Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 147 of 182
Found at i:45087202 original size:171 final size:171
Alignment explanation
Indices: 45086908--45087224 Score: 402
Period size: 171 Copynumber: 1.9 Consensus size: 171
45086898 AAAGGTCCTA
* * * * ** * *
45086908 ATCTATAGCGGCGTTTTTAAAAAATGCGCCTCTAAAGGTCTTGATCTATAGCGACATTTTTAAAA
1 ATCTATAGCGGCGTTTGTAAAAAAAGCGACGCTAAAGACCCTGATCTATAGCGACATTTGTAAAA
** * *
45086973 AAAGCGCCGCTAAAGGTCCTGATCTATAGCGTCGTTTGTAAAAGAAGCACTACTAAAGACCCTGA
66 AAAGCGCCGCTAAAGACCCTGATCTATAGCGGCGTTTGTAAAAGAAGCACCACTAAAGACCCTGA
*
45087038 TCTATAGCGGCATTTGTAAAAAAGCGTCGCTAAAGACCTTG
131 TCTATAACGGCATTTGTAAAAAAGCGTCGCTAAAGACCTTG
* * * *
45087079 ATCTATAGCGGTGTTTGTAAAAAAAGCGACGCTAAAGACCCTGATCTATAGCGGCGTTTGTAGAA
1 ATCTATAGCGGCGTTTGTAAAAAAAGCGACGCTAAAGACCCTGATCTATAGCGACATTTGTAAAA
* ** * *
45087144 AAAGCGCCGCTAAAGACCCTGCTCTATAGCGGCGTTTGT-GGAGAAAGCGCCGCTAAAGACCCTG
66 AAAGCGCCGCTAAAGACCCTGATCTATAGCGGCGTTTGTAAAAG-AAGCACCACTAAAGACCCTG
* *
45087208 CTCTATAACGGCGTTTG
130 ATCTATAACGGCATTTG
45087225 CGACGTTGAC
Statistics
Matches: 121, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
170 2 0.02
171 119 0.98
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.26
Consensus pattern (171 bp):
ATCTATAGCGGCGTTTGTAAAAAAAGCGACGCTAAAGACCCTGATCTATAGCGACATTTGTAAAA
AAAGCGCCGCTAAAGACCCTGATCTATAGCGGCGTTTGTAAAAGAAGCACCACTAAAGACCCTGA
TCTATAACGGCATTTGTAAAAAAGCGTCGCTAAAGACCTTG
Found at i:45092147 original size:25 final size:25
Alignment explanation
Indices: 45092119--45092167 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
45092109 AAGATGATTG
45092119 TATATAAAATT-TTAATAAATAAAAA
1 TATATAAAATTATTAA-AAATAAAAA
*
45092144 TATATAAAATTATTAAATATAAAA
1 TATATAAAATTATTAAAAATAAAA
45092168 TTAAAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 18 0.82
26 4 0.18
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (25 bp):
TATATAAAATTATTAAAAATAAAAA
Found at i:45092179 original size:17 final size:17
Alignment explanation
Indices: 45092138--45092183 Score: 53
Period size: 15 Copynumber: 2.9 Consensus size: 17
45092128 TTTTAATAAA
45092138 TAAAAAT-ATATAAAAT
1 TAAAAATAATATAAAAT
**
45092154 T-ATTA-AATATAAAAT
1 TAAAAATAATATAAAAT
45092169 TAAAAATAATATAAA
1 TAAAAATAATATAAA
45092184 CATATATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 5
0.72 0.12 0.16
Matches are distributed among these distances:
15 12 0.52
16 3 0.13
17 8 0.35
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (17 bp):
TAAAAATAATATAAAAT
Found at i:45092183 original size:23 final size:24
Alignment explanation
Indices: 45092119--45092183 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 24
45092109 AAGATGATTG
**
45092119 TATATAAAATTTTAATAAATAAAAA
1 TATATAAAATAAT-ATAAATAAAAA
*
45092144 TATATAAAATTAT-TAAATATAAAA
1 TATATAAAATAATATAAATA-AAAA
45092168 T-TA-AAAATAATATAAA
1 TATATAAAATAATATAAA
45092184 CATATATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
22 7 0.19
23 12 0.33
24 5 0.14
25 12 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (24 bp):
TATATAAAATAATATAAATAAAAA
Found at i:45092933 original size:27 final size:26
Alignment explanation
Indices: 45092903--45092960 Score: 98
Period size: 27 Copynumber: 2.2 Consensus size: 26
45092893 GCCTGATCAG
*
45092903 GCCAATGCCATTGGCGGCACCAATGGT
1 GCCAATGCCATTGGCGACACCAAT-GT
45092930 GCCAATGCCATTGGCGACACCAATGT
1 GCCAATGCCATTGGCGACACCAATGT
45092956 GCCAA
1 GCCAA
45092961 AGGACTAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 7 0.23
27 23 0.77
ACGTcount: A:0.26, C:0.31, G:0.26, T:0.17
Consensus pattern (26 bp):
GCCAATGCCATTGGCGACACCAATGT
Found at i:45093511 original size:19 final size:19
Alignment explanation
Indices: 45093451--45093511 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 19
45093441 CTGGTATTTC
* *
45093451 TATTAATTTAAAATATAGT
1 TATTAAATTAAAATAGAGT
* * *
45093470 TATTAAATGAGAATAG-TT
1 TATTAAATTAAAATAGAGT
*
45093488 TATTAAATTAAAACAGAGT
1 TATTAAATTAAAATAGAGT
45093507 TATTA
1 TATTA
45093512 CTTAATTAGA
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
18 14 0.44
19 18 0.56
ACGTcount: A:0.48, C:0.02, G:0.10, T:0.41
Consensus pattern (19 bp):
TATTAAATTAAAATAGAGT
Found at i:45094050 original size:27 final size:26
Alignment explanation
Indices: 45094011--45094068 Score: 89
Period size: 27 Copynumber: 2.2 Consensus size: 26
45094001 TTTTAGTCCT
* *
45094011 TTGGCACATTGGTGCCGCCAATGGCA
1 TTGGCACATTGGTGCCACCAACGGCA
45094037 TTGGCACCATTGGTGCCACCAACGGCA
1 TTGGCA-CATTGGTGCCACCAACGGCA
45094064 TTGGC
1 TTGGC
45094069 CTAATCTGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 6 0.21
27 23 0.79
ACGTcount: A:0.19, C:0.29, G:0.29, T:0.22
Consensus pattern (26 bp):
TTGGCACATTGGTGCCACCAACGGCA
Found at i:45119074 original size:32 final size:32
Alignment explanation
Indices: 45119037--45119203 Score: 105
Period size: 32 Copynumber: 5.4 Consensus size: 32
45119027 GTGGCGGAAC
*
45119037 CTGTTATATGTGAAAGCCTTTGTGGTTGTTCT
1 CTGTTATATGTGAAAGCCTTAGTGGTTGTTCT
* * *
45119069 CTGTTATATGTG--AGCCCTAGTGGTGGAAT-T
1 CTGTTATATGTGAAAGCCTTAGTGGTTG-TTCT
* * * *
45119099 -TGTTATATGAGGAAGCCTTCGTGGTTGTTTT
1 CTGTTATATGTGAAAGCCTTAGTGGTTGTTCT
* * * ** **
45119130 CTGTTTTATGT-AAA-CCCTAGAGGCAG-AAT
1 CTGTTATATGTGAAAGCCTTAGTGGTTGTTCT
** *
45119159 CTGTTATATGCCAAAGCCTTTGTGGTTGTTCT
1 CTGTTATATGTGAAAGCCTTAGTGGTTGTTCT
*
45119191 CTGTTTTATGTGA
1 CTGTTATATGTGA
45119204 GCCCTAGTGG
Statistics
Matches: 96, Mismatches: 31, Indels: 16
0.67 0.22 0.11
Matches are distributed among these distances:
29 20 0.21
30 23 0.24
31 22 0.23
32 31 0.32
ACGTcount: A:0.19, C:0.14, G:0.25, T:0.42
Consensus pattern (32 bp):
CTGTTATATGTGAAAGCCTTAGTGGTTGTTCT
Found at i:45119088 original size:61 final size:61
Alignment explanation
Indices: 45118993--45119240 Score: 307
Period size: 61 Copynumber: 4.1 Consensus size: 61
45118983 AAAGTGATGA
* * * *
45118993 CTTTGTGGTTGTTCTCTGTTATGTGTGAGTCCTAGTGGCGGAACCTGTTATATGTGAAAGC
1 CTTTGTGGTTGTTCTCTGTTATATGTGAGCCCTAGTGGCAGAATCTGTTATATGTGAAAGC
** * * *
45119054 CTTTGTGGTTGTTCTCTGTTATATGTGAGCCCTAGTGGTGGAATTTGTTATATGAGGAAGC
1 CTTTGTGGTTGTTCTCTGTTATATGTGAGCCCTAGTGGCAGAATCTGTTATATGTGAAAGC
* * * * * * **
45119115 CTTCGTGGTTGTTTTCTGTTTTATGTAAACCCTAGAGGCAGAATCTGTTATATGCCAAAGC
1 CTTTGTGGTTGTTCTCTGTTATATGTGAGCCCTAGTGGCAGAATCTGTTATATGTGAAAGC
* * * *
45119176 CTTTGTGGTTGTTCTCTGTTTTATGTGAGCCCTAGTGGCAGAATCTATTATATATGGAAGC
1 CTTTGTGGTTGTTCTCTGTTATATGTGAGCCCTAGTGGCAGAATCTGTTATATGTGAAAGC
45119237 CTTT
1 CTTT
45119241 ATGGCAAAAT
Statistics
Matches: 158, Mismatches: 29, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 158 1.00
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40
Consensus pattern (61 bp):
CTTTGTGGTTGTTCTCTGTTATATGTGAGCCCTAGTGGCAGAATCTGTTATATGTGAAAGC
Found at i:45119399 original size:30 final size:30
Alignment explanation
Indices: 45119358--45119431 Score: 114
Period size: 30 Copynumber: 2.5 Consensus size: 30
45119348 CTGGACATCC
*
45119358 TTGTGGTTATCTAATGATATGC-AGACGCCT
1 TTGTGGCTATCTAATGATATGCGA-ACGCCT
*
45119388 TTGTGGCTATCTAATGATATGCGAACTCCT
1 TTGTGGCTATCTAATGATATGCGAACGCCT
45119418 TTGTGGCTATCTAA
1 TTGTGGCTATCTAA
45119432 GTCAAGTGGA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
30 40 0.98
31 1 0.02
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.38
Consensus pattern (30 bp):
TTGTGGCTATCTAATGATATGCGAACGCCT
Found at i:45126459 original size:496 final size:491
Alignment explanation
Indices: 45125231--45126487 Score: 1279
Period size: 496 Copynumber: 2.5 Consensus size: 491
45125221 TCTAGTTAGT
45125231 GGAATGCATAATTGATAAATACTCTTAAATTATTCAAATATTTGAAATTAAACATAGGTGGTCCA
1 GGAATGCATAATTGATAAATACTCTTAAATTA-TCAAATATTTGAAATTAAACATA-GTGGTCCA
* * *
45125296 AAA-TTTGATATATTTCACTATATGATATTAAGTTCTAAAGATGTATACCCAATGTTGTGTTTAC
64 AAATTTTG--ATATTTC-CTATATGATATTAAATTC-AAACATGTATACTCAATGTTGTGTTTAC
* * * * ** *
45125360 ATGGATCGATTCAATTGGATCAAT-GAT-TATAATCGATTATACAATTTATTCAATTGGATCAAT
125 ATGGATTGATTCAATTGAATCAATGGTTGTACAATTAATTATACAATTTATTCAATTGGATCATT
* * * ** *
45125423 GATTGTACAATTAATGACA--ATTTGTTCGATTACACTAGA-AGTTAGAGGAATATACAATTGAT
190 G-TTGTATAATTAATGTCATGA-TTATTCG-TTTTACTA-ATAATTAGAGGAATATACAATTGAT
* * * * *
45125485 CAATACTTTTAAAAATACTTATAGAATACAATGTTATTACCTTCATATATAGATTCATTCAATTA
251 CAATACTTTTAAAAATACTTACACAATACAATGTCATCACCTTCATACATAGATTCATTCAATTA
* * * * **
45125550 GATGAATTATTCTACAAGTAATGTCATAAGTCATTCAAATACATTAGAAATTAGAAAAATGTAAA
316 GATGAATGAGTCTACAAGTAATATAATAACCCATTCAAATACATTAGAAATTAGAAAAATGTAAA
* * * * ** * *
45125615 AGTGGTCATTACTTTTCACATTACTTGTACACCACATTGTTAGTATGTTCGAATATAGACTCAAT
381 AGTGATCAATACTTTTCAAATTACTTGTACACCACAATGTTAGTACATTCCAATATAAACTCAAT
* *
45125680 TCAATTGGTTTAATGCCATAATCATTCAATTAAATTAGTAGTGAAA
446 TCAATTGGTTCAATGCCATAATCAATCAATTAAATTAGTAGTGAAA
* *
45125726 GGAATGCATAATTGATAAATGCTCTTAAATTAATCAAATATTTGAAATTAAACATAACTGGTCC-
1 GGAATGCATAATTGATAAATACTCTTAAATT-ATCAAATATTTGAAATTAAACAT-AGTGGTCCA
* * * * * *
45125790 AAATTTTCA-A-TT--TAT-T-ATGTTAAATTCAAACATGTATACTAAATGTTATGTTTTCACGG
64 AAATTTTGATATTTCCTATATGATATTAAATTCAAACATGTATACTCAATGTTGTGTTTACATGG
* * * * * *
45125849 AATAATTCAATTGAATAAATGATTGTACGATTAATTATACAATTTATTCAATTGGATCATTGGAT
129 ATTGATTCAATTGAATCAATGGTTGTACAATTAATTATACAATTTATTCAATTGGATCATT-GTT
** * * * *
45125914 GTATGGTTAATGTCATGATTAATTGGATTTTCCTAGTAATTAGAGGAATATACAATTGATAAATA
193 GTATAATTAATGTCATGATT-ATTCG-TTTTACTAATAATTAGAGGAATATACAATTGATCAATA
* * * * * * *
45125979 CTTTTAGACATACTTACACACTATAATGTCATCACCTTCGTACATAGATTTATTCAATTAGATTA
256 CTTTTAAAAATACTTACACAATACAATGTCATCACCTTCATACATAGATTCATTCAATTAGATGA
* * ** ** * * *
45126044 ATGAGTGTACAATTAATATAATAACCCATTCAGTTATGTTAG-TATTAGAGAAATGTAAAATTGA
321 ATGAGTCTACAAGTAATATAATAACCCATTCAAATACATTAGAAATTAGAAAAATGTAAAAGTGA
* * *
45126108 TCAAT-GTTATTCAAATTACTTGTACACCACAATGTTAGTACATTCCTATATAAA-TCTGATTCA
386 TCAATACTT-TTCAAATTACTTGTACACCACAATGTTAGTACATTCCAATATAAACTC-AATTCA
* * * ** * *
45126171 ATTGGTTCAATGCTATAA-GAATCATTTATGTTTGTAGTTAAA
449 ATTGGTTCAATGCCATAATCAATCAATTAAATTAGTAGTGAAA
* * * *
45126213 GGAATGTATAATTGATAAATAATCTTAAATTGATCAAATATTTAAAATTAAACATCAGTAGTCCA
1 GGAATGCATAATTGATAAATACTCTTAAATT-ATCAAATATTTGAAATTAAACAT-AGTGGTCCA
* *
45126278 AAATTTTGATATTTCGCTATATGATATTGAATTTCAAACATGTATACTCAATATTGTGTTTACAT
64 AAATTTTGATATTTC-CTATATGATATT-AAATTCAAACATGTATACTCAATGTTGTGTTTACAT
* * * * *
45126343 AGATTGATTCAATTGAATCAATGGTTGTACAATTAATTATACAATTTGTTTAGTTGGATCTTTAG
127 GGATTGATTCAATTGAATCAATGGTTGTACAATTAATTATACAATTTATTCAATTGGATCATT-G
* * * * * *
45126408 TTATATTATTTATGTCATTGATTATTCGTTTGTGCTAATAATTAAAGGAATATACAATTGGTCAA
191 TTGTATAATTAATGTCA-TGATTATTCGTTT-TACTAATAATTAGAGGAATATACAATTGATCAA
45126473 TACTTTTAAAAATAC
254 TACTTTTAAAAATAC
45126488 ATATACATTA
Statistics
Matches: 616, Mismatches: 123, Indels: 45
0.79 0.16 0.06
Matches are distributed among these distances:
485 41 0.07
486 10 0.02
487 121 0.20
488 95 0.15
489 120 0.19
490 2 0.00
491 2 0.00
492 1 0.00
493 4 0.01
494 4 0.01
495 68 0.11
496 143 0.23
497 5 0.01
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (491 bp):
GGAATGCATAATTGATAAATACTCTTAAATTATCAAATATTTGAAATTAAACATAGTGGTCCAAA
ATTTTGATATTTCCTATATGATATTAAATTCAAACATGTATACTCAATGTTGTGTTTACATGGAT
TGATTCAATTGAATCAATGGTTGTACAATTAATTATACAATTTATTCAATTGGATCATTGTTGTA
TAATTAATGTCATGATTATTCGTTTTACTAATAATTAGAGGAATATACAATTGATCAATACTTTT
AAAAATACTTACACAATACAATGTCATCACCTTCATACATAGATTCATTCAATTAGATGAATGAG
