Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 159 of 182
Found at i:48904309 original size:14 final size:15
Alignment explanation
Indices: 48904280--48904319 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
48904270 TTAATTTATG
48904280 AAGTTACAAA-TCGT
1 AAGTTACAAACTCGT
48904294 AAGTTACAAACT-GT
1 AAGTTACAAACTCGT
48904308 AAGCTT-CAAACT
1 AAG-TTACAAACT
48904320 ATGCATATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 21 0.88
15 3 0.12
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.28
Consensus pattern (15 bp):
AAGTTACAAACTCGT
Found at i:48906790 original size:54 final size:54
Alignment explanation
Indices: 48906725--48906828 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 54
48906715 GTCCATTAGG
* * * * *
48906725 ATAGTCAACACAGGGTAGTCCATCGGGACAATAAACACGGGGTAGTCTGTTGAA
1 ATAGTAAACACAAGGTAGACCATCGAGACAATAAACACAGGGTAGTCTGTTGAA
* * *
48906779 ATAGTAAACACAAGGTAGACTATCGAGACAGTAAACATAGGGTAGTCTGT
1 ATAGTAAACACAAGGTAGACCATCGAGACAATAAACACAGGGTAGTCTGT
48906829 CGTGACAGTA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 42 1.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (54 bp):
ATAGTAAACACAAGGTAGACCATCGAGACAATAAACACAGGGTAGTCTGTTGAA
Found at i:48906835 original size:27 final size:27
Alignment explanation
Indices: 48906731--48906843 Score: 100
Period size: 27 Copynumber: 4.2 Consensus size: 27
48906721 TAGGATAGTC
* * *
48906731 AACACAGGGTAGTCCATCGGGACAATA
1 AACACAGGGTAGTCTATCGAGACAGTA
* * * * *
48906758 AACACGGGGTAGTCTGTTGAAATAGTA
1 AACACAGGGTAGTCTATCGAGACAGTA
* *
48906785 AACACAAGGTAGACTATCGAGACAGTA
1 AACACAGGGTAGTCTATCGAGACAGTA
* * *
48906812 AACATAGGGTAGTCTGTCGTGACAGTA
1 AACACAGGGTAGTCTATCGAGACAGTA
*
48906839 TACAC
1 AACAC
48906844 GGTGACGTCT
Statistics
Matches: 64, Mismatches: 22, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (27 bp):
AACACAGGGTAGTCTATCGAGACAGTA
Found at i:48915034 original size:28 final size:30
Alignment explanation
Indices: 48914998--48915072 Score: 91
Period size: 33 Copynumber: 2.4 Consensus size: 30
48914988 TAATCTTTAA
*
48914998 CTTTGTCTT-AGT-TTTCTCGTAATACAAC
1 CTTTTTCTTAAGTATTTCTCGTAATACAAC
48915026 CTTTTTCTTTAAGTGAATTTCTCGTAATACAAC
1 CTTTTTC-TTAAGT--ATTTCTCGTAATACAAC
48915059 CTTTTTCTTTAAGT
1 CTTTTTC-TTAAGT
48915073 GAACCTTTGG
Statistics
Matches: 41, Mismatches: 1, Indels: 5
0.87 0.02 0.11
Matches are distributed among these distances:
28 6 0.15
29 2 0.05
30 3 0.07
33 30 0.73
ACGTcount: A:0.23, C:0.19, G:0.09, T:0.49
Consensus pattern (30 bp):
CTTTTTCTTAAGTATTTCTCGTAATACAAC
Found at i:48915047 original size:33 final size:33
Alignment explanation
Indices: 48915010--48915075 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
48915000 TTGTCTTAGT
48915010 TTTCTCGTAATACAACCTTTTTCTTTAAGTGAA
1 TTTCTCGTAATACAACCTTTTTCTTTAAGTGAA
48915043 TTTCTCGTAATACAACCTTTTTCTTTAAGTGAA
1 TTTCTCGTAATACAACCTTTTTCTTTAAGTGAA
48915076 CCTTTGGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.27, C:0.18, G:0.09, T:0.45
Consensus pattern (33 bp):
TTTCTCGTAATACAACCTTTTTCTTTAAGTGAA
Found at i:48915079 original size:18 final size:18
Alignment explanation
