Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 152 of 182
Found at i:46678150 original size:27 final size:27
Alignment explanation
Indices: 46677717--46678150 Score: 455
Period size: 27 Copynumber: 16.1 Consensus size: 27
46677707 GGGTATAATA
*
46677717 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
46677744 ATCATTTTACCCCATGGGGGTCATTTCG
1 GTCATTTTACCCTATGGGGGT-ATTTCG
* * *
46677772 GTCATTTCACCCTATCGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
46677799 ATCATTTTACCCTAT-GGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * ** *
46677825 ATCATTCTACCCTATAAGGGTATTT-T
1 GTCATTTTACCCTATGGGGGTATTTCG
*
46677851 GTCATTTTACCCTATGAGGGGTATTTTG
1 GTCATTTTACCCTATG-GGGGTATTTCG
* *
46677879 GTCATTTTATCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
46677906 GTCATTTTATCCTATGGGGTTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * **
46677933 ATCATTTTACCCTATGAGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
46677960 GTTATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
46677987 GTTATTCTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
46678014 GTC-TTTCTACCCTATGGGGGTA-TTCTG
1 GTCATTT-TACCCTATGGGGGTATTTC-G
* * * * *
46678041 ATAATTTTACCTTATAGAGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGGTATTTCG
** *
46678069 GTCATTTTACCCTATAAGTGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
46678096 GTCATTTTACCCTAT-AGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
46678122 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
46678149 GT
1 GT
46678151 GTATATATCG
Statistics
Matches: 345, Mismatches: 52, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
26 66 0.19
27 218 0.63
28 59 0.17
29 2 0.01
ACGTcount: A:0.19, C:0.17, G:0.21, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:46680359 original size:36 final size:36
Alignment explanation
Indices: 46680312--46680383 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
46680302 TTTTTAAAGG
46680312 GGGGTAAGGTAATATTTTCATAAATTGTAATTTCTT
1 GGGGTAAGGTAATATTTTCATAAATTGTAATTTCTT
46680348 GGGGTAAGGTAATATTTTCATAAATTGTAATTTCTT
1 GGGGTAAGGTAATATTTTCATAAATTGTAATTTCTT
46680384 TCTTAAGTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (36 bp):
GGGGTAAGGTAATATTTTCATAAATTGTAATTTCTT
Found at i:46695687 original size:187 final size:180
Alignment explanation
Indices: 46695376--46695794 Score: 594
Period size: 187 Copynumber: 2.3 Consensus size: 180
46695366 AACCACATGT
* *
46695376 TGTGTTTTGAAGAAGAAAAATGGTGTTTGACAAGAGAGAAAAT-A-AGAGAAAAAATGGCAGCTG
1 TGTGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGAGAGAAAAAATGGCAGCCG
* * * * * * * *
46695439 ATAGTGGGGGAAAATGATTTTAAGTTGAAAGTGTTGTATGGGTTTACAAAAATTGCACAAAAGCA
66 ACAATGGGGGAAAATAATTTTAAGCTAAAAGTGTGGCATGGGTTTACAAAAATTACACAAAAGCA
* *
46695504 TGATTATAATCATGGTGATGGAAATTCTTGTAGATGAAATTAGCCAACCA
131 TGATTATAATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCA
* *
46695554 TGTGTTTTGAAGAAGAAAAATGGTGCTTGGCAAGAGAGAAAATGAGAGAGAAAAAATGGTAGCCG
1 TGTGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGAGAGAAAAAATGGCAGCCG
*
46695619 ACAATGGAGGGAAAAAAACAATAATTTTAAGCTAAAAGTGTGGCGTGGGTTTACAAAAATTACAC
66 ACAATGG-GGG-----AA-AATAATTTTAAGCTAAAAGTGTGGCATGGGTTTACAAAAATTACAC
46695684 AAAAGCATGATTATAATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCA
124 AAAAGCATGATTATAATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCA
*
46695741 TATGTTTTGAAGAA-AAAAAGTGGTGTTTGGCAAGAGAGAAAATGAGAGA-AAAAA
1 TGTGTTTTGAAGAAGAAAAA-TGGTGTTTGGCAAGAGAGAAAATGAGAGAGAAAAA
46695795 TTTTGTTACA
Statistics
Matches: 214, Mismatches: 17, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
178 41 0.19
179 1 0.00
180 22 0.10
181 3 0.01
186 12 0.06
187 135 0.63
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (180 bp):
TGTGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGAGAGAAAAAATGGCAGCCG
ACAATGGGGGAAAATAATTTTAAGCTAAAAGTGTGGCATGGGTTTACAAAAATTACACAAAAGCA
TGATTATAATCATGGTAATGGAAATTCTTGTAGATGAAATGAGCCAACCA
Found at i:46702765 original size:16 final size:16
Alignment explanation
Indices: 46702740--46702777 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
46702730 ATGTTCTAGA
46702740 AACCCCACATGTTTTC
1 AACCCCACATGTTTTC
*
46702756 AACCCTACATGTTTTC
1 AACCCCACATGTTTTC
*
46702772 GACCCC
1 AACCCC
46702778 GTATGATTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.24, C:0.39, G:0.08, T:0.29
Consensus pattern (16 bp):
AACCCCACATGTTTTC
Found at i:46702806 original size:62 final size:62
Alignment explanation
Indices: 46702730--46702850 Score: 215
Period size: 62 Copynumber: 2.0 Consensus size: 62
46702720 AAGAGAACTC
* *
46702730 ATGTTCTAGAAACCCCACATGTTTTCAACCCTACATGTTTTCGACCCCGTATGATTCCACTT
1 ATGTTCTAGAAACCCAACATGTTTTCAACCCTACATGTTTTCGACCCCATATGATTCCACTT
*
46702792 ATGTTCTAGAAACCCAACATGTTTTCAACCCTACATGTTTTCGACCCTATATGATTCCA
1 ATGTTCTAGAAACCCAACATGTTTTCAACCCTACATGTTTTCGACCCCATATGATTCCA
46702851 TAATGCCAAT
Statistics
Matches: 56, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.26, C:0.29, G:0.11, T:0.34
Consensus pattern (62 bp):
ATGTTCTAGAAACCCAACATGTTTTCAACCCTACATGTTTTCGACCCCATATGATTCCACTT
Found at i:46702827 original size:16 final size:16
Alignment explanation
Indices: 46702802--46702840 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
46702792 ATGTTCTAGA
*
46702802 AACCCAACATGTTTTC
1 AACCCTACATGTTTTC
46702818 AACCCTACATGTTTTC
1 AACCCTACATGTTTTC
*
46702834 GACCCTA
1 AACCCTA
46702841 TATGATTCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.28, C:0.33, G:0.08, T:0.31
Consensus pattern (16 bp):
AACCCTACATGTTTTC
Found at i:46704425 original size:81 final size:81
Alignment explanation
Indices: 46704333--46704485 Score: 297
Period size: 81 Copynumber: 1.9 Consensus size: 81
46704323 TTTTTTTTCA
46704333 TTGATTTTTTTTCTTTTGTGTGCTTGAGCTTGTAAATATACAAGTGATTGGTTAGGAGCATGTAC
1 TTGATTTTTTTTCTTTTGTGTGCTTGAGCTTGTAAATATACAAGTGATTGGTTAGGAGCATGTAC
46704398 ATAGGTTGCTTGAAAG
66 ATAGGTTGCTTGAAAG
*
46704414 TTGATTTTTTTTCTTTTGTGTGCTTGAGCTTGTAGATATACAAGTGATTGGTTAGGAGCATGTAC
1 TTGATTTTTTTTCTTTTGTGTGCTTGAGCTTGTAAATATACAAGTGATTGGTTAGGAGCATGTAC
46704479 ATAGGTT
66 ATAGGTT
46704486 ACTTAAAAAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.22, C:0.08, G:0.25, T:0.44
Consensus pattern (81 bp):
TTGATTTTTTTTCTTTTGTGTGCTTGAGCTTGTAAATATACAAGTGATTGGTTAGGAGCATGTAC
ATAGGTTGCTTGAAAG
Found at i:46710250 original size:39 final size:40
Alignment explanation
Indices: 46710179--46710322 Score: 156
Period size: 39 Copynumber: 3.6 Consensus size: 40
46710169 ACTCCTCGTT
* *
46710179 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
*
46710219 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
46710258 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
46710299 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46710323 CATCATTCAA
Statistics
Matches: 90, Mismatches: 8, Indels: 13
0.81 0.07 0.12
Matches are distributed among these distances:
38 2 0.02
39 47 0.52
40 33 0.37
41 8 0.09
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:46718111 original size:79 final size:82
Alignment explanation
Indices: 46718000--46718184 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
46717990 GCTACTCGTT
* *
46718000 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
46718063 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
46718080 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
46718143 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
46718160 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
46718185 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:46718184 original size:40 final size:40
Alignment explanation
Indices: 46717981--46718184 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
46717971 CGGAATTTAA
** *
46717981 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46718021 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
46718061 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
46718100 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
46718140 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
46718180 CCGGA
1 CCGGA
46718185 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:46722273 original size:24 final size:24
Alignment explanation
Indices: 46722231--46722280 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
46722221 AATCAAAGTC
* * *
46722231 AAATATATTATGTTAATAAATGCT
1 AAATATATTATATGAATAAATACT
*
46722255 AAATATATTATATGCATAAATACT
1 AAATATATTATATGAATAAATACT
46722279 AA
1 AA
46722281 TTCTTCTAGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (24 bp):
AAATATATTATATGAATAAATACT
Found at i:46723505 original size:37 final size:37
Alignment explanation
Indices: 46723455--46723532 Score: 156
Period size: 37 Copynumber: 2.1 Consensus size: 37
46723445 CCATTATTTC
46723455 TTGATTGCTCTTTATAAATTGATTTGTTAAAATGATG
1 TTGATTGCTCTTTATAAATTGATTTGTTAAAATGATG
46723492 TTGATTGCTCTTTATAAATTGATTTGTTAAAATGATG
1 TTGATTGCTCTTTATAAATTGATTTGTTAAAATGATG
46723529 TTGA
1 TTGA
46723533 ATGATACTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 41 1.00
ACGTcount: A:0.29, C:0.05, G:0.17, T:0.49
Consensus pattern (37 bp):
TTGATTGCTCTTTATAAATTGATTTGTTAAAATGATG
Found at i:46735649 original size:16 final size:17
Alignment explanation
Indices: 46735628--46735659 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
46735618 CCCAATGAAA
46735628 GAAAGAGA-GAGAAGAC
1 GAAAGAGAGGAGAAGAC
46735644 GAAAGAGAGGAGAAGA
1 GAAAGAGAGGAGAAGA
46735660 ACTTGTGTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.56, C:0.03, G:0.41, T:0.00
Consensus pattern (17 bp):
GAAAGAGAGGAGAAGAC
Found at i:46747611 original size:5 final size:6
Alignment explanation
Indices: 46747576--46747610 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
46747566 ATTGCATATA
**
46747576 ATTTTT ATTTTT CCTTTT ATTTTT ATTTTT ATTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTT
46747611 AATCGTATTA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:46750999 original size:16 final size:17
