG
*
4588158 ATATCCAGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
4588198 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
4588238 ATATCCGGGCTAAGACCCAAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
4588278 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
*
4588318 ATATCCGGGCTAAGACCCGAGGGCATTTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
4588350 TTGTGGTTAT
Statistics
Matches: 148, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 148 1.00
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGAT
Found at i:4592497 original size:43 final size:42
Alignment explanation
Indices: 4592449--4592532 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 42
4592439 GGGTAAATCG
* *
4592449 AACAACCCATGTTTATCTTCTCCTCTTTTAAAATTATTTTTTC
1 AACAACCCAAGATTATCTTCTCCT-TTTTAAAATTATTTTTTC
* * *
4592492 AACAACTCAAGATTATCTTCTCCTTTTTTAAATTCTTTTTT
1 AACAACCCAAGATTATCTTCTCCTTTTTAAAATTATTTTTT
4592533 TCTAGGATAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 15 0.42
43 21 0.58
ACGTcount: A:0.26, C:0.21, G:0.02, T:0.50
Consensus pattern (42 bp):
AACAACCCAAGATTATCTTCTCCTTTTTAAAATTATTTTTTC
Found at i:4612727 original size:20 final size:20
Alignment explanation
Indices: 4612690--4612727 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
4612680 GCACTTAGGT
*
4612690 AATTGGGCCTCGATGGCTAA
1 AATTGGGCCTCAATGGCTAA
4612710 AATTGGG-CTCAATAGGCT
1 AATTGGGCCTCAAT-GGCT
4612728 TACGGGCCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.26
Consensus pattern (20 bp):
AATTGGGCCTCAATGGCTAA
Found at i:4616542 original size:14 final size:13
Alignment explanation
Indices: 4616506--4616568 Score: 108
Period size: 13 Copynumber: 4.8 Consensus size: 13
4616496 AGAAAAATAT
*
4616506 TTTAATTTCTATG
1 TTTATTTTCTATG
4616519 TTTATTTTCTATG
1 TTTATTTTCTATG
4616532 TTTATTTTTCTATG
1 TTTA-TTTTCTATG
4616546 TTTATTTTCTATG
1 TTTATTTTCTATG
4616559 TTTATTTTCT
1 TTTATTTTCT
4616569 GTGAATTTAT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
13 35 0.73
14 13 0.27
ACGTcount: A:0.16, C:0.08, G:0.06, T:0.70
Consensus pattern (13 bp):
TTTATTTTCTATG
Found at i:4616543 original size:27 final size:27
Alignment explanation
Indices: 4616511--4616566 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
4616501 AATATTTTAA
4616511 TTTCTATGTTTATTTTCTATGTTTATT
1 TTTCTATGTTTATTTTCTATGTTTATT
4616538 TTTCTATGTTTATTTTCTATGTTTATT
1 TTTCTATGTTTATTTTCTATGTTTATT
4616565 TT
1 TT
4616567 CTGTGAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (27 bp):
TTTCTATGTTTATTTTCTATGTTTATT
Found at i:4617598 original size:21 final size:20
Alignment explanation
Indices: 4617574--4617615 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
4617564 ATGAAATGTG
4617574 TGAATAT-ATATAAGCTATGGC
1 TGAATATGAT-TAAGCT-TGGC
4617595 TGAATATGATTAAGCTTGGC
1 TGAATATGATTAAGCTTGGC
4617615 T
1 T
4617616 ATTATACCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 13 0.65
22 2 0.10
ACGTcount: A:0.33, C:0.10, G:0.21, T:0.36
Consensus pattern (20 bp):
TGAATATGATTAAGCTTGGC
Found at i:4628149 original size:43 final size:43
Alignment explanation
Indices: 4628101--4628245 Score: 161
Period size: 43 Copynumber: 3.4 Consensus size: 43
4628091 AGCTCGTACA
*
4628101 ATGCCAACATCCCAGACATGGTCTTACATGTAATCAAATATCG
1 ATGCCAACATCCCAGACACGGTCTTACATGTAATCAAATATCG
* * * *
4628144 ATGCC-ACTATCCCAGACAGGGTCTTACACGAAATCATATA-CG
1 ATGCCAAC-ATCCCAGACACGGTCTTACATGTAATCAAATATCG
** *
4628186 ATGCCAATGTCCCAGACACGGTCTTAAATGTAAATCACAA-ATCG
1 ATGCCAACATCCCAGACACGGTCTTACATGT-AATCA-AATATCG
*
4628230 ATGCCAACGTCCCAGA
1 ATGCCAACATCCCAGA
4628246 TGGGGTCTTA
Statistics
Matches: 85, Mismatches: 12, Indels: 9
0.80 0.11 0.08
Matches are distributed among these distances:
42 27 0.32
43 40 0.47
44 18 0.21
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (43 bp):
ATGCCAACATCCCAGACACGGTCTTACATGTAATCAAATATCG
Found at i:4628254 original size:86 final size:85
Alignment explanation
Indices: 4628101--4628258 Score: 212
Period size: 86 Copynumber: 1.8 Consensus size: 85
4628091 AGCTCGTACA
* *
4628101 ATGCCAACATCCCAGACATGGTCTTACATGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
1 ATGCCAACATCCCAGACACGGTCTTAAATGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
4628166 CTTACACGAAATCATATACG
66 CTTACACGAAATCATATACG
** * **
4628186 ATGCCAATGTCCCAGACACGGTCTTAAATGTAAATCACAA-ATCGATGCCAAC-GTCCCAGATGG
1 ATGCCAACATCCCAGACACGGTCTTAAATGT-AATCA-AATATCGATGCC-ACTATCCCAGACAG
4628249 GGTCTTACAC
63 GGTCTTACAC
4628259 AATAACACAT
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 27 0.43
86 32 0.51
87 4 0.06
ACGTcount: A:0.33, C:0.27, G:0.17, T:0.23
Consensus pattern (85 bp):
ATGCCAACATCCCAGACACGGTCTTAAATGTAATCAAATATCGATGCCACTATCCCAGACAGGGT
CTTACACGAAATCATATACG
Found at i:4638673 original size:39 final size:40
Alignment explanation
Indices: 4638470--4638692 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
4638460 TTGAATGCTG
* * * * * *
4638470 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
4638510 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
**
4638550 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
4638590 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
4638630 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
4638669 TCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
4638693 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 36 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:4638712 original size:79 final size:80
Alignment explanation