TCTACAAGTAATATAATAACCCATTCAAATACATTAGAAATTAGAAAAATGTAAAAGTGATCAAT
ACTTTTCAAATTACTTGTACACCACAATGTTAGTACATTCCAATATAAACTCAATTCAATTGGTT
CAATGCCATAATCAATCAATTAAATTAGTAGTGAAA
Found at i:45127064 original size:19 final size:18
Alignment explanation
Indices: 45127040--45127098 Score: 68
Period size: 17 Copynumber: 3.2 Consensus size: 18
45127030 ACTCCCCTTA
45127040 TTTATTTTCCCTCAAAACT
1 TTTATTTTCCC-CAAAACT
45127059 TTTA--TTCCCCAAAACTT
1 TTTATTTTCCCCAAAAC-T
*
45127076 TTTATTTTTCCCCTAAACT
1 TTTA-TTTTCCCCAAAACT
45127095 TTTA
1 TTTA
45127099 CTTCTCACCC
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
16 6 0.17
17 10 0.29
19 9 0.26
20 10 0.29
ACGTcount: A:0.25, C:0.25, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTATTTTCCCCAAAACT
Found at i:45127081 original size:17 final size:17
Alignment explanation
Indices: 45127046--45127077 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
45127036 CTTATTTATT
45127046 TTCCCTCAAAACTTTTA
1 TTCCCTCAAAACTTTTA
45127063 TTCCC-CAAAACTTTT
1 TTCCCTCAAAACTTTT
45127078 TATTTTTCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (17 bp):
TTCCCTCAAAACTTTTA
Found at i:45127088 original size:20 final size:19
Alignment explanation
Indices: 45127040--45127097 Score: 68
Period size: 20 Copynumber: 3.1 Consensus size: 19
45127030 ACTCCCCTTA
45127040 TTTATTTTCCCTCAAAAC-T
1 TTTATTTTCCC-CAAAACTT
45127059 TTTA--TTCCCCAAAACTT
1 TTTATTTTCCCCAAAACTT
*
45127076 TTTATTTTTCCCCTAAACTT
1 TTTA-TTTTCCCCAAAACTT
45127096 TT
1 TT
45127098 ACTTCTCACC
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
16 6 0.18
17 10 0.29
19 4 0.12
20 14 0.41
ACGTcount: A:0.24, C:0.26, G:0.00, T:0.50
Consensus pattern (19 bp):
TTTATTTTCCCCAAAACTT
Found at i:45132309 original size:18 final size:18
Alignment explanation
Indices: 45132254--45132311 Score: 55
Period size: 18 Copynumber: 3.2 Consensus size: 18
45132244 TTCCACTCTT
* **
45132254 TTTAAAAAATGACCCCTC
1 TTTAAAAAATTACAACTC
*
45132272 TTCAAAAAA-TACCAATCTC
1 TTTAAAAAATTA-CAA-CTC
45132291 TTTAAAAAATTACAACTC
1 TTTAAAAAATTACAACTC
45132309 TTT
1 TTT
45132312 TAACAATATT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
17 1 0.03
18 15 0.47
19 14 0.44
20 2 0.06
ACGTcount: A:0.43, C:0.22, G:0.02, T:0.33
Consensus pattern (18 bp):
TTTAAAAAATTACAACTC
Found at i:45132313 original size:19 final size:19
Alignment explanation
Indices: 45132248--45132314 Score: 50
Period size: 19 Copynumber: 3.5 Consensus size: 19
45132238 AAAACCTTCC
* *
45132248 ACTCTTTTTAAAAAATGACC
1 ACTC-TTTTAAAAAATTACA
* *
45132268 CCTC-TTCAAAAAA-TACCA
1 ACTCTTTTAAAAAATTA-CA
45132286 A-TCTCTTTAAAAAATTACA
1 ACTCT-TTTAAAAAATTACA
45132305 ACTCTTTTAA
1 ACTCTTTTAA
45132315 CAATATTACT
Statistics
Matches: 36, Mismatches: 6, Indels: 11
0.68 0.11 0.21
Matches are distributed among these distances:
17 3 0.08
18 9 0.25
19 16 0.44
20 8 0.22
ACGTcount: A:0.42, C:0.22, G:0.01, T:0.34
Consensus pattern (19 bp):
ACTCTTTTAAAAAATTACA
Found at i:45142885 original size:48 final size:48
Alignment explanation
Indices: 45142814--45142911 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
45142804 CACTCTCACA
*
45142814 AATAACGTTCCTCAACGAACTTATAAGTGCTTTCAATATTTAATACTT
1 AATAACGTTCCTCAACGAACTTATAAGTGCTTTCAATATTCAATACTT
45142862 AATAACGTTCCTCAACGAACTTATAAGTGCTTTCAATATTCAATACTT
1 AATAACGTTCCTCAACGAACTTATAAGTGCTTTCAATATTCAATACTT
45142910 AA
1 AA
45142912 ACCTATACAA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.37, C:0.19, G:0.08, T:0.36
Consensus pattern (48 bp):
AATAACGTTCCTCAACGAACTTATAAGTGCTTTCAATATTCAATACTT
Found at i:45144069 original size:148 final size:147
Alignment explanation
Indices: 45143859--45144176 Score: 473
Period size: 148 Copynumber: 2.1 Consensus size: 147
45143849 TTTTTTTAAA
45143859 AAAAGGGAGAAAGTTTAGATTTTGAAGAAATAAAAATATATATTTTTTAGTTATTTTAAAGGAAA
1 AAAA-GGAGAAAGTTTAGATTTTGAAGAAATAAAAATATATATTTTTTAGTTATTTTAAAGGAAA
* *
45143924 GTTAAAAATTTTAAAACAAAGTTTTGATTTTTTTTCAACTATCTCAAAGTAAAAGCTTTAATCTT
65 ATTAAAAATTTTAAAACAAAGTTTTGATTTTTTTT-AACTA---CAAA-TAAAAGCTTTAATATT
45143989 TAAGAAAAACAATG-TTTTTTTT
125 TAAGAAAAACAATGTTTTTTTTT
*
45144011 -AAAGGAGAAAGTTTAGATTTTGAA-AAATAAAAATCTAT-TTTTTTAGTTATTTTAAAGGAAAA
1 AAAAGGAGAAAGTTTAGATTTTGAAGAAATAAAAATATATATTTTTTAGTTATTTTAAAGGAAAA
* *
45144073 TTTAAATTTTTAAAACAAAGTTTTGATTTTTTTTAACTACAAATAAAAGCTTTAATATTTAAGAA
66 TTAAAAATTTTAAAACAAAGTTTTGATTTTTTTTAACTACAAATAAAAGCTTTAATATTTAAGAA
*
45144138 AAATAATGTTTTTTTTTTT
131 AAACAATG--TTTTTTTTT
*
45144157 AAAATGAGAAAGTTTAGATT
1 AAAAGGAGAAAGTTTAGATT
45144177 CTCTCCAGTG
Statistics
Matches: 155, Mismatches: 7, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
143 28 0.18
144 4 0.03
146 8 0.05
147 23 0.15
148 55 0.35
149 13 0.08
150 21 0.14
151 3 0.02
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.42
Consensus pattern (147 bp):
AAAAGGAGAAAGTTTAGATTTTGAAGAAATAAAAATATATATTTTTTAGTTATTTTAAAGGAAAA
TTAAAAATTTTAAAACAAAGTTTTGATTTTTTTTAACTACAAATAAAAGCTTTAATATTTAAGAA
AAACAATGTTTTTTTTT
Found at i:45145446 original size:3 final size:3
Alignment explanation
Indices: 45145435--45145474 Score: 71
Period size: 3 Copynumber: 13.3 Consensus size: 3
45145425 ATATTTTATT
*
45145435 ATA AAA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
45145475 AAGATTGAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:45151002 original size:25 final size:24
Alignment explanation
Indices: 45150974--45151029 Score: 58
Period size: 25 Copynumber: 2.2 Consensus size: 24
45150964 AATAAAAATA
**
45150974 AAATAAAGCCTAATAAATAATAACT
1 AAATAAAGAATAA-AAATAATAACT
* *
45150999 AAATATAATAATAAAAATAATAATT
1 AAATA-AAGAATAAAAATAATAACT
45151024 AAATAA
1 AAATAA
45151030 TTAAATATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 1 0.04
25 20 0.77
26 5 0.19
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (24 bp):
AAATAAAGAATAAAAATAATAACT
Found at i:45151052 original size:13 final size:13
Alignment explanation
Indices: 45150985--45151056 Score: 65
Period size: 13 Copynumber: 5.0 Consensus size: 13
45150975 AATAAAGCCT
45150985 AATAAATAATAACTA
1 AATAAATAATAA--A
45151000 AATATAATAATAAA
1 AATA-AATAATAAA
45151014 AAT-AATAATTAAA
1 AATAAATAA-TAAA
45151027 TAATTAAATATAATAAA
1 -AA-T-AA-ATAATAAA
45151044 AATAAATAATAAA
1 AATAAATAATAAA
45151057 TAAGAAAAAG
Statistics
Matches: 50, Mismatches: 0, Indels: 16
0.76 0.00 0.24
Matches are distributed among these distances:
12 5 0.10
13 12 0.24
14 8 0.16
15 6 0.12
16 10 0.20
17 5 0.10
18 4 0.08
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.29
Consensus pattern (13 bp):
AATAAATAATAAA
Found at i:45151065 original size:20 final size:21
Alignment explanation
Indices: 45150984--45151059 Score: 84
Period size: 23 Copynumber: 3.5 Consensus size: 21
45150974 AAATAAAGCC
45150984 TAATAAATAATAACTAAATATAA
1 TAATAAATAATAA-TAAATA-AA
*
45151007 TAATAAA-AATAATAATTAAA
1 TAATAAATAATAATAAATAAA
45151027 TAATTAAAT-ATAATAAAAATAAA
1 TAA-TAAATAATAAT--AAATAAA
45151050 TAATAAATAA
1 TAATAAATAA
45151060 GAAAAAGAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 10
0.79 0.03 0.17
Matches are distributed among these distances:
20 5 0.11
21 14 0.30
22 10 0.22
23 17 0.37
ACGTcount: A:0.68, C:0.01, G:0.00, T:0.30
Consensus pattern (21 bp):
TAATAAATAATAATAAATAAA
Found at i:45154889 original size:196 final size:196
Alignment explanation
Indices: 45154555--45154946 Score: 757
Period size: 196 Copynumber: 2.0 Consensus size: 196
45154545 TTAGGCGAAC
*
45154555 CTAAACCAAAATTAAATATAAATACAATAAATTTACCATTAAACCATCCCCCAAACACCCACTTA
1 CTAAACCAAAATTAAATATAAATACAATAAATTTACCATTAAACCAGCCCCCAAACACCCACTTA
*
45154620 TGAGTTCAAACCAATCGTTGGAATTATAACTATTTTACAAATCCAAACTAGTTAGATTCTTTACA
66 TGAGTTCAAACCAATCGTTAGAATTATAACTATTTTACAAATCCAAACTAGTTAGATTCTTTACA
45154685 CTGTATCGATACAAACCGTACGTATAATCGTTCTTCGCCTTTACGGATGATTTGGGGTGTTTGGG
131 CTGTATCGATACAAACCGTACGTATAATCGTTCTTCGCCTTTACGGATGATTTGGGGTGTTTGGG
45154750 T
196 T
45154751 CTAAACCAAAATTAAATATAAATACAATAAATTTACCATTAAACCAGCCCCCAAACACCCACTTA
1 CTAAACCAAAATTAAATATAAATACAATAAATTTACCATTAAACCAGCCCCCAAACACCCACTTA
45154816 TGAGTTCAAACCAATCGTTAGAATTATAACTATTTTACAAATCCAAACTAGTTAGATTCTTTACA
66 TGAGTTCAAACCAATCGTTAGAATTATAACTATTTTACAAATCCAAACTAGTTAGATTCTTTACA
*
45154881 CTGTATCGATGCAAACCGTACGTATAATCGTTCTTCGCCTTTACGGATGATTTGGGGTGTTTGGG
131 CTGTATCGATACAAACCGTACGTATAATCGTTCTTCGCCTTTACGGATGATTTGGGGTGTTTGGG
45154946 T
196 T
45154947 TAGCACCTAA
Statistics
Matches: 193, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
196 193 1.00
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.31
Consensus pattern (196 bp):
CTAAACCAAAATTAAATATAAATACAATAAATTTACCATTAAACCAGCCCCCAAACACCCACTTA
TGAGTTCAAACCAATCGTTAGAATTATAACTATTTTACAAATCCAAACTAGTTAGATTCTTTACA
CTGTATCGATACAAACCGTACGTATAATCGTTCTTCGCCTTTACGGATGATTTGGGGTGTTTGGG
T
Found at i:45168305 original size:28 final size:27
Alignment explanation
Indices: 45168274--45168358 Score: 66
Period size: 28 Copynumber: 3.0 Consensus size: 27
45168264 TAGATATTTT
45168274 ATTTCTTTCAAATATTTTAACATCTTTA
1 ATTT-TTTCAAATATTTTAACATCTTTA
** * *
45168302 ATTTATTTCAGCTTTTTTCAACATCGTTA
1 ATTT-TTTCAAATATTTT-AACATCTTTA
*
45168331 ATTTATTCAAATTTATTTTAA-AT-TTTA
1 ATTTTTTCAAA--TATTTTAACATCTTTA
45168358 A
1 A
45168359 ATTTATATAT
Statistics
Matches: 44, Mismatches: 10, Indels: 7
0.72 0.16 0.11
Matches are distributed among these distances:
27 4 0.09
28 20 0.45
29 15 0.34
30 5 0.11
ACGTcount: A:0.32, C:0.12, G:0.02, T:0.54
Consensus pattern (27 bp):
ATTTTTTCAAATATTTTAACATCTTTA
Found at i:45181333 original size:24 final size:24
Alignment explanation
Indices: 45181286--45181333 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
45181276 TCGTTCTATG
* ** *
45181286 GCAAAGGATGACTTGATGGTAAAT
1 GCAAAGGATGAATTGACAGAAAAT
45181310 GCAAAGGATGAATTGACAGAAAAT
1 GCAAAGGATGAATTGACAGAAAAT
45181334 TACCCAAGTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.44, C:0.08, G:0.27, T:0.21
Consensus pattern (24 bp):
GCAAAGGATGAATTGACAGAAAAT
Found at i:45181495 original size:42 final size:42
Alignment explanation
Indices: 45181430--45181532 Score: 134
Period size: 42 Copynumber: 2.5 Consensus size: 42
45181420 TGAGTTTCTA
* * * **
45181430 TTCAACCCTAATGGGTTTTCGTTCAGCTCTTTTGAGCTTCAG
1 TTCAACCCTTATGGGTTTCCGTTCAGCTCCTACGAGCTTCAG
* *
45181472 TTTAACCCTTATGGGTTTCCGTTCAGCTCCTACGAGCTTCCG
1 TTCAACCCTTATGGGTTTCCGTTCAGCTCCTACGAGCTTCAG
*
45181514 TTCAACCCCTATGGGTTTC
1 TTCAACCCTTATGGGTTTC
45181533 TGTTTAGCAC
Statistics
Matches: 52, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 52 1.00
ACGTcount: A:0.16, C:0.28, G:0.18, T:0.38
Consensus pattern (42 bp):
TTCAACCCTTATGGGTTTCCGTTCAGCTCCTACGAGCTTCAG
Found at i:45187060 original size:42 final size:42
Alignment explanation
Indices: 45186994--45187097 Score: 118
Period size: 42 Copynumber: 2.5 Consensus size: 42
45186984 ATGAGTTTCT
* * * * * **
45186994 GTTCAACCCTAATGGATTTCCGTTCAGCTCTTTTGAGCTTCA
1 GTTCAACCCTTATGGGTTTTCGTTCAACTCCTACGAGCTTCA
* *
45187036 GTTTAACCCTTATGGGTTTTCGTTCAACTCCTACGAGCTTCC
1 GTTCAACCCTTATGGGTTTTCGTTCAACTCCTACGAGCTTCA
*
45187078 GTTCAACCATTATGGGTTTT
1 GTTCAACCCTTATGGGTTTT
45187098 TGTTTAGCAC
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.18, C:0.25, G:0.17, T:0.39
Consensus pattern (42 bp):
GTTCAACCCTTATGGGTTTTCGTTCAACTCCTACGAGCTTCA
Found at i:45189214 original size:15 final size:15
Alignment explanation
