Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 139 of 182
Found at i:42615156 original size:5 final size:5
Alignment explanation
Indices: 42615146--42615175 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
42615136 AAATTGGTTT
42615146 CAATC CAATC CAATC CAATC CAATC CAATC
1 CAATC CAATC CAATC CAATC CAATC CAATC
42615176 AGAGTAAAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20
Consensus pattern (5 bp):
CAATC
Found at i:42621921 original size:42 final size:42
Alignment explanation
Indices: 42621862--42621945 Score: 141
Period size: 42 Copynumber: 2.0 Consensus size: 42
42621852 TTTAAAGCGT
* *
42621862 AAGCAACTAGATCAGCCTTGGCATACTTCTTTGAAGGTTTAA
1 AAGCAACTAGATCAGCCTCGACATACTTCTTTGAAGGTTTAA
*
42621904 AAGCAACTAGATCAGCCTCGACATACTTCTTTGGAGGTTTAA
1 AAGCAACTAGATCAGCCTCGACATACTTCTTTGAAGGTTTAA
42621946 TTTCTCTTCT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (42 bp):
AAGCAACTAGATCAGCCTCGACATACTTCTTTGAAGGTTTAA
Found at i:42625951 original size:5 final size:5
Alignment explanation
Indices: 42625941--42625977 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
42625931 CAATTTGTAA
42625941 AAAAT AAAAT AAAAT AAAA- ATAAAT -AAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT A-AAAT AAAAT AAAAT AAA
42625978 GAACACACAG
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
4 5 0.17
5 24 0.83
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:42627510 original size:49 final size:48
Alignment explanation
Indices: 42627454--42627550 Score: 131
Period size: 49 Copynumber: 2.0 Consensus size: 48
42627444 CATTGCCTAG
* * * * *
42627454 TGTTAAAAGGTGGCAACAAACAACATATGTACGTTATCCGGATGAAATA
1 TGTTAAAAAGTAGCAACAAACAACACATGTAAGTTA-CCAGATGAAATA
*
42627503 TGTTAAAAAGTAGCAACAAACAGCACATGTAAGTTACCAGATGAAATA
1 TGTTAAAAAGTAGCAACAAACAACACATGTAAGTTACCAGATGAAATA
42627551 CAGCAACATG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
48 11 0.26
49 31 0.74
ACGTcount: A:0.44, C:0.14, G:0.19, T:0.23
Consensus pattern (48 bp):
TGTTAAAAAGTAGCAACAAACAACACATGTAAGTTACCAGATGAAATA
Found at i:42628683 original size:6 final size:6
Alignment explanation
Indices: 42628672--42628698 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
42628662 GGAATAGAGA
42628672 AAGCTC AAGCTC AAGCTC AAGCTC AAG
1 AAGCTC AAGCTC AAGCTC AAGCTC AAG
42628699 TTACAAAGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.37, C:0.30, G:0.19, T:0.15
Consensus pattern (6 bp):
AAGCTC
Found at i:42629893 original size:13 final size:13
Alignment explanation
Indices: 42629875--42629900 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
42629865 CACCACAGTA
42629875 AAATGGTGTCTGT
1 AAATGGTGTCTGT
42629888 AAATGGTGTCTGT
1 AAATGGTGTCTGT
42629901 GAGAGGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.31, T:0.38
Consensus pattern (13 bp):
AAATGGTGTCTGT
Found at i:42632050 original size:49 final size:49
Alignment explanation
Indices: 42631978--42632075 Score: 160
Period size: 49 Copynumber: 2.0 Consensus size: 49
42631968 CAATGAGGAG
* * * *
42631978 TGTTAAAAGGTGGCAACAAACAGCATATGTACGTTATCCGGATGAAATA
1 TGTTAAAAAGTGGCAACAAACAGCACATGTAAGTTACCCGGATGAAATA
42632027 TGTTAAAAAGTGGCAACAAACAGCACATGTAAGTTACCCGGATGAAATA
1 TGTTAAAAAGTGGCAACAAACAGCACATGTAAGTTACCCGGATGAAATA
42632076 CAACAACATG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.22
Consensus pattern (49 bp):
TGTTAAAAAGTGGCAACAAACAGCACATGTAAGTTACCCGGATGAAATA
Found at i:42641136 original size:21 final size:21
Alignment explanation
Indices: 42641096--42641176 Score: 103
Period size: 21 Copynumber: 4.0 Consensus size: 21
42641086 CAAATAAGCC
42641096 AACAGAAGCTC--AAAAGCTT
1 AACAGAAGCTCATAAAAGCTT
* *
42641115 AACAGAAGCTCGTAAGAGCTT
1 AACAGAAGCTCATAAAAGCTT
* *
42641136 AACAGAATCTCATAAGAGCTT
1 AACAGAAGCTCATAAAAGCTT
*
42641157 AATAGAAGCTCATAAAAGCT
1 AACAGAAGCTCATAAAAGCT
42641177 GATCCACCCA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
19 11 0.20
21 43 0.80
ACGTcount: A:0.44, C:0.19, G:0.17, T:0.20
Consensus pattern (21 bp):
AACAGAAGCTCATAAAAGCTT
Found at i:42644124 original size:22 final size:22
Alignment explanation
Indices: 42644097--42644143 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
42644087 CAACATGCCA
*
42644097 GTGTGGCTGGTGTGACACGCCT
1 GTGTGGCTGATGTGACACGCCT
*
42644119 GTGTGGCTGATGTGACACGTCT
1 GTGTGGCTGATGTGACACGCCT
42644141 GTG
1 GTG
42644144 GTAAGCTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.11, C:0.19, G:0.40, T:0.30
Consensus pattern (22 bp):
GTGTGGCTGATGTGACACGCCT
Found at i:42645261 original size:20 final size:20
Alignment explanation
Indices: 42645216--42645263 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
42645206 GTAACAGTAG
* *
42645216 TCGACACATATAGTGTATCG
1 TCGACACATATAATGTATCA
* *
42645236 TTGACACATATAATGTCTCA
1 TCGACACATATAATGTATCA
42645256 TCGACACA
1 TCGACACA
42645264 CAATCGGAAT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (20 bp):
TCGACACATATAATGTATCA
Found at i:42646103 original size:24 final size:25
Alignment explanation
Indices: 42646075--42646121 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
42646065 TATTCGTGCC
42646075 TTTATTTCTCTT-TTTTCTTTATGT
1 TTTATTTCTCTTATTTTCTTTATGT
*
42646099 TTTATTTCTTTTATTTTCTTTAT
1 TTTATTTCTCTTATTTTCTTTAT
42646122 TCATTCTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.77
Consensus pattern (25 bp):
TTTATTTCTCTTATTTTCTTTATGT
Found at i:42649784 original size:3 final size:3
Alignment explanation
Indices: 42649776--42649811 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
42649766 AATGTGAAGC
42649776 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
42649812 TGTTCCTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:42650352 original size:23 final size:24
Alignment explanation
Indices: 42650320--42650370 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
42650310 TTTAGTAATA
*
42650320 AATAGTATTTT-TAATACTTTATTT
1 AATAGTATTTTATAATACTAT-TTT
*
42650344 AATA-TATTTTATATTACTATTTT
1 AATAGTATTTTATAATACTATTTT
42650367 AATA
1 AATA
42650371 ATAAAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 13 0.54
24 11 0.46
ACGTcount: A:0.37, C:0.04, G:0.02, T:0.57
Consensus pattern (24 bp):
AATAGTATTTTATAATACTATTTT
Found at i:42654109 original size:46 final size:46
Alignment explanation
Indices: 42654056--42654148 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
42654046 CCAAAGGCCT
42654056 AAGTGTCAACATTGTGGAAGAAGTCACCCCGGTGAATGTAGAAGTA
1 AAGTGTCAACATTGTGGAAGAAGTCACCCCGGTGAATGTAGAAGTA
42654102 AAGTGTCAACATTGTGGAAGAAGTCACCCCGGTGAATGTAGAAGTA
1 AAGTGTCAACATTGTGGAAGAAGTCACCCCGGTGAATGTAGAAGTA
42654148 A
1 A
42654149 GTTAGGGGCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.35, C:0.15, G:0.28, T:0.22
Consensus pattern (46 bp):
AAGTGTCAACATTGTGGAAGAAGTCACCCCGGTGAATGTAGAAGTA
Found at i:42660487 original size:23 final size:22
Alignment explanation
Indices: 42660449--42660532 Score: 87
Period size: 23 Copynumber: 3.6 Consensus size: 22
42660439 TATGACTAAA
** *
42660449 TTATATTAAAAGATTTTTTATTT
1 TTATATTAAATTATTTATTA-TT
42660472 TTATATTAAATTATTTAAATTATT
1 TTATATTAAATTATTT--ATTATT
* *
42660496 TTATATTAAATTAAATTAGTATT
1 TTATATTAAATT-ATTTATTATT
42660519 TTATATTAAATTAT
1 TTATATTAAATTAT
42660533 ATTAAGAGAT
Statistics
Matches: 52, Mismatches: 6, Indels: 7
0.80 0.09 0.11
Matches are distributed among these distances:
22 1 0.02
23 31 0.60
24 14 0.27
25 6 0.12
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.57
Consensus pattern (22 bp):
TTATATTAAATTATTTATTATT
Found at i:42660498 original size:10 final size:10
Alignment explanation
Indices: 42660472--42660537 Score: 68
Period size: 10 Copynumber: 6.9 Consensus size: 10
42660462 TTTTTTATTT
42660472 TTATATTAAA
1 TTATATTAAA
42660482 TTAT-TTAAA
1 TTATATTAAA
* *
42660491 TTATTTTATA
1 TTATATTAAA
*
42660501 TTAAATTAAA
1 TTATATTAAA
42660511 TTAGTATT---
1 TTA-TATTAAA
42660519 TTATATTAAA
1 TTATATTAAA
42660529 TTATATTAA
1 TTATATTAA
42660538 GAGATTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
7 4 0.09
8 3 0.07
9 9 0.20
10 27 0.59
11 3 0.07
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (10 bp):
TTATATTAAA
Found at i:42660536 original size:23 final size:23
Alignment explanation
Indices: 42660470--42660536 Score: 91
Period size: 23 Copynumber: 2.9 Consensus size: 23
42660460 GATTTTTTAT
*
42660470 TTTTATATTAAATTAT-TTAAATTA
1 TTTTATATTAAATTATATT--AGTA
*
42660494 TTTTATATTAAATTAAATTAGTA
1 TTTTATATTAAATTATATTAGTA
42660517 TTTTATATTAAATTATATTA
1 TTTTATATTAAATTATATTA
42660537 AGAGATTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
23 22 0.56
24 15 0.38
25 2 0.05
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (23 bp):
TTTTATATTAAATTATATTAGTA
Found at i:42678557 original size:33 final size:33
Alignment explanation
Indices: 42678520--42678589 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
42678510 GATTATGATG
42678520 GTTAGTTTGGTTTGGTTTAAATAAGTTGATTAT
1 GTTAGTTTGGTTTGGTTTAAATAAGTTGATTAT
42678553 GTTAGTTTGGTTTGGTTTAAATAAGTTGATTAT