Indices: 4638545--4638727 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
4638535 GTGCGAGATA
** *
4638545 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
** **
4638610 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
4638625 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
*
4638689 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
4638704 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
4638728 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:4646208 original size:40 final size:40
Alignment explanation
Indices: 4646125--4646387 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
4646115 TTGAATGCTG
* * * * * *
4646125 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
4646165 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
4646205 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
4646245 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
4646285 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
4646325 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
4646364 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
4646388 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:4646407 original size:79 final size:80
Alignment explanation
Indices: 4646164--4646422 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
4646154 AAGTGAATAT
* * * * * *
4646164 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
4646228 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
4646244 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
4646309 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
4646324 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
4646388 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
4646403 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
4646423 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:4656373 original size:86 final size:86
Alignment explanation
Indices: 4656228--4656399 Score: 335
Period size: 86 Copynumber: 2.0 Consensus size: 86
4656218 ATGTCACTAT
4656228 AAAATCATCCCGTTGAACAATTCGGATCAATCCTCGATACTTGGTGGTTTCAGCACACAGCTCCA
1 AAAATCATCCCGTTGAACAATTCGGATCAATCCTCGATACTTGGTGGTTTCAGCACACAGCTCCA
4656293 CCATCATATTTCATATAATTC
66 CCATCATATTTCATATAATTC
*
4656314 AAAATCATCCCGTTGAACAATTCGGATCAATCCTCGATACTTGGTGGTTTCAGCACACAGCTCTA
1 AAAATCATCCCGTTGAACAATTCGGATCAATCCTCGATACTTGGTGGTTTCAGCACACAGCTCCA
4656379 CCATCATATTTCATATAATTC
66 CCATCATATTTCATATAATTC
4656400 GGCTCTCTTG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 85 1.00
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (86 bp):
AAAATCATCCCGTTGAACAATTCGGATCAATCCTCGATACTTGGTGGTTTCAGCACACAGCTCCA
CCATCATATTTCATATAATTC
Found at i:4663162 original size:38 final size:38
Alignment explanation
Indices: 4663080--4663268 Score: 220
Period size: 38 Copynumber: 4.9 Consensus size: 38
4663070 AAACACAACA
* * * * *
4663080 CCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATA
1 CCAGCACTAAGCCTGCGGGA-TTT-AACCCGGATATAATT
*
4663120 CCAGCACTAGGCCTGCGGGATTTAACCCGGATATAATT
1 CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
* *
4663158 CCAGCACGAAGCTTGCGGGATTTAACCCGGATAT-ATT
1 CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
*
4663195 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAATT
1 -CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
*
4663234 CCAGCA-TATAGCCTGCGGGCCTTTAAGCCCGGATA
1 CCAGCACTA-AGCCTGCGGG-ATTTAA-CCCGGATA
4663269 CAATCTCAGC
Statistics
Matches: 131, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
37 4 0.03
38 91 0.69
39 11 0.08
40 25 0.19
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (38 bp):
CCAGCACTAAGCCTGCGGGATTTAACCCGGATATAATT
Found at i:4663212 original size:76 final size:78
Alignment explanation
Indices: 4663080--4663282 Score: 243
Period size: 76 Copynumber: 2.6 Consensus size: 78
4663070 AAACACAACA
* * *
4663080 CCAGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGCGGGATTTAA
1 CCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA
4663145 CCCGGATATAATT
66 CCCGGATATAATT
* * * *
4663158 CCAGCACGAAGCTTGCGGGA-TTT-AACCCGGATATATTACCAGCACAAAGCCTGCGGGATTTAA
1 CCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA
4663221 CCCGGATATAATT
66 CCCGGATATAATT
* * * * * *
4663234 CCAGCA-TATAGCCTGCGGGCCTTTAAGCCCGGATACAAT-CTCAGCACAA
1 CCAGCACGA-AGCCTACGGGACTTTAAACCCAGATATAATAC-CAGCACAA
4663283 TTTATTTTAT
Statistics
Matches: 108, Mismatches: 13, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
75 1 0.01
76 63 0.58
77 7 0.06
78 37 0.34
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (78 bp):
CCAGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAGCACAAAGCCTGCGGGATTTAA
CCCGGATATAATT
Found at i:4667604 original size:27 final size:27
Alignment explanation
Indices: 4667573--4667688 Score: 162
Period size: 27 Copynumber: 4.3 Consensus size: 27
4667563 CCCCGATTCA
*
4667573 TAAAATGACCGTAACACCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
4667600 TAAAATGACCGTAATACCTCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
*
4667627 TAAAATGACCGTAAT-GCCCTGTAGGG
1 TAAAATGACCGTAATACCCCTGTAGGG
* * * *
4667653 TACAATGACCGTAATATCCATGTATGG
1 TAAAATGACCGTAATACCCCTGTAGGG
4667680 TAAAATGAC
1 TAAAATGAC
4667689 GATTATGCCC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
26 23 0.29
27 56 0.71
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (27 bp):
TAAAATGACCGTAATACCCCTGTAGGG
Found at i:4667660 original size:53 final size:54
Alignment explanation
Indices: 4667573--4667688 Score: 164