Indices: 45189194--45189223 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
45189184 CAAGTTGGAC
45189194 ACGATTGATATATAT
1 ACGATTGATATATAT
45189209 ACGATTGATATATAT
1 ACGATTGATATATAT
45189224 GCACCAACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.07, G:0.13, T:0.40
Consensus pattern (15 bp):
ACGATTGATATATAT
Found at i:45199314 original size:23 final size:23
Alignment explanation
Indices: 45199288--45199387 Score: 101
Period size: 23 Copynumber: 4.3 Consensus size: 23
45199278 GAATATTTAC
* *
45199288 TGTTCATTGCAAAGAATCCTCTT
1 TGTTCATTGCAAAGAATCTTCAT
* *
45199311 TGTTCATTGAAAAGAATCTTCAC
1 TGTTCATTGCAAAGAATCTTCAT
* *
45199334 TGTTCATTGGAAGGAATCTTCAT
1 TGTTCATTGCAAAGAATCTTCAT
* * * *
45199357 TGTTCATCGCAGAGAATTTTCAC
1 TGTTCATTGCAAAGAATCTTCAT
*
45199380 AGTTCATT
1 TGTTCATT
45199388 CGTCTTTTCT
Statistics
Matches: 62, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 62 1.00
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (23 bp):
TGTTCATTGCAAAGAATCTTCAT
Found at i:45199360 original size:46 final size:46
Alignment explanation
Indices: 45199286--45199387 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
45199276 ATGAATATTT
* *
45199286 ACTGTTCATTGCAAAGAATCCTCTTTGTTCATTGAAAAGAATCTTC
1 ACTGTTCATTGCAAAGAATCCTCATTGTTCATCGAAAAGAATCTTC
* * * * * *
45199332 ACTGTTCATTGGAAGGAATCTTCATTGTTCATCGCAGAGAATTTTC
1 ACTGTTCATTGCAAAGAATCCTCATTGTTCATCGAAAAGAATCTTC
*
45199378 ACAGTTCATT
1 ACTGTTCATT
45199388 CGTCTTTTCT
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.37
Consensus pattern (46 bp):
ACTGTTCATTGCAAAGAATCCTCATTGTTCATCGAAAAGAATCTTC
Found at i:45205336 original size:16 final size:17
Alignment explanation
Indices: 45205315--45205352 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
45205305 TGTTAGGATG
*
45205315 ATTTTGGGTTT-AGATT
1 ATTTTGAGTTTAAGATT
45205331 ATTTTGAGTTTAAGATT
1 ATTTTGAGTTTAAGATT
*
45205348 GTTTT
1 ATTTT
45205353 AAATTGAGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.58
Consensus pattern (17 bp):
ATTTTGAGTTTAAGATT
Found at i:45206961 original size:14 final size:15
Alignment explanation
Indices: 45206942--45206978 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
45206932 TATGGAAAAT
45206942 ATGAAAAAATAA-TA
1 ATGAAAAAATAAGTA
45206956 ATGAAAAAA-AAGTA
1 ATGAAAAAATAAGTA
45206970 A-GAAAAAAT
1 ATGAAAAAAT
45206979 TGAAAGTACT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (15 bp):
ATGAAAAAATAAGTA
Found at i:45209016 original size:30 final size:31
Alignment explanation
Indices: 45208922--45209016 Score: 77
Period size: 32 Copynumber: 3.1 Consensus size: 31
45208912 TGAATTCAAA
* * *
45208922 TGTATATGTTTTATATATT-TCCGAATTTATT
1 TGTATATGATATATATATTGT-CGAATTAATT
** * * * *
45208953 TACATATAGATATATACATTGCCGATTTGATT
1 TGTATAT-GATATATATATTGTCGAATTAATT
45208985 TGTATATG-TATATATATTGTCGAATTAATT
1 TGTATATGATATATATATTGTCGAATTAATT
45209015 TG
1 TG
45209017 AGCATTGGAT
Statistics
Matches: 48, Mismatches: 14, Indels: 5
0.72 0.21 0.07
Matches are distributed among these distances:
30 20 0.42
31 6 0.12
32 22 0.46
ACGTcount: A:0.31, C:0.07, G:0.13, T:0.49
Consensus pattern (31 bp):
TGTATATGATATATATATTGTCGAATTAATT
Found at i:45218130 original size:44 final size:44
Alignment explanation
Indices: 45218076--45218366 Score: 150
Period size: 44 Copynumber: 6.6 Consensus size: 44
45218066 TAATCCACTT
* * *
45218076 CACTACAACTTTAAGGAGATAGGATTGGTTTCTTCAATCTGCTC
1 CACTGCAACTTCAAGGAGATAAGATTGGTTTCTTCAATCTGCTC
* * * * * * *
45218120 CACTGTAACTTCAGGGAGATACGATTGGTTTATTCAGTTTGTTC
1 CACTGCAACTTCAAGGAGATAAGATTGGTTTCTTCAATCTGCTC
* ** *
45218164 CACTGCAACTT-TAGGTAGATAAGACTT-GTAACTTCAACCTGCTC
1 CACTGCAACTTCAAGG-AGATAAGA-TTGGTTTCTTCAATCTGCTC
* * * * * *
45218208 CACTGCAACTTCAGGGAGATAAGGTTGATTTATAGCTTTAATCAGTTC
1 CACTGCAACTTCAAGGAGATAAGATTG-GTT-T--CTTCAATCTGCTC
* * * * * * *
45218256 CACTACAACTTC-AGCGAAATAAGATTCGCTATCTTTAGTCAGCTC
1 CACTGCAACTTCAAG-GAGATAAGATT-GGTTTCTTCAATCTGCTC
* *
45218301 CACTGCAACTTCAGGGAGAT-A-A-T-GTTTGCTAT-GATCTGCTC
1 CACTGCAACTTCAAGGAGATAAGATTGGTTT-CT-TCAATCTGCTC
*
45218342 TACTGCAACTTC-AGAGAGATAAGAT
1 CACTGCAACTTCAAG-GAGATAAGAT
45218367 CTGTAATTTA
Statistics
Matches: 182, Mismatches: 48, Indels: 34
0.69 0.18 0.13
Matches are distributed among these distances:
40 3 0.02
41 24 0.13
42 3 0.02
43 6 0.03
44 81 0.45
45 31 0.17
46 1 0.01
47 2 0.01
48 30 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
CACTGCAACTTCAAGGAGATAAGATTGGTTTCTTCAATCTGCTC
Found at i:45218265 original size:48 final size:45
Alignment explanation
Indices: 45218023--45218322 Score: 141
Period size: 44 Copynumber: 6.7 Consensus size: 45
45218013 GGTCTGATGC
* * * *
45218023 AATCTGCTCTACTGCAACTTTAGAGAGATAAGA-TC-C-ATCATTTT
1 AATCAGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATC--TTT
* * * * * * * *
45218067 AATCCA-CTTCACTACAACTTTAAGGAGATAGGATT-GGTTTCTTC
1 AAT-CAGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTT
* * * * * * *
45218111 AATCTGCTCCACTGTAACTTCAGGGAGATACGATT-GGTTTATTC
1 AATCAGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTT
* ** * * * * *
45218155 AGTTTGTTCCACTGCAACTTTAGGTAGATAAGACTT-G-TAACTTC
1 AATCAGCTCCACTGCAACTTCAGGGAGATAAGA-TTCGCTATCTTT
* * * *
45218199 AACCTGCTCCACTGCAACTTCAGGGAGATAAGGTT-GATTTATAGCTTT
1 AATCAGCTCCACTGCAACTTCAGGGAGATAAGATTCG--CTAT--CTTT
* * * *
45218247 AATCAGTTCCACTACAACTTCAGCGAAATAAGATTCGCTATCTTT
1 AATCAGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTT
*
45218292 AGTCAGCTCCACTGCAACTTCAGGGAGATAA
1 AATCAGCTCCACTGCAACTTCAGGGAGATAA
45218323 TGTTTGCTAT
Statistics
Matches: 194, Mismatches: 50, Indels: 23
0.73 0.19 0.09
Matches are distributed among these distances:
43 4 0.02
44 116 0.60
45 35 0.18
46 4 0.02
47 3 0.02
48 31 0.16
49 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.32
Consensus pattern (45 bp):
AATCAGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTATCTTT
Found at i:45218332 original size:45 final size:46
Alignment explanation
Indices: 45218162--45218332 Score: 145
Period size: 45 Copynumber: 3.8 Consensus size: 46
45218152 TTCAGTTTGT
* * * * * * *
45218162 TCCACTGCAACTTTAGGTAGATAA-GACTTG-TAACTTCAACCTGC
1 TCCACTGCAACTTCAGGGAGATAATGATTTGCTATCTTTAATCAGC
* * *
45218206 TCCACTGCAACTTCAGGGAGATAAGGTTGATTT-ATAGCTTTAATCAGT
1 TCCACTGCAACTTCAGGGAGATAA---TGATTTGCTATCTTTAATCAGC
* * * * *
45218254 TCCACTACAACTTCAGCGAAATAA-GATTCGCTATCTTTAGTCAGC
1 TCCACTGCAACTTCAGGGAGATAATGATTTGCTATCTTTAATCAGC
45218299 TCCACTGCAACTTCAGGGAGATAATG-TTTGCTAT
1 TCCACTGCAACTTCAGGGAGATAATGATTTGCTAT
45218333 GATCTGCTCT
Statistics
Matches: 100, Mismatches: 20, Indels: 13
0.75 0.15 0.10
Matches are distributed among these distances:
44 26 0.26
45 39 0.39
46 1 0.01
48 34 0.34
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (46 bp):
TCCACTGCAACTTCAGGGAGATAATGATTTGCTATCTTTAATCAGC
Found at i:45230204 original size:4 final size:4
Alignment explanation
Indices: 45230195--45230237 Score: 77
Period size: 4 Copynumber: 10.8 Consensus size: 4
45230185 AATGGTATAT
*
45230195 TATG TATG TATT TATG TATG TATG TATG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
45230238 AATAAAAATA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.53
Consensus pattern (4 bp):
TATG
Found at i:45230543 original size:3 final size:3
Alignment explanation
Indices: 45230535--45230593 Score: 57
Period size: 3 Copynumber: 19.0 Consensus size: 3
45230525 ATAACCAAAT
* * *
45230535 ATA ATA AT- ATCA ATA ACA ATA ATAA ATA GTA ATA ATA ACA ATA ATA
1 ATA ATA ATA AT-A ATA ATA ATA AT-A ATA ATA ATA ATA ATA ATA ATA
45230581 ATA ATA ATTA ATA
1 ATA ATA A-TA ATA
45230594 GCAAAAATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
2 2 0.04
3 36 0.78
4 8 0.17
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:45230567 original size:28 final size:27
Alignment explanation
Indices: 45230531--45230587 Score: 87
Period size: 28 Copynumber: 2.1 Consensus size: 27
45230521 AAATATAACC
*
45230531 AAATATAATAATATCAATAACAATAAT
1 AAATATAATAATAACAATAACAATAAT
*
45230558 AAATAGTAATAATAACAATAATAATAAT
1 AAATA-TAATAATAACAATAACAATAAT
45230586 AA
1 AA
45230588 TTAATAGCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 5 0.19
28 22 0.81
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (27 bp):
AAATATAATAATAACAATAACAATAAT
Found at i:45230592 original size:22 final size:22
Alignment explanation
Indices: 45230535--45230602 Score: 77
Period size: 22 Copynumber: 3.1 Consensus size: 22
45230525 ATAACCAAAT
*
45230535 ATAATAAT-ATCAATAACAATA
1 ATAATAATAATTAATAACAATA
*
45230556 ATAAATAGTAA-TAATAACAATA
1 AT-AATAATAATTAATAACAATA
* *
45230578 ATAATAATAATTAATAGCAAAA
1 ATAATAATAATTAATAACAATA
45230600 ATA
1 ATA
45230603 TCAAACAGGA
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 9 0.23
22 29 0.74
23 1 0.03
ACGTcount: A:0.63, C:0.06, G:0.03, T:0.28
Consensus pattern (22 bp):
ATAATAATAATTAATAACAATA
Found at i:45235144 original size:20 final size:20
Alignment explanation
Indices: 45235121--45235182 Score: 52
Period size: 20 Copynumber: 3.1 Consensus size: 20
45235111 TACTGACAGT
45235121 TTATCTGCAATACTGGTGGC
1 TTATCTGCAATACTGGTGGC
** * ****
45235141 TTATCCACAATATTGGCAAT
1 TTATCTGCAATACTGGTGGC
*
45235161 TTATATGCAATACTGGTGGC
1 TTATCTGCAATACTGGTGGC
45235181 TT
1 TT
45235183 GTCCACAATA
Statistics
Matches: 27, Mismatches: 15, Indels: 0
0.64 0.36 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.26, C:0.18, G:0.19, T:0.37
Consensus pattern (20 bp):
TTATCTGCAATACTGGTGGC
Found at i:45235175 original size:40 final size:40
Alignment explanation
Indices: 45235120--45235234 Score: 142
Period size: 40 Copynumber: 2.9 Consensus size: 40
45235110 GTACTGACAG
* * *
45235120 TTTATCTGCAATACTGGTGGCTTATCCACAATATTGGCAA
1 TTTATATGCAATACTGGTGGCTTGTCCACAATATTAGCAA
* *
45235160 TTTATATGCAATACTGGTGGCTTGTCCACAATACTATCAA
1 TTTATATGCAATACTGGTGGCTTGTCCACAATATTAGCAA
* * *
45235200 TTTATTTGTAATTACTGGTGGTTTGTCCAC-ATATT
1 TTTATATGCAA-TACTGGTGGCTTGTCCACAATATT
45235235 CCTGGTAGCT
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
40 48 0.74
41 17 0.26
ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40
Consensus pattern (40 bp):
TTTATATGCAATACTGGTGGCTTGTCCACAATATTAGCAA
Found at i:45235261 original size:43 final size:43
Alignment explanation
Indices: 45235209--45235316 Score: 153
Period size: 43 Copynumber: 2.5 Consensus size: 43
45235199 ATTTATTTGT
* *
45235209 AATTACTGGTGGTTTGTCCACATATTCCTGGTAGCTTGAATGC
1 AATTACTGGTGGTTTGTCCACATATTCCTGGCAACTTGAATGC
* * * *
45235252 AATTACTGGTGGCTTGTCCATATATTTCTGGCAACTTGACTGC
1 AATTACTGGTGGTTTGTCCACATATTCCTGGCAACTTGAATGC
*
45235295 AATTACTGGTAGTTTGTCCACA
1 AATTACTGGTGGTTTGTCCACA
45235317 AAATGGTGTG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.37
Consensus pattern (43 bp):
AATTACTGGTGGTTTGTCCACATATTCCTGGCAACTTGAATGC
Found at i:45240050 original size:14 final size:15
Alignment explanation
Indices: 45240031--45240059 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
45240021 TTCACTATTA
45240031 TGTCTTTG-TATTTT
1 TGTCTTTGATATTTT
45240045 TGTCTTTGATATTTT
1 TGTCTTTGATATTTT
45240060 GCATGTATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (15 bp):
TGTCTTTGATATTTT
Found at i:45241205 original size:19 final size:18
Alignment explanation
Indices: 45241151--45241199 Score: 62
Period size: 19 Copynumber: 2.7 Consensus size: 18
45241141 TTTTCTCAAA
45241151 AAATTAATTAAACTAATC
1 AAATTAATTAAACTAATC
* * *