Indices: 48915023--48915080 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
48915013 CTCGTAATAC
48915023 AACCTTTTTCTTTAAGTG
1 AACCTTTTTCTTTAAGTG
* * *
48915041 AA--TTTCTC-GTAA-TAC
1 AACCTTTTTCTTTAAGT-G
48915056 AACCTTTTTCTTTAAGTG
1 AACCTTTTTCTTTAAGTG
48915074 AACCTTT
1 AACCTTT
48915081 GGAACACCCC
Statistics
Matches: 29, Mismatches: 6, Indels: 10
0.64 0.13 0.22
Matches are distributed among these distances:
14 1 0.03
15 5 0.17
16 5 0.17
17 5 0.17
18 12 0.41
19 1 0.03
ACGTcount: A:0.26, C:0.19, G:0.09, T:0.47
Consensus pattern (18 bp):
AACCTTTTTCTTTAAGTG
Found at i:48923657 original size:83 final size:83
Alignment explanation
Indices: 48923530--48923685 Score: 267
Period size: 83 Copynumber: 1.9 Consensus size: 83
48923520 GTAACGCGTA
* *
48923530 GGTTTGTGCAAGTGTAAACAGTCGTTATCAAGTAATAAGTAAGTATCGAGTTATCGTCTCCACAA
1 GGTTTGTGCAAGTGTAAACAGTCATCATCAAGTAATAAGTAAGTATCGAGTTATCGTCTCCACAA
48923595 GGATTGTTGTAATGATGG
66 GGATTGTTGTAATGATGG
* * *
48923613 GGTTTGTGCAAGTGTACACAGTCATCATCAAGTAATAAGTAAGTATTGAGTTATCGTCTCCACAG
1 GGTTTGTGCAAGTGTAAACAGTCATCATCAAGTAATAAGTAAGTATCGAGTTATCGTCTCCACAA
48923678 GGATTGTT
66 GGATTGTT
48923686 TTTGTGCTAA
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
83 68 1.00
ACGTcount: A:0.29, C:0.13, G:0.24, T:0.33
Consensus pattern (83 bp):
GGTTTGTGCAAGTGTAAACAGTCATCATCAAGTAATAAGTAAGTATCGAGTTATCGTCTCCACAA
GGATTGTTGTAATGATGG
Found at i:48927398 original size:38 final size:38
Alignment explanation
Indices: 48927347--48927442 Score: 174
Period size: 38 Copynumber: 2.5 Consensus size: 38
48927337 TATCCAATAT
48927347 ATAAGCTCGTAGAGGAGCTCACATAGAATACTTATCAC
1 ATAAGCTCGTAGAGGAGCTCACATAGAATACTTATCAC
*
48927385 ATAAGCTCGTAGAGGAGCTCATATAGAATACTTATCAC
1 ATAAGCTCGTAGAGGAGCTCACATAGAATACTTATCAC
*
48927423 ATAGGCTCGTAGAGGAGCTC
1 ATAAGCTCGTAGAGGAGCTC
48927443 GTACAAAATA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 56 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (38 bp):
ATAAGCTCGTAGAGGAGCTCACATAGAATACTTATCAC
Found at i:48927453 original size:38 final size:37
Alignment explanation
Indices: 48927347--48927457 Score: 152
Period size: 38 Copynumber: 2.9 Consensus size: 37
48927337 TATCCAATAT
48927347 ATAAGCTCGTAGAGGAGCTC-ACATAGAATACTTATCAC
1 ATAAGCTCGTAGAGGAGCTCTACA-A-AATACTTATCAC
* *
48927385 ATAAGCTCGTAGAGGAGCTCATATAGAATACTTATCAC
1 ATAAGCTCGTAGAGGAGCTC-TACAAAATACTTATCAC
*
48927423 ATAGGCTCGTAGAGGAGCTCGTACAAAATACTTAT
1 ATAAGCTCGTAGAGGAGCTC-TACAAAATACTTAT
48927458 TAGTTTCAGC
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
38 63 0.97
40 2 0.03
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (37 bp):
ATAAGCTCGTAGAGGAGCTCTACAAAATACTTATCAC
Found at i:48933662 original size:38 final size:37
Alignment explanation
Indices: 48933609--48933706 Score: 115
Period size: 38 Copynumber: 2.6 Consensus size: 37
48933599 AAATCCTTGG
* *
48933609 TATAATTATTGTAATTATAATTTATGATTGAATATTAT
1 TATAATTA-TGTAATTATAATTTATGATTAAAAATTAT
* * * *
48933647 TATAATTACTATAATTGTAATTTTTGGTTAAAAATTAT
1 TATAATTA-TGTAATTATAATTTATGATTAAAAATTAT
48933685 TATAATTATGGTAATTATAATT
1 TATAATTAT-GTAATTATAATT
48933707 ATTATATTTG