Period size: 53 Copynumber: 2.2 Consensus size: 54
4667563 CCCCGATTCA
*
4667573 TAAAATGACCGTAACACCCCTGTAGGGTAAAATGACCGTAATA-CCTCTGTAGGG
1 TAAAATGACCGTAACACCCCTGTAGGGTAAAATGACCGTAATATCC-ATGTAGGG
** * *
4667627 TAAAATGACCGTAA-TGCCCTGTAGGGTACAATGACCGTAATATCCATGTATGG
1 TAAAATGACCGTAACACCCCTGTAGGGTAAAATGACCGTAATATCCATGTAGGG
4667680 TAAAATGAC
1 TAAAATGAC
4667689 GATTATGCCC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
53 40 0.71
54 16 0.29
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (54 bp):
TAAAATGACCGTAACACCCCTGTAGGGTAAAATGACCGTAATATCCATGTAGGG
Found at i:4668116 original size:28 final size:27
Alignment explanation
Indices: 4668076--4668134 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
4668066 ACTGTATTGT
*
4668076 TACTGCATTGGGCTTA-GGCCCACACTG
1 TACTGCATAGGGC-TAGGGCCCACACTG
* *
4668103 CTACTGTATAGGGCTAGGGCCCAGACTG
1 -TACTGCATAGGGCTAGGGCCCACACTG
4668131 TACT
1 TACT
4668135 AATACCGAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 6 0.22
28 21 0.78
ACGTcount: A:0.20, C:0.27, G:0.27, T:0.25
Consensus pattern (27 bp):
TACTGCATAGGGCTAGGGCCCACACTG
Found at i:4668158 original size:33 final size:33
Alignment explanation
Indices: 4668121--4668197 Score: 118
Period size: 33 Copynumber: 2.3 Consensus size: 33
4668111 TAGGGCTAGG
4668121 GCCCAGACTGTACTAATACCGAATAGGGCTTAA
1 GCCCAGACTGTACTAATACCGAATAGGGCTTAA
* * * *
4668154 GCCCAGATTGTACTGATACTGAATAGGGCTTAG
1 GCCCAGACTGTACTAATACCGAATAGGGCTTAA
4668187 GCCCAGACTGT
1 GCCCAGACTGT
4668198 GTTATTCACT
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (33 bp):
GCCCAGACTGTACTAATACCGAATAGGGCTTAA
Found at i:4671336 original size:27 final size:27
Alignment explanation
Indices: 4671305--4671482 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
4671295 TAAATTGTAC
4671305 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
4671332 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
4671358 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
4671386 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
4671414 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
4671441 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
4671468 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
4671483 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:4671419 original size:82 final size:81
Alignment explanation
Indices: 4671306--4671461 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
4671296 AAATTGTACA
* *
4671306 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
4671370 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
4671387 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
4671452 TGCGAGTTGA
65 TGCGAATTGA
4671462 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:4671473 original size:82 final size:81
Alignment explanation
Indices: 4671302--4671482 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
4671292 GATTAAATTG
* *
4671302 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
4671367 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
4671383 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
4671447 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
4671465 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
4671483 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:4693477 original size:44 final size:44
Alignment explanation
Indices: 4693393--4693541 Score: 194
Period size: 44 Copynumber: 3.4 Consensus size: 44
4693383 CCAAATATAC
* * * *
4693393 ACAAGTTCTTACAC-GAAATCATATAT-GATGCCAATGTCCCAG
1 ACAAGGTCTTACACATAAATCACAAATCGATGCCAATGTCCCAG
*
4693435 ACAAGGTCTTACACATAAATCACAAATCGATGCCAATATCCCAG
1 ACAAGGTCTTACACATAAATCACAAATCGATGCCAATGTCCCAG
* * *
4693479 ACAAGGTCTTACACGTAAATCACAAATCGATGCCAACGTCCCAA
1 ACAAGGTCTTACACATAAATCACAAATCGATGCCAATGTCCCAG
*
4693523 ACATGGTCTTACACGATAA
1 ACAAGGTCTTACAC-ATAA
4693542 CACATATCGG
Statistics
Matches: 93, Mismatches: 11, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
42 13 0.14
43 9 0.10
44 68 0.73
45 3 0.03
ACGTcount: A:0.38, C:0.26, G:0.13, T:0.22
Consensus pattern (44 bp):
ACAAGGTCTTACACATAAATCACAAATCGATGCCAATGTCCCAG
Found at i:4696345 original size:66 final size:66
Alignment explanation
Indices: 4696265--4696462 Score: 396
Period size: 66 Copynumber: 3.0 Consensus size: 66
4696255 TCGCCAACTG
4696265 AATTTACCATGTATTTCATACATCATAAGCATGGACCAATAATCACAAGGCTTTCACAAAAACAT
1 AATTTACCATGTATTTCATACATCATAAGCATGGACCAATAATCACAAGGCTTTCACAAAAACAT
4696330 T
66 T
4696331 AATTTACCATGTATTTCATACATCATAAGCATGGACCAATAATCACAAGGCTTTCACAAAAACAT
1 AATTTACCATGTATTTCATACATCATAAGCATGGACCAATAATCACAAGGCTTTCACAAAAACAT
4696396 T
66 T
4696397 AATTTACCATGTATTTCATACATCATAAGCATGGACCAATAATCACAAGGCTTTCACAAAAACAT
1 AATTTACCATGTATTTCATACATCATAAGCATGGACCAATAATCACAAGGCTTTCACAAAAACAT
4696462 T
66 T
4696463 CTCGCGGAAA
Statistics
Matches: 132, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 132 1.00
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (66 bp):
AATTTACCATGTATTTCATACATCATAAGCATGGACCAATAATCACAAGGCTTTCACAAAAACAT
T
Found at i:4704444 original size:33 final size:33
Alignment explanation
Indices: 4704402--4704501 Score: 191
Period size: 33 Copynumber: 3.0 Consensus size: 33
4704392 ATATGTATAG
4704402 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
1 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
4704435 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
1 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
*
4704468 ATTCCTCTCTGAGTCTAGTTTCTACAGAAACAA