Alignment explanation
Indices: 46750973--46751011 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
46750963 CTGAATATGA
* *
46750973 TGAGTATTGGAAGGCAC
1 TGAGAATTGGAAGCCAC
46750990 -GAGAATTGGAAGCCAC
1 TGAGAATTGGAAGCCAC
46751006 TGAGAA
1 TGAGAA
46751012 CCTGAACAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.36, C:0.13, G:0.33, T:0.18
Consensus pattern (17 bp):
TGAGAATTGGAAGCCAC
Found at i:46758923 original size:18 final size:19
Alignment explanation
Indices: 46758890--46758927 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
46758880 CAGGAAAAAC
46758890 GTCTTGAAACTCCTTAACT
1 GTCTTGAAACTCCTTAACT
*
46758909 GTCTTGATA-TCCTTAACT
1 GTCTTGAAACTCCTTAACT
46758927 G
1 G
46758928 AAGTGTCTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (19 bp):
GTCTTGAAACTCCTTAACT
Found at i:46762186 original size:17 final size:18
Alignment explanation
Indices: 46762152--46762186 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
46762142 CCATGATGTT
*
46762152 CGCCCGTGTGGGCCCACA
1 CGCCCGTGTGGACCCACA
46762170 CGCCCGTGT-GACCCACA
1 CGCCCGTGTGGACCCACA
46762187 TGACCCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.14, C:0.46, G:0.29, T:0.11
Consensus pattern (18 bp):
CGCCCGTGTGGACCCACA
Found at i:46764145 original size:23 final size:24
Alignment explanation
Indices: 46764104--46764151 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
46764094 TGCCAATACT
46764104 TGGAACCAAAGTTTATTCGGTAAA
1 TGGAACCAAAGTTTATTCGGTAAA
*
46764128 TGGAATCAAA-TTTATTCGGTAAA
1 TGGAACCAAAGTTTATTCGGTAAA
46764151 T
1 T
46764152 AATAGTTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (24 bp):
TGGAACCAAAGTTTATTCGGTAAA
Found at i:46764652 original size:39 final size:40
Alignment explanation
Indices: 46764557--46764779 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
46764547 TTGAATGTTG
*
46764557 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
46764595 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
46764636 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
46764675 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
46764714 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
46764753 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46764780 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:46764743 original size:79 final size:81
Alignment explanation
Indices: 46764557--46764779 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
46764547 TTGAATGTTG
* * *
46764557 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
46764619 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
46764636 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
46764697 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
46764714 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
46764778 TG
66 TG
46764780 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:46764801 original size:79 final size:79
Alignment explanation
Indices: 46764557--46764812 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
46764547 TTGAATGTTG
* * * *
46764557 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
46764618 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
46764636 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
46764700 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
46764714 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
46764777 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
46764794 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
46764813 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:46772635 original size:40 final size:40
Alignment explanation
Indices: 46772546--46772809 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
46772536 TTGAATGATG
* *
46772546 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAA-A
* * *
46772585 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
46772625 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46772664 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
46772704 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
46772744 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
46772785 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
46772810 AACGAGGAGC
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 53 0.26
40 143 0.69
41 10 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:46772827 original size:120 final size:118
Alignment explanation
Indices: 46772546--46772842 Score: 338
Period size: 119 Copynumber: 2.5 Consensus size: 118
46772536 TTGAATGATG
* *
46772546 TCCGGGCTAAGTCCCGAAGGC-TTGTG--CTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
1 TCCGGGCTAAGTCCCGAAGGCATT-TGAAC-GAGTGACTAA-ATCCGG-TTAA-ATCCCGAAGGC
* *
46772606 ATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
61 ATTTGTGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
* ** * *
46772664 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
* *
46772729 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
65 GTGCGAGATACTAAATCCGGGCTAAG-CCCGAAGGCATTTGTGCGAATTACTA-AA
* * *
46772785 -CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
46772843 TACGTGATTT
Statistics
Matches: 153, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
118 23 0.15
119 64 0.42
120 64 0.42
121 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGATACTAAATCCGGGCTAAGCCCGAAGGCATTTGTGCGAATTACTAAA
Found at i:46774210 original size:9 final size:9
Alignment explanation
Indices: 46774196--46774221 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
46774186 TAATTAAATG
46774196 ATTAGTAAA
1 ATTAGTAAA
46774205 ATTAGTAAA
1 ATTAGTAAA
46774214 ATTAGTAA
1 ATTAGTAA
46774222 TATGAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.12, T:0.35
Consensus pattern (9 bp):
ATTAGTAAA
Found at i:46774978 original size:23 final size:22
Alignment explanation
Indices: 46774944--46774986 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
46774934 AAACTATATT
46774944 TCATGTTTAATT-AGTTAAAAA
1 TCATGTTTAATTAAGTTAAAAA
46774965 TCATGTCTTAAATTAAGTTAAA
1 TCATGT-TT-AATTAAGTTAAA
46774987 TGTAATGCCT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 6 0.32
22 2 0.11
23 4 0.21
24 7 0.37
ACGTcount: A:0.42, C:0.07, G:0.09, T:0.42
Consensus pattern (22 bp):
TCATGTTTAATTAAGTTAAAAA
Found at i:46775466 original size:85 final size:84
Alignment explanation
Indices: 46775323--46775556 Score: 328
Period size: 85 Copynumber: 2.8 Consensus size: 84
46775313 ACCACCGCTG
* * * *
46775323 ATTTGTAGTTACTGCCACTTATTGTGGGTGCACAATATATTTGAAGATTAAACAAACTGTCACTT
1 ATTTGCAGTTACTGCCACTT-TTGTAGGTGCACAACATATTTGTAGATTAAACAAACTGTCACTT
46775388 GGCTCATGATCGAACCACAT
65 GGCTCATGATCGAACCACAT
*
46775408 ATTTGCAGTTATTGCCACTTGTTGTAGGTGCACAACATATTTGTAGATTAAACAAACTGTCACTT
1 ATTTGCAGTTACTGCCACTT-TTGTAGGTGCACAACATATTTGTAGATTAAACAAACTGTCACTT
*
46775473 GGTTCATGATCGAACCACAT
65 GGCTCATGATCGAACCACAT
* * * * **
46775493 ATTTGCAGTTACTGCTACTTATG-A-GTGCACATCATATTTGTAGATTAAATAAACTACCACTTG
1 ATTTGCAGTTACTGCCACTTTTGTAGGTGCACAACATATTTGTAGATTAAACAAACTGTCACTTG
46775556 G
66 G
46775557 TTCGTAATTG
Statistics
Matches: 135, Mismatches: 14, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
82 36 0.27
83 1 0.01
84 2 0.01
85 96 0.71
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.34
Consensus pattern (84 bp):
ATTTGCAGTTACTGCCACTTTTGTAGGTGCACAACATATTTGTAGATTAAACAAACTGTCACTTG
GCTCATGATCGAACCACAT
Found at i:46775600 original size:48 final size:48
Alignment explanation
Indices: 46775529--46775637 Score: 218
Period size: 48 Copynumber: 2.3 Consensus size: 48
46775519 GCACATCATA
46775529 TTTGTAGATTAAATAAACTACCACTTGGTTCGTAATTGAACCACACTG
1 TTTGTAGATTAAATAAACTACCACTTGGTTCGTAATTGAACCACACTG
46775577 TTTGTAGATTAAATAAACTACCACTTGGTTCGTAATTGAACCACACTG
1 TTTGTAGATTAAATAAACTACCACTTGGTTCGTAATTGAACCACACTG
46775625 TTTGTAGATTAAA
1 TTTGTAGATTAAA
46775638 CTGACACTCT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.35
Consensus pattern (48 bp):
TTTGTAGATTAAATAAACTACCACTTGGTTCGTAATTGAACCACACTG
Found at i:46776218 original size:28 final size:28
Alignment explanation
Indices: 46776187--46776295 Score: 119
Period size: 28 Copynumber: 3.9 Consensus size: 28
46776177 GTAATATTTG
* *
46776187 AAAAATAGGGGTAACATTGTGAAATCTA
1 AAAAATAGGGGTAAAATTGTAAAATCTA
* *
46776215 AAAAACTTGGGGTAAAATTGTAAAATCTT
1 AAAAA-TAGGGGTAAAATTGTAAAATCTA
* * * * *
46776244 GAAAATAAGGGAAAAAATATAAAATCTA
1 AAAAATAGGGGTAAAATTGTAAAATCTA
*
46776272 AAAAGTAGGGGTAAAATTGTAAAA
1 AAAAATAGGGGTAAAATTGTAAAA
46776296 CTTGAAAAAT
Statistics
Matches: 63, Mismatches: 17, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
28 40 0.63
29 23 0.37
ACGTcount: A:0.52, C:0.05, G:0.19, T:0.24
Consensus pattern (28 bp):
AAAAATAGGGGTAAAATTGTAAAATCTA
Found at i:46776237 original size:57 final size:56
Alignment explanation
Indices: 46776176--46776308 Score: 151
Period size: 56 Copynumber: 2.4 Consensus size: 56
46776166 AAGGGAAAGC
* * * * * * * *
46776176 TGTAATATTTGAAAAATAGGGGTAACATTGTGAAATCTAAAAAACTTGGGGTAAAAT
1 TGTAAAATTTGAAAAATAAGGGAAAAAATATAAAATCT-AAAAACTAGGGGTAAAAT
*
46776233 TGTAAAATCTTG-AAAATAAGGGAAAAAATATAAAATCTAAAAAGTAGGGGTAAAAT
1 TGTAAAAT-TTGAAAAATAAGGGAAAAAATATAAAATCTAAAAACTAGGGGTAAAAT
*
46776289 TGTAAAACTTGAAAAATAAG
1 TGTAAAATTTGAAAAATAAG
46776309 AGACACACAG
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
55 3 0.05
56 31 0.48
57 27 0.42
58 3 0.05
ACGTcount: A:0.50, C:0.05, G:0.19, T:0.26
Consensus pattern (56 bp):
TGTAAAATTTGAAAAATAAGGGAAAAAATATAAAATCTAAAAACTAGGGGTAAAAT
Found at i:46776304 original size:29 final size:27
Alignment explanation
Indices: 46776184--46776306 Score: 97
Period size: 28 Copynumber: 4.4 Consensus size: 27
46776174 GCTGTAATAT
* *
46776184 TTGAAAAATAGGGGTAACATTGTGAAA
1 TTGAAAAATAGGGGTAAAATTGTAAAA
* *
46776211 TCTAAAAAACTTGGGGTAAAATTGTAAAA
1 T-TGAAAAA-TAGGGGTAAAATTGTAAAA
* * * *
46776240 TCTTG-AAAATAAGGGAAAAAATATAAAA
1 --TTGAAAAATAGGGGTAAAATTGTAAAA
46776268 TCT-AAAAAGTAGGGGTAAAATTGTAAAA