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
37 1 0.02
38 49 0.98
ACGTcount: A:0.40, C:0.01, G:0.08, T:0.51
Consensus pattern (37 bp):
TATAATTATGTAATTATAATTTATGATTAAAAATTAT
Found at i:48954553 original size:44 final size:44
Alignment explanation
Indices: 48954505--48954733 Score: 171
Period size: 44 Copynumber: 5.3 Consensus size: 44
48954495 CCATTGCAGT
* *
48954505 TTCAGGGAGATAGGATTAATAGCTTCAATCTGCTTCGCTGCAAC
1 TTCAGGGAGATAGGATTGATAGCTTCAATCTGCTTCACTGCAAC
* * * * *
48954549 TTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAAC
1 TTCAGGGAGATAGGATTGATAGCTTCAATCTGCTTCACTGCAAC
* * * *
48954593 TCCAGGGAGATAAGGCTTGAT-G---CGATTTGC-TCTACTGCAAC
1 TTCAGGGAGAT-AGGATTGATAGCTTCAATCTGCTTC-ACTGCAAC
* * * * * * *
48954634 TTCAGAGAGATAAGATTCATGGTTTTAATCTGCTTTACTGCAAC
1 TTCAGGGAGATAGGATTGATAGCTTCAATCTGCTTCACTGCAAC
* * ** ** * *
48954678 TTCATGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGTAAC
1 TTCAGGGAGATAGGATTGATAGCTTCAATCTGCTTCACTGCAAC
48954722 TTCAGGGAGATA
1 TTCAGGGAGATA
48954734 AGACTGGATG
Statistics
Matches: 138, Mismatches: 40, Indels: 14
0.72 0.21 0.07
Matches are distributed among these distances:
40 7 0.05
41 22 0.16
44 101 0.73
45 8 0.06
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (44 bp):
TTCAGGGAGATAGGATTGATAGCTTCAATCTGCTTCACTGCAAC
Found at i:48954735 original size:129 final size:129
Alignment explanation
Indices: 48954531--48954811 Score: 379
Period size: 129 Copynumber: 2.2 Consensus size: 129
48954521 TAATAGCTTC
*
48954531 AATCTGCTTCGCTGCAACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCC
1 AATCTGCTTCACTGCAACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCC
* * *
48954596 AGGGAGATAAGGCTTGATGCGATTTGCTCTACTGCAACTTCAGAGAGATAAGATTCATGGTTTT
66 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCATGGTTTT
* * * *** * *
48954660 AATCTGCTTTACTGCAACTTCATGGAGATAGGATTGGTTTCTTCTGTCTGCTCCACTGTAACTTC
1 AATCTGCTTCACTGCAACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCC
*
48954725 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTTAGAGAGATAAGA-TC-TGCAGTTT
66 AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCATG--GTTT
48954788 T
129 T
* * *
48954789 GA-CTGCCTCTCTGCAACTTCAGG
1 AATCTGCTTCACTGCAACTTCAGG
48954812 AACTTCATGG
Statistics
Matches: 132, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
127 2 0.02
128 19 0.14
129 111 0.84
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (129 bp):
AATCTGCTTCACTGCAACTTCAGGGAGATAGGATTGGTATCTTCAACCTGCTCCACTGAAACTCC
AGGGAGATAAGACTGGATGCGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTCATGGTTTT
Found at i:48955177 original size:90 final size:91
Alignment explanation
Indices: 48954940--48955197 Score: 346
Period size: 89 Copynumber: 2.9 Consensus size: 91
48954930 AACCTACTCC
* * * *
48954940 ACTGCAAACTCAGAGAGGCGAGGCTGATGTTTTCGATCCGCTTCACTGCCAATACAGGAAGACAA
1 ACTGCAAACTCAGAGAGGCGAGGCTGGTGTCTTCGATCTGCTTCACTGCAAATACAGGAAGACAA
*
48955005 GACCTGCTATCTTCAGTCTGTCCCGT
66 GATCTGCTATCTTCAGTCTGTCCCGT
* * * *
48955031 --TGCAAACTCA-AGGAGGCAAGGCTGGTGTCTTCAATCTACTTCACTGCTAATACAGGAAGACA