1 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
4704501 A
1 A
4704502 CGGCATCAGT
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.31, C:0.22, G:0.12, T:0.35
Consensus pattern (33 bp):
ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
Found at i:4711419 original size:27 final size:28
Alignment explanation
Indices: 4711335--4711432 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
4711325 CATGAGATTG
* * * *
4711335 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
4711364 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
4711392 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
4711419 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
4711433 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:4711443 original size:27 final size:27
Alignment explanation
Indices: 4711363--4711445 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
4711353 TAAATTGTAC
* *
4711363 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
4711391 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
4711418 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
4711445 A
1 A
4711446 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:4711446 original size:29 final size:27
Alignment explanation
Indices: 4711335--4711446 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
4711325 CATGAGATTG
** * *
4711335 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
4711364 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
4711392 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
4711419 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
4711447 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:4713630 original size:33 final size:33
Alignment explanation
Indices: 4713593--4713692 Score: 200
Period size: 33 Copynumber: 3.0 Consensus size: 33
4713583 ATATGTATAG
4713593 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
1 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
4713626 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
1 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
4713659 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
1 ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
4713692 A
1 A
4713693 CGGCATCAGT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 67 1.00
ACGTcount: A:0.31, C:0.21, G:0.12, T:0.36
Consensus pattern (33 bp):
ATTCCTCTCTGAGTCTAGTTTCTATAGAAACAA
Found at i:4716759 original size:279 final size:279
Alignment explanation
Indices: 4716259--4716816 Score: 936
Period size: 279 Copynumber: 2.0 Consensus size: 279
4716249 GAAAGTGGAA
4716259 AAAACCAAGATTGAATTCATTGAGAAATTGCCACATCCAACGTCAGTCCGTGAAATTCAGAACTT
1 AAAACCAAGATTGAATTCATTGAGAAATTGCCACATCCAACGTCAGTCCGTGAAATTCAGAACTT
* * * *
4716324 TCTAAGCCACACTAAATTTTATAGACGAGTCATCAAAGACTTCTCCTATATTGCAAAACCTTTAA
66 TCTAAGCCACACCAAATTTTATAGACGAGTCATCAAAAACTACTCCCATATTGCAAAACCTTTAA
* * * *
4716389 CTTAACTCTTATACAAGGACACACCATTTGTATTTGACAACAAGTGTGCTCAAGCATTCGAGGTA
131 CTTAACTATTATACAAAGACACACCATTTGTATTTAACAACAAGTGTGCTCAAGCATTAGAGGTA
* *
4716454 GTGAAGTAAAAACTAGTCTTAAATCCAACTATAATAAGCACGAACTGGACAGAACCTTTTGTAAT
196 GTGAAGCAAAAACTAGTCTTAAATCCAACTATAATAAGCACGAACTGGACAAAACCTTTTGTAAT
4716519 CATGTATGATGCTAGTGAC
261 CATGTATGATGCTAGTGAC
* *
4716538 AAAACCAAGATTGAATTCATTGAGAAATTTCCACATCCAACGTCAGTCCTTGAAATTCAGAACTT
1 AAAACCAAGATTGAATTCATTGAGAAATTGCCACATCCAACGTCAGTCCGTGAAATTCAGAACTT
* * * *
4716603 TCTAAGCTACACCAAATTTTATAGATGATTCATCAAAAACTACTCCCATATTGCAAAACTTTTAA
66 TCTAAGCCACACCAAATTTTATAGACGAGTCATCAAAAACTACTCCCATATTGCAAAACCTTTAA
* *
4716668 CTTAACTATTATAGAAAGACACACCATTTGTATTTAACAAGAAGTGTGCTCAAGCATTAGAGGTA
131 CTTAACTATTATACAAAGACACACCATTTGTATTTAACAACAAGTGTGCTCAAGCATTAGAGGTA
* *
4716733 TTGAAGCAAAAACTAGTCTTAAATCCAACTATAATAAGCACGAACTGGACAAAACCTTTTTTAAT
196 GTGAAGCAAAAACTAGTCTTAAATCCAACTATAATAAGCACGAACTGGACAAAACCTTTTGTAAT
4716798 CATGTATGATGCTAGTGAC
261 CATGTATGATGCTAGTGAC
4716817 TATGCTATTG
Statistics
Matches: 259, Mismatches: 20, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
279 259 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.29
Consensus pattern (279 bp):
AAAACCAAGATTGAATTCATTGAGAAATTGCCACATCCAACGTCAGTCCGTGAAATTCAGAACTT
TCTAAGCCACACCAAATTTTATAGACGAGTCATCAAAAACTACTCCCATATTGCAAAACCTTTAA
CTTAACTATTATACAAAGACACACCATTTGTATTTAACAACAAGTGTGCTCAAGCATTAGAGGTA
GTGAAGCAAAAACTAGTCTTAAATCCAACTATAATAAGCACGAACTGGACAAAACCTTTTGTAAT
CATGTATGATGCTAGTGAC
Found at i:4718452 original size:43 final size:41
Alignment explanation
Indices: 4718384--4718508 Score: 144
Period size: 42 Copynumber: 3.0 Consensus size: 41
4718374 TTCCAATATG
* *
4718384 TGATTTCGTGTAAGACCACAGCTGGGAC-TTGGCATCGATT
1 TGATTTCGTGTAAGACCATATCTGGGACATTGGCATCGATT
*
4718424 TGAGATTTACGTGTAAGACCATATCTGGGACATCGGCATCGTATT
1 T--GATTT-CGTGTAAGACCATATCTGGGACATTGGCATCG-ATT
* * * *
4718469 TGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCGAT
1 TGATTTCGTGTAAGACCATATCTGGGACATTGGCATCGAT
4718509 ATTTGATTAC
Statistics
Matches: 72, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
40 1 0.01
41 2 0.03
42 32 0.44
43 25 0.35
44 8 0.11
45 4 0.06
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.31
Consensus pattern (41 bp):
TGATTTCGTGTAAGACCATATCTGGGACATTGGCATCGATT
Found at i:4718513 original size:43 final size:42
Alignment explanation
Indices: 4718379--4718516 Score: 147
Period size: 43 Copynumber: 3.2 Consensus size: 42
4718369 TAGGATTCCA
* * *
4718379 ATATGTGATTTCGTGTAAGACCACAG-CTGGGACTTGGCATCG
1 ATATTTGATTTCGTGTAAGACC-CTGTCTGGGACATGGCATCG