1 T-TGAAAAA-TAGGGGTAAAATTGTAAAA
46776296 CTTGAAAAATA
1 -TTGAAAAATA
46776307 AGAGACACAC
Statistics
Matches: 73, Mismatches: 14, Indels: 17
0.70 0.13 0.16
Matches are distributed among these distances:
26 1 0.01
27 6 0.08
28 38 0.52
29 26 0.36
30 1 0.01
31 1 0.01
ACGTcount: A:0.51, C:0.05, G:0.19, T:0.25
Consensus pattern (27 bp):
TTGAAAAATAGGGGTAAAATTGTAAAA
Found at i:46780577 original size:38 final size:38
Alignment explanation
Indices: 46780533--46780606 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
46780523 TGCCTACTAT
46780533 TACTGTTAAACCAAACACATGTTAAGCATGTCTACTGC
1 TACTGTTAAACCAAACACATGTTAAGCATGTCTACTGC
* ** *
46780571 TACTGTTGAACTGAATACATGTTAAGCATGTCTACT
1 TACTGTTAAACCAAACACATGTTAAGCATGTCTACT
46780607 ATTTTACATG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (38 bp):
TACTGTTAAACCAAACACATGTTAAGCATGTCTACTGC
Found at i:46784830 original size:59 final size:59
Alignment explanation
Indices: 46784762--46784876 Score: 185
Period size: 59 Copynumber: 1.9 Consensus size: 59
46784752 GGTTGAATGC
* *
46784762 ATACCTTCTGAAGCTAAAGAATGGCAAATAACGTTGTTGGTTGGATTCCTTTGGACGAT
1 ATACCTTCTGAAACTAAAGAATGGCAAATAACGTTGTTGGTTAGATTCCTTTGGACGAT
* * *
46784821 ATACCTTCTGAAATTGAAGAATGGCAAATAATGTTGTTGGTTAGATTCCTTTGGAC
1 ATACCTTCTGAAACTAAAGAATGGCAAATAACGTTGTTGGTTAGATTCCTTTGGAC
46784877 AATGTTAATC
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.34
Consensus pattern (59 bp):
ATACCTTCTGAAACTAAAGAATGGCAAATAACGTTGTTGGTTAGATTCCTTTGGACGAT
Found at i:46785220 original size:17 final size:17
Alignment explanation
Indices: 46785198--46785237 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
46785188 TCCACCAAGA
* *
46785198 AATACTATTCGCCGGGC
1 AATACTATTAGCCAGGC
46785215 AATACTATTAGCCAGGC
1 AATACTATTAGCCAGGC
*
46785232 TATACT
1 AATACT
46785238 TATACGCCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (17 bp):
AATACTATTAGCCAGGC
Found at i:46787589 original size:14 final size:14
Alignment explanation
Indices: 46787570--46787597 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
46787560 GTTTAAAGAT
46787570 GATTAAAAACTAAG
1 GATTAAAAACTAAG
46787584 GATTAAAAACTAAG
1 GATTAAAAACTAAG
46787598 TAAAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
GATTAAAAACTAAG
Found at i:46793765 original size:12 final size:10
Alignment explanation
Indices: 46793736--46793775 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
46793726 TCAAAAATAG
46793736 TTAAAATTAA
1 TTAAAATTAA
*
46793746 TCAAAATTAA
1 TTAAAATTAA
46793756 CTATAAAATTAA
1 -T-TAAAATTAA
46793768 TTAAAATT
1 TTAAAATT
46793776 CATCATGTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 16 0.62
11 2 0.08
12 8 0.31
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (10 bp):
TTAAAATTAA
Found at i:46801926 original size:50 final size:50
Alignment explanation
Indices: 46801837--46802012 Score: 190
Period size: 50 Copynumber: 3.4 Consensus size: 50
46801827 CTGTACTACT
* * * **
46801837 AATGCCATATCCCAAATATGGTCTTATATGGGAGTTCTCATATCGGTGCC
1 AATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATCGGTGCC
* * * *
46801887 CATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTGCC
1 AATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATCGGTGCC
* *
46801937 AACGCCATGTCCCAAACATGGTCTTACATGGGACCTCCCATAGTCTTAGTGATGCC
1 AATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATA-TC---G-G-TGCC
*
46801993 AATGCCATGTCCCAGACATG
1 AATGCCATGTCCCAAACATG
46802013 CTATTACTGG
Statistics
Matches: 103, Mismatches: 17, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
50 77 0.75
51 2 0.02
54 1 0.01
55 1 0.01
56 22 0.21
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (50 bp):
AATGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATATCGGTGCC
Found at i:46802362 original size:30 final size:30
Alignment explanation
Indices: 46802326--46802384 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
46802316 TCCTTGACTC
46802326 AAACTTTAGAAAAATTACAATTTTTCCCCT
1 AAACTTTAGAAAAATTACAATTTTTCCCCT
* * * *
46802356 AAACTTTTGCATAATTACACTTTTTCCCC
1 AAACTTTAGAAAAATTACAATTTTTCCCC
46802385 AAAGCTCAGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACAATTTTTCCCCT
Found at i:46807749 original size:21 final size:22
Alignment explanation
Indices: 46807705--46807749 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
46807695 GAACAAATTG
*
46807705 TTGATCCTATTTCTTTTTTGAT
1 TTGATCCTATTTCTTTTCTGAT
46807727 TTGAT-CTA-TTCTTTTCTGTAT
1 TTGATCCTATTTCTTTTCTG-AT
46807748 TT
1 TT
46807750 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 7 0.33
22 5 0.24
ACGTcount: A:0.13, C:0.13, G:0.09, T:0.64
Consensus pattern (22 bp):
TTGATCCTATTTCTTTTCTGAT
Found at i:46807805 original size:21 final size:23
Alignment explanation
Indices: 46807781--46807823 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
46807771 TTAATTTTTT
*
46807781 AAAACATATTT-CTTCT-TTTAG
1 AAAACAGATTTGCTTCTCTTTAG
*
46807802 AAAAGAGATTTGCTTCTCTTTA
1 AAAACAGATTTGCTTCTCTTTA
46807824 TAATTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (23 bp):
AAAACAGATTTGCTTCTCTTTAG
Found at i:46809836 original size:21 final size:22
Alignment explanation
Indices: 46809792--46809836 Score: 58
Period size: 20 Copynumber: 2.1 Consensus size: 22
46809782 GAACAAATTG
*
46809792 TTGATCCTATTTCTTTTTTGAT
1 TTGATCCTATTTCTTTTCTGAT
46809814 TTGAT-CTA-TTCTTTTCTGTAT
1 TTGATCCTATTTCTTTTCTG-AT
46809835 TT
1 TT
46809837 CTCTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.43
21 7 0.33
22 5 0.24
ACGTcount: A:0.13, C:0.13, G:0.09, T:0.64
Consensus pattern (22 bp):
TTGATCCTATTTCTTTTCTGAT
Found at i:46809892 original size:21 final size:23
Alignment explanation
Indices: 46809868--46809910 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
46809858 TTAATTTTTT
*
46809868 AAAACATATTT-CTTCT-TTTAG
1 AAAACAGATTTGCTTCTCTTTAG
*
46809889 AAAAGAGATTTGCTTCTCTTTA
1 AAAACAGATTTGCTTCTCTTTA
46809911 TAATTAATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.33, C:0.14, G:0.09, T:0.44
Consensus pattern (23 bp):
AAAACAGATTTGCTTCTCTTTAG
Found at i:46812376 original size:21 final size:23
Alignment explanation
Indices: 46812334--46812376 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 23
46812324 TAATTAATTA
*
46812334 TAAAGAGAAGCAAATCTCTTTTC
1 TAAAGAGAAGCAAATATCTTTTC
*
46812357 TAAA-AGAAG-AAATATGTTTT
1 TAAAGAGAAGCAAATATCTTTT
46812377 AAAAAATTAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.44, C:0.09, G:0.14, T:0.33
Consensus pattern (23 bp):
TAAAGAGAAGCAAATATCTTTTC
Found at i:46818626 original size:27 final size:27
Alignment explanation
Indices: 46818588--46818642 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
46818578 TGTTTTTCTA
46818588 CTATTGAAGATACAGATTCGTCGTATC
1 CTATTGAAGATACAGATTCGTCGTATC
*
46818615 CTATTGAAGATACAGATTCTTCGTATC
1 CTATTGAAGATACAGATTCGTCGTATC
46818642 C
1 C
46818643 CATGTATGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (27 bp):
CTATTGAAGATACAGATTCGTCGTATC
Found at i:46834469 original size:17 final size:17
Alignment explanation
Indices: 46834447--46834481 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
46834437 TTGGCATCCA
46834447 TATGTTAATGAAAACCC
1 TATGTTAATGAAAACCC
*
46834464 TATGTTAATGACAACCC
1 TATGTTAATGAAAACCC
46834481 T
1 T
46834482 TTGTCATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.20, G:0.11, T:0.31
Consensus pattern (17 bp):
TATGTTAATGAAAACCC
Found at i:46837469 original size:49 final size:49
Alignment explanation
Indices: 46837246--46837528 Score: 262
Period size: 49 Copynumber: 5.7 Consensus size: 49
46837236 AATAATGGTT
* * * * ** *
46837246 ACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATGAAAGGTC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGAATCGGAAAG-TTGATC
* * * * * * * * *
46837296 GCATGTGTAGTACTATGTGTAGCCTACTATGCGTACCGGATAGTTTCGATC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGAATCGGAAAG-TT-GATC
* * * ** *
46837347 ACGTGTGTAGTACTATGTGCAAGATACTACGTGTAAT-GCATATTTATGGTC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTG-AATCGGA-AAGT-TGATC
**
46837398 ACGTAAGTAGTACTATGTGCAGGCTACTACGTGAATCGGAAAGTTGATC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGAATCGGAAAGTTGATC
* *
46837447 ATGTGTGTAGTACTATGTGCAGGCTACTACGTGAATCGAAAAGTTGATC
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGAATCGGAAAGTTGATC
*
46837496 ACGTGTGTAGTACTATGTGAAGGCTACTACGTG
1 ACGTGTGTAGTACTATGTGCAGGCTACTACGTG
46837529 TATTGAATGA
Statistics
Matches: 188, Mismatches: 40, Indels: 11
0.79 0.17 0.05
Matches are distributed among these distances:
49 80 0.43
50 41 0.22
51 65 0.35
52 2 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (49 bp):
ACGTGTGTAGTACTATGTGCAGGCTACTACGTGAATCGGAAAGTTGATC
Found at i:46844493 original size:15 final size:16
Alignment explanation
Indices: 46844473--46844502 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
46844463 TGGTGACTTA
46844473 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
46844488 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
46844503 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:46846428 original size:86 final size:86
Alignment explanation
Indices: 46846282--46846445 Score: 222
Period size: 86 Copynumber: 1.9 Consensus size: 86
46846272 TCTAGAACAT
* * **
46846282 TGGTGGTTCATCCACAAATTACTGAAAAATTTTATCAACAAATGAGTTTTGCATTTACAACAAGT
1 TGGTGGTTCATCCACAAATTACTGAAAAATTTTACCAACAAATGAGTTGTGCATCCACAACAAGT
*
46846347 GGCAATTTATTTGCATATTAC
66 AGCAATTTATTTGCATATTAC
* * * *
46846368 TGGTGGTTCATCCACAAATTACTGACAACTTTTACCTACAGAT-ATGTTGTGCATCCACAACAAG
1 TGGTGGTTCATCCACAAATTACTGAAAAATTTTACCAACAAATGA-GTTGTGCATCCACAACAAG
*
46846432 TAGCATTTTATTTG
65 TAGCAATTTATTTG
46846446 TCAATGTTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
85 1 0.01
86 66 0.99
ACGTcount: A:0.32, C:0.18, G:0.15, T:0.35
Consensus pattern (86 bp):
TGGTGGTTCATCCACAAATTACTGAAAAATTTTACCAACAAATGAGTTGTGCATCCACAACAAGT
AGCAATTTATTTGCATATTAC
Found at i:46847037 original size:20 final size:21
Alignment explanation