1 ACTGCAAACTCAGA-GAGGCGAGGCTGGTGTCTTCGATCTGCTTCACTGCAAATACAGGAAGACA
* *
48955093 AGATCTGCCATCTTCAGTCTGTTCC-T
65 AGATCTGCTATCTTCAGTCTGTCCCGT
* *
48955119 ACTGCAAACTTAGAGAGGCGAGGCTGGTGTCTTCGATCTGCTTCGCTGCAAACT-CAGGAAGACA
1 ACTGCAAACTCAGAGAGGCGAGGCTGGTGTCTTCGATCTGCTTCACTGCAAA-TACAGGAAGACA
48955183 AGATCTGCTATCTTC
65 AGATCTGCTATCTTC
48955198 GATCTACTTC
Statistics
Matches: 145, Mismatches: 17, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
88 2 0.01
89 75 0.52
90 66 0.46
91 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.26
Consensus pattern (91 bp):
ACTGCAAACTCAGAGAGGCGAGGCTGGTGTCTTCGATCTGCTTCACTGCAAATACAGGAAGACAA
GATCTGCTATCTTCAGTCTGTCCCGT
Found at i:48955201 original size:45 final size:45
Alignment explanation
Indices: 48954971--48955234 Score: 138
Period size: 45 Copynumber: 5.9 Consensus size: 45
48954961 GGCTGATGTT
* * *
48954971 TTCGATCCGCTTCACTGCCAATACAGGAAGACAAGACCTGCTATC
1 TTCGATCTGCTTCACTGCAAATACAGGAAGACAAGATCTGCTATC
* * * * *
48955016 TTC-AGTCTG--TCCCGTTGCAAACT-CAAGG-AGGCAAG-GCTGGTGTC
1 TTCGA-TCTGCTTCAC--TGCAAA-TAC-AGGAAGACAAGATCTGCTATC
* * * *
48955060 TTCAATCTACTTCACTGCTAATACAGGAAGACAAGATCTGCCATC
1 TTCGATCTGCTTCACTGCAAATACAGGAAGACAAGATCTGCTATC
* * * * * *
48955105 TTC-AGTCTG-TTCCTACTGCAAACT-TA-GAGAGGCGAG-GCTGGTGTC
1 TTCGA-TCTGCTT-C-ACTGCAAA-TACAGGA-AGACAAGATCTGCTATC
*
48955150 TTCGATCTGCTTCGCTGCAAACT-CAGGAAGACAAGATCTGCTATC
1 TTCGATCTGCTTCACTGCAAA-TACAGGAAGACAAGATCTGCTATC
* * * *
48955195 TTCGATCTACTTCATTGCCAATACAGGAAGATAAGATCTG
1 TTCGATCTGCTTCACTGCAAATACAGGAAGACAAGATCTG
48955235 TTGTTTTTAG
Statistics
Matches: 162, Mismatches: 36, Indels: 42
0.68 0.15 0.17
Matches are distributed among these distances:
43 7 0.04
44 44 0.27
45 87 0.54
46 23 0.14
47 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (45 bp):
TTCGATCTGCTTCACTGCAAATACAGGAAGACAAGATCTGCTATC
Found at i:48968606 original size:15 final size:16
Alignment explanation
Indices: 48968574--48968607 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
48968564 TGGGCTAGAC
*
48968574 TTTGGGTTTTGGTCTA
1 TTTGGGTTTGGGTCTA
48968590 TTTGGGTTTGGGT-TA
1 TTTGGGTTTGGGTCTA
48968605 TTT
1 TTT
48968608 TATTTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.06, C:0.03, G:0.32, T:0.59
Consensus pattern (16 bp):
TTTGGGTTTGGGTCTA
Found at i:48969310 original size:9 final size:10
Alignment explanation
Indices: 48969296--48969327 Score: 50
Period size: 9 Copynumber: 3.4 Consensus size: 10
48969286 AAGTAAAATG
48969296 AAATTAA-TA
1 AAATTAATTA
48969305 AAATTAATTA
1 AAATTAATTA
48969315 AAA-TAATTA
1 AAATTAATTA
48969324 AAAT
1 AAAT
48969328 AAATATGATA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
9 16 0.76
10 5 0.24
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (10 bp):
AAATTAATTA
Found at i:48969751 original size:17 final size:17
Alignment explanation
Indices: 48969731--48969825 Score: 54
Period size: 17 Copynumber: 5.6 Consensus size: 17
48969721 TTTTAGTAGT
48969731 TTTAATATTAAATATAA
1 TTTAATATTAAATATAA
* *
48969748 TTTAATATT-TATCTTAA
1 TTTAATATTAAAT-ATAA
* **
48969765 --TAGTATTTTAT-TAA
1 TTTAATATTAAATATAA
* *
48969779 TTTAATATTAAGGTGATTA
1 TTTAATATTAA-AT-ATAA