45241169 AAGTAAAATTAAAGTAATC
1 AAAT-TAATTAAACTAATC
45241188 AAATTAATTAAA
1 AAATTAATTAAA
45241200 ATTAATATGC
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
18 10 0.40
19 15 0.60
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.31
Consensus pattern (18 bp):
AAATTAATTAAACTAATC
Found at i:45244474 original size:37 final size:37
Alignment explanation
Indices: 45244397--45244528 Score: 144
Period size: 37 Copynumber: 3.6 Consensus size: 37
45244387 AGTACACAAG
45244397 TAATCCAACCAA-AACACG-CAAATCGCTCATAA-ATGC
1 TAATCCAACCAATAACACGCCAAA-CGCTCATAAGA-GC
* ** * * *
45244433 TAATCCACCCGCTAGCATGCCAAACGCTCATAAGAGA
1 TAATCCAACCAATAACACGCCAAACGCTCATAAGAGC
* *
45244470 TAATCCAACCAATAACACGCCAATCGCTCAAAAGAGC
1 TAATCCAACCAATAACACGCCAAACGCTCATAAGAGC
*
45244507 TAATCCAATCAATAACACGCCA
1 TAATCCAACCAATAACACGCCA
45244529 CGACACTAAG
Statistics
Matches: 78, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
36 9 0.12
37 64 0.82
38 5 0.06
ACGTcount: A:0.42, C:0.32, G:0.11, T:0.16
Consensus pattern (37 bp):
TAATCCAACCAATAACACGCCAAACGCTCATAAGAGC
Found at i:45252817 original size:22 final size:22
Alignment explanation
Indices: 45252792--45252845 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 22
45252782 TGCTAAGAGA
45252792 AAAACCATTTACTTGAAAGATC
1 AAAACCATTTACTTGAAAGATC
*
45252814 AAAACCAAACATTTTCTTGAAAGATC
1 AAAA-C---CATTTACTTGAAAGATC
45252840 AAAACC
1 AAAACC
45252846 TTCTAGACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 8
0.75 0.03 0.22
Matches are distributed among these distances:
22 5 0.19
23 1 0.04
25 1 0.04
26 20 0.74
ACGTcount: A:0.48, C:0.20, G:0.07, T:0.24
Consensus pattern (22 bp):
AAAACCATTTACTTGAAAGATC
Found at i:45258993 original size:22 final size:23
Alignment explanation
Indices: 45258968--45259020 Score: 63
Period size: 26 Copynumber: 2.2 Consensus size: 23
45258958 TACTAAGAGA
*
45258968 AAAAC-TATTTTCTTGTAAGATC
1 AAAACATATTTTCTTGAAAGATC
45258990 AAAACCAAATATTTTCTTGAAAGATC
1 AAAA-C--ATATTTTCTTGAAAGATC
45259016 AAAAC
1 AAAAC
45259021 CTTCTGGGCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 4 0.15
23 1 0.04
25 1 0.04
26 20 0.77
ACGTcount: A:0.45, C:0.15, G:0.08, T:0.32
Consensus pattern (23 bp):
AAAACATATTTTCTTGAAAGATC
Found at i:45265095 original size:19 final size:19
Alignment explanation
Indices: 45265067--45265105 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
45265057 AGCGACAAAA
45265067 TACGGCCCTGTGGGAATGT
1 TACGGCCCTGTGGGAATGT
*
45265086 TACGGTCCTGTGGGAATGT
1 TACGGCCCTGTGGGAATGT
45265105 T
1 T
45265106 TAATTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.15, C:0.18, G:0.36, T:0.31
Consensus pattern (19 bp):
TACGGCCCTGTGGGAATGT
Found at i:45265378 original size:21 final size:21
Alignment explanation
Indices: 45265352--45265394 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
45265342 TGCCTGCAGG
45265352 AGTTTTATCAGAATTTACGTA
1 AGTTTTATCAGAATTTACGTA
45265373 AGTTTTATCAGAATTTACGTA
1 AGTTTTATCAGAATTTACGTA
45265394 A
1 A
45265395 AACAACGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.09, G:0.14, T:0.42
Consensus pattern (21 bp):
AGTTTTATCAGAATTTACGTA
Found at i:45269488 original size:22 final size:22
Alignment explanation
Indices: 45269461--45269506 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
45269451 TTTACTCAGA
45269461 AAAAAAAAGTTGAATACCAATG
1 AAAAAAAAGTTGAATACCAATG
45269483 AAAAAAAAGTTGAATACCAATG
1 AAAAAAAAGTTGAATACCAATG
45269505 AA
1 AA
45269507 TTCTAGTTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.61, C:0.09, G:0.13, T:0.17
Consensus pattern (22 bp):
AAAAAAAAGTTGAATACCAATG
Found at i:45271279 original size:16 final size:18
Alignment explanation
Indices: 45271244--45271281 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
45271234 ATCCTTATTT
*
45271244 AAATAAAATATAGTAGTA
1 AAATAAAATATAGAAGTA
45271262 AAATAAAATA-A-AAGTA
1 AAATAAAATATAGAAGTA
45271278 AAAT
1 AAAT
45271282 TCATATAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
18 10 0.53
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (18 bp):
AAATAAAATATAGAAGTA
Found at i:45280960 original size:25 final size:25
Alignment explanation
Indices: 45280900--45280960 Score: 72
Period size: 24 Copynumber: 2.5 Consensus size: 25
45280890 GCTATTTGGT
45280900 GCTACCCGTTA-AGTGCTCTTCGGA
1 GCTACCCGTTATAGTGCTCTTCGGA
**
45280924 GCTACCTATTATAG-GCTCTTCGTGA
1 GCTACCCGTTATAGTGCTCTTCG-GA
*
45280949 GCTTCCCGTTAT
1 GCTACCCGTTAT
45280961 TAAGCCCGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 17 0.57
25 13 0.43
ACGTcount: A:0.16, C:0.28, G:0.21, T:0.34
Consensus pattern (25 bp):
GCTACCCGTTATAGTGCTCTTCGGA
Found at i:45291257 original size:29 final size:29
Alignment explanation
Indices: 45291214--45291270 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 29
45291204 CAATGGTGCC
* *
45291214 TTCGAACCAATAACTCGAATATCACTTGG
1 TTCGAACCAACAACTCGAATAACACTTGG
45291243 TTCGAACCAACAACTCGAATAACACTTG
1 TTCGAACCAACAACTCGAATAACACTTG
45291271 TCACCGGGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.37, C:0.26, G:0.12, T:0.25
Consensus pattern (29 bp):
TTCGAACCAACAACTCGAATAACACTTGG
Found at i:45293039 original size:2 final size:2
Alignment explanation
Indices: 45293034--45293067 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
45293024 CTCCCCCCCC
45293034 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
45293068 TTTATTTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:45299350 original size:25 final size:24
Alignment explanation
Indices: 45299291--45299454 Score: 100
Period size: 25 Copynumber: 6.7 Consensus size: 24
45299281 CCTGTTAGTA
* *
45299291 GCTCTCATGAGCATCCTGATATTG
1 GCTCTCATGAGCTTCCTAATATTG
*
45299315 GCTCTCTTGAGCTTCCTAATATTTG
1 GCTCTCATGAGCTTCCTAATA-TTG
* *
45299340 GCTCTCATGAGCTTCCCGTTAT-TTA
1 GCTCTCATGAGCTT-CC-TAATATTG
* * *
45299365 GCTCTTATGAGCATCTCGACATA-TG
1 GCTCTCATGAGCTTC-CTA-ATATTG
* * * * *
45299390 GCTCTTACGAGCTTCCCGATTAATG
1 GCTCTCATGAGCTT-CCTAATATTG
* *
45299415 GCTCTTCA-GAGCTACCCAATATTG
1 GCTC-TCATGAGCTTCCTAATATTG
*
45299439 GCTCGCATGAGCTTCC
1 GCTCTCATGAGCTTCC
45299455 CGATTATGAC
Statistics
Matches: 109, Mismatches: 21, Indels: 20
0.73 0.14 0.13
Matches are distributed among these distances:
23 2 0.02
24 39 0.36
25 60 0.55
26 5 0.05
27 3 0.03
ACGTcount: A:0.20, C:0.27, G:0.19, T:0.34
Consensus pattern (24 bp):
GCTCTCATGAGCTTCCTAATATTG
Found at i:45306823 original size:24 final size:24
Alignment explanation
Indices: 45306796--45306847 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
45306786 AGCGTCCAGT
*
45306796 TATTAGCTCTCGTGAGCATCCTGA
1 TATTAGCACTCGTGAGCATCCTGA
* * *
45306820 TATTGGCACTCTTGAGCTTCCTGA
1 TATTAGCACTCGTGAGCATCCTGA
45306844 TATT
1 TATT
45306848 TGACTCTCAC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.19, C:0.23, G:0.19, T:0.38
Consensus pattern (24 bp):
TATTAGCACTCGTGAGCATCCTGA
Found at i:45306937 original size:25 final size:25
Alignment explanation
Indices: 45306883--45306930 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
45306873 TAGCTATTAT
* *
45306883 GAGCATCCCAATTTATGGCTCTTAC
1 GAGCTTCCCAATTAATGGCTCTTAC
*
45306908 GAGCTTCCCGATTAATGGCTCTT
1 GAGCTTCCCAATTAATGGCTCTT
45306931 CGAAGCTACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.21, C:0.27, G:0.19, T:0.33
Consensus pattern (25 bp):
GAGCTTCCCAATTAATGGCTCTTAC
Found at i:45332729 original size:4 final size:4
Alignment explanation
Indices: 45332720--45332753 Score: 50
Period size: 4 Copynumber: 8.0 Consensus size: 4
45332710 AAGTTTTATT
45332720 TTTA TTTA TTTA TTTA TTTA TTTTA TTTA GTTTA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA
45332754 AATTTTTATA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 20 0.71
5 8 0.29
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:45332761 original size:22 final size:22
Alignment explanation
Indices: 45332703--45332762 Score: 61
Period size: 22 Copynumber: 2.7 Consensus size: 22
45332693 AAGTGGCCCA
*
45332703 AGTTGTAAAGTTTTATTTTTATTT
1 AGTT-TAAATTTTTA-TTTTATTT
*
45332727 A-TTT-ATTTATTTATTTTATTT
1 AGTTTAAATT-TTTATTTTATTT
45332748 AGTTTAAATTTTTAT
1 AGTTTAAATTTTTAT
45332763 ATTCAGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
21 11 0.37
22 13 0.43
23 5 0.17
24 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (22 bp):
AGTTTAAATTTTTATTTTATTT
Found at i:45334805 original size:4 final size:4
Alignment explanation
Indices: 45334796--45334848 Score: 97
Period size: 4 Copynumber: 13.2 Consensus size: 4
45334786 TTCATTGATT
*
45334796 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAT ATAA ATAA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
45334844 ATAA A
1 ATAA A
45334849 CCTTCATCTT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:45335030 original size:22 final size:22
Alignment explanation
Indices: 45335005--45335046 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
45334995 AAATTAAAAA
45335005 AAAAAGAA-AAACGAATCAATCC
1 AAAAAGAATAAA-GAATCAATCC
*
45335027 AAAAATAATAAAGAATCAAT
1 AAAAAGAATAAAGAATCAAT
45335047 TCATTCTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.67, C:0.12, G:0.07, T:0.14
Consensus pattern (22 bp):
AAAAAGAATAAAGAATCAATCC
Found at i:45338132 original size:3 final size:3
Alignment explanation
Indices: 45338119--45338155 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
45338109 CCAAACATGC
*
45338119 AAG ATG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
45338156 TGATGATTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.65, C:0.00, G:0.32, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:45348295 original size:13 final size:13
Alignment explanation
Indices: 45348277--45348322 Score: 74
Period size: 13 Copynumber: 3.5 Consensus size: 13
45348267 TAGTTTCTCG
*
45348277 AAAAAAAACTCAA
1 AAAAAAAATTCAA
45348290 AAAAAAAATTCAA
1 AAAAAAAATTCAA
*
45348303 AAAAAAAATTCGA
1 AAAAAAAATTCAA
45348316 AAAAAAA
1 AAAAAAA
45348323 CTAGTTTCCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 31 1.00
ACGTcount: A:0.78, C:0.09, G:0.02, T:0.11
Consensus pattern (13 bp):
AAAAAAAATTCAA
Found at i:45348385 original size:13 final size:13
Alignment explanation
Indices: 45348367--45348413 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
45348357 AAGTTGTGAA
45348367 AAAAAAATTTGTG
1 AAAAAAATTTGTG
*
45348380 AAAAAAAATTGTG
1 AAAAAAATTTGTG
45348393 AAAAAAAAATTT-TG
1 --AAAAAAATTTGTG
45348407 AAAAAAA
1 AAAAAAA
45348414 AAGAGAGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
12 7 0.23
13 12 0.40
14 2 0.07
15 9 0.30
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (13 bp):
AAAAAAATTTGTG
Found at i:45348385 original size:14 final size:15
Alignment explanation
Indices: 45348360--45348415 Score: 91
Period size: 14 Copynumber: 3.9 Consensus size: 15
45348350 GGATATCAAG
45348360 TTGTGAAAAAAAAAT
1 TTGTGAAAAAAAAAT
45348375 TTGTG-AAAAAAAA-
1 TTGTGAAAAAAAAAT
45348388 TTGTGAAAAAAAAAT
1 TTGTGAAAAAAAAAT
45348403 TT-TGAAAAAAAAA
1 TTGTGAAAAAAAAA
45348416 GAGAGCTAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
13 5 0.13
14 27 0.69
15 7 0.18
ACGTcount: A:0.62, C:0.00, G:0.12, T:0.25
Consensus pattern (15 bp):
TTGTGAAAAAAAAAT
Found at i:45348415 original size:28 final size:28
Alignment explanation
Indices: 45348360--45348414 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
45348350 GGATATCAAG
45348360 TTGTGAAAAAAAAATTTGTGAAAAAAAA