Indices: 46847014--46847054 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
46847004 TAGCATGCAT
*
46847014 GGTATTTAAAT-TGAATTTAG
1 GGTATTGAAATATGAATTTAG
*
46847034 GGTATTGAAATATGGATTTAG
1 GGTATTGAAATATGAATTTAG
46847055 AATTAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.34, C:0.00, G:0.24, T:0.41
Consensus pattern (21 bp):
GGTATTGAAATATGAATTTAG
Found at i:46857455 original size:139 final size:137
Alignment explanation
Indices: 46857155--46857659 Score: 663
Period size: 139 Copynumber: 3.6 Consensus size: 137
46857145 ATGTAGTATT
* * * *
46857155 AATTAATTAATATAAACAGTTATATTAATTAATTTTGGTCAAAATATAAAAGATACGAAAATTAA
1 AATTTATTAATATAAACAGTTATATTAATTAATTTTGATCAAAATATAAAAGACATGAAAATTAA
* * * *
46857220 TATTCTTTTGGAAATAATATAATTAATATATGAATTTTATTCATACAAAATGTTAATTTTATATG
66 TATTCTTTTGAAAAGAATATAATT-ATATATGAATTTTATTCATACAAAATATTAATTTTATATA
*
46857285 TTTTACCG
130 TTTTATCG
* *
46857293 AATTTATTAATATAAACAATTATATTAATTAATTTTGATCAAAATATAAAAGACATGGAAATTAA
1 AATTTATTAATATAAACAGTTATATTAATTAATTTTGATCAAAATATAAAAGACATGAAAATTAA
* *
46857358 TATTCTTTTGAAAAAAGAATATAATTATATATAAATTTGATTCATACAAAATATTAATTTTATAT
66 TATTCTTTTG--AAAAGAATATAATTATATATGAATTTTATTCATACAAAATATTAATTTTATAT
46857423 ATTTTATCG
129 ATTTTATCG
* * * **
46857432 AATTTATTAATATAAATAGTTATATTAATTAATTTCTG-TCAAATTATAAAAAAACATGAATGTT
1 AATTTATTAATATAAACAGTTATATTAATTAATTT-TGATCAAAATAT-AAAAGACATGAAAATT
* * * * *
46857496 AATATTCTTTTGGAAAGAATATAATAAATATATGAATTTTATTCATGCAAAATAGTAATTGTATA
64 AATATTCTTTTGAAAAGAATATAAT-TATATATGAATTTTATTCATACAAAATATTAATTTTATA
*
46857561 TATTTTATTG
128 TATTTTATCG
* * * * *
46857571 AATTTATTAATATAAACAGTTATATTAATTTA-TTTCAGTCAAAGTATAAAATATATGAAAATTA
1 AATTTATTAATATAAACAGTTATATTAATTAATTTTGA-TCAAAATATAAAAGACATGAAAATTA
*
46857635 ATATACTTTTGAAAAGAATATAATT
65 ATATTCTTTTGAAAAGAATATAATT
46857660 TTTTTTCTAA
Statistics
Matches: 321, Mismatches: 39, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
137 1 0.00
138 118 0.37
139 164 0.51
140 38 0.12
ACGTcount: A:0.46, C:0.05, G:0.07, T:0.42
Consensus pattern (137 bp):
AATTTATTAATATAAACAGTTATATTAATTAATTTTGATCAAAATATAAAAGACATGAAAATTAA
TATTCTTTTGAAAAGAATATAATTATATATGAATTTTATTCATACAAAATATTAATTTTATATAT
TTTATCG
Found at i:46857727 original size:74 final size:75
Alignment explanation
Indices: 46857640--46857785 Score: 258
Period size: 76 Copynumber: 1.9 Consensus size: 75
46857630 AATTAATATA
*
46857640 CTTTTGAAAAGAATATAA-TTTTTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGGGAATA
1 CTTTTGAAAAGAATATAACTTTTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGGGAATA
46857704 ATCCTATACT
66 ATCCTATACT
*
46857714 CTTTTGGAAAGAATATAACTTTTTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGGGAAT
1 CTTTTGAAAAGAATATAAC-TTTTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGGGAAT
46857779 AATCCTA
65 AATCCTA
46857786 GTTTTCCTTT
Statistics
Matches: 68, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
74 17 0.25
76 51 0.75
ACGTcount: A:0.30, C:0.16, G:0.09, T:0.45
Consensus pattern (75 bp):
CTTTTGAAAAGAATATAACTTTTTTTTCTAACTTTCCATTTGCCTTCTCTATTAATAAGGGAATA
ATCCTATACT
Found at i:46859045 original size:17 final size:15
Alignment explanation
Indices: 46859023--46859057 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 15
46859013 ATAAAAAACT
46859023 AAAAATTAACTAAGTAA
1 AAAAATTAA--AAGTAA
46859040 AAAAATTAAAAGTAA
1 AAAAATTAAAAGTAA
46859055 AAA
1 AAA
46859058 TTCCAATGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 9 0.50
17 9 0.50
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.20
Consensus pattern (15 bp):
AAAAATTAAAAGTAA
Found at i:46859357 original size:104 final size:105
Alignment explanation
Indices: 46859238--46859446 Score: 402
Period size: 104 Copynumber: 2.0 Consensus size: 105
46859228 ATTTACTACG
46859238 AAACTGCATGAATTAGAGCTCAAAAGGTACTAAAAAGCCAATATATTTTTGTG-TTCCAATAACT
1 AAACTGCATGAATTAGAGCTCAAAAGGTACTAAAAAGCCAATATATTTTTGTGTTTCCAATAACT
46859302 TAACTAGGTTACTCTAATAATATTAGATACCTAGAGGCAA
66 TAACTAGGTTACTCTAATAATATTAGATACCTAGAGGCAA
*
46859342 AAACTGCATGAATTAGAGCTCAAAATGTACTAAAAAGCCAATATATTTTTGTGTTTCCAATAACT
1 AAACTGCATGAATTAGAGCTCAAAAGGTACTAAAAAGCCAATATATTTTTGTGTTTCCAATAACT
46859407 TAACTAGGTTACTCTAATAATATTAGATACCTAGAGGCAA
66 TAACTAGGTTACTCTAATAATATTAGATACCTAGAGGCAA
46859447 GTGATCTGTC
Statistics
Matches: 103, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
104 52 0.50
105 51 0.50
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (105 bp):
AAACTGCATGAATTAGAGCTCAAAAGGTACTAAAAAGCCAATATATTTTTGTGTTTCCAATAACT
TAACTAGGTTACTCTAATAATATTAGATACCTAGAGGCAA
Found at i:46872482 original size:50 final size:50
Alignment explanation
Indices: 46872374--46872566 Score: 206
Period size: 50 Copynumber: 3.7 Consensus size: 50
46872364 GGGAATGAGA
* *
46872374 TCCCATGTAAGACCATGTCTGGGACATGGCATTAGCATCATTGAGATTAAGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAGA-T--GAGAGG
* **
46872430 TCCCATGTAAAACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * **
46872480 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * *
46872530 TCCCATGTAAGACCATATCTGGGATATGACATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
46872567 GTACAGAAAA
Statistics
Matches: 117, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 78 0.67
52 1 0.01
53 4 0.03
55 1 0.01
56 33 0.28
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:46872824 original size:4 final size:4
Alignment explanation
Indices: 46872815--46872853 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
46872805 AAGAGTAATT
* * *
46872815 TAAG TAAG TAAG TAAG TAAA CAAG TAAG TGAG TAAG TAA
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAA
46872854 AAAAGCGAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.51, C:0.03, G:0.23, T:0.23
Consensus pattern (4 bp):
TAAG
Found at i:46872841 original size:20 final size:20
Alignment explanation
Indices: 46872816--46872854 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
46872806 AGAGTAATTT
46872816 AAGTAAGTAAGTAAGTAAAC
1 AAGTAAGTAAGTAAGTAAAC
*
46872836 AAGTAAGTGAGTAAGTAAA
1 AAGTAAGTAAGTAAGTAAA
46872855 AAAGCGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.21
Consensus pattern (20 bp):
AAGTAAGTAAGTAAGTAAAC
Found at i:46874540 original size:50 final size:50
Alignment explanation
Indices: 46874412--46874603 Score: 163
Period size: 50 Copynumber: 3.7 Consensus size: 50
46874402 GGGAATGATA
**
46874412 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C---GA-A-TATGAGAAC
*** * * *
46874468 TCCCCCATAAGACCATGCCTGGGACATGGCTTTGGCACCAATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGAATATGAGAAC
* * * * *
46874518 TCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-GTACA-GAAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGAATATGAGAAC
* * *
46874566 ATCCCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
46874604 TGTATTATCA
Statistics
Matches: 111, Mismatches: 24, Indels: 9
0.77 0.17 0.06
Matches are distributed among these distances:
48 5 0.05
49 34 0.31
50 37 0.33
51 1 0.01
52 1 0.01
55 1 0.01
56 32 0.29
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.24
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACGAATATGAGAAC
Found at i:46874812 original size:4 final size:4
Alignment explanation
Indices: 46874803--46874841 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
46874793 AAGAGTTATT
* * *
46874803 TAAG TAAG TAAG TAAG TAAA CAAG TAAG TGAG TAAG TAA
1 TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAAG TAA
46874842 AGAAGCGAGT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.51, C:0.03, G:0.23, T:0.23
Consensus pattern (4 bp):
TAAG
Found at i:46874829 original size:20 final size:20
Alignment explanation
Indices: 46874804--46874842 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
46874794 AGAGTTATTT
46874804 AAGTAAGTAAGTAAGTAAAC
1 AAGTAAGTAAGTAAGTAAAC
*
46874824 AAGTAAGTGAGTAAGTAAA
1 AAGTAAGTAAGTAAGTAAA
46874843 GAAGCGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.03, G:0.23, T:0.21
Consensus pattern (20 bp):
AAGTAAGTAAGTAAGTAAAC
Found at i:46876090 original size:12 final size:12
Alignment explanation
Indices: 46876073--46876111 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
46876063 ATAAGTTATT
46876073 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
46876085 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
46876097 TAAGTGAGTAAG
1 TAAGTAAGCAAG
46876109 TAA
1 TAA
46876112 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:46877360 original size:12 final size:12
Alignment explanation
Indices: 46877343--46877381 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
46877333 ATAAGTTATT
46877343 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
46877355 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
46877367 TAAGTGAGTAAG
1 TAAGTAAGCAAG
46877379 TAA
1 TAA
46877382 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:46877956 original size:12 final size:12
Alignment explanation
Indices: 46877939--46877977 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
46877929 ATGAGTTATT
46877939 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
46877951 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
46877963 TAAGTGAGTAAG
1 TAAGTAAGCAAG
46877975 TAA
1 TAA
46877978 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:46878394 original size:596 final size:595
Alignment explanation
Indices: 46877262--46879015 Score: 3193
Period size: 596 Copynumber: 2.9 Consensus size: 595
46877252 CCAAGGATAG
*
46877262 TATAAGGATTGAGAATATCTCAGTTATCAGTTCAGAAAGAAATTTCAGCAAGGGAGGAGTAAGTT
1 TATAAGGATTGAGAATATCTCAGTTATCAGTTGAGAAAGAAATTTCAGCAAGGGAGGAGTAAGTT
*
46877327 ATAATCATAAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGT
66 ATAATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGT
46877392 AAAGATTCTAATGTTTGATGAAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTT
131 AAAGATTCTAATGTTTGATGAAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTT
*