1 GTTAGTTTGGTTTGGTTTAAATAAGTTGATTAT
42678586 GTTA
1 GTTA
42678590 TTGAGTTGAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.51
Consensus pattern (33 bp):
GTTAGTTTGGTTTGGTTTAAATAAGTTGATTAT
Found at i:42680510 original size:10 final size:10
Alignment explanation
Indices: 42680495--42680529 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
42680485 GTATGATTAT
42680495 ATTATGTTAA
1 ATTATGTTAA
*
42680505 ATTATGATTAT
1 ATTATG-TTAA
42680516 ATTATGTTAA
1 ATTATGTTAA
42680526 ATTA
1 ATTA
42680530 CTAATTCATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 13 0.59
11 9 0.41
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (10 bp):
ATTATGTTAA
Found at i:42680510 original size:21 final size:21
Alignment explanation
Indices: 42680486--42680529 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
42680476 GCTTAAGAAG
42680486 TATGATTATATTATGTTAAAT
1 TATGATTATATTATGTTAAAT
42680507 TATGATTATATTATGTTAAAT
1 TATGATTATATTATGTTAAAT
42680528 TA
1 TA
42680530 CTAATTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (21 bp):
TATGATTATATTATGTTAAAT
Found at i:42680519 original size:11 final size:11
Alignment explanation
Indices: 42680486--42680521 Score: 56
Period size: 11 Copynumber: 3.4 Consensus size: 11
42680476 GCTTAAGAAG
42680486 TATGATTATAT
1 TATGATTATAT
*
42680497 TATG-TTAAAT
1 TATGATTATAT
42680507 TATGATTATAT
1 TATGATTATAT
42680518 TATG
1 TATG
42680522 TTAAATTACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.36, C:0.00, G:0.11, T:0.53
Consensus pattern (11 bp):
TATGATTATAT
Found at i:42705556 original size:24 final size:24
Alignment explanation
Indices: 42705501--42705547 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
42705491 GTTTCAAAGA
*
42705501 ATACTAACTATAGTGTTTTAGAAC
1 ATACTAACTACAGTGTTTTAGAAC
42705525 ATACTAACTACAGTGTTTTAGAA
1 ATACTAACTACAGTGTTTTAGAA
42705548 TAGTTTAACC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (24 bp):
ATACTAACTACAGTGTTTTAGAAC
Found at i:42709576 original size:30 final size:29
Alignment explanation
Indices: 42709533--42709594 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 29
42709523 AAACATAAGA
42709533 TTGTGTTGTTGTAAAATATGTAAATTTGT
1 TTGTGTTGTTGTAAAATATGTAAATTTGT
*
42709562 TTGTGTTGGTTGTAAAATTTGTAAATTTGT
1 TTGTGTT-GTTGTAAAATATGTAAATTTGT
42709592 TTG
1 TTG
42709595 CCCAACAAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.23
30 24 0.77
ACGTcount: A:0.24, C:0.00, G:0.23, T:0.53
Consensus pattern (29 bp):
TTGTGTTGTTGTAAAATATGTAAATTTGT
Found at i:42711895 original size:53 final size:52
Alignment explanation
Indices: 42711758--42711909 Score: 164
Period size: 52 Copynumber: 2.9 Consensus size: 52
42711748 ATGTGATACA
* **
42711758 TGATTCCGTATAAGACCATAGCCGGGCTATGGCATCGGTACCATATGATTCG
1 TGATTCCGTATAAGACCATATCCGGGCTATGGCATCGGTATGATATGATTCG
* * * * *
42711810 T-ATCCCCGTATAAGACCATAGT-TGGGCTATGGCATCGGTGTGATGTGATTATG
1 TGAT-TCCGTATAAGACCATA-TCCGGGCTATGGCATCGGTATGATATGATT-CG
* * *
42711863 TGATTCCGTATAATACCATATCCGGGATATGGCATTGGTATGATATG
1 TGATTCCGTATAAGACCATATCCGGGCTATGGCATCGGTATGATATG
42711910 TGGTCCGTGT
Statistics
Matches: 80, Mismatches: 15, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
51 2 0.03
52 40 0.50
53 36 0.45
54 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (52 bp):
TGATTCCGTATAAGACCATATCCGGGCTATGGCATCGGTATGATATGATTCG
Found at i:42717131 original size:48 final size:48
Alignment explanation
Indices: 42717060--42717155 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
42717050 GGCCGAAAAC
42717060 GGGTTAATGGGCCAACAGGCCCAATTCAGTAAAGACGCTCGGTAAGTG
1 GGGTTAATGGGCCAACAGGCCCAATTCAGTAAAGACGCTCGGTAAGTG
*
42717108 GGGTTAATGGGCCAACGGGCCCAATTCAGTAAAGACGCTCGGTAAGTG
1 GGGTTAATGGGCCAACAGGCCCAATTCAGTAAAGACGCTCGGTAAGTG
42717156 TTTCTGTTGA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.28, C:0.21, G:0.32, T:0.19
Consensus pattern (48 bp):
GGGTTAATGGGCCAACAGGCCCAATTCAGTAAAGACGCTCGGTAAGTG
Found at i:42719678 original size:15 final size:15
Alignment explanation
Indices: 42719658--42719687 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
42719648 AAGTCCTAAG
*
42719658 AAAATAGAATTAGAA
1 AAAATAGAAATAGAA
42719673 AAAATAGAAATAGAA
1 AAAATAGAAATAGAA
42719688 TTCTTAGGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (15 bp):
AAAATAGAAATAGAA
Found at i:42724618 original size:60 final size:60
Alignment explanation
Indices: 42724540--42724676 Score: 172
Period size: 60 Copynumber: 2.3 Consensus size: 60
42724530 CAGTGTTAAC
* *
42724540 TGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCC-CTTAC-AGTATC-AGAGTATAT
1 TGGGCC-TAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAG--TCGAGA-TATAT
* *
42724601 TGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGTCGAGATATAT
1 TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
*
42724661 TGGGCCTTGCCCATAT
1 TGGGCCTAGCCCATAT
42724677 TAACACAGTT
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
60 53 0.78
61 13 0.19
62 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
TGGGCCTAGCCCATATCAATATCAATCTGGGCCATAGCCCTATTACAAGTCGAGATATAT
Found at i:42724640 original size:28 final size:27
Alignment explanation
Indices: 42724539--42724640 Score: 80
Period size: 28 Copynumber: 3.5 Consensus size: 27
42724529 TCAGTGTTAA
* *
42724539 CTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCC-TAGCCCATATCAGTATCAAT
*
42724567 CTGGGCCATAGCCCCT-TACAGTATCAGAGTAT
1 CTGGGCC-TAGCCCATAT-CAGTATC--A--AT
*
42724599 ATTGGGCCTAGCCCATATCAGTATCAAT
1 -CTGGGCCTAGCCCATATCAGTATCAAT
42724627 CTGGGCCGTAGCCC
1 CTGGGCC-TAGCCC
42724641 TATTACAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 16
0.72 0.09 0.20
Matches are distributed among these distances:
27 7 0.12
28 27 0.46
30 2 0.03
32 16 0.27
33 7 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (27 bp):
CTGGGCCTAGCCCATATCAGTATCAAT
Found at i:42724694 original size:20 final size:20
Alignment explanation
Indices: 42724669--42724714 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
42724659 ATTGGGCCTT
42724669 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
42724689 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
42724708 GCCCATA
1 GCCCATA
42724715 ACAAAACAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:42724723 original size:19 final size:20
Alignment explanation
Indices: 42724681--42724723 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 20
42724671 CCATATTAAC
** *
42724681 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
42724701 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
42724720 ACAG
1 ACAG
42724724 CCTCATATGA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.21
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:42726872 original size:15 final size:15
Alignment explanation
Indices: 42726835--42726863 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
42726825 TTTTCCTATC
42726835 TAATAATAATAATTA
1 TAATAATAATAATTA
42726850 TAATAATAATAATT
1 TAATAATAATAATT
42726864 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:42729882 original size:27 final size:28
Alignment explanation
Indices: 42729844--42729896 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
42729834 CTATTCAGAA
* *
42729844 ATCAGTATTAAT-TGGGCCTTAGCCCAT
1 ATCAATATTAATCTGGGCCATAGCCCAT
42729871 ATCAATATTAATCTGGGCCATAGCCC
1 ATCAATATTAATCTGGGCCATAGCCC
42729897 CTTACAGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 11 0.48
28 12 0.52
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (28 bp):
ATCAATATTAATCTGGGCCATAGCCCAT
Found at i:42729963 original size:61 final size:61
Alignment explanation
Indices: 42729821--42729992 Score: 167
Period size: 60 Copynumber: 2.8 Consensus size: 61
42729811 TCAAGCTTTA
* *
42729821 CTGGGCC-TAAGCCCTATT-CAGAAATCAGTATTA-ATTGGGCCTTAGCCCATATCAATATTAAT
1 CTGGGCCAT-AGCCCTATTACAG-AATCAG-AGTATATTGGGCC-TAGCCCATATCAATATCAAT
* *
42729883 CTGGGCCATAGCCC-CTTACAGAATCAGAGTATATTGGGCCTAGCCCATATCAGTATCAAT
1 CTGGGCCATAGCCCTATTACAGAATCAGAGTATATTGGGCCTAGCCCATATCAATATCAAT
* * * * * *
42729943 CTGGGTCGTATCCCTATTACA-AGTC-GAGATATATTGGGCCTTGTCCATAT
1 CTGGGCCATAGCCCTATTACAGAATCAGAG-TATATTGGGCCTAGCCCATAT
42729993 TAACACAATT
Statistics
Matches: 94, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
59 3 0.03
60 54 0.57
61 21 0.22
62 15 0.16
63 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (61 bp):
CTGGGCCATAGCCCTATTACAGAATCAGAGTATATTGGGCCTAGCCCATATCAATATCAAT
Found at i:42732316 original size:17 final size:19
Alignment explanation
Indices: 42732294--42732339 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
42732284 ACATACATGC
42732294 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
42732311 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
42732330 AATACTAATT
1 AATAATAATT
42732340 AAAATTTCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:42738135 original size:9 final size:10
Alignment explanation
Indices: 42738108--42738134 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