1 TTGTGAAAAAAAAATTTGTGAAAAAAAA
45348388 TTGTGAAAAAAAAATTT-TGAAAAAAAA
1 TTGTGAAAAAAAAATTTGTGAAAAAAAA
45348415 AGAGAGCTAG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
27 10 0.37
28 17 0.63
ACGTcount: A:0.62, C:0.00, G:0.13, T:0.25
Consensus pattern (28 bp):
TTGTGAAAAAAAAATTTGTGAAAAAAAA
Found at i:45367358 original size:23 final size:24
Alignment explanation
Indices: 45367332--45367384 Score: 56
Period size: 23 Copynumber: 2.2 Consensus size: 24
45367322 GTGTTCTTCG
*
45367332 AGTGATTTCTTCA-ATCTTC-TCTA
1 AGTGATTCCTT-AGATCTTCTTCTA
*
45367355 AGTGCTTCCTTAGATCTTCTTCTA
1 AGTGATTCCTTAGATCTTCTTCTA
*
45367379 ATTGAT
1 AGTGAT
45367385 ATTTATAGAC
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
22 1 0.04
23 15 0.62
24 8 0.33
ACGTcount: A:0.21, C:0.21, G:0.11, T:0.47
Consensus pattern (24 bp):
AGTGATTCCTTAGATCTTCTTCTA
Found at i:45368899 original size:20 final size:20
Alignment explanation
Indices: 45368874--45368920 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
45368864 ACCTTTGTCA
45368874 ATGATTTGTTGACACGTATC
1 ATGATTTGTTGACACGTATC
45368894 ATGATTTGTTGACACGTATC
1 ATGATTTGTTGACACGTATC
45368914 ATGATTT
1 ATGATTT
45368921 CTCTCTACTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.43
Consensus pattern (20 bp):
ATGATTTGTTGACACGTATC
Found at i:45369675 original size:22 final size:22
Alignment explanation
Indices: 45369629--45369691 Score: 90
Period size: 22 Copynumber: 2.7 Consensus size: 22
45369619 TTTTTCTAAT
*
45369629 AAAATGATTAATGCTTAGAAAAATG
1 AAAATGATTAA--ATTA-AAAAATG
45369654 AAAATGATTAAATTAAAAAATG
1 AAAATGATTAAATTAAAAAATG
45369676 AAAATGATTAAATTAA
1 AAAATGATTAAATTAA
45369692 CATAATTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
22 23 0.62
23 3 0.08
25 11 0.30
ACGTcount: A:0.59, C:0.02, G:0.11, T:0.29
Consensus pattern (22 bp):
AAAATGATTAAATTAAAAAATG
Found at i:45370924 original size:19 final size:19
Alignment explanation
Indices: 45370860--45370924 Score: 58
Period size: 19 Copynumber: 3.2 Consensus size: 19
45370850 GGTCCCTTTT
45370860 TCAGGAAATCGCGTCCACG
1 TCAGGAAATCGCGTCCACG
* * * *
45370879 TCAGCGCGATATCAGGGTACGCG
1 TCA--G-GAAATC-GCGTCCACG
45370902 TCAGGAAATCGCGTCCACG
1 TCAGGAAATCGCGTCCACG
45370921 TCAG
1 TCAG
45370925 CGCGAGATGC
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
19 13 0.38
20 5 0.15
21 2 0.06
22 5 0.15
23 9 0.26
ACGTcount: A:0.25, C:0.29, G:0.29, T:0.17
Consensus pattern (19 bp):
TCAGGAAATCGCGTCCACG
Found at i:45371564 original size:205 final size:206
Alignment explanation
Indices: 45371212--45371623 Score: 799
Period size: 205 Copynumber: 2.0 Consensus size: 206
45371202 TTCAAACTTG
*
45371212 TTACGAATAAAATTTGAACCAAGGTACTAAGGGAAAAGAGTACGCATCTTAACCAAGTAAGCTAA
1 TTACGAATAAAATTTGAACCAAGGTACTAAGGGAAAAGAGTAAGCATCTTAACCAAGTAAGCTAA
45371277 ACTAATTAATTAACATATTATAGAAATACTGTTATTATCTTAATTATATTATTTACGTTCTAACG
66 ACTAATTAATTAACATATTATAGAAATACTGTTATTATCTTAATTATATTATTTACGTTCTAACG
45371342 ATTTATCGGACCTATTCCATACAAGTGTCAAATCAGAAAAAATAATACAACAATTCTGT-AAAAA
131 ATTTATCGGACCTATTCCATACAAGTGTCAAATCAGAAAAAATAATACAACAATTCTGTAAAAAA
45371406 AAATCCGGTGT
196 AAATCCGGTGT
45371417 TTACGAATAAAATTTGAACCAAGGTACTAAGGGAAAAGAGTAAGCATCTTAACCAAGTAAGCTAA
1 TTACGAATAAAATTTGAACCAAGGTACTAAGGGAAAAGAGTAAGCATCTTAACCAAGTAAGCTAA
45371482 ACTAATTAATTAACATATTATAGAAATACTGTTATTATCTTAATTATATTATTTACGTTCTAACG
66 ACTAATTAATTAACATATTATAGAAATACTGTTATTATCTTAATTATATTATTTACGTTCTAACG
*
45371547 ATTTATCGGACCTATTCCATACACGTGTCAAATCAGAAAAAATAATACAACAATTCTGTAAAAAA
131 ATTTATCGGACCTATTCCATACAAGTGTCAAATCAGAAAAAATAATACAACAATTCTGTAAAAAA
45371612 AAATCCGGTGT
196 AAATCCGGTGT
45371623 T
1 T
45371624 NNNNNNNNNT
Statistics
Matches: 204, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
205 187 0.92
206 17 0.08
ACGTcount: A:0.42, C:0.15, G:0.12, T:0.31
Consensus pattern (206 bp):
TTACGAATAAAATTTGAACCAAGGTACTAAGGGAAAAGAGTAAGCATCTTAACCAAGTAAGCTAA
ACTAATTAATTAACATATTATAGAAATACTGTTATTATCTTAATTATATTATTTACGTTCTAACG
ATTTATCGGACCTATTCCATACAAGTGTCAAATCAGAAAAAATAATACAACAATTCTGTAAAAAA
AAATCCGGTGT
Found at i:45371987 original size:200 final size:200
Alignment explanation
Indices: 45371639--45372036 Score: 789
Period size: 199 Copynumber: 2.0 Consensus size: 200
45371629 NNNNTAAGGA
45371639 AAATAATGATTTGAATGTTTCAAAATTCAATTTTAAACCGAAAAAATCAAAATTTAGGGGCAAAA
1 AAATAATGATTTGAATGTTTCAAAATTCAATTTTAAACCGAAAAAATCAAAATTTAGGGGCAAAA
45371704 AATGATCTTTTTCGACGAAAACTGTGGCAAACCGCCTTCGGCTGTTTGTTAGCGCGTAGATCTCG
66 AATGATCTTTTTCGACGAAAACTGTGGCAAACCGCCTTCGGCTGTTTGTTAGCGCGTAGATCTCG
45371769 AAAAGTTATTTGAAAAAAAATCGTCTCAATCGGACAACCGAGCCAAAAGTTATGGCATTTCAAAG
131 AAAAGTTATTTGAAAAAAAATCGTCTCAATCGGACAACCGAGCCAAAAGTTATGGCATTTCAAAG
45371834 TTTTG
196 TTTTG
45371839 AAATAATGATTTGAATGTTTCAAAATTCAATTTTAAACCG-AAAAATCAAAATTTAGGGGCAAAA
1 AAATAATGATTTGAATGTTTCAAAATTCAATTTTAAACCGAAAAAATCAAAATTTAGGGGCAAAA
45371903 AATGATCTTTTTCGACGAAAACTGTGGCAAACCGCCTTCGGCTGTTTGTTAGCGCGTAGATCTCG
66 AATGATCTTTTTCGACGAAAACTGTGGCAAACCGCCTTCGGCTGTTTGTTAGCGCGTAGATCTCG
45371968 AAAAGTTATTTGAAAAAAAATCGTCTCAATCGGACAACCGAGCCAAAAGTTATGGCATTTCAAAG
131 AAAAGTTATTTGAAAAAAAATCGTCTCAATCGGACAACCGAGCCAAAAGTTATGGCATTTCAAAG
45372033 TTTT
196 TTTT
45372037 CCAAGCTAAA
Statistics
Matches: 198, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
199 158 0.80
200 40 0.20
ACGTcount: A:0.37, C:0.16, G:0.18, T:0.29
Consensus pattern (200 bp):
AAATAATGATTTGAATGTTTCAAAATTCAATTTTAAACCGAAAAAATCAAAATTTAGGGGCAAAA
AATGATCTTTTTCGACGAAAACTGTGGCAAACCGCCTTCGGCTGTTTGTTAGCGCGTAGATCTCG
AAAAGTTATTTGAAAAAAAATCGTCTCAATCGGACAACCGAGCCAAAAGTTATGGCATTTCAAAG
TTTTG
Found at i:45373877 original size:42 final size:42
Alignment explanation
Indices: 45373818--45373904 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
45373808 GCAAGGTTAG
45373818 GCTATTGTCAGAATATCATTTCAACTATGCCTCTTATGTATT
1 GCTATTGTCAGAATATCATTTCAACTATGCCTCTTATGTATT
45373860 GCTATTGTCAGAATATCATTTCAACTATGCCTCTTATGTATT
1 GCTATTGTCAGAATATCATTTCAACTATGCCTCTTATGTATT
45373902 GCT
1 GCT
45373905 GATGCTACAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.43
Consensus pattern (42 bp):
GCTATTGTCAGAATATCATTTCAACTATGCCTCTTATGTATT
Found at i:45409315 original size:45 final size:45
Alignment explanation
Indices: 45409265--45409388 Score: 151
Period size: 45 Copynumber: 2.8 Consensus size: 45
45409255 TTGCTTATTC
* * * **
45409265 AGTCTGCCCCGCTGCAATTTCAGGGGGATAAGACTTGCTTTCTTG
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCACTTTCTTG
45409310 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCACTTTCTTG
1 AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCACTTTCTTG
* * * *
45409355 GGT-TAGCTCCTCTGCAACTTCAGGGTGATAAGAC
1 AGTCT-GCTCCACTGCAATTTCAGGGAGATAAGAC
45409389 CTGATATGAC
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
44 1 0.01
45 68 0.99
ACGTcount: A:0.22, C:0.24, G:0.24, T:0.30
Consensus pattern (45 bp):
AGTCTGCTCCACTGCAATTTCAGGGAGATAAGACTCACTTTCTTG
Found at i:45409675 original size:50 final size:50
Alignment explanation
Indices: 45409616--45409775 Score: 146
Period size: 50 Copynumber: 3.2 Consensus size: 50
45409606 CACCGTCATA
45409616 GCTTCAATCTGTTCCACTATACTGCCAAGGAAGTAAGATTCGCCGTTGCG
1 GCTTCAATCTGTTCCACTATACTGCCAAGGAAGTAAGATTCGCCGTTGCG
* ** * * * ** * **
45409666 GCTTCAATCTTTTTAATTACAATATTG--GA-GAAACAAGATTCGCCGTCGTA
1 GCTTCAATC-TGTT--CCACTATACTGCCAAGGAAGTAAGATTCGCCGTTGCG
* * *
45409716 GCTTCAATCTGTTCCACTACACTGCCAGGGGAGTAAGATTCGCCGTTGCG
1 GCTTCAATCTGTTCCACTATACTGCCAAGGAAGTAAGATTCGCCGTTGCG
45409766 GCTTCAATCT
1 GCTTCAATCT
45409776 TTTTAATTGC
Statistics
Matches: 79, Mismatches: 25, Indels: 12
0.68 0.22 0.10
Matches are distributed among these distances:
47 6 0.08
49 3 0.04
50 59 0.75
51 4 0.05
53 7 0.09
ACGTcount: A:0.25, C:0.24, G:0.21, T:0.30
Consensus pattern (50 bp):
GCTTCAATCTGTTCCACTATACTGCCAAGGAAGTAAGATTCGCCGTTGCG
Found at i:45409720 original size:100 final size:100
Alignment explanation
Indices: 45409595--45409783 Score: 333
Period size: 100 Copynumber: 1.9 Consensus size: 100
45409585 GATATGTCGG
*
45409595 GAAACAAGATTCACCGTCATAGCTTCAATCTGTTCCACTATACTGCCAAGGAAGTAAGATTCGCC
1 GAAACAAGATTCACCGTCATAGCTTCAATCTGTTCCACTACACTGCCAAGGAAGTAAGATTCGCC
45409660 GTTGCGGCTTCAATCTTTTTAATTACAATATTGGA
66 GTTGCGGCTTCAATCTTTTTAATTACAATATTGGA
* * * *
45409695 GAAACAAGATTCGCCGTCGTAGCTTCAATCTGTTCCACTACACTGCCAGGGGAGTAAGATTCGCC
1 GAAACAAGATTCACCGTCATAGCTTCAATCTGTTCCACTACACTGCCAAGGAAGTAAGATTCGCC
45409760 GTTGCGGCTTCAATCTTTTTAATT
66 GTTGCGGCTTCAATCTTTTTAATT
45409784 GCAAGATTCG
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 84 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (100 bp):
GAAACAAGATTCACCGTCATAGCTTCAATCTGTTCCACTACACTGCCAAGGAAGTAAGATTCGCC
GTTGCGGCTTCAATCTTTTTAATTACAATATTGGA
Found at i:45409797 original size:36 final size:36
Alignment explanation
Indices: 45409750--45409823 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
45409740 CCAGGGGAGT
45409750 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGC
1 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGC
45409786 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGC
1 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGC
45409822 AA
1 AA
45409824 TGTTGGGGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.38
Consensus pattern (36 bp):
AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGC
Found at i:45409894 original size:136 final size:136
Alignment explanation
Indices: 45409650--45409923 Score: 469
Period size: 136 Copynumber: 2.0 Consensus size: 136
45409640 CCAAGGAAGT
45409650 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTACAATATTGGAGAAACAAGATTCGCCGTCGT
1 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTACAATATTGGAGAAACAAGATTCGCCGTCGT
** *
45409715 AGCTTCAATCTGTTCCACTACACTGCCAGGGGAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTT
66 AGCTTCAATCAATTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTT
45409780 AATTGC
131 AATTGC
* * * *
45409786 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTTC-CCGTCG
1 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTACAATATTGGAGAAACAAGA-TTCGCCGTCG
45409850 TAGCTTCAATCAATTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGCGGCTTCAATCTTTT
65 TAGCTTCAATCAATTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGCGGCTTCAATCTTTT
45409915 TAATTGC
130 TAATTGC
45409922 AA
1 AA
45409924 TTTTGGGGAA
Statistics
Matches: 130, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
136 127 0.98
137 3 0.02
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (136 bp):
AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTACAATATTGGAGAAACAAGATTCGCCGTCGT
AGCTTCAATCAATTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTT
AATTGC
Found at i:45410039 original size:99 final size:100
Alignment explanation
Indices: 45409786--45410209 Score: 683
Period size: 99 Copynumber: 4.3 Consensus size: 100
45409776 TTTTAATTGC
*
45409786 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTTC-CCGTCG
1 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGA-TTCACCGTCG
*
45409850 TAGCTTCAATCAATTCCACTACACCGCCAGGGGAGT
65 TAGCTTCAATCTATTCCACTACACCGCCAGGGGAGT
* *
45409886 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATTTTGGGGAAATAAGATTCACCGTCGT
1 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCACCGTCGT
*
45409951 AGCTTCAATCTGTTCCACTACACCGCCAGGGGAGT
66 AGCTTCAATCTATTCCACTACACCGCCAGGGGAGT
* *