46877457 ACTTGTAAACTTACTAAGCTTTATGCTTACTTTCTTTATTTTCCTTATTTTTATAGTATCGTCAA
196 ACTTGTAAACTTACTAAGCTTTATGCTTACTTTCTTTATTTTCCTTATTTTTATAGTATCGCCAA
46877522 GTCAGTTCGAGGATCACAAAGACGTCGGAGTTCTTCTCACACTATATACAGACATCTCGGTATTA
261 GTCAGTTCGAGGATCAC-AAGACGTCGGAGTTCTTCTCACACTATATACAGACATCTCGGTATTA
* *
46877587 TGTGATTTCAAAATGTGTAAAGCTATGGCATGTATCGAGACTTAGTCATTTTGAGCGTGTTTATA
325 TGTGATTTCGAAATGTGTAAAGCTATGGCATGTATAGAGACTTAGTCATTTTGAGCGTGTTTATA
** *
46877652 TGATATGGCCAATGGTTAGCTATTGTAATGGCTAATTAAGAACATGTGTGGTGTTATGAATGCCT
390 TGATATGGTGAATGGTTAGCTATTGCAATGGCTAATTAAGAACATGTGTGGTGTTATGAATGCCT
* *
46877717 AGGTGATAGTTTATGCCTAGAAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGGCA
455 AGGTGATAGTTTATACCTAGAAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGACA
** * *
46877782 ACAATAGTGACATGACTTTGAAAAATCACCAGGGATAATATACTTTCAATAAGCATTATAATAAA
520 ACAGCAGTGACATGACTTTGAAAAATCACCAGGGATAGTATACTTTCAATAAGCATAATAATAAA
46877847 TTCAGGTGAGT
585 TTCAGGTGAGT
46877858 TATAAGGATTGAGAATATCTCAGTTATCAGTTGAGAAAGAAATTTCAGCAAGGGAGGAGTAAGTT
1 TATAAGGATTGAGAATATCTCAGTTATCAGTTGAGAAAGAAATTTCAGCAAGGGAGGAGTAAGTT
46877923 ATAATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGT
66 ATAATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGT
46877988 AAAGATTCTAATGTTTGATGAAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTT
131 AAAGATTCTAATGTTTGATGAAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTT
*
46878053 ACTTGTAAACTTACTAAGCTTTATGCTTACTTTCTTTATTTTCCTTATTTTTATAGTATTGCCAA
196 ACTTGTAAACTTACTAAGCTTTATGCTTACTTTCTTTATTTTCCTTATTTTTATAGTATCGCCAA
* *
46878118 GTCAGTTCGAGGGTCACACAGACGCCGGAGTTCTTCTCACACTATATACAGACATCTCGGTATTA
261 GTCAGTTCGAGGATCACA-AGACGTCGGAGTTCTTCTCACACTATATACAGACATCTCGGTATTA
* * * * *
46878183 TGTGATTTCGAAATGCGGAAAGCTATGGCATGTATAGAGACTTAGTCATTTTAAGTGTGTTTTTA
325 TGTGATTTCGAAATGTGTAAAGCTATGGCATGTATAGAGACTTAGTCATTTTGAGCGTGTTTATA
*
46878248 TAATATGGTGAATGGTTAGCTATTGCAATGGCTAATTAAGAACATGTGTGGTGTTATGAATGCCT
390 TGATATGGTGAATGGTTAGCTATTGCAATGGCTAATTAAGAACATGTGTGGTGTTATGAATGCCT
*
46878313 AGGTGATAGTTTATACCTAGAAAATATGAAAGAGTCAAAATTTGCAATGAAACAGTTTTGGGACA
455 AGGTGATAGTTTATACCTAGAAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGACA
*
46878378 ACAGCAGTGACATGACTTTGAAAAATCACAAGGGATAGTATACTTTCAATAAGCATAATAATAAA
520 ACAGCAGTGACATGACTTTGAAAAATCACCAGGGATAGTATACTTTCAATAAGCATAATAATAAA
*
46878443 TTTAGGTGAGT
585 TTCAGGTGAGT
46878454 TATAAGGATTGAGAATATCTCAGTTATCAGTTGAGAAAGAAATTTCAGCAAGGGAGGAGTAAGTT
1 TATAAGGATTGAGAATATCTCAGTTATCAGTTGAGAAAGAAATTTCAGCAAGGGAGGAGTAAGTT
* *
46878519 ATAATCATGAGTTATTTAAGTAAGAAAGTAAGTAAACAAGTAAGAGAGTAAGTAAAGAAGCGAGT
66 ATAATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGT
46878584 AAAGATTCTAATGTTTGATGAAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTT
131 AAAGATTCTAATGTTTGATGAAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTT
46878649 ACTTGTAAACTTACTAAGCTTTATGCTTACTTTCTTTATTTTCCTTATTTTTATAGTATCGCCAA
196 ACTTGTAAACTTACTAAGCTTTATGCTTACTTTCTTTATTTTCCTTATTTTTATAGTATCGCCAA
* *
46878714 GTCAGTTCGAGGATCACAAGGACGTCGGAGTTCGTCTCACACTATCTACAGACATCTCGGTATTA
261 GTCAGTTCGAGGATCACAA-GACGTCGGAGTTCTTCTCACACTATATACAGACATCTCGGTATTA
* *
46878779 TGTGATTTCGAAACGTGTAAAGCTATGGCATGTATAGAGACTTAGTCATTTTGAGCGTGTTTGTA
325 TGTGATTTCGAAATGTGTAAAGCTATGGCATGTATAGAGACTTAGTCATTTTGAGCGTGTTTATA
46878844 TGATATGGTGAATGGTTAGCTATTGCAATGGCTAATTAAGAACATGTGTGGTGTTATGAATGCCT
390 TGATATGGTGAATGGTTAGCTATTGCAATGGCTAATTAAGAACATGTGTGGTGTTATGAATGCCT
46878909 AGGTGATAGTTTATACCTAGAAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGACA
455 AGGTGATAGTTTATACCTAGAAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGACA
46878974 ACAGCAGTGACATGACTTTGAAAAATCACCAGGGATAGTATA
520 ACAGCAGTGACATGACTTTGAAAAATCACCAGGGATAGTATA
46879016 AATGAATTAG
Statistics
Matches: 1114, Mismatches: 42, Indels: 4
0.96 0.04 0.00
Matches are distributed among these distances:
595 2 0.00
596 1112 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.34
Consensus pattern (595 bp):
TATAAGGATTGAGAATATCTCAGTTATCAGTTGAGAAAGAAATTTCAGCAAGGGAGGAGTAAGTT
ATAATCATGAGTTATTTAAGTAAGCAAGTAAGTAAACAAGTAAGTGAGTAAGTAAAGAAGCGAGT
AAAGATTCTAATGTTTGATGAAATTTATGAGTGTGATTATTTATGATAAATGTTGTTATTTATTT
ACTTGTAAACTTACTAAGCTTTATGCTTACTTTCTTTATTTTCCTTATTTTTATAGTATCGCCAA
GTCAGTTCGAGGATCACAAGACGTCGGAGTTCTTCTCACACTATATACAGACATCTCGGTATTAT
GTGATTTCGAAATGTGTAAAGCTATGGCATGTATAGAGACTTAGTCATTTTGAGCGTGTTTATAT
GATATGGTGAATGGTTAGCTATTGCAATGGCTAATTAAGAACATGTGTGGTGTTATGAATGCCTA
GGTGATAGTTTATACCTAGAAAATATGAAAGAGTAAAAATTTGCAATGAAACAGTTTTGGGACAA
CAGCAGTGACATGACTTTGAAAAATCACCAGGGATAGTATACTTTCAATAAGCATAATAATAAAT
TCAGGTGAGT
Found at i:46878561 original size:20 final size:20
Alignment explanation
Indices: 46878536--46878574 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
46878526 TGAGTTATTT
46878536 AAGTAAGAAAGTAAGTAAAC
1 AAGTAAGAAAGTAAGTAAAC
*
46878556 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAAAGTAAGTAAA
46878575 GAAGCGAGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.59, C:0.03, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAAAGTAAGTAAAC
Found at i:46882288 original size:51 final size:51
Alignment explanation
Indices: 46882212--46882314 Score: 152
Period size: 51 Copynumber: 2.0 Consensus size: 51
46882202 AGTGAACTTG
*
46882212 TACCAAATATAATTACCTGAAAAAGAGAAAAGAAAATCATGGACAGTTGGA
1 TACCAAATATAACTACCTGAAAAAGAGAAAAGAAAATCATGGACAGTTGGA
* ** **
46882263 TACCAGATATAACTACCTGAAAAAGAGGGAAGAAAATCATGGATTGTTGGA
1 TACCAAATATAACTACCTGAAAAAGAGAAAAGAAAATCATGGACAGTTGGA
46882314 T
1 T
46882315 TTACTCTAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.47, C:0.12, G:0.20, T:0.21
Consensus pattern (51 bp):
TACCAAATATAACTACCTGAAAAAGAGAAAAGAAAATCATGGACAGTTGGA
Found at i:46884414 original size:40 final size:40
Alignment explanation
Indices: 46884331--46884673 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
46884321 TTGAATGCTG
* * * * * *
46884331 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
46884371 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
46884411 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
46884451 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
46884491 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
46884531 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
46884571 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
46884611 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
46884650 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
46884674 TGAACGAGGA
Statistics
Matches: 281, Mismatches: 19, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.12
40 238 0.85
41 8 0.03
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:46892442 original size:40 final size:39
Alignment explanation
Indices: 46892411--46892620 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
46892401 GGACTAAGAT
* *
46892411 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
46892451 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
46892491 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
46892531 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
46892571 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
46892610 CCGAAGGCATT
1 CCGAAGGCATT
46892621 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:46892574 original size:120 final size:120
Alignment explanation
Indices: 46892358--46892620 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
46892348 TTGAATGCTG
* *
46892358 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
46892422 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
46892478 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
46892541 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
46892597 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
46892621 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:46892640 original size:79 final size:80
Alignment explanation
Indices: 46892359--46892655 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
46892349 TGAATGCTGT
* ** * * * **
46892359 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
46892422 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
46892439 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
46892503 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
46892519 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
46892583 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
46892598 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
46892656 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:46911660 original size:21 final size:21
Alignment explanation
Indices: 46911617--46911663 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
46911607 GCGGCGGTTA
* *
46911617 TGGTTCCTCCGACGGGGATTT
1 TGGTTCCTCCGAAGGGCATTT
46911638 TGGTTCCTCCGATAGGGCA-TT
1 TGGTTCCTCCGA-AGGGCATTT
46911659 TGGTT
1 TGGTT
46911664 TTCGAAGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.11, C:0.21, G:0.32, T:0.36
Consensus pattern (21 bp):
TGGTTCCTCCGAAGGGCATTT
Found at i:46912637 original size:7 final size:7
Alignment explanation
Indices: 46912627--46912652 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
46912617 TTATATACAT
46912627 AATACTA
1 AATACTA
46912634 AATACTA
1 AATACTA
46912641 AATACTA
1 AATACTA
46912648 AATAC
1 AATAC
46912653 CAATAGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:46912858 original size:20 final size:20
Alignment explanation
Indices: 46912821--46912858 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
46912811 ATTATTTTTA
*
46912821 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
46912841 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
46912859 TACCTCATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:46913792 original size:17 final size:16
Alignment explanation
Indices: 46913762--46913795 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
46913752 ACGATTTAAA
46913762 AAAAATTTTAAAAAAT
1 AAAAATTTTAAAAAAT
*
46913778 AAAAATTATTTAAAAAT