* * *
4718421 AT-TTGAGATTTACGTGTAAGACCATATCTGGGACATCGGCATCG
1 ATATT-TGATTT-CGTGTAAGACCCTGTCTGGGACAT-GGCATCG
*
4718465 -TATTTGATTTCGTGTAAGACCCTGTTTGGGACAGTGGCATCG
1 ATATTTGATTTCGTGTAAGACCCTGTCTGGGACA-TGGCATCG
4718507 ATATTTGATT
1 ATATTTGATT
4718517 ACATTTGGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
41 1 0.01
42 34 0.43
43 35 0.44
44 9 0.11
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (42 bp):
ATATTTGATTTCGTGTAAGACCCTGTCTGGGACATGGCATCG
Found at i:4719264 original size:23 final size:23
Alignment explanation
Indices: 4719233--4719276 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
4719223 TTATGAAACA
*
4719233 TATGTTTTGGTATGACTTTGGAT
1 TATGATTTGGTATGACTTTGGAT
*
4719256 TATGATTTGGTATGATTTTGG
1 TATGATTTGGTATGACTTTGG
4719277 TATGGATATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.02, G:0.27, T:0.52
Consensus pattern (23 bp):
TATGATTTGGTATGACTTTGGAT
Found at i:4719277 original size:11 final size:11
Alignment explanation
Indices: 4719233--4719280 Score: 55
Period size: 11 Copynumber: 4.4 Consensus size: 11
4719223 TTATGAAACA
4719233 TATG-TTTTGG
1 TATGATTTTGG
*
4719243 TATGACTTTGG
1 TATGATTTTGG
4719254 ATTATGA-TTTGG
1 --TATGATTTTGG
4719266 TATGATTTTGG
1 TATGATTTTGG
4719277 TATG
1 TATG
4719281 GATATAAACA
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
10 9 0.27
11 14 0.42
12 5 0.15
13 5 0.15
ACGTcount: A:0.19, C:0.02, G:0.27, T:0.52
Consensus pattern (11 bp):
TATGATTTTGG
Found at i:4721144 original size:39 final size:40
Alignment explanation
Indices: 4721099--4721270 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
4721089 GCTCCTCGTT
* * *
4721099 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
4721139 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
4721178 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
4721218 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
4721258 CAAATGCCTTCGG
1 CAAATGCCTTCGG
4721271 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:4721199 original size:40 final size:39
Alignment explanation
Indices: 4721101--4721323 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
4721091 TCCTCGTTCA
* * * *
4721101 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
4721140 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
4721179 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
4721219 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
4721259 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
4721300 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
4721324 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:4721283 original size:80 final size:79
Alignment explanation
Indices: 4721099--4721323 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
4721089 GCTCCTCGTT
* * * * *
4721099 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
4721163 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
4721178 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
4721243 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
4721258 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
4721322 GA
63 GA
4721324 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:4721332 original size:41 final size:41
Alignment explanation
Indices: 4721255--4721332 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
4721245 TTTGTATCTC
* * *
4721255 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
4721296 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
4721333 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:4723353 original size:28 final size:28
Alignment explanation
Indices: 4723313--4723370 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
4723303 AAACAAGCTG
4723313 TAGCTAACGATGTTGAATGTAATGTGCT
1 TAGCTAACGATGTTGAATGTAATGTGCT
4723341 TAGCTAACGATGTTGAATGTAATGTGCT
1 TAGCTAACGATGTTGAATGTAATGTGCT
4723369 TA
1 TA
4723371 CTCCCACTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.36
Consensus pattern (28 bp):
TAGCTAACGATGTTGAATGTAATGTGCT
Found at i:4724741 original size:22 final size:22
Alignment explanation
Indices: 4724713--4724759 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
4724703 TTCCCTGTAT
4724713 AGTCTACTGAATTTGTAATTAG
1 AGTCTACTGAATTTGTAATTAG
4724735 AGTCTACTGAATTTGTAATTAG
1 AGTCTACTGAATTTGTAATTAG
4724757 AGT
1 AGT
4724760 ATCGAACCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (22 bp):
AGTCTACTGAATTTGTAATTAG
Found at i:4726676 original size:22 final size:22
Alignment explanation
Indices: 4726650--4726698 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
4726640 GATAATGATG
4726650 ATTCCAAATCGTGAGTAGGATA
1 ATTCCAAATCGTGAGTAGGATA
4726672 ATTCCAAATCGTGAGTAGGATA
1 ATTCCAAATCGTGAGTAGGATA
4726694 ATTCC
1 ATTCC
4726699 TCTCATGAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.35, C:0.16, G:0.20, T:0.29
Consensus pattern (22 bp):
ATTCCAAATCGTGAGTAGGATA
Found at i:4731132 original size:93 final size:93
Alignment explanation
Indices: 4731017--4731188 Score: 301
Period size: 93 Copynumber: 1.8 Consensus size: 93
4731007 CGCCCATAAG
*
4731017 CGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCATCCATAAGTGAACTCGGACTCAACTC
1 CGAACTCGGACTCAACTCAACGAGCTC-GGACATTCGCATCCATAAGTGAACTCGGACTCAACTC
4731081 AACAAGTTCGGATGCCTAGTTACATCTCA
65 AACAAGTTCGGATGCCTAGTTACATCTCA
*
4731110 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
4731175 ACGAGTTCGGATGC
66 ACAAGTTCGGATGC
4731189 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
92 2 0.03