42738098 GGATAATTTT
42738108 ATTTTTTTCA
1 ATTTTTTTCA
42738118 ATTTTTTTCA
1 ATTTTTTTCA
42738128 ATTTTTT
1 ATTTTTT
42738135 CGGTTTCTAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.07, G:0.00, T:0.74
Consensus pattern (10 bp):
ATTTTTTTCA
Found at i:42741382 original size:12 final size:12
Alignment explanation
Indices: 42741365--42741393 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
42741355 ATTCATGAAG
42741365 AAATTTTTTAGA
1 AAATTTTTTAGA
42741377 AAATTTTTTAGA
1 AAATTTTTTAGA
42741389 AAATT
1 AAATT
42741394 CTTCTAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (12 bp):
AAATTTTTTAGA
Found at i:42751358 original size:4 final size:4
Alignment explanation
Indices: 42751349--42751387 Score: 51
Period size: 4 Copynumber: 9.5 Consensus size: 4
42751339 TTTATTTTCC
* *
42751349 TCTT TCTT TCTT TCTT TCTT TCCT TCCT TCTTT TCTT TC
1 TCTT TCTT TCTT TCTT TCTT TCTT TCTT TC-TT TCTT TC
42751388 CTTTTTTTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
4 29 0.91
5 3 0.09
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (4 bp):
TCTT
Found at i:42751388 original size:13 final size:13
Alignment explanation
Indices: 42751355--42751396 Score: 50
Period size: 13 Copynumber: 3.3 Consensus size: 13
42751345 TTCCTCTTTC
*
42751355 TTTCTTTCTTTC-
1 TTTCTTTCCTTCT
*
42751367 TTTCCTTCCTTCT
1 TTTCTTTCCTTCT
*
42751380 TTTCTTTCCTTTT
1 TTTCTTTCCTTCT
42751393 TTTC
1 TTTC
42751397 CCTTTTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
12 10 0.40
13 15 0.60
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTCTTTCCTTCT
Found at i:42751394 original size:12 final size:13
Alignment explanation
Indices: 42751350--42751396 Score: 53
Period size: 12 Copynumber: 3.7 Consensus size: 13
42751340 TTATTTTCCT
42751350 CTTTCTTTCTTT-
1 CTTTCTTTCTTTC
*
42751362 CTTTCTTTCCTTC
1 CTTTCTTTCTTTC
42751375 C-TTCTTTTCTTTC
1 CTTTC-TTTCTTTC
*
42751388 CTTTTTTTC
1 CTTTCTTTC
42751397 CCTTTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
12 14 0.48
13 13 0.45
14 2 0.07
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (13 bp):
CTTTCTTTCTTTC
Found at i:42753578 original size:43 final size:42
Alignment explanation
Indices: 42753465--42753578 Score: 147
Period size: 43 Copynumber: 2.7 Consensus size: 42
42753455 AATTGCCGAG
* * *
42753465 ATGAGATTACATGTAAGACCATGCCTGGGACATTTGCATTGT
1 ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
* *
42753507 ATTGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCGAT
1 A-TGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCG-T
* *
42753551 ATGAGATAACATGTAAGACCATATCTGG
1 ATGAGATTACATGTAAGACCATGTCTGG
42753579 TATATGGCAT
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 58 0.95
44 2 0.03
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (42 bp):
ATGAGATTACATGTAAGACCATGTCTGGGACATTGGCATCGT
Found at i:42757075 original size:27 final size:27
Alignment explanation
Indices: 42757037--42757089 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
42757027 TTTTCCTGAA
*
42757037 ACTAGGCTCATATATATTCTTACCATG
1 ACTAGACTCATATATATTCTTACCATG
42757064 ACTAGACTCATATATATTCTTACCAT
1 ACTAGACTCATATATATTCTTACCAT
42757090 AAAATTTTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.38
Consensus pattern (27 bp):
ACTAGACTCATATATATTCTTACCATG
Found at i:42758061 original size:18 final size:20
Alignment explanation
Indices: 42758046--42758082 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
42758036 TAATAATAAA
*
42758046 ATATCTCATTAAAATAATAT
1 ATATCTAATTAAAATAATAT
42758066 ATATCTAATT-AAATAAT
1 ATATCTAATTAAAATAAT
42758083 CATAAAATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.51, C:0.08, G:0.00, T:0.41
Consensus pattern (20 bp):
ATATCTAATTAAAATAATAT
Found at i:42760626 original size:13 final size:12
Alignment explanation
Indices: 42760601--42760625 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
42760591 TTTATCTAAC
42760601 ATTTTAAAAAAA
1 ATTTTAAAAAAA
42760613 ATTTTAAAAAAA
1 ATTTTAAAAAAA
42760625 A
1 A
42760626 AGAAAGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (12 bp):
ATTTTAAAAAAA
Found at i:42762125 original size:2 final size:2
Alignment explanation
Indices: 42762118--42762149 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
42762108 GAATCAGATC
42762118 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
42762150 CTGCAACCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:42775751 original size:68 final size:68
Alignment explanation
Indices: 42775625--42775752 Score: 157
Period size: 68 Copynumber: 1.9 Consensus size: 68
42775615 TCCCCAAGTC
* * *
42775625 AAGTACTTCATCTTCTCAGGCACTTAGCTTTTCAAAGCTTTTGACCTGCCCAGTTCACATACTTC
1 AAGTACTTCATCTTCTCAAGCACTTAGCTTTTCAAAGCTTTTGACCAGCCCAGGTCACATACTTC
42775690 TTA
66 TTA
** * * * * **
42775693 AAGTACTTTGTCTTCTCAAGCGCTTGGCTTTTTACAGCTTTTGACCAGCTTAGGTCACAT
1 AAGTACTTCATCTTCTCAAGCACTTAGCTTTTCAAAGCTTTTGACCAGCCCAGGTCACAT
42775753 TCACCTTCTC
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
68 49 1.00
ACGTcount: A:0.22, C:0.26, G:0.15, T:0.38
Consensus pattern (68 bp):
AAGTACTTCATCTTCTCAAGCACTTAGCTTTTCAAAGCTTTTGACCAGCCCAGGTCACATACTTC
TTA
Found at i:42781422 original size:8 final size:8
Alignment explanation
Indices: 42781380--42781404 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
42781370 TATATGACTA
42781380 AATAAAAT
1 AATAAAAT
42781388 AATAAAAT
1 AATAAAAT
42781396 AATAAAAT
1 AATAAAAT
42781404 A
1 A
42781405 TCTTATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:42781444 original size:31 final size:31
Alignment explanation
Indices: 42781392--42781450 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
42781382 TAAAATAATA
*
42781392 AAATAATAAAATATCTTATTAAAATATTAAAT
1 AAATAATAAAATATCTAATT-AAATATTAAAT
*
42781424 AAATAAT-AATTATCTAATTAAATATTA
1 AAATAATAAAATATCTAATTAAATATTA
42781451 TAAAATATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 8 0.32
31 10 0.40
32 7 0.28
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (31 bp):
AAATAATAAAATATCTAATTAAATATTAAAT
Found at i:42784395 original size:21 final size:21
Alignment explanation
Indices: 42784371--42784411 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
42784361 CATGGCAGAG
42784371 TAGTTTGTCTCAGAAGCAATT
1 TAGTTTGTCTCAGAAGCAATT
42784392 TAGTTTGTCTCAGAAGCAAT
1 TAGTTTGTCTCAGAAGCAAT
42784412 ATTTGAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.37
Consensus pattern (21 bp):
TAGTTTGTCTCAGAAGCAATT
Found at i:42789987 original size:43 final size:43
Alignment explanation
Indices: 42789898--42789991 Score: 111
Period size: 43 Copynumber: 2.2 Consensus size: 43
42789888 ACACTTGAAA
* * *
42789898 TTAAAACTTAGAAAAGAGGCCCAATAGAGCCGCAGTATTGCTGT
1 TTAAAACTAAGAAAAGAAGCCCAATA-AGCCGCAGTATTGATGT
*
42789942 TTAAAACTAAGAAAAAGAAGCCCAAT-AGCCG-AGCTGTTGATGT
1 TTAAAACTAAG-AAAAGAAGCCCAATAAGCCGCAG-TATTGATGT
42789985 TTAAAAC
1 TTAAAAC
42789992 CCATTTTGGT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
42 2 0.05
43 19 0.43
44 10 0.23
45 13 0.30
ACGTcount: A:0.40, C:0.17, G:0.20, T:0.22
Consensus pattern (43 bp):
TTAAAACTAAGAAAAGAAGCCCAATAAGCCGCAGTATTGATGT
Found at i:42792068 original size:14 final size:14
Alignment explanation
Indices: 42792049--42792076 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
42792039 ATGCTCACGG
42792049 TATAACTAATTAAT
1 TATAACTAATTAAT
42792063 TATAACTAATTAAT
1 TATAACTAATTAAT
42792077 CGTCTTTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (14 bp):
TATAACTAATTAAT
Found at i:42796711 original size:49 final size:49
Alignment explanation
Indices: 42796639--42796736 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
42796629 TTTACAATAC
*
42796639 ATTGTTGAAAAGAAGCTATTCACAAGCTTAATCAAACTCTCAAATTAGT
1 ATTGTTGAAAAGAAGCTATTCACAAGCTTAATCAAACTCTCAAACTAGT
42796688 ATTGTTGAAAAGAAGCTATTCACAAGCTTAATCAAACTCTCAAACTAGT
1 ATTGTTGAAAAGAAGCTATTCACAAGCTTAATCAAACTCTCAAACTAGT
42796737 CAATTTATCT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.30
Consensus pattern (49 bp):
ATTGTTGAAAAGAAGCTATTCACAAGCTTAATCAAACTCTCAAACTAGT
Found at i:42802828 original size:2 final size:2
Alignment explanation
Indices: 42802821--42802845 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
42802811 GGCCGAATGT
42802821 AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC A
42802846 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:42804667 original size:26 final size:26
Alignment explanation
Indices: 42804631--42804711 Score: 162
Period size: 26 Copynumber: 3.1 Consensus size: 26
42804621 GGTACAAATC
42804631 GATAATGGGTTAGGTAAATGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
42804657 GATAATGGGTTAGGTAAATGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
42804683 GATAATGGGTTAGGTAAATGTTCCAT
1 GATAATGGGTTAGGTAAATGTTCCAT
42804709 GAT
1 GAT
42804712 GGGCATTTCA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
GATAATGGGTTAGGTAAATGTTCCAT
Found at i:42816819 original size:14 final size:15
Alignment explanation