45409986 AAG-TTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCGTCGT
1 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCACCGTCGT
*
45410050 AGCTTCAATCTATTCCACTACATCGCCAGGGGAGT
66 AGCTTCAATCTATTCCACTACACCGCCAGGGGAGT
* *
45410085 AAGA-TCGCCGTTGCGGCTTCAATCTTTTTAATTGTAATGTTGGGGAAACAAGATTCACCATCGT
1 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCACCGTCGT
* *
45410149 ACCTTCAATCTGTTCCACTACACCGCCAGGGGAGT
66 AGCTTCAATCTATTCCACTACACCGCCAGGGGAGT
* * *
45410184 AAGATTCACCGTTGTGGTTTCAATCT
1 AAGATTCGCCGTTGCGGCTTCAATCT
45410210 GCGCCACTGT
Statistics
Matches: 300, Mismatches: 21, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
99 188 0.63
100 112 0.37
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (100 bp):
AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCACCGTCGT
AGCTTCAATCTATTCCACTACACCGCCAGGGGAGT
Found at i:45410138 original size:49 final size:49
Alignment explanation
Indices: 45409990--45410138 Score: 133
Period size: 49 Copynumber: 3.0 Consensus size: 49
45409980 GGGAGTAAGT
*
45409990 TCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGA
1 TCGCCGTTGTGGCTTCAATCTTTTTAATTGTAATGTTGGGGAAACAAGA
* * * ** * ** **
45410039 TTCGCCGTCGTAGCTTCAATCTATTCCA--CTACATCGCCAGGGG-AGTAAGA
1 -TCGCCGTTGTGGCTTCAATCTTTTTAATTGTA-AT-G-TTGGGGAAACAAGA
*
45410089 TCGCCGTTGCGGCTTCAATCTTTTTAATTGTAATGTTGGGGAAACAAGA
1 TCGCCGTTGTGGCTTCAATCTTTTTAATTGTAATGTTGGGGAAACAAGA
45410138 T
1 T
45410139 TCACCATCGT
Statistics
Matches: 71, Mismatches: 22, Indels: 13
0.67 0.21 0.12
Matches are distributed among these distances:
48 5 0.07
49 30 0.42
50 30 0.42
51 6 0.08
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.32
Consensus pattern (49 bp):
TCGCCGTTGTGGCTTCAATCTTTTTAATTGTAATGTTGGGGAAACAAGA
Found at i:45410198 original size:199 final size:200
Alignment explanation
Indices: 45409786--45410209 Score: 719
Period size: 199 Copynumber: 2.1 Consensus size: 200
45409776 TTTTAATTGC
* *
45409786 AAGATTCGCCGTTGCGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTTCCCGTCGT
1 AAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTTCCCGTCGT
45409851 AGCTTCAATCAATTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTT
66 AGCTTCAATCAATTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTT
* * * *
45409916 AATTGCAATTTTGGGGAAATAAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCAGG
131 AATTGCAATGTTGGGGAAACAAGATTCACCATCGTACCTTCAATCTGTTCCACTACACCGCCAGG
45409981 GGAGT
196 GGAGT
45409986 AAG-TTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGA-TTCGCCGTCG
1 AAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTTC-CCGTCG
* *
45410049 TAGCTTCAATCTATTCCACTACATCGCCAGGGGAGTAAGA-TCGCCGTTGCGGCTTCAATCTTTT
65 TAGCTTCAATCAATTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGCGGCTTCAATCTTTT
*
45410113 TAATTGTAATGTTGGGGAAACAAGATTCACCATCGTACCTTCAATCTGTTCCACTACACCGCCAG
130 TAATTGCAATGTTGGGGAAACAAGATTCACCATCGTACCTTCAATCTGTTCCACTACACCGCCAG
45410178 GGGAGT
195 GGGAGT
* *
45410184 AAGATTCACCGTTGTGGTTTCAATCT
1 AAGATTCGCCGTTGTGGCTTCAATCT
45410210 GCGCCACTGT
Statistics
Matches: 211, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
198 96 0.45
199 112 0.53
200 3 0.01
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.31
Consensus pattern (200 bp):
AAGATTCGCCGTTGTGGCTTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTTCCCGTCGT
AGCTTCAATCAATTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGCGGCTTCAATCTTTTT
AATTGCAATGTTGGGGAAACAAGATTCACCATCGTACCTTCAATCTGTTCCACTACACCGCCAGG
GGAGT
Found at i:45410210 original size:50 final size:50
Alignment explanation
Indices: 45409852--45410210 Score: 188
Period size: 50 Copynumber: 7.2 Consensus size: 50
45409842 TCCCGTCGTA
** *
45409852 GCTTCAATCAATTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGCG
1 GCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGTG
* ** * * ***** * * * *
45409902 GCTTCAATCTTTTTAATTGCA-ATTTTGGGGAAATAAGATTCACCGTCGTA
1 GCTTCAATCTGTTCCACTACACCGCCAGGGG-AGTAAGATTCGCCGTTGTG
45409952 GCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAG-TTCGCCGTTGTG
1 GCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGTG
* ** * * ** ** ** * *
45410001 GCTTCAATCTTTTTAATTGCAATG-TTGGGGAAACAAGATTCGCCGTCGTA
1 GCTTCAATCTGTTCCACTACACCGCCAGGGG-AGTAAGATTCGCCGTTGTG
* * *
45410051 GCTTCAATCTATTCCACTACATCGCCAGGGGAGTAAGA-TCGCCGTTGCG
1 GCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGTG
* ** * ** ** ** ** * * * *
45410100 GCTTCAATCTTTTTAATTGTAATG-TTGGGGAAACAAGATTCACCATCGTA
1 GCTTCAATCTGTTCCACTACACCGCCAGGGG-AGTAAGATTCGCCGTTGTG
* *
45410150 CCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCACCGTTGTG
1 GCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGTG
*
45410200 GTTTCAATCTG
1 GCTTCAATCTG
45410211 CGCCACTGTA
Statistics
Matches: 209, Mismatches: 92, Indels: 16
0.66 0.29 0.05
Matches are distributed among these distances:
48 8 0.04
49 63 0.30
50 126 0.60
51 12 0.06
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (50 bp):
GCTTCAATCTGTTCCACTACACCGCCAGGGGAGTAAGATTCGCCGTTGTG
Found at i:45410383 original size:117 final size:117
Alignment explanation
Indices: 45410172--45410460 Score: 357
Period size: 117 Copynumber: 2.5 Consensus size: 117
45410162 TCCACTACAC
* * ** *
45410172 CGCCAGGG-GAGTAAGATTCACCGTTGTGGTTTCAATCTGCGCCACTGTAATGCCAAAGAGATAG
1 CGCCAGGGAGA-TAAGATTCACCGTTGTGGCTTCAATCTGCTCTGCTATAATGCCAAAGAGATAG
* *
45410236 GACTCACTGCCCATAGCTTCAATCTGCTCCACTTCAACTAATCCAAGCCTTAA
65 GACTCACTGCCCACAGCTTCAATCTACTCCACTTCAACTAATCCAAGCCTTAA
* * * * *
45410289 TGTCAGGGAGATACGATTCACCATCGTGGCTTCAATCTGCTCTGCTATAATGCCAAAGAGATAGG
1 CGCCAGGGAGATAAGATTCACCGTTGTGGCTTCAATCTGCTCTGCTATAATGCCAAAGAGATAGG
* * * *
45410354 ATTCACTGCCCACAGCTTCAAT-TCACTCCACTTCAGCTAATCCATGTCTTAA
66 ACTCACTGCCCACAGCTTCAATCT-ACTCCACTTCAACTAATCCAAGCCTTAA
* * * * *
45410406 CGCCAAGGAGATAAGATTCGCTGTTGTGGCTTCAATCTGCTCTGTTACAATGCCA
1 CGCCAGGGAGATAAGATTCACCGTTGTGGCTTCAATCTGCTCTGCTATAATGCCA
45410461 GGGAAATAAG
Statistics
Matches: 144, Mismatches: 26, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
116 1 0.01
117 141 0.98
118 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (117 bp):
CGCCAGGGAGATAAGATTCACCGTTGTGGCTTCAATCTGCTCTGCTATAATGCCAAAGAGATAGG
ACTCACTGCCCACAGCTTCAATCTACTCCACTTCAACTAATCCAAGCCTTAA
Found at i:45417101 original size:20 final size:21
Alignment explanation
Indices: 45417050--45417102 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
45417040 GAAAATAAAG
45417050 AAAAATATATAAATATATATGT
1 AAAAATATA-AAATATATATGT
* * *
45417072 ATAAATTATAAAATATGTGT-T
1 A-AAAATATAAAATATATATGT
45417093 AAAAATATAA
1 AAAAATATAA
45417103 GTATGTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
20 8 0.31
21 2 0.08
22 9 0.35
23 7 0.27
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (21 bp):
AAAAATATAAAATATATATGT
Found at i:45417227 original size:30 final size:33
Alignment explanation
Indices: 45417192--45417257 Score: 84
Period size: 30 Copynumber: 2.1 Consensus size: 33
45417182 AATATATGAA
*
45417192 TATATACATGTACATAT-A-TA-AAAAAATAAT
1 TATATACATATACATATAATTATAAAAAATAAT
*
45417222 TATATACATATATATATAGATTATAAAAAATAAT
1 TATATACATATACATATA-ATTATAAAAAATAAT
45417256 TA
1 TA
45417258 CATATATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 15 0.50
32 1 0.03
33 2 0.07
34 12 0.40
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (33 bp):
TATATACATATACATATAATTATAAAAAATAAT
Found at i:45424290 original size:29 final size:31
Alignment explanation
Indices: 45424246--45424307 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 31
45424236 TGAAATATTT
*
45424246 TTAAAAATTTGGATG-CTCTTTTTGTAAATA
1 TTAAAAATTTAGATGCCTCTTTTTGTAAATA
45424276 TTAAAAA-TTAGATGCCTCTTTTTGTAAATA
1 TTAAAAATTTAGATGCCTCTTTTTGTAAATA
45424306 TT
1 TT
45424308 TTCAAAAAGA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (31 bp):
TTAAAAATTTAGATGCCTCTTTTTGTAAATA
Found at i:45424996 original size:25 final size:25
Alignment explanation
Indices: 45424936--45424996 Score: 61
Period size: 25 Copynumber: 2.4 Consensus size: 25
45424926 CTCCTAAATT
*
45424936 TTAATTTAATTATCTAAATTTTCAA
1 TTAATTAAATTATCTAAATTTTCAA
* * **
45424961 TTTATTGAATTAT-TAATATTTTGTA
1 TTAATTAAATTATCTAA-ATTTTCAA
45424986 TTAATTAAATT
1 TTAATTAAATT
45424997 TTTGAGACAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
24 3 0.10
25 26 0.90
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (25 bp):
TTAATTAAATTATCTAAATTTTCAA
Found at i:45430330 original size:26 final size:26
Alignment explanation
Indices: 45430301--45430356 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
45430291 TGGAGGAAGT
45430301 ATACTGTTACTGGCAGCCTTGCTGCG
1 ATACTGTTACTGGCAGCCTTGCTGCG
*
45430327 ATACTGTTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGCCTTGCTGCG
45430353 ATAC
1 ATAC
45430357 GGTGTGTTGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (26 bp):
ATACTGTTACTGGCAGCCTTGCTGCG
Found at i:45438042 original size:49 final size:49
Alignment explanation
Indices: 45437966--45438060 Score: 145
Period size: 49 Copynumber: 1.9 Consensus size: 49
45437956 CATATAGAAG
* *
45437966 TACACTTCTTCTATTTAATATTAATTAGAATAAGGTGTTTCAACCTTAC
1 TACACTGCTTCTATTTAACATTAATTAGAATAAGGTGTTTCAACCTTAC
* * *
45438015 TACACTGCTTCTATTTGACATTGATTAGAATAAGGTTTTTCAACCT
1 TACACTGCTTCTATTTAACATTAATTAGAATAAGGTGTTTCAACCT
45438061 ATAAATAGAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.42
Consensus pattern (49 bp):
TACACTGCTTCTATTTAACATTAATTAGAATAAGGTGTTTCAACCTTAC
Found at i:45440393 original size:32 final size:32
Alignment explanation
Indices: 45440357--45440431 Score: 84
Period size: 32 Copynumber: 2.3 Consensus size: 32
45440347 AAAACAACTG
45440357 ATAAAACAATAACA-ATAAAGT-T-AAAAATAAAA
1 ATAAAACAA-AACATAT-AAGTATGAAAAAT-AAA
*
45440389 ATAAAATAAAACATATAAGTATGAAAAATAAA
1 ATAAAACAAAACATATAAGTATGAAAAATAAA
45440421 ATAAATACAAA
1 ATAAA-ACAAA
45440432 TAAGAAGAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
31 8 0.22
32 19 0.51
33 10 0.27
ACGTcount: A:0.71, C:0.05, G:0.04, T:0.20
Consensus pattern (32 bp):
ATAAAACAAAACATATAAGTATGAAAAATAAA
Found at i:45440415 original size:27 final size:27
Alignment explanation
Indices: 45440385--45440448 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
45440375 AGTTAAAAAT
* *
45440385 AAAAATAAAATAAA-ACATATAAGTATG
1 AAAAATAAAATAAATACAAATAAG-AAG
45440412 AAAAATAAAATAAATACAAATAAGAAG
1 AAAAATAAAATAAATACAAATAAGAAG
*
45440439 AAAAAGAAAA
1 AAAAATAAAA
45440449 AGAAAACTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 25 0.76
28 8 0.24
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.16
Consensus pattern (27 bp):
AAAAATAAAATAAATACAAATAAGAAG
Found at i:45440435 original size:28 final size:26
Alignment explanation
Indices: 45440385--45440462 Score: 84
Period size: 27 Copynumber: 2.8 Consensus size: 26
45440375 AGTTAAAAAT
* *
45440385 AAAAATAAAATAAAACATATAAGTATG
1 AAAAATAAAATAAAACAAATAAG-AAG
45440412 AAAAATAAAATAAATACAAATAAGAAG
1 AAAAATAAAATAAA-ACAAATAAGAAG
* *
45440439 AAAAAGAAAAAGAAAACTAAATAA
1 AAAAA-TAAAATAAAAC-AAATAA
45440463 AATCTAAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
27 23 0.52
28 21 0.48
ACGTcount: A:0.73, C:0.04, G:0.08, T:0.15
Consensus pattern (26 bp):
AAAAATAAAATAAAACAAATAAGAAG
Found at i:45449109 original size:22 final size:22
Alignment explanation
Indices: 45449081--45449125 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