93 73 0.97
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCGGATGCCTAGTTACATCTCA
Found at i:4731183 original size:46 final size:46
Alignment explanation
Indices: 4731010--4731185 Score: 200
Period size: 46 Copynumber: 3.8 Consensus size: 46
4731000 TGTAACCCGC
* *
4731010 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCAGG-CGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTC-GGACATTCGCAT
* * *
4731056 CCATAAGTGAACTCGGACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
4731106 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
4731149 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
4731186 TGCTCAACCA
Statistics
Matches: 109, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 4 0.04
46 60 0.55
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:4735390 original size:24 final size:24
Alignment explanation
Indices: 4735358--4735412 Score: 83
Period size: 24 Copynumber: 2.2 Consensus size: 24
4735348 CTTACAATTC
4735358 AGCTCAATAGAGCTTACTGTTTTT
1 AGCTCAATAGAGCTTACTGTTTTT
* *
4735382 AGCTTAATAGAGCTTACTGTTTATC
1 AGCTCAATAGAGCTTACTGTTT-TT
4735407 AGCTCA
1 AGCTCA
4735413 GGAGGAGCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 21 0.78
25 6 0.22
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (24 bp):
AGCTCAATAGAGCTTACTGTTTTT
Found at i:4738349 original size:40 final size:41
Alignment explanation
Indices: 4738266--4738411 Score: 176
Period size: 40 Copynumber: 3.6 Consensus size: 41
4738256 TTGAATGATG
* * * *
4738266 TCCGGGCTAAGTCCCGGAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
*
4738306 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-AA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
4738346 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
4738387 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
4738412 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
39 1 0.01
40 81 0.88
41 10 0.11
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:4738418 original size:80 final size:80
Alignment explanation
Indices: 4738266--4738434 Score: 184
Period size: 80 Copynumber: 2.1 Consensus size: 80
4738256 TTGAATGATG
* * *
4738266 TCCGGGCTAAGTCCCGGAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
**
4738331 GTGCGAGTTA-CTAAA
66 GAACGAG-TAGCTAAA
* * * * *
4738346 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCAT
*
4738409 TTGAACGAGTAGCTATA
64 TTGAACGAGTAGCTAAA
4738426 TCC-GGTTAA
1 TCCGGGTTAA
4738435 ATTCTGAAGG
Statistics
Matches: 75, Mismatches: 11, Indels: 7
0.81 0.12 0.08
Matches are distributed among these distances:
79 9 0.12
80 59 0.79
81 7 0.09
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTT
GAACGAGTAGCTAAA
Found at i:4741725 original size:94 final size:94
Alignment explanation
Indices: 4741582--4741794 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 94
4741572 CGAGGCCAAT
* * *
4741582 GCATGTCCCAGACATGTCTTACACTGGCACTCATCTCTGTGCCGGTGCCACATCCCAGACATGGT
1 GCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGGTGCCGATGCCACATCCCAGACATGGT
* * * *
4741647 CTTACACTGGCTATCATAGTATGGATGAT
66 CTTACACTAGCTATCATAATATGGACGAA
* * * **
4741676 GGATGTCCCAGACATGTCTTACACTAGCCCTCGA-CT-GGATGCTGATGCCATGTCCCAGACATG
1 GCATGTCCCAGACATGTCTTACACTAGCACTC-ATCTCGG-TGCCGATGCCACATCCCAGACATG
* * *
4741739 GTCTTACACTAGCTCTCATAATGTGGCCGAA
64 GTCTTACACTAGCTATCATAATATGGACGAA
**
4741770 GCATGTCCCAGACACATCTTACACT
1 GCATGTCCCAGACATGTCTTACACT
4741795 GGTGCACAAA
Statistics
Matches: 99, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
93 1 0.01
94 97 0.98
95 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (94 bp):
GCATGTCCCAGACATGTCTTACACTAGCACTCATCTCGGTGCCGATGCCACATCCCAGACATGGT
CTTACACTAGCTATCATAATATGGACGAA
Found at i:4741775 original size:47 final size:46
Alignment explanation
Indices: 4741436--4741794 Score: 214
Period size: 47 Copynumber: 7.7 Consensus size: 46
4741426 GGATATATTA
* *
4741436 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATA-TACGCGTG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATACT--GTG-G
* * * * *
4741486 CTGATGCATGTCCCAGACATGTCCTACACTAG--CACA-ACTCTTAG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACT-GTGG
** * * *
4741530 CCGATGTGTGTCCCAGACACGTCTTAAACTAGCTATC-T-CTGTCGAGG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACTGT---GG
* * * *
4741577 CCAATGCATGTCCCAGACATGTCTTACACTGGCACTCAT-CTCTGTG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACTGTG-G
* ** * * * *
4741623 CCGGTGCCACATCCCAGACATGGTCTTACACTGGCTATCATAGTATGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATACTGTGG
** * * *
4741671 ATGATGGATGTCCCAGACATGTCTTACACTAGCCCTC-GACTG-GATG
1 CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACTGTG--G
* *
4741717 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATAATGTGG
1 CCGATG-CATGTCCCAGACAT-GTCTTACACTAGCTCTCATACTGTGG
* **
4741765 CCGAAGCATGTCCCAGACACATCTTACACT
1 CCGATGCATGTCCCAGACATGTCTTACACT
4741795 GGTGCACAAA
Statistics
Matches: 236, Mismatches: 55, Indels: 40
0.71 0.17 0.12
Matches are distributed among these distances:
44 29 0.12
45 7 0.03
46 39 0.17
47 79 0.33
48 56 0.24
49 20 0.08
50 6 0.03
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
CCGATGCATGTCCCAGACATGTCTTACACTAGCTCTCATACTGTGG
Found at i:4743568 original size:10 final size:9
Alignment explanation
Indices: 4743545--4743570 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
4743535 TTTGGTGTTA
4743545 GTTTTTGAT
1 GTTTTTGAT
4743554 GTTTTTGAT
1 GTTTTTGAT
4743563 GTTTTTGA
1 GTTTTTGA