1 AAAAATT-TTAAAAAAT
46913795 A
1 A
46913796 GGGATTTAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AAAAATTTTAAAAAAT
Found at i:46913846 original size:51 final size:52
Alignment explanation
Indices: 46913791--46913891 Score: 134
Period size: 51 Copynumber: 2.0 Consensus size: 52
46913781 AATTATTTAA
*
46913791 AAATAGGGATTTAAGAGAAATTTAAGAGGAAA-TTGAGAGCAAA-TTGAGATT
1 AAATAGGGATTTAAGAGAAATTT-AGAAGAAATTTGAGAGCAAATTTGAGATT
* * * *
46913842 AAATATGGATTTGAGAGAAATTTGGAAGAAATTTGAGAGGAAATTTGAGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGAAATTTGAGAGCAAATTTGAGA
46913892 GAGGATTAGT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
50 6 0.14
51 31 0.72
52 6 0.14
ACGTcount: A:0.46, C:0.01, G:0.27, T:0.27
Consensus pattern (52 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGAAATTTGAGAGCAAATTTGAGATT
Found at i:46913864 original size:11 final size:11
Alignment explanation
Indices: 46913850--46913893 Score: 63
Period size: 11 Copynumber: 3.9 Consensus size: 11
46913840 TTAAATATGG
46913850 ATTTGAGAGAA
1 ATTTGAGAGAA
46913861 ATTTG-GAAGAA
1 ATTTGAG-AGAA
46913872 ATTTGAGAGGAA
1 ATTTGAGA-GAA
46913884 ATTTGAGAGA
1 ATTTGAGAGA
46913894 GGATTAGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.03
11 17 0.57
12 12 0.40
ACGTcount: A:0.43, C:0.00, G:0.30, T:0.27
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:46913886 original size:12 final size:12
Alignment explanation
Indices: 46913850--46913892 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
46913840 TTAAATATGG
46913850 ATTTGAGA-GAA
1 ATTTGAGAGGAA
*
46913861 ATTTG-GAAGAA
1 ATTTGAGAGGAA
46913872 ATTTGAGAGGAA
1 ATTTGAGAGGAA
46913884 ATTTGAGAG
1 ATTTGAGAG
46913893 AGGATTAGTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 2 0.07
11 13 0.45
12 14 0.48
ACGTcount: A:0.42, C:0.00, G:0.30, T:0.28
Consensus pattern (12 bp):
ATTTGAGAGGAA
Found at i:46915198 original size:9 final size:9
Alignment explanation
Indices: 46915138--46915293 Score: 68
Period size: 9 Copynumber: 16.4 Consensus size: 9
46915128 GACATGTGCC
*
46915138 AAAAATGAT
1 AAAAATTAT
46915147 AAAAA--AT
1 AAAAATTAT
*
46915154 AAAAATAAT
1 AAAAATTAT
46915163 AAAAATTATT
1 AAAAATTA-T
**
46915173 AAATTTTAAT
1 AAAAATT-AT
46915183 AAAAAATTAT
1 -AAAAATTAT
*
46915193 AAAAATTGTAA
1 AAAAA-T-TAT
46915204 AAAATATATAT
1 AAAA-AT-TAT
*
46915215 AAAAAATTGT
1 -AAAAATTAT
**
46915225 AAAGTTTTAT
1 AAA-AATTAT
*
46915235 AAAAATCAT
1 AAAAATTAT
46915244 AAAAATTAT
1 AAAAATTAT
46915253 -AAAATATAT
1 AAAAAT-TAT
*
46915262 AGAAA-TAT
1 AAAAATTAT
* *
46915270 AGAAATATAGA
1 AAAAAT-TA-T
46915281 AAAAATTAT
1 AAAAATTAT
46915290 AAAA
1 AAAA
46915294 CTTTATAAAT
Statistics
Matches: 112, Mismatches: 20, Indels: 30
0.69 0.12 0.19
Matches are distributed among these distances:
7 7 0.06
8 13 0.12
9 40 0.36
10 25 0.22
11 22 0.20
12 5 0.04
ACGTcount: A:0.65, C:0.01, G:0.04, T:0.30
Consensus pattern (9 bp):
AAAAATTAT
Found at i:46915198 original size:22 final size:22
Alignment explanation
Indices: 46915159--46915226 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
46915149 AAAATAAAAA
* *
46915159 TAAT-AAAAATTAT-TAAATTT
1 TAATAAAAAATTATAAAAATTG
46915179 TAATAAAAAATTATAAAAATTG
1 TAATAAAAAATTATAAAAATTG
*
46915201 TAA-AAAATATATATAAAAAATTG
1 TAATAAAAAAT-TAT-AAAAATTG
46915224 TAA
1 TAA
46915227 AGTTTTATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
20 4 0.10
21 15 0.37
22 11 0.27
23 11 0.27
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (22 bp):
TAATAAAAAATTATAAAAATTG
Found at i:46915269 original size:8 final size:8
Alignment explanation
Indices: 46915258--46915282 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
46915248 ATTATAAAAT
46915258 ATATAGAA
1 ATATAGAA
46915266 ATATAGAA
1 ATATAGAA
46915274 ATATAGAA
1 ATATAGAA
46915282 A
1 A
46915283 AAATTATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (8 bp):
ATATAGAA
Found at i:46915590 original size:9 final size:9
Alignment explanation
Indices: 46915566--46915687 Score: 52
Period size: 9 Copynumber: 12.8 Consensus size: 9
46915556 AAATTTTACC
46915566 ATTTTTATA
1 ATTTTTATA
* *
46915575 TTATTTTATG
1 AT-TTTTATA
46915585 ATTTTTATA
1 ATTTTTATA
*
46915594 ATTTTTTTTCTA
1 A---TTTTTATA
46915606 ATTTTTAATA
1 ATTTTT-ATA
*
46915616 TGTTTTTAT-
1 -ATTTTTATA
46915625 ATTTTTATTAA
1 ATTTTTA-T-A
* *
46915636 AATTTAATA
1 ATTTTTATA
46915645 ATTTTTATA
1 ATTTTTATA
** *
46915654 ACCTTTATTG
1 ATTTTTA-TA
46915664 ATTTTTAT-
1 ATTTTTATA
46915672 -TTTTTATAA
1 ATTTTTAT-A
46915681 ATTTTTA
1 ATTTTTA
46915688 CTACATGTCA
Statistics
Matches: 83, Mismatches: 17, Indels: 25
0.66 0.14 0.20
Matches are distributed among these distances:
7 7 0.08
8 6 0.07
9 28 0.34
10 24 0.29
11 10 0.12
12 8 0.10
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (9 bp):
ATTTTTATA
Found at i:46915600 original size:19 final size:19
Alignment explanation
Indices: 46915520--46915600 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 19
46915510 TTAAAGGGCA
*
46915520 TTTTTATGCA-TTTTATACT
1 TTTTTATG-ATTTTTATAAT
* *
46915539 TTTTTATGACTTTTATAAA
1 TTTTTATGATTTTTATAAT
* **
46915558 ATTTTACCATTTTTAT-AT
1 TTTTTATGATTTTTATAAT
46915576 TATTTTATGATTTTTATAAT
1 T-TTTTATGATTTTTATAAT
46915596 TTTTT
1 TTTTT
46915601 TTCTAATTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
18 2 0.04
19 44 0.90
20 3 0.06
ACGTcount: A:0.26, C:0.06, G:0.04, T:0.64
Consensus pattern (19 bp):
TTTTTATGATTTTTATAAT
Found at i:46919332 original size:40 final size:40
Alignment explanation
Indices: 46919265--46919367 Score: 113
Period size: 40 Copynumber: 2.6 Consensus size: 40
46919255 AGACTGACAT
* * * *
46919265 TGAACTGAATTATG-GAATACTGAATATTGTTTTGA-GTAC
1 TGAATTGAATTGTGAGATTACTGAATATTGTTAT-ATGTAC
46919304 TGAATTGAATTGTGA-AGTTACTGAATATTGTTATATGTAC
1 TGAATTGAATTGTGAGA-TTACTGAATATTGTTATATGTAC
* *
46919344 TGCATTGAGTTGTGAGATTACTGA
1 TGAATTGAATTGTGAGATTACTGA
46919368 GGTAATGAAT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
39 14 0.26
40 39 0.72
41 1 0.02
ACGTcount: A:0.31, C:0.07, G:0.22, T:0.40
Consensus pattern (40 bp):
TGAATTGAATTGTGAGATTACTGAATATTGTTATATGTAC
Found at i:46919615 original size:38 final size:39
Alignment explanation
Indices: 46919568--46919653 Score: 93
Period size: 38 Copynumber: 2.2 Consensus size: 39
46919558 ATATGCCGAC
* ** * *
46919568 TACTTTTACTATTACTGATTTGACAC-TTGTGTGTCGAA
1 TACTATTACTATTACCAATTCGACACTTTGTGTGTCAAA
* *
46919606 TACTATTACTCTTACCAATTCGGCACTTTGTGTGTCAAA
1 TACTATTACTATTACCAATTCGACACTTTGTGTGTCAAA
*
46919645 TACTGTTAC
1 TACTATTAC
46919654 CGTTATTGTT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
38 20 0.51
39 19 0.49
ACGTcount: A:0.24, C:0.20, G:0.14, T:0.42
Consensus pattern (39 bp):
TACTATTACTATTACCAATTCGACACTTTGTGTGTCAAA
Found at i:46919677 original size:45 final size:44
Alignment explanation
Indices: 46919612--46919825 Score: 215
Period size: 45 Copynumber: 4.9 Consensus size: 44
46919602 CGAATACTAT
* *
46919612 TACTCTTACCAATTCGGCACTTTGTGTGTCAAATACTGTTACCG
1 TACTGTTACCGATTCGGCACTTTGTGTGTCAAATACTGTTACCG
* * * * *
46919656 TTATTGTTACCGATTCAGCACTTTGTGTGTCGAATATTGTTACCAT
1 -TACTGTTACCGATTCGGCACTTTGTGTGTCAAATACTGTTACC-G
* *
46919702 TACTGTTGCCGATTCGGCACTTTGTGTGTCGAATACTG-T----
1 TACTGTTACCGATTCGGCACTTTGTGTGTCAAATACTGTTACCG
* * * *
46919741 TACTGTTACTGATTTGTCACTTTTTGTGT-AGAATACTGTTACCG
1 TACTGTTACCGATTCGGCACTTTGTGTGTCA-AATACTGTTACCG
* * *
46919785 TACTGTTACAGATTTGGCACTTTGTGTGTTAAATACTGTTA
1 TACTGTTACCGATTCGGCACTTTGTGTGTCAAATACTGTTA
46919826 TTGTTACTGT
Statistics
Matches: 141, Mismatches: 20, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
39 31 0.22
40 1 0.01
44 37 0.26
45 72 0.51
ACGTcount: A:0.21, C:0.18, G:0.19, T:0.42
Consensus pattern (44 bp):
TACTGTTACCGATTCGGCACTTTGTGTGTCAAATACTGTTACCG
Found at i:46919744 original size:39 final size:39
Alignment explanation
Indices: 46919568--46919832 Score: 172
Period size: 45 Copynumber: 6.4 Consensus size: 39
46919558 ATATGCCGAC
* * * * *
46919568 TACTTTTACTATTACTGATTTGACAC-TTGTGTGTCGAA
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
* * * *
46919606 TACTATTACTCTTACCAATTCGGCACTTTGTGTGTCAAA
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
*
46919645 TACTGTTACCGTTATTGTTACCGATTCAGCACTTTGTGTGTCGAA
1 TACTGTTA-C-----TGTTACCGATTCGGCACTTTGTGTGTCGAA
* *
46919690 TATTGTTACCATTACTGTTGCCGATTCGGCACTTTGTGTGTCGAA
1 TACTG------TTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
* * * * *
46919735 TACTGTTACTGTTACTGATTTGTCACTTTTTGTGTAGAA
1 TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
* * **
46919774 TACTGTTACCGTACTGTTACAGATTTGGCACTTTGTGTGTTAAA
1 TACTG-T----TACTGTTACCGATTCGGCACTTTGTGTGTCGAA
*
46919818 TACTGTTATTGTTAC
1 TACTGTTACTGTTAC
46919833 TGTTACTGCT
Statistics
Matches: 181, Mismatches: 28, Indels: 35
0.74 0.11 0.14
Matches are distributed among these distances:
38 20 0.11
39 59 0.33
40 2 0.01
43 1 0.01
44 33 0.18
45 62 0.34
50 1 0.01
51 3 0.02
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.43
Consensus pattern (39 bp):
TACTGTTACTGTTACCGATTCGGCACTTTGTGTGTCGAA
Found at i:46919823 original size:83 final size:84
Alignment explanation
Indices: 46919568--46919834 Score: 239
Period size: 83 Copynumber: 3.2 Consensus size: 84
46919558 ATATGCCGAC
* * * * *
46919568 TACTTTTACTATTACTGATTTGACAC-TTGTGTGTCGAATACTATTA-C--T-C--TTACCA-AT
1 TACTGTTACTGTTACTGATTTGTCACTTTGTGTGTAGAATACTGTTACCAGTACTGTTA-CAGAT
46919625 TCGGCACTTTGTGTGTCAAA
65 TCGGCACTTTGTGTGTCAAA
* * * * *
46919645 TACTGTTACCGTTATTGTTACCGATTCAG-CACTTTGTGTGTCGAATATTGTTACCATTACTGTT
1 TACTGTTA-C-----TGTTACTGATT-TGTCACTTTGTGTGTAGAATACTGTTACCAGTACTGTT
* * *
46919709 GCCGATTCGGCACTTTGTGTGTCGAA
59 ACAGATTCGGCACTTTGTGTGTCAAA
*
46919735 TACTGTTACTGTTACTGATTTGTCACTTTTTGTGTAGAATACTGTTACC-GTACTGTTACAGATT
1 TACTGTTACTGTTACTGATTTGTCACTTTGTGTGTAGAATACTGTTACCAGTACTGTTACAGATT
* *
46919799 TGGCACTTTGTGTGTTAAA
66 CGGCACTTTGTGTGTCAAA
*
46919818 TACTGTTATTGTTACTG
1 TACTGTTACTGTTACTG
46919835 TTACTGCTAC
Statistics
Matches: 153, Mismatches: 21, Indels: 26