Indices: 42816793--42816822 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
42816783 CTAGTTTTTC
42816793 CTTTCTCTTTTCTTT
1 CTTTCTCTTTTCTTT
42816808 CTTTCT-TTTTCTTT
1 CTTTCTCTTTTCTTT
42816822 C
1 C
42816823 CCTGTTTCGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (15 bp):
CTTTCTCTTTTCTTT
Found at i:42816918 original size:18 final size:17
Alignment explanation
Indices: 42816883--42816915 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
42816873 CTTTTTATTC
42816883 TTTTATTATTTCATTTA
1 TTTTATTATTTCATTTA
42816900 TTTTACTTATTT-ATTT
1 TTTTA-TTATTTCATTT
42816916 TATCATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTTCATTTA
Found at i:42817342 original size:15 final size:14
Alignment explanation
Indices: 42817324--42817354 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
42817314 TTAATTTATT
42817324 TAATAATAATGCTAA
1 TAATAATAAT-CTAA
42817339 TAATAATAATCTAA
1 TAATAATAATCTAA
42817353 TA
1 TA
42817355 TAAAACCATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.38
15 10 0.62
ACGTcount: A:0.55, C:0.06, G:0.03, T:0.35
Consensus pattern (14 bp):
TAATAATAATCTAA
Found at i:42817365 original size:21 final size:20
Alignment explanation
Indices: 42817341--42817409 Score: 70
Period size: 21 Copynumber: 3.4 Consensus size: 20
42817331 AATGCTAATA
42817341 ATAATAATCTAATATAAAACC
1 ATAATAAT-TAATATAAAACC
* **
42817362 ATAAT-GTTAAT-TAATAATT
1 ATAATAATTAATATAA-AACC
42817381 ATAATAATTTAATATAAAACC
1 ATAATAA-TTAATATAAAACC
42817402 ATAATAAT
1 ATAATAAT
42817410 AATCATTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
18 3 0.08
19 11 0.29
20 2 0.05
21 19 0.50
22 3 0.08
ACGTcount: A:0.55, C:0.07, G:0.01, T:0.36
Consensus pattern (20 bp):
ATAATAATTAATATAAAACC
Found at i:42817405 original size:27 final size:28
Alignment explanation
Indices: 42817375--42817427 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
42817365 ATGTTAATTA
*
42817375 ATAATTATAATAATT-TAATATAAAACC
1 ATAATAATAATAATTATAATATAAAACC
*
42817402 ATAATAATAATCATTATAATATAAAA
1 ATAATAATAATAATTATAATATAAAA
42817428 ACCTAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (28 bp):
ATAATAATAATAATTATAATATAAAACC
Found at i:42821628 original size:27 final size:27
Alignment explanation
Indices: 42821597--42821659 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
42821587 AATCCTCTAT
42821597 AACACACCAGTATAAT-ATAGCCTCCCA
1 AACACACCAGTAT-ATCATAGCCTCCCA
* * *
42821624 AACACTCCGGTATATCATATCCTCCCA
1 AACACACCAGTATATCATAGCCTCCCA
42821651 AACACACCA
1 AACACACCA
42821660 ATAAGGTATT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.07
27 28 0.93
ACGTcount: A:0.38, C:0.37, G:0.06, T:0.19
Consensus pattern (27 bp):
AACACACCAGTATATCATAGCCTCCCA
Found at i:42824737 original size:24 final size:21
Alignment explanation
Indices: 42824687--42824729 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
42824677 CATAACGACC
42824687 TTCAACTGGCCCCCCCAATTA
1 TTCAACTGGCCCCCCCAATTA
42824708 TTCAACTGGCCCCCCCAATTA
1 TTCAACTGGCCCCCCCAATTA
42824729 T
1 T
42824730 ACTCCAACCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.23, C:0.42, G:0.09, T:0.26
Consensus pattern (21 bp):
TTCAACTGGCCCCCCCAATTA
Found at i:42838926 original size:30 final size:30
Alignment explanation
Indices: 42838892--42838951 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
42838882 ACTTAACAAG
**
42838892 CAAATACCTCTAAAATAATAATGAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
* *
42838922 CAAATGCCTTTAAAATAATAACAAAATTAA
1 CAAATACCTCTAAAATAATAACAAAATTAA
42838952 TAATAAAATA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.57, C:0.13, G:0.03, T:0.27
Consensus pattern (30 bp):
CAAATACCTCTAAAATAATAACAAAATTAA
Found at i:42841613 original size:48 final size:48
Alignment explanation
Indices: 42841539--42841696 Score: 192
Period size: 48 Copynumber: 3.3 Consensus size: 48
42841529 TACTCGTTTG
* * * *
42841539 GGTTAAATCTACATGAACAATAAATAATAGTTCTTGGTTACCCGTTAA
1 GGTTAAACCTACACGAATAATGAATAATAGTTCTTGGTTACCCGTTAA
* * ** *
42841587 GGTTAAACCTATACGAATAATGAATAATAGTGT-TTAGTTACCTATTAG
1 GGTTAAACCTACACGAATAATGAATAATAGT-TCTTGGTTACCCGTTAA
* * *
42841635 GGTTAAACCTACACGAATAATTAATATTAGTGCTTGGTTACCCGTTAA
1 GGTTAAACCTACACGAATAATGAATAATAGTTCTTGGTTACCCGTTAA
42841683 GGTTAAACCTACAC
1 GGTTAAACCTACAC
42841697 TATAAATATC
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
48 90 0.99
49 1 0.01
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (48 bp):
GGTTAAACCTACACGAATAATGAATAATAGTTCTTGGTTACCCGTTAA
Found at i:42842655 original size:16 final size:16
Alignment explanation
Indices: 42842620--42842675 Score: 55
Period size: 15 Copynumber: 3.6 Consensus size: 16
42842610 TTAACTTATT
*
42842620 ATTTAATT-ATAATTA
1 ATTTAATTAATCATTA
*
42842635 GTTTAATTAATCATTA
1 ATTTAATTAATCATTA
42842651 ATTTAA-TAA-CATTA
1 ATTTAATTAATCATTA
*
42842665 ACCTTAATTAA
1 A-TTTAATTAA
42842676 CAGTTTTGGT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
14 6 0.18
15 14 0.41
16 14 0.41
ACGTcount: A:0.45, C:0.07, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTTAATTAATCATTA
Found at i:42844790 original size:27 final size:26
Alignment explanation
Indices: 42844730--42844791 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
42844720 ATAAGACTCC
42844730 ATTTTATTAGGATAATTAATATTAAG
1 ATTTTATTAGGATAATTAATATTAAG
* * * *
42844756 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
42844784 ATTTTATT
1 ATTTTATT
42844792 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.52
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:42850926 original size:33 final size:33
Alignment explanation
Indices: 42850884--42850950 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
42850874 TATTTCCAGG
*
42850884 TAAGCTTCGATCTCGGTGGCAAGGACCTTTTAT
1 TAAGCTTCGATCTCGGTGGCAAAGACCTTTTAT
42850917 TAAGCTTCGATCTCGGTGGCAAAGACCTTTTAT
1 TAAGCTTCGATCTCGGTGGCAAAGACCTTTTAT
42850950 T
1 T
42850951 GTGACTGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.34
Consensus pattern (33 bp):
TAAGCTTCGATCTCGGTGGCAAAGACCTTTTAT
Found at i:42851160 original size:5 final size:5
Alignment explanation
Indices: 42851150--42851204 Score: 55
Period size: 5 Copynumber: 11.4 Consensus size: 5
42851140 GCAACCCAAT
*
42851150 TTTTA TTTTA TTTTA -TTTA TTTTTA TTTT- TATTTA TTTTA TCTTA --TTA
1 TTTTA TTTTA TTTTA TTTTA -TTTTA TTTTA T-TTTA TTTTA TTTTA TTTTA
42851198 TTTTA TT
1 TTTTA TT
42851205 ATTTATTATT
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
3 3 0.07
4 5 0.12
5 30 0.70
6 5 0.12
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:42851209 original size:20 final size:19
Alignment explanation
Indices: 42851148--42851211 Score: 76
Period size: 20 Copynumber: 3.2 Consensus size: 19
42851138 AGGCAACCCA
42851148 ATTTTTATTTTATTTTATTT
1 ATTTTTATTTTA-TTTATTT
42851168 ATTTTTATTTTTATTTATTTT
1 ATTTTTA-TTTTATTTA-TTT
42851189 ATCTTATTATTTTA-TTATTT
1 AT-TT-TTATTTTATTTATTT
42851209 ATT
1 ATT
42851212 ATTTTCAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
19 1 0.03
20 16 0.40
21 13 0.32
22 7 0.17
23 3 0.08
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.77
Consensus pattern (19 bp):
ATTTTTATTTTATTTATTT
Found at i:42852766 original size:15 final size:15
Alignment explanation
Indices: 42852746--42852775 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
42852736 CATTTTATTT
*
42852746 ATATTAGGATAATTA
1 ATATTAAGATAATTA
42852761 ATATTAAGATAATTA
1 ATATTAAGATAATTA
42852776 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:42852819 original size:10 final size:10
Alignment explanation
Indices: 42852800--42852831 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
42852790 ATTTAGGATT
42852800 TTAT-TTTAA
1 TTATCTTTAA
42852809 TTATCTTTAA
1 TTATCTTTAA
42852819 TTATCTTTAA
1 TTATCTTTAA
42852829 TTA
1 TTA
42852832 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:42857018 original size:34 final size:34
Alignment explanation
Indices: 42856980--42857047 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
42856970 GACAAAGAGT
42856980 AAGTGAGACACCGTAAGACTCCCATGGCAAATAA
1 AAGTGAGACACCGTAAGACTCCCATGGCAAATAA
42857014 AAGTGAGACACCGTAAGACTCCCATGGCAAATAA
1 AAGTGAGACACCGTAAGACTCCCATGGCAAATAA
42857048 CGATCCCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.24, G:0.21, T:0.15
Consensus pattern (34 bp):
AAGTGAGACACCGTAAGACTCCCATGGCAAATAA
Found at i:42858357 original size:2 final size:2
Alignment explanation
Indices: 42858350--42858413 Score: 128
Period size: 2 Copynumber: 32.0 Consensus size: 2
42858340 TTTTCACACG
42858350 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
42858392 CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT
42858414 TTGCGGAGAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 62 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:42862572 original size:2 final size:2
Alignment explanation
Indices: 42862560--42862591 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
42862550 AGAAGGCTTT
42862560 TA TA T- TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