4743571 GATCATTGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.23, T:0.65
Consensus pattern (9 bp):
GTTTTTGAT
Found at i:4744376 original size:42 final size:42
Alignment explanation
Indices: 4744304--4744469 Score: 154
Period size: 42 Copynumber: 4.0 Consensus size: 42
4744294 ATCGGCATCA
* * * *
4744304 ATATGAG-TTATCATGTAAGACCATATCTGGGATATGGCGTTG
1 ATATGAGATT-TCGTGTAAGACCACATCTGGGACATGGCGTCG
*
4744346 ATATAAGATTTCGTGTAAGACCACATCTGGGACATGGCGTCG
1 ATATGAGATTTCGTGTAAGACCACATCTGGGACATGGCGTCG
* * * * * * * *
4744388 AAATGAGAATTCGTATAAAACTATATCTGGGATATGGCATCG
1 ATATGAGATTTCGTGTAAGACCACATCTGGGACATGGCGTCG
* ** * *
4744430 ATGTGAGATCCCATGTAAGACCACGTCTGGGACATGGCGT
1 ATATGAGATTTCGTGTAAGACCACATCTGGGACATGGCGT
4744470 TGGCATAGTA
Statistics
Matches: 96, Mismatches: 27, Indels: 2
0.77 0.22 0.02
Matches are distributed among these distances:
42 94 0.98
43 2 0.02
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (42 bp):
ATATGAGATTTCGTGTAAGACCACATCTGGGACATGGCGTCG
Found at i:4746540 original size:24 final size:24
Alignment explanation
Indices: 4746498--4746561 Score: 101
Period size: 24 Copynumber: 2.6 Consensus size: 24
4746488 GAATTTTTAT
* *
4746498 TTTAATGCGATAAATAAACGAGAAA
1 TTTAATGC-TTAAAAAAACGAGAAA
4746523 TTTAATGCTTAAAAAAACGAGAAA
1 TTTAATGCTTAAAAAAACGAGAAA
4746547 TTTAATGCTTAAAAA
1 TTTAATGCTTAAAAA
4746562 CATTCATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
24 29 0.78
25 8 0.22
ACGTcount: A:0.52, C:0.08, G:0.12, T:0.28
Consensus pattern (24 bp):
TTTAATGCTTAAAAAAACGAGAAA
Found at i:4753083 original size:25 final size:25
Alignment explanation
Indices: 4753055--4753104 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
4753045 TAATACATAA
4753055 AATAAAATAAAAAATTATAGCTCGT
1 AATAAAATAAAAAATTATAGCTCGT
4753080 AATAAAATAAAAAATTATAGCTCGT
1 AATAAAATAAAAAATTATAGCTCGT
4753105 CCTTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.56, C:0.08, G:0.08, T:0.28
Consensus pattern (25 bp):
AATAAAATAAAAAATTATAGCTCGT
Found at i:4755847 original size:41 final size:40
Alignment explanation
Indices: 4755802--4755930 Score: 168
Period size: 41 Copynumber: 3.1 Consensus size: 40
4755792 ATTCATTTCA
* *
4755802 TGCCATCATATTTACTTTGGTGTATCCGATGATGCACTATG
1 TGCCAT-ATATTTACTTTGGTTTATTCGATGATGCACTATG
* *
4755843 TGCCAATATATTTACTTCGGTTTATTCGATGATACACTATG
1 TGCC-ATATATTTACTTTGGTTTATTCGATGATGCACTATG
* *
4755884 TGCCAGTATATTTACTTTGGTTTATTTGATGATGCACTGAGG
1 TGCCA-TATATTTACTTTGGTTTATTCGATGATGCACT-ATG
4755926 TGCCA
1 TGCCA
4755931 GATTGGTGTG
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
40 1 0.01
41 67 0.87
42 9 0.12
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.40
Consensus pattern (40 bp):
TGCCATATATTTACTTTGGTTTATTCGATGATGCACTATG
Found at i:4760441 original size:39 final size:41
Alignment explanation
Indices: 4760398--4760478 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
4760388 TGATATGAAG
*
4760398 ATAGATTTTTATTCTT-AA-ATATCAGGAAACAAATGTCTT
1 ATAGATTTTTATTCTTGAATAAATCAGGAAACAAATGTCTT
*
4760437 ATAGATTTTTATTCTTGAATAAATCAGGTAACAAATGTCTT
1 ATAGATTTTTATTCTTGAATAAATCAGGAAACAAATGTCTT
4760478 A
1 A
4760479 GATAATAGAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 16 0.42
40 2 0.05
41 20 0.53
ACGTcount: A:0.38, C:0.10, G:0.11, T:0.41
Consensus pattern (41 bp):
ATAGATTTTTATTCTTGAATAAATCAGGAAACAAATGTCTT
Found at i:4764404 original size:43 final size:43
Alignment explanation
Indices: 4764346--4764427 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
4764336 AGGTATGTAC
* * *
4764346 CATCCGAGCTTGTTGAGA-AGTCTGAGTTTATTATGGATGCAAG
1 CATCCGAGCTCGTTGA-ATAGTCCGAGTTCATTATGGATGCAAG
*
4764389 CATCCGAGCTCGTTGAATGGTCCGAGTTCATTATGGATG
1 CATCCGAGCTCGTTGAATAGTCCGAGTTCATTATGGATG
4764428 TGATACATGT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
42 1 0.03
43 33 0.97
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (43 bp):
CATCCGAGCTCGTTGAATAGTCCGAGTTCATTATGGATGCAAG
Found at i:4768590 original size:47 final size:47
Alignment explanation
Indices: 4768548--4769482 Score: 1685
Period size: 47 Copynumber: 19.9 Consensus size: 47
4768538 TATACACTTC
* * * *
4768548 CACATCCATCATATTGGCCATTCGGCCTTATCACATATATACACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCA-TGTT
4768595 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4768642 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4768689 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4768736 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4768783 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4768830 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4768877 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4768924 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4768971 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4769018 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4769065 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4769112 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4769159 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4769206 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4769253 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
4769300 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
* * **
4769347 CACATTCATCACATTGGCCATTCGGCCTTATCACACATACACATGTT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
* **
4769394 CACATTCATCACATTGGCCATTCGGCCTTATCACGCATATATATACT-TT
1 CACATTCATCACATTGGCCATTCGGCCTTAT--CTCATATATGCA-TGTT
* * * *
4769443 CATATTCATCACATTGGCCACTCGGCCCTATCACATATAT