0.76 0.10 0.13
Matches are distributed among these distances:
77 7 0.05
78 1 0.01
83 57 0.37
84 52 0.34
85 1 0.01
87 1 0.01
88 1 0.01
89 2 0.01
90 31 0.20
ACGTcount: A:0.21, C:0.18, G:0.18, T:0.43
Consensus pattern (84 bp):
TACTGTTACTGTTACTGATTTGTCACTTTGTGTGTAGAATACTGTTACCAGTACTGTTACAGATT
CGGCACTTTGTGTGTCAAA
Found at i:46922210 original size:19 final size:18
Alignment explanation
Indices: 46922188--46922232 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
46922178 ATTAACCATA
*
46922188 TATTTAGTTATTTATTTTT
1 TATTTAGTTAATT-TTTTT
*
46922207 TATTTAATTTAATTTTTTT
1 TATTT-AGTTAATTTTTTT
46922226 TATTTAG
1 TATTTAG
46922233 CTTTTCATGT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
18 1 0.05
19 15 0.68
20 6 0.27
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.71
Consensus pattern (18 bp):
TATTTAGTTAATTTTTTT
Found at i:46924482 original size:13 final size:13
Alignment explanation
Indices: 46924466--46924495 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
46924456 TCCATAAATC
46924466 CACAACATATTTT
1 CACAACATATTTT
*
46924479 CACAATATATTTT
1 CACAACATATTTT
46924492 CACA
1 CACA
46924496 TATAAATTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.00, T:0.37
Consensus pattern (13 bp):
CACAACATATTTT
Found at i:46931474 original size:35 final size:36
Alignment explanation
Indices: 46931429--46931497 Score: 122
Period size: 35 Copynumber: 1.9 Consensus size: 36
46931419 ATTTGTTAGA
46931429 TATTGATTATGTTTTAAGCTTGTTGAATATTGAATT
1 TATTGATTATGTTTTAAGCTTGTTGAATATTGAATT
*
46931465 TATT-ATTATGTTTTAAGCTTGTTGGATATTGAA
1 TATTGATTATGTTTTAAGCTTGTTGAATATTGAA
46931498 ATGATTGACA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 28 0.88
36 4 0.12
ACGTcount: A:0.28, C:0.03, G:0.17, T:0.52
Consensus pattern (36 bp):
TATTGATTATGTTTTAAGCTTGTTGAATATTGAATT
Found at i:46932796 original size:32 final size:33
Alignment explanation
Indices: 46932760--46932845 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 33
46932750 ACTTTTCCGA
* *
46932760 AAAATATTTT-CAGGAAATCAATCAAACAGCAG
1 AAAATATTTTACAGCAAATCAATCAAACACCAG
*
46932792 AAAATATTTTACA-CAGATTCAATCAAACACCAG
1 AAAATATTTTACAGCA-AATCAATCAAACACCAG
* *
46932825 AAAATATTTTCCAGTAAATCA
1 AAAATATTTTACAGCAAATCA
46932846 TTTTACAGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
32 11 0.24
33 33 0.73
34 1 0.02
ACGTcount: A:0.49, C:0.17, G:0.08, T:0.26
Consensus pattern (33 bp):
AAAATATTTTACAGCAAATCAATCAAACACCAG
Found at i:46932843 original size:14 final size:15
Alignment explanation
Indices: 46932821--46932897 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
46932811 CAATCAAACA
46932821 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
46932835 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
46932850 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
46932870 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
46932884 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
46932898 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:46932862 original size:20 final size:20
Alignment explanation
Indices: 46932837--46932876 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
46932827 AATATTTTCC
*
46932837 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
46932857 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
46932877 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:46932882 original size:34 final size:35
Alignment explanation
Indices: 46932825--46932891 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
46932815 CAAACACCAG
*
46932825 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
46932860 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
46932892 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:46932898 original size:14 final size:14
Alignment explanation
Indices: 46932860--46932899 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
46932850 ACAGAAAAGT
*
46932860 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
46932874 AAATCATTTTACGG
1 AAAACATTTTACAG
46932888 AAAACATTTTAC
1 AAAACATTTTAC
46932900 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:46933254 original size:17 final size:17
Alignment explanation
Indices: 46933224--46933257 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
46933214 TTTTATATTT
*
46933224 TATAAATATTATAATAA
1 TATAAATATAATAATAA
*
46933241 TATAATTATAATAATAA
1 TATAAATATAATAATAA
46933258 CATTATTTAC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TATAAATATAATAATAA
Found at i:46934432 original size:11 final size:11
Alignment explanation
Indices: 46934415--46934454 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
46934405 TAATAACTAT
46934415 AAAATAATAGC
1 AAAATAATAGC
*
46934426 AATATAATAGC
1 AAAATAATAGC
* *
46934437 AAAATAACAAC
1 AAAATAATAGC
46934448 AAAATAA
1 AAAATAA
46934455 CATCAAATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.68, C:0.10, G:0.05, T:0.17
Consensus pattern (11 bp):
AAAATAATAGC
Found at i:46934454 original size:22 final size:22
Alignment explanation
Indices: 46934415--46934472 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
46934405 TAATAACTAT
* * * *
46934415 AAAATAATAGCAATATAATAGC
1 AAAATAACAACAAAATAACAGC
*
46934437 AAAATAACAACAAAATAACATC
1 AAAATAACAACAAAATAACAGC
*
46934459 -AAATAACAATAAAA
1 AAAATAACAACAAAA
46934473 AAAAGAGTGT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.67, C:0.12, G:0.03, T:0.17
Consensus pattern (22 bp):
AAAATAACAACAAAATAACAGC
Found at i:46935898 original size:15 final size:17
Alignment explanation
Indices: 46935868--46935900 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
46935858 TGTTAGCACT
46935868 TAAAATATATTATATAG
1 TAAAATATATTATATAG
46935885 TAAAATA-ATATATATA
1 TAAAATATAT-TATATA
46935901 CAAAAAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (17 bp):
TAAAATATATTATATAG
Found at i:46936394 original size:9 final size:9
Alignment explanation
Indices: 46936380--46936407 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
46936370 TGAGTTTTCG
46936380 AATTCGAAT
1 AATTCGAAT
46936389 AATTCGAAT
1 AATTCGAAT
46936398 AATTCGAAT
1 AATTCGAAT
46936407 A
1 A
46936408 TCAAACTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.46, C:0.11, G:0.11, T:0.32
Consensus pattern (9 bp):
AATTCGAAT
Found at i:46938877 original size:14 final size:14
Alignment explanation
Indices: 46938858--46938884 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
46938848 CCGAAACTAG
46938858 AAAGAAAAAAAAAC
1 AAAGAAAAAAAAAC
46938872 AAAGAAAAAAAAA
1 AAAGAAAAAAAAA
46938885 TGCTCATCCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.89, C:0.04, G:0.07, T:0.00
Consensus pattern (14 bp):
AAAGAAAAAAAAAC
Found at i:46940057 original size:39 final size:40
Alignment explanation
Indices: 46939962--46940223 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
46939952 TTGAATGATG
*
46939962 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
46940000 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
46940041 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
46940080 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
46940119 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
46940158 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
46940197 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
46940224 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:46942132 original size:23 final size:24
Alignment explanation
Indices: 46942071--46942121 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
46942061 TTTATTTAAT
*
46942071 TTTAAA-TCTAATATTATTTTGGTG
1 TTTAAACT-TAATATTATTTTAGTG
46942095 TTTAAACTTAATATTATTTTAGT-
1 TTTAAACTTAATATTATTTTAGTG
46942118 TTTA
1 TTTA
46942122 TTATTAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 4 0.16
24 20 0.80
25 1 0.04
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.57
Consensus pattern (24 bp):
TTTAAACTTAATATTATTTTAGTG
Found at i:46942235 original size:69 final size:67
Alignment explanation
Indices: 46942152--46942320 Score: 171
Period size: 69 Copynumber: 2.4 Consensus size: 67
46942142 ATTGTACATT
* * * *
46942152 ATTATCTTAGATTTATCATGCATTATTATTTGTAATTTATCAATATTATTATTTTAAATTCATCA
1 ATTAT-TTAAATTTATCATGTATTATTATTT-AAATTTATCAATAATA-T-TTTTAAATTCATCA
46942217 T-TAAC
62 TATAAC
* *
46942222 ATTATTTAAATTTATCATGTA-TATTTATCTTAAATTTATCATTAATATTTTTAAATTTATCATA
1 ATTATTTAAATTTATCATGTATTA-TTAT-TTAAATTTATCAATAATATTTTTAAATTCATCATA
**
46942286 TATT
64 TAAC
* *
46942290 ATTATTTTGAATTTATCACGTATTATTATTT
1 ATTA-TTTAAATTTATCATGTATTATTATTT
46942321 TTAGAATTAT
Statistics
Matches: 84, Mismatches: 10, Indels: 12
0.79 0.09 0.11
Matches are distributed among these distances:
67 14 0.17
68 11 0.13
69 50 0.60
70 9 0.11
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (67 bp):
ATTATTTAAATTTATCATGTATTATTATTTAAATTTATCAATAATATTTTTAAATTCATCATATA
AC
Found at i:46942249 original size:13 final size:12
Alignment explanation
Indices: 46942205--46942271 Score: 61
Period size: 13 Copynumber: 5.7 Consensus size: 12
46942195 TATTATTATT
*
46942205 TTAAATTCATCA
1 TTAAATTTATCA
46942217 TTAACA-TTAT--
1 TTAA-ATTTATCA
46942227 TTAAATTTATCA
1 TTAAATTTATCA
*
46942239 TGTATATTTATC-
1 T-TAAATTTATCA
46942251 TTAAATTTATCA
1 TTAAATTTATCA
46942263 TTAATATTT
1 TTAA-ATTT
46942272 TTAAATTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
9 1 0.02
10 8 0.18
11 9 0.20
12 13 0.29
13 14 0.31
ACGTcount: A:0.37, C:0.09, G:0.01, T:0.52
Consensus pattern (12 bp):
TTAAATTTATCA
Found at i:46942275 original size:45 final size:46
Alignment explanation
Indices: 46942149--46942307 Score: 171
Period size: 45 Copynumber: 3.5 Consensus size: 46
46942139 TTTATTGTAC
* * * ** *
46942149 ATTATTATCTTAGATTTATCATGCATTATTATTTGTAATTTATCA-AT
1 ATTATTATTTTAAATTTATCAT-TAACATTATTT-AAATTTATCATAT
* *
46942196 ATTATTATTTTAAATTCATCATTAACATTATTTAAATTTATCATGT
1 ATTATTATTTTAAATTTATCATTAACATTATTTAAATTTATCATAT
* *
46942242 A-TATTTATCTTAAATTTATCATTAATATT-TTTAAATTTATCATAT
1 ATTA-TTATTTTAAATTTATCATTAACATTATTTAAATTTATCATAT