42862592 GTAAAGTACC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:42864173 original size:3 final size:3
Alignment explanation
Indices: 42864165--42864330 Score: 67
Period size: 3 Copynumber: 56.7 Consensus size: 3
42864155 ATATTCACCC
* * **
42864165 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT ACGT ATT AAAT GGT AA-
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A-AT AAT -AAT AAT AAT
* * * * ** * * *
42864211 AAG AAT AAT AGT AAC AAT -GT TTT AA- AAT GAT AAT AGT AAT AA- AAA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * *
42864256 AAT AA- AA- AAT AAG AGT GAT AAT AAT AGT AAT AAT AAT AGT AAT AGT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* *
42864302 AAT AA- AAGT AAA AAT AAT AGT AAT AAT AA
1 AAT AAT AA-T AAT AAT AAT AAT AAT AAT AA
42864331 CGGTAAATAC
Statistics
Matches: 117, Mismatches: 37, Indels: 18
0.68 0.22 0.10
Matches are distributed among these distances:
2 13 0.11
3 98 0.84
4 6 0.05
ACGTcount: A:0.60, C:0.01, G:0.10, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:42864304 original size:27 final size:27
Alignment explanation
Indices: 42864274--42864326 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
42864264 ATAAGAGTGA
* *
42864274 TAATAATAGTAATAATAATAGTAATAG
1 TAATAAAAGTAAAAATAATAGTAATAG
42864301 TAATAAAAGTAAAAATAATAGTAATA
1 TAATAAAAGTAAAAATAATAGTAATA
42864327 ATAACGGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.30
Consensus pattern (27 bp):
TAATAAAAGTAAAAATAATAGTAATAG
Found at i:42864357 original size:12 final size:12
Alignment explanation
Indices: 42864240--42864357 Score: 78
Period size: 12 Copynumber: 9.5 Consensus size: 12
42864230 TTTTAAAATG
42864240 ATAATAGTAATA
1 ATAATAGTAATA
* * *
42864252 A-AAAAATAAAAA
1 ATAATAGT-AATA
* *
42864264 ATAAGAGTGATA
1 ATAATAGTAATA
42864276 ATAATAGTAATA
1 ATAATAGTAATA
42864288 ATAATAGTAATAGTA
1 ATAATAGT-A-A-TA
* *
42864303 ATAAAAGTAAAA
1 ATAATAGTAATA
42864315 ATAATAGTAATA
1 ATAATAGTAATA
**
42864327 ATAACGGTAAATA
1 ATAATAGT-AATA
42864340 CA-AATAGTAATA
1 -ATAATAGTAATA
*
42864352 ACAATA
1 ATAATA
42864358 AGACAAATAA
Statistics
Matches: 81, Mismatches: 17, Indels: 16
0.71 0.15 0.14
Matches are distributed among these distances:
11 5 0.06
12 50 0.62
13 14 0.17
14 3 0.04
15 9 0.11
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (12 bp):
ATAATAGTAATA
Found at i:42864536 original size:3 final size:3
Alignment explanation
Indices: 42864528--42864589 Score: 83
Period size: 3 Copynumber: 21.0 Consensus size: 3
42864518 AAAGGAAAAT
* *
42864528 ATA ATA ATA ATA ATA GCT- ATA AT- ACA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
42864572 ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA
42864590 CATTGGATAG
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
2 2 0.04
3 49 0.94
4 1 0.02
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:42864751 original size:16 final size:16
Alignment explanation
Indices: 42864688--42864751 Score: 51
Period size: 16 Copynumber: 3.9 Consensus size: 16
42864678 CAAAATAAAG
42864688 TAATAAAAATAATACTA
1 TAATAAAAATAATA-TA
* *
42864705 T-ATATAAAT-ATGTA
1 TAATAAAAATAATATA
* *
42864719 TACATATACATACATATA
1 TA-ATAAAAATA-ATATA
42864737 TAATAAAAATAATAT
1 TAATAAAAATAATAT
42864752 GCACTAATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
14 3 0.08
15 2 0.05
16 18 0.49
17 8 0.22
18 6 0.16
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (16 bp):
TAATAAAAATAATATA
Found at i:42864768 original size:9 final size:9
Alignment explanation
Indices: 42864756--42864789 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
42864746 TAATATGCAC
42864756 TAATATTAA
1 TAATATTAA
*
42864765 TAATAATAA
1 TAATATTAA
*
42864774 TAATAGTAA
1 TAATATTAA
42864783 TAATATT
1 TAATATT
42864790 GAAATACAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (9 bp):
TAATATTAA
Found at i:42864810 original size:74 final size:71
Alignment explanation
Indices: 42864625--42864850 Score: 194
Period size: 74 Copynumber: 3.1 Consensus size: 71
42864615 TAATATGGTG
*
42864625 ATAATAGTAATAATATTGAAATACAAAAAGC--ATATATAATATAATAAAAATATCAAAATAAAG
1 ATAATAGTAATAATATTGAAATACAAAAAGCAAATATATAATA-AA-AATAATATCAAAATAAAG
42864688 TAATAAAA
64 TAATAAAA
* * * * *
42864696 ATAATACTATATATAAATATG-TATACATATA-CATACATATATAATAAAAATAATATGCACTAA
1 ATAATAGTA-ATA-ATAT-TGAAATACAAAAAGCA-A-ATATATAATAAAAATAATAT-CA--AA
* *
42864759 TATTAA-TAATAATA
58 -ATAAAGTAATAAAA
* * *
42864773 ATAATAGTAATAATATTGAAATACAAAAAGCAAATATA-ACATAATAATAATGTTAAAATAAAGT
1 ATAATAGTAATAATATTGAAATACAAAAAGCAAATATATA-ATAAAAATAATATCAAAATAAAGT
42864837 AATTAAAA
65 AA-TAAAA
42864845 ATAATA
1 ATAATA
42864851 CTATATATAC
Statistics
Matches: 121, Mismatches: 18, Indels: 31
0.71 0.11 0.18
Matches are distributed among these distances:
70 4 0.03
71 13 0.11
72 14 0.12
73 12 0.10
74 27 0.22
75 15 0.12
76 15 0.12
77 17 0.14
78 4 0.03
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (71 bp):
ATAATAGTAATAATATTGAAATACAAAAAGCAAATATATAATAAAAATAATATCAAAATAAAGTA
ATAAAA
Found at i:42866618 original size:45 final size:44
Alignment explanation
Indices: 42866538--42866635 Score: 101
Period size: 45 Copynumber: 2.2 Consensus size: 44
42866528 TGATTTATAG
* * * *
42866538 CTTCAATTTGTTCCACTGCAACTTTAGGGAAATAAGATTTGCT-A
1 CTTCAATCTCTTCCACTGCAACTTTAGAGAAATAAGACTTG-TGA
* *
42866582 TCTTCAATCTCTTCCGCTGCAA-TTTCAGAGAGATAAGACTTGTGA
1 -CTTCAATCTCTTCCACTGCAACTTT-AGAGAAATAAGACTTGTGA
42866627 CTTCAATCT
1 CTTCAATCT
42866636 ACTTTGCTGA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
44 13 0.29
45 32 0.71
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (44 bp):
CTTCAATCTCTTCCACTGCAACTTTAGAGAAATAAGACTTGTGA
Found at i:42867019 original size:64 final size:64
Alignment explanation
Indices: 42866888--42867007 Score: 195
Period size: 64 Copynumber: 1.9 Consensus size: 64
42866878 TAAAAAATTG
* * * *
42866888 AAAATACCTCAGTGTGTGACCTGAGGCTCAACTCACCTCTCGTAATATAAGTTGATAGAAACTA
1 AAAATACCTCAGCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATAAGTTGATAGAAACTA
*
42866952 AAAATACCTCAGCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AAAATACCTCAGCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATAAGTTGAT
42867008 TTTTTTGAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
64 51 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (64 bp):
AAAATACCTCAGCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATAAGTTGATAGAAACTA
Found at i:42867074 original size:77 final size:77
Alignment explanation
Indices: 42866952--42867257 Score: 427
Period size: 77 Copynumber: 4.0 Consensus size: 77
42866942 ATAGAAACTA
* *
42866952 AAAATACCTCAGCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCTTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
42867017 AAACAGAAATTG
66 AAACAGAAATTG
* * *
42867029 AAAATACCTCGGCTTGTGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCTTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
* * *
42867094 AAATAGGAACT-
66 AAACAGAAATTG
* * *
42867105 AAAGATACCTCA-ATGTATGACCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
1 AAA-ATACCTCAGCT-TGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
42867169 AAAAACAGAAATTG
64 AAAAACAGAAATTG
* * * ** *
42867183 AAAATATCTCATCATGTGGGCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTGAA
1 AAAATACCTCAGCTTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
42867248 AAACAGAAAT
66 AAACAGAAAT
42867258 AAAAATATCA
Statistics
Matches: 200, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
76 4 0.02
77 193 0.96
78 3 0.01
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (77 bp):
AAAATACCTCAGCTTGTGACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTGAA
AAACAGAAATTG
Found at i:42867076 original size:141 final size:141
Alignment explanation
Indices: 42866882--42867238 Score: 401
Period size: 154 Copynumber: 2.4 Consensus size: 141
42866872 AAAAAGTAAA
* *
42866882 AAATTGAAAATACCTCAG-TGTGTGACCTGAGGCTCAACTCACCTCTCGTAATATAAGTTGATAG
1 AAATTGAAAATACCTCAGCT-TGTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATAG
* *
42866946 AAACTAAAAATACCTCAGCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
65 AAACTAAAAATACCTCAACGTATGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
42867011 TTTGAAAAACAG
130 TTTGAAAAACAG
* * *
42867023 AAATTGAAAATACCTCGGCTTGTGTCCCGAGGCTCAACTCACCTCTTGCAATATGAGTTGATTTT
1 AAATTGAAAATACCTCAGCTTGTGACCCGAGGCTCAACTCACCTCTCGCAATAT-A----A----
* * * * * *
42867088 TTTGAAAAATAGGAACTAAAGATACCTCAATGTATGACCCGAGGCTTAACTCACCTCTCGCAATA
57 GTTG----ATAGAAACTAAAAATACCTCAACGTATGACCCGAAGCTCAACTCACCTCTCGCAATA
42867153 TGAGTTGATTTTTTTGAAAAACAG
118 TGAGTTGATTTTTTTGAAAAACAG
* * * ** * *
42867177 AAATTGAAAATATCTCATCATGTGGGCCGAGGCTCAACTCACCTCTCGCAACATGAGTTGAT
1 AAATTGAAAATACCTCAGCTTGTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGAT
42867239 TTTTTTGAAA
Statistics
Matches: 179, Mismatches: 23, Indels: 28
0.78 0.10 0.12
Matches are distributed among these distances:
141 49 0.27
142 2 0.01
145 3 0.02
146 1 0.01
149 1 0.01
150 3 0.02
154 120 0.67
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (141 bp):
AAATTGAAAATACCTCAGCTTGTGACCCGAGGCTCAACTCACCTCTCGCAATATAAGTTGATAGA
AACTAAAAATACCTCAACGTATGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
TTGAAAAACAG
Found at i:42867233 original size:154 final size:154
Alignment explanation
Indices: 42866942--42867264 Score: 495
Period size: 154 Copynumber: 2.1 Consensus size: 154
42866932 ATATAAGTTG
* *
42866942 ATAGAAACTAAAAATACCTCAGCGTGTGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAACGTATGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGA
* * * *
42867007 TTTTTTTGAAAAACAGAAATTGAAAATACCTCGGCTTGTGTCCCGAGGCTCAACTCACCTCTTGC
66 TTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTGGCCCGAGGCTCAACTCACCTCTCGC
*
42867072 AATATGAGTTGATTTTTTTGAAAA
131 AACATGAGTTGATTTTTTTGAAAA
* * * * *
42867096 ATAGGAACTAAAGATACCTCAATGTATGACCCGAGGCTTAACTCACCTCTCGCAATATGAGTTGA
1 ATAGAAACTAAAAATACCTCAACGTATGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGA
* * *
42867161 TTTTTTTGAAAAACAGAAATTGAAAATATCTCATCATGTGGGCCGAGGCTCAACTCACCTCTCGC
66 TTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTGGCCCGAGGCTCAACTCACCTCTCGC
42867226 AACATGAGTTGATTTTTTTGAAAA
131 AACATGAGTTGATTTTTTTGAAAA
*
42867250 ACAGAAA-TAAAAATA
1 ATAGAAACTAAAAATA
42867265 TCATGTTACC
Statistics
Matches: 151, Mismatches: 18, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
153 7 0.05
154 144 0.95
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (154 bp):
ATAGAAACTAAAAATACCTCAACGTATGACCCGAAGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTGGCCCGAGGCTCAACTCACCTCTCGC
AACATGAGTTGATTTTTTTGAAAA
Found at i:42871190 original size:28 final size:28
Alignment explanation
Indices: 42871137--42871220 Score: 132
Period size: 28 Copynumber: 3.0 Consensus size: 28
42871127 CACTTTGTGC
42871137 TATTCTGGTGTGTTTTGGATGGATTATAT
1 TATTCTGGTGTGTTTTGGA-GGATTATAT
*
42871166 TATTCTGGTGTGTTTGGGAGGATTATAT
1 TATTCTGGTGTGTTTTGGAGGATTATAT
* *
42871194 GATACTGGTGTGTTTTGGAGGATTATA
1 TATTCTGGTGTGTTTTGGAGGATTATA
42871221 CTGGTGTGTT
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
28 33 0.65
29 18 0.35
ACGTcount: A:0.19, C:0.04, G:0.31, T:0.46
Consensus pattern (28 bp):
TATTCTGGTGTGTTTTGGAGGATTATAT
Found at i:42871232 original size:23 final size:24
Alignment explanation
Indices: 42871141--42871234 Score: 91
Period size: 28 Copynumber: 3.6 Consensus size: 24
42871131 TTGTGCTATT
42871141 CTGGTGTGTTTTGGATGGATTATATTA
1 CTGGTGTGTTTTGGA-GGA-TATA-TA
*
42871168 TTCTGGTGTGTTTGGGAGGATTATATGATA
1 --CTGGTGTGTTTTGGAGG---ATAT-ATA
42871198 CTGGTGTGTTTTGGAGGAT-TATA
1 CTGGTGTGTTTTGGAGGATATATA
42871221 CTGGTGTGTTTTGG
1 CTGGTGTGTTTTGG
42871235 TTGGACATTT
Statistics
Matches: 59, Mismatches: 2, Indels: 14
0.79 0.03 0.19
Matches are distributed among these distances:
23 17 0.29
24 1 0.02
25 2 0.03
28 18 0.31
29 14 0.24
30 5 0.08
31 2 0.03
ACGTcount: A:0.16, C:0.04, G:0.34, T:0.46
Consensus pattern (24 bp):
CTGGTGTGTTTTGGAGGATATATA
Found at i:42882912 original size:35 final size:34
Alignment explanation
Indices: 42882864--42882936 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 34
42882854 ACAGATCCAT
*
42882864 TCTCTTCGCAATATCTGGATGGTTTTGAACTAAA
1 TCTCTTCACAATATCTGGATGGTTTTGAACTAAA
*
42882898 CTCTCTTCATAATATCTGGATGGTTTTGAACTAAA
1 -TCTCTTCACAATATCTGGATGGTTTTGAACTAAA
42882933 TCTC
1 TCTC
42882937 GTAGAGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
34 4 0.11
35 32 0.89
ACGTcount: A:0.26, C:0.19, G:0.15, T:0.40
Consensus pattern (34 bp):
TCTCTTCACAATATCTGGATGGTTTTGAACTAAA
Found at i:42883622 original size:22 final size:23
Alignment explanation
Indices: 42883597--42883642 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
42883587 CAACCAAATC
42883597 AATTCA-ACATATTT-TCAAGATA
1 AATTCATACATATTTAT-AAGATA
*
42883619 AATTCATGCATATTTATAAGATA
1 AATTCATACATATTTATAAGATA
42883642 A
1 A
42883643 CGTCATCACA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 6 0.29
23 14 0.67
24 1 0.05
ACGTcount: A:0.46, C:0.11, G:0.07, T:0.37
Consensus pattern (23 bp):
AATTCATACATATTTATAAGATA
Found at i:42883648 original size:23 final size:23
Alignment explanation
Indices: 42883604--42883648 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
42883594 ATCAATTCAA
*
42883604 CATATTTTCAAGATAAATTCATG
1 CATATTTTCAAGATAAAGTCATG
*
42883627 CATATTTAT-AAGATAACGTCAT
1 CATATTT-TCAAGATAAAGTCAT
42883649 CACATATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.40, C:0.13, G:0.09, T:0.38
Consensus pattern (23 bp):
CATATTTTCAAGATAAAGTCATG
Found at i:42887487 original size:30 final size:29
Alignment explanation
Indices: 42887453--42887509 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 29
42887443 TAGAATAAAA
*
42887453 AATAACA-ATAATATTAATATATACACGAAT
1 AATAACAGA-AATAATAATA-ATACACGAAT
42887483 AATAACAGAAATAATAATAATACACGA
1 AATAACAGAAATAATAATAATACACGA
42887510 CAAGTCAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
29 8 0.32
30 16 0.64
31 1 0.04
ACGTcount: A:0.60, C:0.11, G:0.05, T:0.25
Consensus pattern (29 bp):
AATAACAGAAATAATAATAATACACGAAT
Found at i:42887723 original size:12 final size:12
Alignment explanation
Indices: 42887706--42887740 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
42887696 AAAATAATAC
42887706 TATATGTATAAA
1 TATATGTATAAA
*
42887718 TATATGTATATA
1 TATATGTATAAA
*
42887730 TACATGTATAA
1 TATATGTATAA
42887741 TGGAAACATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.09, T:0.43
Consensus pattern (12 bp):
TATATGTATAAA
Found at i:42887762 original size:3 final size:3
Alignment explanation
Indices: 42887754--42887779 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
42887744 AAACATACAC
42887754 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
42887780 CGTATTAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:42887884 original size:293 final size:293
Alignment explanation
Indices: 42887576--42888162 Score: 1174
Period size: 293 Copynumber: 2.0 Consensus size: 293
42887566 AAATTATGAC
42887576 ATGTTAACAAGGACAATAATAATAATTAATAATGCTAAATTAATTAATAATAAAACAATAAATAA
1 ATGTTAACAAGGACAATAATAATAATTAATAATGCTAAATTAATTAATAATAAAACAATAAATAA
42887641 ATTAACACAAAAAGGAAGACATATTATATAATAAAAATATTAAAATAAAGTAATTAAAATAATAC
66 ATTAACACAAAAAGGAAGACATATTATATAATAAAAATATTAAAATAAAGTAATTAAAATAATAC
42887706 TATATGTATAAATATATGTATATATACATGTATAATGGAAACATACACTAATAATAATAATAATA
131 TATATGTATAAATATATGTATATATACATGTATAATGGAAACATACACTAATAATAATAATAATA
42887771 ATAATAATACGTATTAAATGGTAAAAGAATAATAGTAACAATGTTTTAAAATGATAATAGTAATA
196 ATAATAATACGTATTAAATGGTAAAAGAATAATAGTAACAATGTTTTAAAATGATAATAGTAATA
42887836 AAAATAAAAAATAAGAGTGATAATAATAGTAAT
261 AAAATAAAAAATAAGAGTGATAATAATAGTAAT
42887869 ATGTTAACAAGGACAATAATAATAATTAATAATGCTAAATTAATTAATAATAAAACAATAAATAA
1 ATGTTAACAAGGACAATAATAATAATTAATAATGCTAAATTAATTAATAATAAAACAATAAATAA
42887934 ATTAACACAAAAAGGAAGACATATTATATAATAAAAATATTAAAATAAAGTAATTAAAATAATAC
66 ATTAACACAAAAAGGAAGACATATTATATAATAAAAATATTAAAATAAAGTAATTAAAATAATAC
42887999 TATATGTATAAATATATGTATATATACATGTATAATGGAAACATACACTAATAATAATAATAATA
131 TATATGTATAAATATATGTATATATACATGTATAATGGAAACATACACTAATAATAATAATAATA
42888064 ATAATAATACGTATTAAATGGTAAAAGAATAATAGTAACAATGTTTTAAAATGATAATAGTAATA
196 ATAATAATACGTATTAAATGGTAAAAGAATAATAGTAACAATGTTTTAAAATGATAATAGTAATA
42888129 AAAATAAAAAATAAGAGTGATAATAATAGTAAT
261 AAAATAAAAAATAAGAGTGATAATAATAGTAAT
42888162 A
1 A
42888163 ATAATAATAG
Statistics
Matches: 294, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
293 294 1.00
ACGTcount: A:0.57, C:0.05, G:0.09, T:0.30
Consensus pattern (293 bp):
ATGTTAACAAGGACAATAATAATAATTAATAATGCTAAATTAATTAATAATAAAACAATAAATAA
ATTAACACAAAAAGGAAGACATATTATATAATAAAAATATTAAAATAAAGTAATTAAAATAATAC
TATATGTATAAATATATGTATATATACATGTATAATGGAAACATACACTAATAATAATAATAATA
ATAATAATACGTATTAAATGGTAAAAGAATAATAGTAACAATGTTTTAAAATGATAATAGTAATA
AAAATAAAAAATAAGAGTGATAATAATAGTAAT
Found at i:42888016 original size:12 final size:12
Alignment explanation
Indices: 42887999--42888033 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
42887989 AAAATAATAC
42887999 TATATGTATAAA
1 TATATGTATAAA
*
42888011 TATATGTATATA
1 TATATGTATAAA
*
42888023 TACATGTATAA
1 TATATGTATAA
42888034 TGGAAACATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.46, C:0.03, G:0.09, T:0.43
Consensus pattern (12 bp):
TATATGTATAAA
Found at i:42888055 original size:3 final size:3
Alignment explanation
Indices: 42888047--42888208 Score: 66
Period size: 3 Copynumber: 55.0 Consensus size: 3
42888037 AAACATACAC
* * ** *
42888047 TAA TAA TAA TAA TAA TAA TAA TAA TACG TAT TAAA TGG TAA -AA GAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TAA TAA TAA
* * * ** * * *
42888093 TAA TAG TAA CAA T-G TTT TAA -AA TGA TAA TAG TAA TAA AAA TAA -AA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * * *
42888138 -AA TAA GAG TGA TAA TAA TAG TAA TAA TAA TAA TAG TAA TAG TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* *