1 CACATTCATCACATTGGCCATTCGGCCTTATCTCATATAT
4769483 ATACTTGTAC
Statistics
Matches: 868, Mismatches: 16, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
46 1 0.00
47 828 0.95
49 38 0.04
50 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.12, T:0.35
Consensus pattern (47 bp):
CACATTCATCACATTGGCCATTCGGCCTTATCTCATATATGCATGTT
Found at i:4771117 original size:131 final size:130
Alignment explanation
Indices: 4770883--4771140 Score: 480
Period size: 131 Copynumber: 2.0 Consensus size: 130
4770873 AAAATTATAT
4770883 TCGGCCTTAGCACACAACTTGCTAGCCGATTCTTCTCCATCTAGCAACTAATGCACATATGTGCT
1 TCGGCCTTAGCACACAACTTGCTAGCCGATTCTTCTCCATCTAGCAACTAATGCACATATGTGCT
4770948 CATTTGTTAGACTCTACTTCATCTAACAACAACCATATTTTCCCTTCTACTTCCTACCATGGCCG
66 CATTTGTTAGACTCTACTTCATCTAACAACAACCATA-TTTCCCTTCTACTTCCTACCATGGCCG
4771013 G
130 G
*
4771014 TCGGCCTTAGCACACAACTTGCTAGCCGATTCTTCTCCATCTAGCAACTAGTGCACATATGTGCT
1 TCGGCCTTAGCACACAACTTGCTAGCCGATTCTTCTCCATCTAGCAACTAATGCACATATGTGCT
* *
4771079 TATTTGTTAGACTCTACTTCATCTAACAACAACCATATTTCCCTTCTACTTCCTACGATGGC
66 CATTTGTTAGACTCTACTTCATCTAACAACAACCATATTTCCCTTCTACTTCCTACCATGGC
4771141 TGAATGCTCA
Statistics
Matches: 124, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
130 24 0.19
131 100 0.81
ACGTcount: A:0.24, C:0.31, G:0.12, T:0.33
Consensus pattern (130 bp):
TCGGCCTTAGCACACAACTTGCTAGCCGATTCTTCTCCATCTAGCAACTAATGCACATATGTGCT
CATTTGTTAGACTCTACTTCATCTAACAACAACCATATTTCCCTTCTACTTCCTACCATGGCCGG
Found at i:4774134 original size:30 final size:30
Alignment explanation
Indices: 4774098--4774159 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
4774088 ACTTCATAAG
4774098 TTTTATGTATCAAGATTTTAACACTTAAAA
1 TTTTATGTATCAAGATTTTAACACTTAAAA
*
4774128 TTTTATGTATCGAGATTTTAACACTTAAAA
1 TTTTATGTATCAAGATTTTAACACTTAAAA
4774158 TT
1 TT
4774160 GTTCTATAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.37, C:0.10, G:0.08, T:0.45
Consensus pattern (30 bp):
TTTTATGTATCAAGATTTTAACACTTAAAA
Found at i:4781005 original size:47 final size:47
Alignment explanation
Indices: 4780923--4781232 Score: 521
Period size: 47 Copynumber: 6.6 Consensus size: 47
4780913 NNNNNNNNNN
*
4780923 ATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATGA
1 ATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4780972 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4781019 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4781066 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
4781113 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
4781160 ATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
4781207 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
4781233 TCCCGAAGGG
Statistics
Matches: 250, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
47 239 0.96
49 11 0.04
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:4782709 original size:43 final size:43
Alignment explanation
Indices: 4782648--4782750 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
4782638 TTGGTTTTCA
4782648 GCACTAAGTGTGCGGGCAATAAGTGTTCACAGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACAGTTGTGAGATTG
*
4782691 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACAGTTGTGAGATTG
4782734 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
4782751 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.23, C:0.16, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACAGTTGTGAGATTG
Found at i:4782767 original size:29 final size:29
Alignment explanation
Indices: 4782732--4782805 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
4782722 GTTGTGAGAT
* *
4782732 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
4782761 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
4782790 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
4782806 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:4783239 original size:40 final size:40
Alignment explanation
Indices: 4783116--4783351 Score: 201
Period size: 40 Copynumber: 5.9 Consensus size: 40
4783106 TCGAATGATG
** *
4783116 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCT-AGTGA-TATA
* ** * * *
4783156 TCCGGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCATGCTAGTGA-TATA
*
4783196 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
** *
4783236 TCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* ** * * * *
4783276 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
* * *
4783316 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
4783352 CGTGTATTCG
Statistics
Matches: 160, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
39 1 0.01
40 140 0.88
41 19 0.12
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATATA
Found at i:4792908 original size:28 final size:27
Alignment explanation
Indices: 4792858--4792971 Score: 79
Period size: 28 Copynumber: 3.9 Consensus size: 27
4792848 CTATTCAGAA
*
4792858 ATCAGTGTTAA-CTGGGCCTTAGCCCAT
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
4792885 ATCAGTATTAATCTGGGCCATAGCCC-T
1 ATCAGTATTAATCTGGGCC-TAGCCCAT
* *
4792912 ATTACAATATCAGAGCATACTGGGCCTAGCCCAT
1 A-T-CAGTAT--TA--AT-CTGGGCCTAGCCCAT
* *
4792946 ATCAGTATCAGTCTGGGCCGTAGCCC
1 ATCAGTATTAATCTGGGCC-TAGCCC
4792972 TATTACAAGT
Statistics
Matches: 70, Mismatches: 7, Indels: 19
0.73 0.07 0.20
Matches are distributed among these distances:
27 19 0.27
28 21 0.30
29 5 0.07
30 1 0.01
31 1 0.01
32 5 0.07
33 9 0.13
34 9 0.13
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (27 bp):
ATCAGTATTAATCTGGGCCTAGCCCAT
Done.