*
46942287 ATTATTATTTTGAATTTATCA
1 ATTATTATTTTAAATTTATCA
46942308 CGTATTATTA
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
45 42 0.44
46 34 0.36
47 19 0.20
ACGTcount: A:0.35, C:0.08, G:0.03, T:0.54
Consensus pattern (46 bp):
ATTATTATTTTAAATTTATCATTAACATTATTTAAATTTATCATAT
Found at i:46942345 original size:70 final size:68
Alignment explanation
Indices: 46942202--46942375 Score: 183
Period size: 70 Copynumber: 2.5 Consensus size: 68
46942192 CAATATTATT
* ** * *
46942202 ATTTTAAATTCATCATTAACATTA-TTTAAATTTATCATGTATATTTATCTTAAATTTATCATTA
1 ATTTTAAATTTATCATTATTATTATTTTAAATTTATCACGTATATTTATCTTAAATTTATCATCA
*
46942266 ATA
66 AAA
* * *
46942269 TTTTTAAATTTATCATATATTATTATTTTGAATTTATCACGTAT-TATTATTTTTAGAA-TTATC
1 ATTTTAAATTTATCAT-TATTATTATTTTAAATTTATCACGTATAT-TTA-TCTTA-AATTTATC
46942332 ATCAAAA
62 ATCAAAA
* *
46942339 ATTTTAAATTTATTATGTATTATTATTTCAAATTTAT
1 ATTTTAAATTTATCAT-TATTATTATTTTAAATTTAT
46942376 TATATATTGT
Statistics
Matches: 88, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
67 14 0.16
68 7 0.08
69 19 0.22
70 46 0.52
71 2 0.02
ACGTcount: A:0.37, C:0.07, G:0.03, T:0.53
Consensus pattern (68 bp):
ATTTTAAATTTATCATTATTATTATTTTAAATTTATCACGTATATTTATCTTAAATTTATCATCA
AAA
Found at i:46942378 original size:24 final size:23
Alignment explanation
Indices: 46942149--46942375 Score: 164
Period size: 24 Copynumber: 9.8 Consensus size: 23
46942139 TTTATTGTAC
* *
46942149 ATTATTATCTTAGATTTATCATGC
1 ATTATTAT-TTAAATTTATCATGT
* *
46942173 ATTATTATTTGTAATTTATCA-AT
1 ATTATTATTT-AAATTTATCATGT
*
46942196 ATTATTATTTTAAATTCATCAT-T
1 ATTATTA-TTTAAATTTATCATGT
**
46942219 AACATTATTTAAATTTATCATGT
1 ATTATTATTTAAATTTATCATGT
46942242 A-TATTTATCTTAAATTTATCAT-T
1 ATTA-TTAT-TTAAATTTATCATGT
* *
46942265 AATATT-TTTAAATTTATCATAT
1 ATTATTATTTAAATTTATCATGT
* *
46942287 ATTATTATTTTGAATTTATCACGT
1 ATTATTA-TTTAAATTTATCATGT
*
46942311 ATTATTATTTTTAGAA-TTATCAT-C
1 ATTATTA--TTTA-AATTTATCATGT
** * *
46942335 AAAAAT-TTTAAATTTATTATGT
1 ATTATTATTTAAATTTATCATGT
46942357 ATTATTATTTCAAATTTAT
1 ATTATTATTT-AAATTTAT
46942376 TATATATTGT
Statistics
Matches: 162, Mismatches: 25, Indels: 32
0.74 0.11 0.15
Matches are distributed among these distances:
20 2 0.01
21 23 0.14
22 24 0.15
23 36 0.22
24 65 0.40
25 10 0.06
26 2 0.01
ACGTcount: A:0.36, C:0.07, G:0.04, T:0.54
Consensus pattern (23 bp):
ATTATTATTTAAATTTATCATGT
Found at i:46942672 original size:12 final size:12
Alignment explanation
Indices: 46942644--46942675 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
46942634 TTACATGTAA
*
46942644 TTTTAAATGATT
1 TTTTTAATGATT
46942656 TTTTTAATGATT
1 TTTTTAATGATT
46942668 TTTTTAAT
1 TTTTTAAT
46942676 TTGTTTCATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (12 bp):
TTTTTAATGATT
Found at i:46943252 original size:13 final size:13
Alignment explanation
Indices: 46943234--46943259 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46943224 AAATCATTTA
46943234 GGTACCAATTTTG
1 GGTACCAATTTTG
46943247 GGTACCAATTTTG
1 GGTACCAATTTTG
46943260 TCATTCGACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.38
Consensus pattern (13 bp):
GGTACCAATTTTG
Found at i:46945619 original size:16 final size:16
Alignment explanation
Indices: 46945598--46945641 Score: 52
Period size: 16 Copynumber: 2.7 Consensus size: 16
46945588 ATGTGCAGAC
46945598 CCATGTTATATGCGAA
1 CCATGTTATATGCGAA
**
46945614 CCATGTCGTATGCGAA
1 CCATGTTATATGCGAA
*
46945630 CCTGTGTTATAT
1 CC-ATGTTATAT
46945642 ACTAACCCTG
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
16 16 0.73
17 6 0.27
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.34
Consensus pattern (16 bp):
CCATGTTATATGCGAA
Found at i:46945707 original size:17 final size:17
Alignment explanation
Indices: 46945681--46945758 Score: 57
Period size: 17 Copynumber: 4.6 Consensus size: 17
46945671 TGTTATAACC
*
46945681 ATGTGTGAACCCATAAT
1 ATGTGCGAACCCATAAT
**
46945698 ATGTGCGAACCCATACC
1 ATGTGCGAACCCATAAT
* * **
46945715 ATGTGAGAACTCATGTT
1 ATGTGCGAACCCATAAT
* * *
46945732 GTATGCGAACCCATGAT
1 ATGTGCGAACCCATAAT
*
46945749 ATATGCGAAC
1 ATGTGCGAAC
46945759 TTATGTTATA
Statistics
Matches: 47, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 47 1.00
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (17 bp):
ATGTGCGAACCCATAAT
Found at i:46945768 original size:17 final size:17
Alignment explanation
Indices: 46945721--46945770 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
46945711 TACCATGTGA
*
46945721 GAACTCATGTTGTATGC
1 GAACTCATGTTATATGC
* *
46945738 GAACCCATGATATATGC
1 GAACTCATGTTATATGC
*
46945755 GAACTTATGTTATATG
1 GAACTCATGTTATATG
46945771 TGAGCTACAA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (17 bp):
GAACTCATGTTATATGC
Found at i:46945912 original size:17 final size:18
Alignment explanation
Indices: 46945872--46945914 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
46945862 GTGAACTGTG
*
46945872 TTATATTATGCGAGCTCTA
1 TTATATTA-GCGAGCCCTA
*
46945891 CTATATTA-CGAGCCCTA
1 TTATATTAGCGAGCCCTA
46945908 TTATATT
1 TTATATT
46945915 GTGTACTATG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
17 14 0.67
19 7 0.33
ACGTcount: A:0.28, C:0.19, G:0.12, T:0.42
Consensus pattern (18 bp):
TTATATTAGCGAGCCCTA
Found at i:46947144 original size:18 final size:18
Alignment explanation
Indices: 46947121--46947157 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
46947111 GTCCAATTGA
46947121 GTAGATGCTTTGTCTTGG
1 GTAGATGCTTTGTCTTGG
46947139 GTAGATGCTTTGTCTTGG
1 GTAGATGCTTTGTCTTGG
46947157 G
1 G
46947158 CATCGAAGCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.11, G:0.35, T:0.43
Consensus pattern (18 bp):
GTAGATGCTTTGTCTTGG
Found at i:46957359 original size:23 final size:23
Alignment explanation
Indices: 46957308--46957352 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
46957298 GTGTTATTGA
46957308 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
46957331 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
46957353 ATTAGTGTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.18, C:0.22, G:0.27, T:0.33
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:46959084 original size:41 final size:39
Alignment explanation
Indices: 46958964--46959099 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 39
46958954 ACTAGTTTGG
*
46958964 CACCCAGTGCCTCATCGAATAATTCGAAGTAATAAATTGA
1 CACCCAGTGCCTCATCGAATAATCCGAAGTAAT-AATTGA
* * ** * *
46959004 CACCTAGTGTCTCATCGGCTAAACTGAAGT-A-AATTGA
1 CACCCAGTGCCTCATCGAATAATCCGAAGTAATAATTGA
46959041 CACCCAGTGCCTCATCGAATTAATCCGAAGTAAATAATTGA
1 CACCCAGTGCCTCATCGAA-TAATCCGAAGT-AATAATTGA
* *
46959082 CACACAGTGTCTCATCGA
1 CACCCAGTGCCTCATCGA
46959100 CTCGAAGTCG
Statistics
Matches: 77, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
37 21 0.27
38 9 0.12
39 1 0.01
40 24 0.31
41 22 0.29
ACGTcount: A:0.35, C:0.24, G:0.16, T:0.25
Consensus pattern (39 bp):
CACCCAGTGCCTCATCGAATAATCCGAAGTAATAATTGA
Found at i:46959908 original size:10 final size:10
Alignment explanation
Indices: 46959885--46959950 Score: 53
Period size: 10 Copynumber: 6.2 Consensus size: 10
46959875 TAGTTTTTCC
46959885 TTTCTTTC-T
1 TTTCTTTCTT
46959894 TTTCTTTCTT
1 TTTCTTTCTT
*
46959904 TTTCTTTCTA
1 TTTCTTTCTT
46959914 TTTCGTTTAACCTT
1 TTTC-TTT---CTT
*
46959928 CTATCTTTCTT
1 -TTTCTTTCTT
*
46959939 TTTGTTTCTT
1 TTTCTTTCTT
46959949 TT
1 TT
46959951 ATTTATTATA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
9 8 0.17
10 24 0.52
11 6 0.13
14 5 0.11
15 3 0.07
ACGTcount: A:0.06, C:0.20, G:0.03, T:0.71
Consensus pattern (10 bp):
TTTCTTTCTT
Found at i:46960000 original size:26 final size:26
Alignment explanation
Indices: 46959949--46960014 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 26
46959939 TTTGTTTCTT
* *
46959949 TTAT-TTAT-TATATTTACTTTATTA
1 TTATATTATATATATTTACTTAAATA
46959973 TTATATTATATATATTTACTTAAATA
1 TTATATTATATATATTTACTTAAATA
*
46959999 TTA-AGTAATATATATT
1 TTATA-TTATATATATT
46960015 ATAATAAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 4 0.11
25 5 0.14
26 27 0.75
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.58
Consensus pattern (26 bp):
TTATATTATATATATTTACTTAAATA
Found at i:46961837 original size:53 final size:52
Alignment explanation
Indices: 46961754--46961878 Score: 151
Period size: 53 Copynumber: 2.4 Consensus size: 52
46961744 GGCGCTGAAG
* * * * * *
46961754 GACCATATCATGTATGACCATAATTGGTGGGCTATAACTTCATTTGGAAAGAA
1 GACCATATCGTGTAAGA-CATAACTGGTGGGCTATAACATCATATAGAAAGAA
* *
46961807 GACCATATCGTGTAAGACAGTAACTGGTGGGTTATGACATCATATAGAAAGAA
1 GACCATATCGTGTAAGACA-TAACTGGTGGGCTATAACATCATATAGAAAGAA
*
46961860 GAACATATCGTGTAAGACA
1 GACCATATCGTGTAAGACA
46961879 CATTTATGGC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
52 2 0.03
53 60 0.97
ACGTcount: A:0.37, C:0.14, G:0.22, T:0.26
Consensus pattern (52 bp):
GACCATATCGTGTAAGACATAACTGGTGGGCTATAACATCATATAGAAAGAA
Found at i:46965884 original size:30 final size:30
Alignment explanation
Indices: 46965848--46965911 Score: 119
Period size: 30 Copynumber: 2.1 Consensus size: 30
46965838 AATTTAAGGG
46965848 ACATAATTTCCTAACTGGGGGAGAGTTGTA
1 ACATAATTTCCTAACTGGGGGAGAGTTGTA
*
46965878 ACATAATTTCCTAAGTGGGGGAGAGTTGTA
1 ACATAATTTCCTAACTGGGGGAGAGTTGTA
46965908 ACAT
1 ACAT
46965912 CTCGTCCGAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (30 bp):
ACATAATTTCCTAACTGGGGGAGAGTTGTA
Found at i:46967424 original size:27 final size:29
Alignment explanation
Indices: 46967386--46967463 Score: 76
Period size: 27 Copynumber: 2.8 Consensus size: 29
46967376 CTGGAAGGGT
*
46967386 AAGCCTTCGTGGTGAAG-CTCTT-AAAGG-
1 AAGCCTTTGTGGTGAAGACT-TTAAAAGGA
* *
46967413 ATGCCTTTGTGGCG-AGACTTTAAAAGGA
1 AAGCCTTTGTGGTGAAGACTTTAAAAGGA
46967441 AAGCCTTTGTGGTG-AGTACTTTA
1 AAGCCTTTGTGGTGAAG-ACTTTA
46967464 TGAAAAGGAT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
26 4 0.10
27 18 0.43
28 14 0.33
29 6 0.14
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (29 bp):
AAGCCTTTGTGGTGAAGACTTTAAAAGGA
Done.