42888185 -AA GTAA AAA TAA TAG TAA TAA TAA
1 TAA -TAA TAA TAA TAA TAA TAA TAA
42888209 CGGTAAATAC
Statistics
Matches: 113, Mismatches: 38, Indels: 16
0.68 0.23 0.10
Matches are distributed among these distances:
2 11 0.10
3 96 0.85
4 6 0.05
ACGTcount: A:0.59, C:0.01, G:0.10, T:0.30
Consensus pattern (3 bp):
TAA
Found at i:42888414 original size:3 final size:3
Alignment explanation
Indices: 42888406--42888452 Score: 53
Period size: 3 Copynumber: 16.0 Consensus size: 3
42888396 AAAGGAAAAT
* *
42888406 ATA ATA ATA ATA GCT- ATA AT- ACA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA -ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
42888450 ATA
1 ATA
42888453 CATTGGATAG
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
2 2 0.05
3 34 0.92
4 1 0.03
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:42888444 original size:20 final size:21
Alignment explanation
Indices: 42888406--42888446 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
42888396 AAAGGAAAAT
42888406 ATAATAATAATAGCTATAATACA
1 ATAATAATAATA-C-ATAATACA
42888429 ATAATAATAATA-ATAATA
1 ATAATAATAATACATAATA
42888447 ATAATACATT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
23 12 0.67
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (21 bp):
ATAATAATAATACATAATACA
Found at i:42888653 original size:143 final size:146
Alignment explanation
Indices: 42888488--42888760 Score: 401
Period size: 143 Copynumber: 1.9 Consensus size: 146
42888478 TAATATGGTG
* *
42888488 ATAATAGTAATAATATTGAAATACAAAAAGCATATATAATATAATAAAAATATCAAAATAAAGTA
1 ATAATAGTAATAATATTGAAATACAAAAAGCAAATATAACATAATAAAAATATCAAAATAAAGTA
* * * *
42888553 ATAAAAAATAATACTATATATA-A-ATATGTATACATATACATACA-TA-TATAATAAAAATAAT
66 ATAAAAAATAATACTAGATATACATATATATATAAATAAACATACACTACTAT-ATAAAAATAAT
42888614 ATGCACTAATATTAATA
130 ATGCACTAATATTAATA
* * * *
42888631 ATAATAGTAATAATATTGAAATACAAAAAGTAAATATAACATAATAATAATGTTAAAATAAAGTA
1 ATAATAGTAATAATATTGAAATACAAAAAGCAAATATAACATAATAAAAATATCAAAATAAAGTA
* *
42888696 ATTAAAAATAATACTAGATATACATATATATATAAATAAACATACACTACTATATAATAATAATA
66 ATAAAAAATAATACTAGATATACATATATATATAAATAAACATACACTACTATATAAAAATAATA
42888761 ATAATATAGA
Statistics
Matches: 114, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
143 79 0.69
144 1 0.01
145 18 0.16
146 13 0.11
147 3 0.03
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (146 bp):
ATAATAGTAATAATATTGAAATACAAAAAGCAAATATAACATAATAAAAATATCAAAATAAAGTA
ATAAAAAATAATACTAGATATACATATATATATAAATAAACATACACTACTATATAAAAATAATA
TGCACTAATATTAATA
Found at i:42890817 original size:10 final size:10
Alignment explanation
Indices: 42890802--42890829 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
42890792 ATTAGGGAAA
42890802 AAAGTAAAAC
1 AAAGTAAAAC
42890812 AAAGTAAAAC
1 AAAGTAAAAC
42890822 AAAGTAAA
1 AAAGTAAA
42890830 CATGTAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.71, C:0.07, G:0.11, T:0.11
Consensus pattern (10 bp):
AAAGTAAAAC
Found at i:42891504 original size:25 final size:25
Alignment explanation
Indices: 42891476--42891527 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
42891466 TTTGGCTTGA
**
42891476 CATTTACTAAGCAATATCGGATATT
1 CATTTACTAAGCAATATCAAATATT
* *
42891501 CATTTATTAGGCAATATCAAATATT
1 CATTTACTAAGCAATATCAAATATT
42891526 CA
1 CA
42891528 AATTAATCTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (25 bp):
CATTTACTAAGCAATATCAAATATT
Found at i:42896856 original size:21 final size:21
Alignment explanation
Indices: 42896810--42896856 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 21
42896800 CATATTAGAT
42896810 CAATAAAATTTTTTAATAAGTA
1 CAATAAAATTTTTT-ATAAGTA
*
42896832 -AATAAAATTATTTT-TATGTA
1 CAATAAAATT-TTTTATAAGTA
42896852 CAATA
1 CAATA
42896857 CAAAAATGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
20 5 0.23
21 13 0.59
22 4 0.18
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (21 bp):
CAATAAAATTTTTTATAAGTA
Found at i:42899444 original size:21 final size:21
Alignment explanation
Indices: 42899412--42899466 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 21
42899402 AAAGTTAAAT
* *
42899412 AGAAGCTCGTAAGAGCTGGAC
1 AGAAGCTTGTAAGAGCTGAAC
*
42899433 AGAATCTTGTAAGAGCTGAAC
1 AGAAGCTTGTAAGAGCTGAAC
42899454 AGAAGCTTGTAAG
1 AGAAGCTTGTAAG
42899467 TGTAATGCCC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.36, C:0.15, G:0.29, T:0.20
Consensus pattern (21 bp):
AGAAGCTTGTAAGAGCTGAAC
Found at i:42900668 original size:264 final size:264
Alignment explanation
Indices: 42900198--42900727 Score: 1060
Period size: 264 Copynumber: 2.0 Consensus size: 264
42900188 ATTTCTACTT
42900198 AAAACAAGTAGTATTTATCTCTAGGATTCCAAAAACTCAAAAATCATAAGAAAATGGGCTAAATT
1 AAAACAAGTAGTATTTATCTCTAGGATTCCAAAAACTCAAAAATCATAAGAAAATGGGCTAAATT
42900263 GACTTACCAAATTAACTTAGAACCTTTAAAACCTTATTTTTCCCTTTTTCTTTTTTTCCTTTCTC
66 GACTTACCAAATTAACTTAGAACCTTTAAAACCTTATTTTTCCCTTTTTCTTTTTTTCCTTTCTC
42900328 CCTTATCTGTTTCGTCCCCTGCTATTCTGTTTCTTTCCTCTTTTTATTCTTTTGTTTCTTTTATA
131 CCTTATCTGTTTCGTCCCCTGCTATTCTGTTTCTTTCCTCTTTTTATTCTTTTGTTTCTTTTATA
42900393 TATATATAATAACAATAATAACTATAATAAAAATCTATTTAATAACAAATATTTATTTAACACTT
196 TATATATAATAACAATAATAACTATAATAAAAATCTATTTAATAACAAATATTTATTTAACACTT
42900458 GGAC
261 GGAC
42900462 AAAACAAGTAGTATTTATCTCTAGGATTCCAAAAACTCAAAAATCATAAGAAAATGGGCTAAATT
1 AAAACAAGTAGTATTTATCTCTAGGATTCCAAAAACTCAAAAATCATAAGAAAATGGGCTAAATT
42900527 GACTTACCAAATTAACTTAGAACCTTTAAAACCTTATTTTTCCCTTTTTCTTTTTTTCCTTTCTC
66 GACTTACCAAATTAACTTAGAACCTTTAAAACCTTATTTTTCCCTTTTTCTTTTTTTCCTTTCTC
42900592 CCTTATCTGTTTCGTCCCCTGCTATTCTGTTTCTTTCCTCTTTTTATTCTTTTGTTTCTTTTATA
131 CCTTATCTGTTTCGTCCCCTGCTATTCTGTTTCTTTCCTCTTTTTATTCTTTTGTTTCTTTTATA
42900657 TATATATAATAACAATAATAACTATAATAAAAATCTATTTAATAACAAATATTTATTTAACACTT
196 TATATATAATAACAATAATAACTATAATAAAAATCTATTTAATAACAAATATTTATTTAACACTT
42900722 GGAC
261 GGAC
42900726 AA
1 AA
42900728 TCATTTTTAT
Statistics
Matches: 266, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
264 266 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (264 bp):
AAAACAAGTAGTATTTATCTCTAGGATTCCAAAAACTCAAAAATCATAAGAAAATGGGCTAAATT
GACTTACCAAATTAACTTAGAACCTTTAAAACCTTATTTTTCCCTTTTTCTTTTTTTCCTTTCTC
CCTTATCTGTTTCGTCCCCTGCTATTCTGTTTCTTTCCTCTTTTTATTCTTTTGTTTCTTTTATA
TATATATAATAACAATAATAACTATAATAAAAATCTATTTAATAACAAATATTTATTTAACACTT
GGAC
Found at i:42902948 original size:30 final size:30
Alignment explanation
Indices: 42902914--42902977 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
42902904 ATAATAAAAT
42902914 AATAATAAATATCTT-ATTAAAT-ATTAATAA
1 AATAAT-AATATCTTAATTAAATAATT-ATAA
* *
42902944 AATAATAATTTTTTAATTAAATAATTATAA
1 AATAATAATATCTTAATTAAATAATTATAA
42902974 AATA
1 AATA
42902978 TCATCAACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 6 0.20
30 21 0.70
31 3 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (30 bp):
AATAATAATATCTTAATTAAATAATTATAA
Found at i:42909717 original size:7 final size:7
Alignment explanation
Indices: 42909694--42909734 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
42909684 TATATATATA
42909694 TATTATAT
1 TATTA-AT
42909702 TATT-A-
1 TATTAAT
42909707 TATTAAT
1 TATTAAT
42909714 TATTAAT
1 TATTAAT
42909721 TATTAAT
1 TATTAAT
42909728 TAATTAA
1 T-ATTAA
42909735 AATATAAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
5 4 0.13
6 2 0.07
7 15 0.50
8 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
TATTAAT
Found at i:42910951 original size:10 final size:11
Alignment explanation
Indices: 42910919--42910952 Score: 54
Period size: 10 Copynumber: 3.3 Consensus size: 11
42910909 CTGGACAATT
42910919 AATTGATATTG
1 AATTGATATTG
42910930 -ATTGATATTG
1 AATTGATATTG
42910940 AATTGA-ATTG
1 AATTGATATTG
42910950 AAT
1 AAT
42910953 AGTTCTTTGC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 17 0.77
11 5 0.23
ACGTcount: A:0.38, C:0.00, G:0.18, T:0.44
Consensus pattern (11 bp):
AATTGATATTG
Found at i:42936225 original size:51 final size:51
Alignment explanation
Indices: 42936157--42936307 Score: 226
Period size: 51 Copynumber: 3.1 Consensus size: 51
42936147 ATCACATTTA
42936157 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
42936208 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCA----
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
* * *
42936255 T---TTGTCACTGATCAGATAAGTGTAGCTGAGGCTACCACTCATCACTTG
1 TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
42936303 TCACT
1 TCACT
42936308 GATCATAAGT
Statistics
Matches: 90, Mismatches: 3, Indels: 14
0.84 0.03 0.13
Matches are distributed among these distances:
44 40 0.44
47 1 0.01
48 1 0.01
51 48 0.53
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (51 bp):
TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTG
Found at i:42936250 original size:44 final size:44
Alignment explanation
Indices: 42936154--42936312 Score: 219
Period size: 44 Copynumber: 3.5 Consensus size: 44
42936144 CTGATCACAT
42936154 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