45449071 TGTAACAAGA
45449081 ATGAGCCATTAGCTTAATGGTT
1 ATGAGCCATTAGCTTAATGGTT
*
45449103 ATGAGCCGTTAGCTTAATGGTT
1 ATGAGCCATTAGCTTAATGGTT
45449125 A
1 A
45449126 AAAAGGAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (22 bp):
ATGAGCCATTAGCTTAATGGTT
Found at i:45456306 original size:11 final size:12
Alignment explanation
Indices: 45456290--45456325 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
45456280 ATTGTTAAAA
45456290 TAATTA-AAATT
1 TAATTATAAATT
45456301 TAATTATAAA-T
1 TAATTATAAATT
45456312 TAA-TATAAATT
1 TAATTATAAATT
45456323 TAA
1 TAA
45456326 CAATTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
10 6 0.26
11 14 0.61
12 3 0.13
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATTATAAATT
Found at i:45460273 original size:110 final size:108
Alignment explanation
Indices: 45460071--45460815 Score: 870
Period size: 110 Copynumber: 6.7 Consensus size: 108
45460061 CTAACCATAT
* * * *
45460071 TGGCATGATATGCCTGTATTTATATTCATGGTGTAACCTTCGATTCAATAATGTATGAATCAAAA
1 TGGCATGATATG-TTTTATTTATATTCATGGTGTAGCCTTCG-----ATAGTGTATGAATCAAAA
45460136 TG-TCAGATCACGATACATGAATGTGTGTAAGACCATGGGATTAAGACCCA
60 TGAT-AGATCACGATACATGAATGTGTGTAAGACCATGGG-TTAAGACCCA
*
45460186 TGGCATGATATGTCTTTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCGAAATGATA
1 TGGCATGATATGT-TTTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATGATA
* *
45460251 GATCACGATACATGAATGTGTGTAAGACCATGTGTTTAAAACCCA
65 GATCACGATACATGAATGTGTGTAAGACCATG-GGTTAAGACCCA
* * *
45460296 TGTCATGATATGTTTGTTTTTATATTTATGGTGTAGCCTTCGATAGTGTATGAATCAAAAT-AGT
1 TGGCATGATATGTTT-TATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATGA-T
* * *
45460360 AGATCACAATACATGAATGTGTGTAAGACCATGTGTTTAAGAGCCA
64 AGATCACGATACATGAATGTGTGTAAGACCATG-GGTTAAGACCCA
* * * * *
45460406 TAGCATCATATGTTCATATTTATATTCATGGTGTAGCCTTTGGTAGTGTATGAATCAAAATGGA-
1 TGGCATGATATGTT-TTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAAT-GAT
* * * *
45460470 AGATCACGATAAATGAATGTGTGCAACACCATGTGGTTGAGACCCA
64 AGATCACGATACATGAATGTGTGTAAGACCATG-GGTTAAGACCCA
* *
45460516 TGGCATGATATGTTTGTACTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAA-CAGT
1 TGGCATGATATGTTT-TATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATGA-T
* ** * *
45460580 AGATCATGATACATGAATGCATGTAAGACCATGTGGTTAAGAACTA
64 AGATCACGATACATGAATGTGTGTAAGACCATG-GGTTAAGACCCA
* * * *
45460626 TAGCATGATATGCTTGTATTTATATTCATGGTGTAGCCTTTGATAGTGTATGAATCGAAATAGA-
1 TGGCATGATATG-TTTTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAAT-GAT
* *
45460690 AGATCACGATAAATGAATGTGTGTAAGACCATATGGTTAAGACCCA
64 AGATCACGATACATGAATGTGTGTAAGACCAT-GGGTTAAGACCCA
*** * ** *
45460736 TGGCATGATATGTTTGGCTTATATTCATGGTGTAGCCTTCGATATTGTATGAATTGAAATGAAAG
1 TGGCATGATATGTTTTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATGATAG
*
45460801 ATTACGATACATGAA
66 ATCACGATACATGAA
45460816 ATTATGTATC
Statistics
Matches: 546, Mismatches: 68, Indels: 38
0.84 0.10 0.06
Matches are distributed among these distances:
108 3 0.01
109 59 0.11
110 440 0.81
111 4 0.01
112 2 0.00
115 38 0.07
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (108 bp):
TGGCATGATATGTTTTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATGATAG
ATCACGATACATGAATGTGTGTAAGACCATGGGTTAAGACCCA
Found at i:45460461 original size:220 final size:220
Alignment explanation
Indices: 45460071--45460815 Score: 989
Period size: 220 Copynumber: 3.4 Consensus size: 220
45460061 CTAACCATAT
** * * *
45460071 TGGCATGATATGCCTGTATTTATATTCATGGTGTAACCTTCGATTCAATAATGTATGAATCAAAA
1 TGGCATGATATGTTTGTACTTATATTCATGGTGTAGCCTTCG-----ATAGTGTATGAATCAAAA
* * *
45460136 T-GTCAGATCACGATACATGAATGTGTGTAAGACCATGGGATTAAGACCCATGGCATGATATG-T
61 TAGT-AGATCACGATACATGAATGTGTGTAAGACCATGTGATTAAGAACCATAGCATGATATGTT
* * *
45460199 CTTTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCGAAAT-GATAGATCACGATACA
125 C-ATATTTATATTCATGGTGTAGCCTTTGATAGTGTATGAATCGAAATAGA-AGATCACGATAAA
* *
45460263 TGAATGTGTGTAAGACCATGTGTTTAAAACCCA
188 TGAATGTGTGTAAGACCATGTGGTTAAGACCCA
* ** *
45460296 TGTCATGATATGTTTGTTTTTATATTTATGGTGTAGCCTTCGATAGTGTATGAATCAAAATAGTA
1 TGGCATGATATGTTTGTACTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATAGTA
* * * *
45460361 GATCACAATACATGAATGTGTGTAAGACCATGTGTTTAAGAGCCATAGCATCATATGTTCATATT
66 GATCACGATACATGAATGTGTGTAAGACCATGTGATTAAGAACCATAGCATGATATGTTCATATT
* * *
45460426 TATATTCATGGTGTAGCCTTTGGTAGTGTATGAATCAAAATGGAAGATCACGATAAATGAATGTG
131 TATATTCATGGTGTAGCCTTTGATAGTGTATGAATCGAAATAGAAGATCACGATAAATGAATGTG
* * *
45460491 TGCAACACCATGTGGTTGAGACCCA
196 TGTAAGACCATGTGGTTAAGACCCA
*
45460516 TGGCATGATATGTTTGTACTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAACAGTA
1 TGGCATGATATGTTTGTACTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATAGTA
* ** * * *
45460581 GATCATGATACATGAATGCATGTAAGACCATGTGGTTAAGAACTATAGCATGATATGCTT-GTAT
66 GATCACGATACATGAATGTGTGTAAGACCATGTGATTAAGAACCATAGCATGATATG-TTCATAT
45460645 TTATATTCATGGTGTAGCCTTTGATAGTGTATGAATCGAAATAGAAGATCACGATAAATGAATGT
130 TTATATTCATGGTGTAGCCTTTGATAGTGTATGAATCGAAATAGAAGATCACGATAAATGAATGT
*
45460710 GTGTAAGACCATATGGTTAAGACCCA
195 GTGTAAGACCATGTGGTTAAGACCCA
* * ** *
45460736 TGGCATGATATGTTTG-GCTTATATTCATGGTGTAGCCTTCGATATTGTATGAATTGAAAT-GAA
1 TGGCATGATATGTTTGTACTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATAG-T
*
45460799 AGATTACGATACATGAA
65 AGATCACGATACATGAA
45460816 ATTATGTATC
Statistics
Matches: 463, Mismatches: 52, Indels: 16
0.87 0.10 0.03
Matches are distributed among these distances:
218 1 0.00
219 54 0.12
220 364 0.79
221 8 0.02
225 36 0.08
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (220 bp):
TGGCATGATATGTTTGTACTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATAGTA
GATCACGATACATGAATGTGTGTAAGACCATGTGATTAAGAACCATAGCATGATATGTTCATATT
TATATTCATGGTGTAGCCTTTGATAGTGTATGAATCGAAATAGAAGATCACGATAAATGAATGTG
TGTAAGACCATGTGGTTAAGACCCA
Found at i:45460749 original size:330 final size:329
Alignment explanation
Indices: 45460090--45460815 Score: 960
Period size: 330 Copynumber: 2.2 Consensus size: 329
45460080 ATGCCTGTAT
* * **
45460090 TTATATTCATGGTGTAACCTTCGATTCAATAATGTATGAATCAAAATGTCAGATCACGATACATG
1 TTATATTCATGGTGTAGCCTTCG-----ATAGTGTATGAATCAAAATGAAAGATCACGATACATG
* * *
45460155 AATGTGTGTAAGACCATGGGATTAAGACCCATGGCATGATATGTCTTTATTTATATTCATGGTGT
61 AATGTGTGCAACACCATGGGATTAAGACCCATGGCATGATATGTCTTTACTTATATTCATGGTGT
* * **
45460220 AGCCTTCGATAGTGTATGAATCGAAATGATAGATCACGATACATGAATGTGTGTAAGACCATGTG
126 AGCCTTCGATAGTGTATGAATCAAAAAGATAGATCACGATACATGAATGCATGTAAGACCATGTG
* * * *
45460285 TTTAAAACCCATGTCATGATATGTTTGTTTTTATATTTATGGTGTAGCCTTCGATAGTGTATGAA
191 GTTAAAACCCATGTCATGATATGCTTGTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAA
* * * * *
45460350 TCAAAATAGTAGATCACAATACATGAATGTGTGTAAGACCATGTGTTTAAGAGCCATAGCATCAT
256 TCAAAATAGAAGATCACAATAAATGAATGTGTGTAAGACCATATGGTTAAGACCCATAGCATCAT
*
45460415 ATGTTCAT-AT
321 ATGTT--TGAC
* * * *
45460425 TTATATTCATGGTGTAGCCTTTGGTAGTGTATGAATCAAAATGGAAGATCACGATAAATGAATGT
1 TTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATGAAAGATCACGATACATGAATGT
*
45460490 GTGCAACACCATGTGG-TTGAGACCCATGGCATGATATGT-TTGTACTTATATTCATGGTGTAGC
66 GTGCAACACCATG-GGATTAAGACCCATGGCATGATATGTCTT-TACTTATATTCATGGTGTAGC
*
45460553 CTTCGATAGTGTATGAATCAAAACAG-TAGATCATGATACATGAATGCATGTAAGACCATGTGGT
129 CTTCGATAGTGTATGAATCAAAA-AGATAGATCACGATACATGAATGCATGTAAGACCATGTGGT
* *
45460617 TAAGAA-CTATAG-CATGATATGCTTGTATTTATATTCATGGTGTAGCCTTTGATAGTGTATGAA
193 TAA-AACCCAT-GTCATGATATGCTTGTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAA
* * * *
45460680 TCGAAATAGAAGATCACGATAAATGAATGTGTGTAAGACCATATGGTTAAGACCCATGGCATGAT
256 TCAAAATAGAAGATCACAATAAATGAATGTGTGTAAGACCATATGGTTAAGACCCATAGCATCAT
*
45460745 ATGTTTGGC
321 ATGTTTGAC
* ** *
45460754 TTATATTCATGGTGTAGCCTTCGATATTGTATGAATTGAAATGAAAGATTACGATACATGAA
1 TTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATGAAAGATCACGATACATGAA
45460816 ATTATGTATC
Statistics
Matches: 344, Mismatches: 41, Indels: 18
0.85 0.10 0.04
Matches are distributed among these distances:
328 1 0.00
329 56 0.16
330 260 0.76
331 6 0.02
335 21 0.06
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (329 bp):
TTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAAATGAAAGATCACGATACATGAATGT
GTGCAACACCATGGGATTAAGACCCATGGCATGATATGTCTTTACTTATATTCATGGTGTAGCCT
TCGATAGTGTATGAATCAAAAAGATAGATCACGATACATGAATGCATGTAAGACCATGTGGTTAA
AACCCATGTCATGATATGCTTGTATTTATATTCATGGTGTAGCCTTCGATAGTGTATGAATCAAA
ATAGAAGATCACAATAAATGAATGTGTGTAAGACCATATGGTTAAGACCCATAGCATCATATGTT
TGAC
Found at i:45466929 original size:16 final size:16
Alignment explanation
Indices: 45466892--45466922 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45466882 CGACCGTTAG
*
45466892 CTAAAACATGGTTTTA
1 CTAAAACAAGGTTTTA
45466908 CTAAAACAAGGTTTT
1 CTAAAACAAGGTTTT
45466923 CTGAAAATGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (16 bp):
CTAAAACAAGGTTTTA
Found at i:45481583 original size:3 final size:3
Alignment explanation
Indices: 45481575--45481603 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
45481565 TTCTTTGTCT
45481575 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
45481604 TTTATTTAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:45489508 original size:14 final size:14
Alignment explanation
Indices: 45489489--45489527 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
45489479 CACATTTTAA
*
45489489 TAATTTCTTTGTCC
1 TAATTTCTATGTCC
45489503 TAATTTCTATGTCC
1 TAATTTCTATGTCC
45489517 TAATTTC-ATGT
1 TAATTTCTATGT
45489528 TTCTGCATAT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 4 0.17
14 20 0.83
ACGTcount: A:0.21, C:0.18, G:0.08, T:0.54
Consensus pattern (14 bp):
TAATTTCTATGTCC
Found at i:45496548 original size:46 final size:46
Alignment explanation
Indices: 45496495--45496631 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
45496485 TATATATACA
* * * *
45496495 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
45496541 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
45496587 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
45496632 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:45496666 original size:47 final size:47
Alignment explanation
Indices: 45496605--45496748 Score: 225
Period size: 47 Copynumber: 3.1 Consensus size: 47
45496595 ACACATTTCG
*
45496605 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* *
45496652 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
* * **
45496699 CATTTGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
45496746 CAT
1 CAT
45496749 AAAATCCTAA
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 89 1.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CATTAGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCA
Found at i:45496749 original size:25 final size:25
Alignment explanation
Indices: 45496670--45496749 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
45496660 ATTCGGCCTT
**
45496670 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* *
45496695 ATCACAT-T-TGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
* *
45496717 ATCTCATATATACACATTCACATTC
1 ATCACATATATGCACATTCACATTC
45496742 ATCACATA
1 ATCACATA
45496750 AAATCCTAAA
Statistics
Matches: 41, Mismatches: 9, Indels: 10
0.68 0.15 0.17
Matches are distributed among these distances:
22 9 0.22
23 7 0.17
24 6 0.15
25 19 0.46
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:45503023 original size:26 final size:26
Alignment explanation
Indices: 45502976--45503025 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
45502966 AACCGGCCAT
45502976 AAGGAAAAAAAAAAGAAGAAAACAAA
1 AAGGAAAAAAAAAAGAAGAAAACAAA
*
45503002 AAGGAAAAAATAAAA-AATAAAACA
1 AAGGAAAAAA-AAAAGAAGAAAACA
45503026 CCCAAATCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.80, C:0.04, G:0.12, T:0.04
Consensus pattern (26 bp):
AAGGAAAAAAAAAAGAAGAAAACAAA
Found at i:45504829 original size:28 final size:28
Alignment explanation
Indices: 45504797--45504850 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
45504787 TTTGAAGTCG
45504797 ATTTCTCATCCTTAACATATGCATATCA
1 ATTTCTCATCCTTAACATATGCATATCA
*
45504825 ATTTCTCATCCTTAACATGTGCATAT
1 ATTTCTCATCCTTAACATATGCATAT
45504851 AGTATGGATA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.30, C:0.24, G:0.06, T:0.41
Consensus pattern (28 bp):
ATTTCTCATCCTTAACATATGCATATCA
Found at i:45505481 original size:4 final size:4
Alignment explanation
Indices: 45505472--45505524 Score: 54
Period size: 4 Copynumber: 13.2 Consensus size: 4
45505462 TTGCTTGTAC
* * * *
45505472 ATAA ATAA ATAA ATAAA ATAA A-AA ACAA ATAA ATAA GTAA TTAA GTAA
1 ATAA ATAA ATAA AT-AA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA
45505520 ATAA A
1 ATAA A
45505525 GACTCAAGTT
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
3 3 0.07
4 35 0.83
5 4 0.10
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.23
Consensus pattern (4 bp):
ATAA
Found at i:45511090 original size:37 final size:37
Alignment explanation
Indices: 45511037--45511111 Score: 116
Period size: 37 Copynumber: 2.0 Consensus size: 37
45511027 TTCACATAGC
*
45511037 CCCTTTCCTCGAACTTGGAAGGCTCAAGCTTGTCTTT
1 CCCTTTCCTCGAACTTGGAAGACTCAAGCTTGTCTTT
*
45511074 CCCTTTCCTC-AGACTTGGAAGATTCAAGCTTGTCTTT
1 CCCTTTCCTCGA-ACTTGGAAGACTCAAGCTTGTCTTT
45511111 C
1 C
45511112 TCTAGATCAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 1 0.03
37 34 0.97
ACGTcount: A:0.17, C:0.29, G:0.17, T:0.36
Consensus pattern (37 bp):
CCCTTTCCTCGAACTTGGAAGACTCAAGCTTGTCTTT
Found at i:45513825 original size:14 final size:14
Alignment explanation
Indices: 45513802--45513832 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
45513792 AGTACTTAGT
45513802 CTATTATTTCACTG
1 CTATTATTTCACTG
*
45513816 CTATTGTTTCACTG
1 CTATTATTTCACTG
45513830 CTA
1 CTA
45513833 GCATTAGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.19, C:0.23, G:0.10, T:0.48
Consensus pattern (14 bp):
CTATTATTTCACTG
Found at i:45516716 original size:7 final size:8
Alignment explanation
Indices: 45516688--45516714 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
45516678 ATTTTACTCG
45516688 AAAATATA
1 AAAATATA
45516696 AAAATATA
1 AAAATATA
45516704 AAAATATA
1 AAAATATA
45516712 AAA
1 AAA
45516715 TAGTATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (8 bp):
AAAATATA
Found at i:45520316 original size:9 final size:9
Alignment explanation
Indices: 45520302--45520341 Score: 71
Period size: 9 Copynumber: 4.4 Consensus size: 9
45520292 ATAAGCTTAA
45520302 CACACATAT
1 CACACATAT
45520311 CACACATAT
1 CACACATAT
45520320 CACACATAT
1 CACACATAT
*
45520329 CACACATGT
1 CACACATAT
45520338 CACA
1 CACA
45520342 ATTTCACGTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.42, C:0.35, G:0.03, T:0.20
Consensus pattern (9 bp):
CACACATAT
Found at i:45522049 original size:7 final size:8
Alignment explanation
Indices: 45522021--45522047 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
45522011 ATTTTACTCG
45522021 AAAATATA
1 AAAATATA
45522029 AAAATATA
1 AAAATATA
45522037 AAAATATA
1 AAAATATA
45522045 AAA
1 AAA
45522048 TAGTATATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (8 bp):
AAAATATA
Found at i:45529922 original size:19 final size:18
Alignment explanation
Indices: 45529887--45529922 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
45529877 GAAGTAAGCA
*
45529887 ATGATTGAAGAAATCAGG
1 ATGATTGAAAAAATCAGG
45529905 ATGATTGAAAATAATCAG
1 ATGATTGAAAA-AATCAG
45529923 ACCTGGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.06, G:0.22, T:0.25
Consensus pattern (18 bp):
ATGATTGAAAAAATCAGG
Found at i:45536212 original size:23 final size:22
Alignment explanation
Indices: 45536197--45536271 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
45536187 TATATATATG
45536197 GAAAAACATGAGATATTATTAT
1 GAAAAACATGAGATATTATTAT
* * * * *
45536219 GAGAAACTTTGAAGCTA-AACATAT
1 GAAAAAC-ATG-AGATATTA-TTAT
45536243 AGAAAAACATGAGATATTATTAT
1 -GAAAAACATGAGATATTATTAT
45536266 GAAAAA
1 GAAAAA
45536272 TTTTGAAGCT
Statistics
Matches: 38, Mismatches: 10, Indels: 10
0.66 0.17 0.17
Matches are distributed among these distances:
22 12 0.32
23 10 0.26
24 10 0.26
25 6 0.16
ACGTcount: A:0.52, C:0.07, G:0.15, T:0.27
Consensus pattern (22 bp):
GAAAAACATGAGATATTATTAT
Found at i:45536261 original size:47 final size:47
Alignment explanation
Indices: 45536192--45536290 Score: 162
Period size: 47 Copynumber: 2.1 Consensus size: 47
45536182 AATTATATAT
* *
45536192 ATATGGAAAAACATGAGATATTATTATGAGAAACTTTGAAGCTAAAC
1 ATATAGAAAAACATGAGATATTATTATGAAAAACTTTGAAGCTAAAC
*
45536239 ATATAGAAAAACATGAGATATTATTATGAAAAATTTTGAAGCTAAAC
1 ATATAGAAAAACATGAGATATTATTATGAAAAACTTTGAAGCTAAAC
*
45536286 TTATA
1 ATATA
45536291 TTTTTACACA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.48, C:0.07, G:0.14, T:0.30
Consensus pattern (47 bp):
ATATAGAAAAACATGAGATATTATTATGAAAAACTTTGAAGCTAAAC
Found at i:45537873 original size:50 final size:50
Alignment explanation
Indices: 45537804--45538466 Score: 456
Period size: 50 Copynumber: 13.3 Consensus size: 50
45537794 TAACTCGTAA
*
45537804 CTTTAATCTGTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
** * ** ** * * * * * *
45537854 CGCTAATCTGTCCCGCTGCACCG-CTTGAGAAGTAAGATTCGCTGTTGTAG
1 CTTTAATCTGTTCAACTGCAATGTC-GGGGAAGCAAGATTCACCGTTGTGG
* * * * * *
45537904 CTTTAATCTTTTTAACTGCAATGTCAGGAAAGCAAGATTCACTGATGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
* ** * * * * *
45537954 CTTTAATCTGTTCTACTGC-ATCACTTGAGAAGTAAGATTCGCCGTTGTAG
1 CTTTAATCTGTTCAACTGCAATGTC-GGGGAAGCAAGATTCACCGTTGTGG
* *
45538004 CTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
* ** * * * *
45538054 CTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTC-CCTGTTGTAG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACC-GTTGTGG
* * **
45538104 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCAATGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
* ** * * *** *
45538154 CTTTAATCTGTTCCACTGCACCGCTTGGGG-AGTAAGATTCGTTGTTGTAG
1 CTTTAATCTGTTCAACTGCAATG-TCGGGGAAGCAAGATTCACCGTTGTGG
* * * * * **
45538204 CTTTAATCTTTTTAACAGGAATGTCGGGGAAGCAAGATGCACCGAGGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
* * * * * *
45538254 CTTTAATCTGTTCCACTGC-ATCGCCTGGGG-AGTAAGATTCGCTGTTGTAG
1 CTTTAATCTGTTCAACTGCAAT-GTC-GGGGAAGCAAGATTCACCGTTGTGG
* * * * * * *
45538304 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCCAGATACACCGATATGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
* * ** * * * * ** * *
45538354 CTTTAATCTGTTCCACTGGACCGCCAGGGAAGTAGGATTTGCTGTTGTAG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
* * * *
45538404 CTTTAAGCTGTTTAACTGCAACGTCGGGGAAGCAAGATTCACCGATGTGG
1 CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
45538454 CTTTAATCTGTTC
1 CTTTAATCTGTTC
45538467 CACTACATCG
Statistics
Matches: 438, Mismatches: 163, Indels: 24
0.70 0.26 0.04
Matches are distributed among these distances:
49 16 0.04
50 405 0.92
51 17 0.04
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (50 bp):
CTTTAATCTGTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGG
Found at i:45537981 original size:100 final size:100
Alignment explanation
Indices: 45537804--45538488 Score: 983
Period size: 100 Copynumber: 6.8 Consensus size: 100
45537794 TAACTCGTAA
* * ** * *
45537804 CTTTAATCTGTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCGCTAATCTGTCCCG
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* *
45537869 CTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
* * * *
45537904 CTTTAATCTTTTTAACTGCAATGTCAGGAAAGCAAGATTCACTGATGTGGCTTTAATCTGTTCTA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * * *
45537969 CTGCATCACTTGAGAAGTAAGATTCGCCGTTGTAG
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
*
45538004 CTTTAATCTTTTCAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* *
45538069 CTGCACCGCCAGGGAAGTAAGATTCCCTGTTGTAG
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
*
45538104 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * *
45538169 CTGCACCGCTTGGGGAGTAAGATTCGTTGTTGTAG
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
* * * *
45538204 CTTTAATCTTTTTAACAGGAATGTCGGGGAAGCAAGATGCACCGAGGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* *
45538269 CTGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAG
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
* * * *
45538304 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCCAGATACACCGATATGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* * * *
45538369 CTGGACCGCCAGGGAAGTAGGATTTGCTGTTGTAG
66 CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
* * *
45538404 CTTTAAGCTGTTTAACTGCAACGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
* *
45538469 CTACATCGCCTGGGAAGTAA
66 CTGCACCGCCTGGGAAGTAA
45538489 AATTGGTATT
Statistics
Matches: 520, Mismatches: 65, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 520 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.31
Consensus pattern (100 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCA
CTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAG
Found at i:45539802 original size:20 final size:19
Alignment explanation
Indices: 45539758--45539802 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
45539748 AGCCTCTCCA
* *
45539758 TTTTTACTTTTTCATTTTT
1 TTTTTAATTTTTCATTCTT
45539777 TATTTTAATTTTTCATCTCTT
1 T-TTTTAATTTTTCAT-TCTT
45539798 TTTTT
1 TTTTT
45539803 TTTGAATTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
19 1 0.05
20 17 0.77
21 4 0.18
ACGTcount: A:0.13, C:0.11, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTAATTTTTCATTCTT
Found at i:45540664 original size:6 final size:6
Alignment explanation
Indices: 45540655--45540694 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
45540645 TCTTCTTTTT
*
45540655 TTTTAA TTTTGA TTTTGA TTTTGA TTTTG- TTTTGGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT-GA TTTT
45540695 TTTTGGATCT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
5 4 0.13
6 23 0.74
7 4 0.13
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.70
Consensus pattern (6 bp):
TTTTGA
Found at i:45540673 original size:44 final size:44
Alignment explanation
Indices: 45540590--45540682 Score: 127
Period size: 44 Copynumber: 2.1 Consensus size: 44
45540580 TTTTTTTCCT
*
45540590 TTTTTCCTTATCTCTTTTTTCATTTCATTTTGACTTTGATTTTGA
1 TTTTTCCTTATCTCTTTTTT-ATTTAATTTTGACTTTGATTTTGA
*
45540635 TTTTTCTCTT-TCTTCTTTTTT-TTTAATTTTGATTTTGATTTTGA
1 TTTTTC-CTTATC-TCTTTTTTATTTAATTTTGACTTTGATTTTGA
45540679 TTTT
1 TTTT
45540683 GTTTTGGATT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
44 25 0.57
45 8 0.18
46 11 0.25
ACGTcount: A:0.12, C:0.12, G:0.06, T:0.70
Consensus pattern (44 bp):
TTTTTCCTTATCTCTTTTTTATTTAATTTTGACTTTGATTTTGA
Done.