42936198 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 -T-T-A----TCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* * *
42936249 TTATCATTTGTCACTGATCAGATAAGTGTAGCTGAGGCTACCAC
1 TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
*
42936293 TCATCACTTGTCACTGATCA
1 TTATCACTTGTCACTGATCA
42936313 TAAGTACTCA
Statistics
Matches: 103, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
44 56 0.54
45 1 0.01
46 1 0.01
47 1 0.01
48 1 0.01
49 1 0.01
50 1 0.01
51 41 0.40
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.31
Consensus pattern (44 bp):
TTATCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:42938623 original size:29 final size:29
Alignment explanation
Indices: 42938581--42938638 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
42938571 AAGTGAGTGA
42938581 ATGTACCGTAAGGCCGGAGAGAGATAAGT
1 ATGTACCGTAAGGCCGGAGAGAGATAAGT
*
42938610 ATGTACCGTAAGGCCGGGGAGAGATAAGT
1 ATGTACCGTAAGGCCGGAGAGAGATAAGT
42938639 CTTCTTCTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.33, C:0.14, G:0.36, T:0.17
Consensus pattern (29 bp):
ATGTACCGTAAGGCCGGAGAGAGATAAGT
Found at i:42955279 original size:44 final size:43
Alignment explanation
Indices: 42955139--42955296 Score: 153
Period size: 44 Copynumber: 3.7 Consensus size: 43
42955129 AGCATATACA
* * * * *
42955139 ATGCCAACGTCCCAGACGTAGTCTTACATGT-AATCAAACATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAA-ATCG
* * * * *
42955182 ATGCTACTGTCCCAAATAGGGTCTTACAC--AAAATC-AAATACG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAA-CAAAAT-CG
42955224 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAAAGTCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAAA-TCG
*
42955268 ATGCCAATGTCCCAGACGTGGTCTTACAC
1 ATGCCAATGTCCCAGACATGGTCTTACAC
42955297 AATATCACAT
Statistics
Matches: 92, Mismatches: 16, Indels: 13
0.76 0.13 0.11
Matches are distributed among these distances:
41 2 0.02
42 30 0.33
43 22 0.24
44 37 0.40
45 1 0.01
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.23
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAAATCG
Found at i:42955296 original size:86 final size:85
Alignment explanation
Indices: 42955134--42955303 Score: 200
Period size: 86 Copynumber: 2.0 Consensus size: 85
42955124 CGGAAAGCAT
* * * * *
42955134 ATACAATGCCAACGTCCCAGACGTAGTCTTACATGTAATCAAACATCGATGCTACTGTCCCAAAT
1 ATACAATGCCAACGTCCCAGACATAGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAAAT
42955199 AGGGTCTTACACAAAATCAA
66 AGGGTCTTACACAAAATCAA
* * * *
42955219 ATACGATGCCAATGTCCCAGACATGGTCTTACACGTAAAACAAA-AGTCGATGCCAATGTCCCAG
1 ATACAATGCCAACGTCCCAGACATAGTCTTACACGT-AAACAAACA-TCGATGCCAATGTCCCAA
* *
42955283 A-CGTGGTCTTACACAATATCA
64 ATAG-GGTCTTACACAAAATCA
42955304 CATATCGGAA
Statistics
Matches: 71, Mismatches: 11, Indels: 5
0.82 0.13 0.06
Matches are distributed among these distances:
85 33 0.46
86 38 0.54
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (85 bp):
ATACAATGCCAACGTCCCAGACATAGTCTTACACGTAAACAAACATCGATGCCAATGTCCCAAAT
AGGGTCTTACACAAAATCAA
Found at i:42958338 original size:43 final size:43
Alignment explanation
Indices: 42958291--42958399 Score: 218
Period size: 43 Copynumber: 2.5 Consensus size: 43
42958281 TGTGATTATA
42958291 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTAAG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTAAG
42958334 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTAAG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTAAG
42958377 TGTAAGACCATGTCTGGGACATT
1 TGTAAGACCATGTCTGGGACATT
42958400 AACATCGTTA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 66 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTATTGAGATTAAG
Found at i:42967151 original size:5 final size:5
Alignment explanation
Indices: 42967141--42967169 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
42967131 TATAGTGAGA
42967141 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
42967170 AGAACACACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:42974765 original size:21 final size:22
Alignment explanation
Indices: 42974739--42974798 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 22
42974729 AAAATTAATT
42974739 AATATTTATATA-ATTAAAATA
1 AATATTTATATATATTAAAATA
42974760 AATA-TTATA-ATATT-AAATA
1 AATATTTATATATATTAAAATA
42974779 ATTATATTTAGTATATATTA
1 A--ATATTTA-TATATATTA
42974799 TATTATAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
19 7 0.22
20 8 0.25
21 7 0.22
22 3 0.09
23 2 0.06
24 5 0.16
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
AATATTTATATATATTAAAATA
Found at i:42975529 original size:21 final size:20
Alignment explanation
Indices: 42975505--42975548 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 20
42975495 TATAATAGCG
42975505 AAACGATAGCAAAACAATGAA
1 AAACGATAGCAAAACAAT-AA
*
42975526 AAAC-AGTGGCAAAACAATAA
1 AAACGA-TAGCAAAACAATAA
42975546 AAA
1 AAA
42975549 TGTAGCAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.64, C:0.14, G:0.14, T:0.09
Consensus pattern (20 bp):
AAACGATAGCAAAACAATAA
Found at i:42976448 original size:42 final size:42
Alignment explanation
Indices: 42976389--42976472 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
42976379 TGAATGGTTT
*
42976389 TTATAACGTCCCCAACCCGGTCTAGACGTTAGACCCGAATTC
1 TTATAACGTCCCCAACCCGGTCTAGACGTTAGACCCAAATTC
*
42976431 TTATAACGTCTCCAACCCGGTCTAGACGTTAGACCCAAATTC
1 TTATAACGTCCCCAACCCGGTCTAGACGTTAGACCCAAATTC
42976473 GAGATATTAC
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.25
Consensus pattern (42 bp):
TTATAACGTCCCCAACCCGGTCTAGACGTTAGACCCAAATTC
Found at i:42979353 original size:28 final size:29
Alignment explanation
Indices: 42979319--42979380 Score: 90
Period size: 28 Copynumber: 2.1 Consensus size: 29
42979309 ATTGGGATGG
* *
42979319 AAGGAGTAAAAGTTTT-GGGGAAAGTAGA
1 AAGGAGTAAAAGTTTTAGGGAAAAGTAAA
42979347 AAGGAGTAAAAGTTTTAAGGGAAAAGTAAA
1 AAGGAGTAAAAGTTTT-AGGGAAAAGTAAA
42979377 AAGG
1 AAGG
42979381 TTGGGGAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 16 0.53
30 14 0.47
ACGTcount: A:0.48, C:0.00, G:0.32, T:0.19
Consensus pattern (29 bp):
AAGGAGTAAAAGTTTTAGGGAAAAGTAAA
Found at i:42980523 original size:26 final size:26
Alignment explanation
Indices: 42980494--42980679 Score: 150
Period size: 26 Copynumber: 7.4 Consensus size: 26
42980484 AAACGAAACA
* * * *
42980494 AAATAATTTATAAAGCAATTTGAAGT
1 AAATAATATATAAAACAATTTAAAAT
* * *
42980520 AAAT-A-AGATAAAATAATTTGAAAT
1 AAATAATATATAAAACAATTTAAAAT
**
42980544 AAATAATACGTAAAACAATTTAAAAT
1 AAATAATATATAAAACAATTTAAAAT
* *
42980570 AAATAATATACAAAGCAATTTAAAAT
1 AAATAATATATAAAACAATTTAAAAT
** * *
42980596 AAATAATATATATGATACTTT---A-
1 AAATAATATATAAAACAATTTAAAAT
* * *
42980618 AAATAACATATAAAAGAGTTTAAAAT
1 AAATAATATATAAAACAATTTAAAAT
* *
42980644 AAATAATATGTAAAAAAATTTAAAAT
1 AAATAATATATAAAACAATTTAAAAT
42980670 AAATAATATA
1 AAATAATATA
42980680 CATAAATATA
Statistics
Matches: 125, Mismatches: 29, Indels: 12
0.75 0.17 0.07
Matches are distributed among these distances:
22 16 0.13
23 1 0.01
24 18 0.14
25 3 0.02
26 87 0.70
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.31
Consensus pattern (26 bp):
AAATAATATATAAAACAATTTAAAAT
Found at i:42980549 original size:50 final size:52
Alignment explanation
Indices: 42980494--42980681 Score: 165
Period size: 50 Copynumber: 3.7 Consensus size: 52
42980484 AAACGAAACA
* * * * * *
42980494 AAATAATTTATAAAGCAATTTGAAGTAAATAAGATA-AAA-TAATTTGAAAT
1 AAATAATATATAAAACAATTTAAAATAAATAAGATACAAAGCAATTTAAAAT
** *
42980544 AAATAATACGTAAAACAATTTAAAATAAATAATATACAAAGCAATTTAAAAT
1 AAATAATATATAAAACAATTTAAAATAAATAAGATACAAAGCAATTTAAAAT
** * * *
42980596 AAATAATATATATGATACTTTAAAATAACAT---ATA-AAAG-AGTTTAAAAT
1 AAATAATATATAAAACAATTTAAAATAA-ATAAGATACAAAGCAATTTAAAAT
* * *
42980644 AAATAATATGTAAAAAAATTTAAAATAAATAATATACA
1 AAATAATATATAAAACAATTTAAAATAAATAAGATACA
42980682 TAAATATATA
Statistics
Matches: 110, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
47 2 0.02
48 32 0.29
49 4 0.04
50 35 0.32
51 4 0.04
52 31 0.28
53 2 0.02
ACGTcount: A:0.60, C:0.04, G:0.06, T:0.30
Consensus pattern (52 bp):
AAATAATATATAAAACAATTTAAAATAAATAAGATACAAAGCAATTTAAAAT
Found at i:42980666 original size:48 final size:51
Alignment explanation
Indices: 42980534--42980681 Score: 167
Period size: 48 Copynumber: 2.9 Consensus size: 51
42980524 AAGATAAAAT
* * *
42980534 AATTTGAAATAAATAATACGTAAAACAATTTAAAATAAATAATATACAAAGC
1 AATTTAAAATAAATAATATGTAAAAAAATTTAAAAT-AATAATATACAAAGC
* ** * * *
42980586 AATTTAAAATAAATAATATATATGATACTTTAAAATAA-CATATA-AAAG-
1 AATTTAAAATAAATAATATGTAAAAAAATTTAAAATAATAATATACAAAGC
*
42980634 AGTTTAAAATAAATAATATGTAAAAAAATTTAAAATAAATAATATACA
1 AATTTAAAATAAATAATATGTAAAAAAATTTAAAAT-AATAATATACA
42980682 TAAATATATA
Statistics
Matches: 78, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
48 30 0.38
49 6 0.08
50 10 0.13
51 3 0.04
52 29 0.37
ACGTcount: A:0.60, C:0.05, G:0.05, T:0.30
Consensus pattern (51 bp):
AATTTAAAATAAATAATATGTAAAAAAATTTAAAATAATAATATACAAAGC
Done.