*
48969798 TCTTAATATTAAATTTAA
1 T-TTAATATTAAATATAA
48969816 TTTAATATTA
1 TTTAATATTA
48969826 TATTGTAGAT
Statistics
Matches: 59, Mismatches: 11, Indels: 16
0.69 0.13 0.19
Matches are distributed among these distances:
14 3 0.05
15 6 0.10
16 11 0.19
17 22 0.37
18 3 0.05
19 4 0.07
20 10 0.17
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (17 bp):
TTTAATATTAAATATAA
Found at i:48969864 original size:60 final size:58
Alignment explanation
Indices: 48969800--48969915 Score: 171
Period size: 58 Copynumber: 2.0 Consensus size: 58
48969790 GGTGATTATC
* *
48969800 TTAATATTAAATTTAATTTAATA-TTATATTGTAGATAAGTATTCTATTAATTTAATATAT
1 TTAATATTAAATTTAATCTAATATTTATA-T-T-GATAAGTATTATATTAATTTAATATAT
*
48969860 TTAATATTAAATTTAATCTAATATTTATATTGATAAGTATTATATTATTTTAATAT
1 TTAATATTAAATTTAATCTAATATTTATATTGATAAGTATTATATTAATTTAATAT
48969916 TAAAGTTATT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
58 23 0.44
59 1 0.02
60 23 0.44
61 5 0.10
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.53
Consensus pattern (58 bp):
TTAATATTAAATTTAATCTAATATTTATATTGATAAGTATTATATTAATTTAATATAT
Found at i:48975062 original size:10 final size:10
Alignment explanation
Indices: 48975034--48975066 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
48975024 GTTTTAGATT
48975034 TAGTTTTCTC
1 TAGTTTTCTC
48975044 TAGGTTTTCTC
1 TA-GTTTTCTC
48975055 TAGTTTTCTC
1 TAGTTTTCTC
48975065 TA
1 TA
48975067 CACTTTTCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.12, C:0.18, G:0.12, T:0.58
Consensus pattern (10 bp):
TAGTTTTCTC
Found at i:48979887 original size:16 final size:16
Alignment explanation
Indices: 48979866--48979930 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
48979856 ATCTCATAAT
48979866 CATTTCTCATATTTTC
1 CATTTCTCATATTTTC
*
48979882 CATTTC-AATATTTTC
1 CATTTCTCATATTTTC
48979897 TCA--TCTCATA--TT-
1 -CATTTCTCATATTTTC
* *
48979909 CATTTCTCATCTTTGC
1 CATTTCTCATATTTTC
48979925 CATTTC
1 CATTTC
48979931 AATATCAATC
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
11 2 0.05
13 8 0.21
14 2 0.05
15 12 0.32
16 14 0.37
ACGTcount: A:0.20, C:0.26, G:0.02, T:0.52
Consensus pattern (16 bp):
CATTTCTCATATTTTC
Found at i:48979899 original size:43 final size:43
Alignment explanation
Indices: 48979850--48979935 Score: 145
Period size: 43 Copynumber: 2.0 Consensus size: 43
48979840 TCATATTTCA
*
48979850 TTTCTCATCTCATAATCATTTCTCATATTTTCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
* *
48979893 TTTCTCATCTCATATTCATTTCTCATCTTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
48979936 CAATCACACC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.23, C:0.24, G:0.01, T:0.51
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
Found at i:48979907 original size:15 final size:14
Alignment explanation
Indices: 48979870--48979908 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 14
48979860 CATAATCATT
48979870 TCTCATATTTTCCA
1 TCTCATATTTTCCA
*
48979884 TTTCAATATTTTCTCA
1 TCTC-ATATTTTC-CA
48979900 TCTCATATT
1 TCTCATATT
48979909 CATTTCTCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
14 3 0.14
15 13 0.62
16 5 0.24
ACGTcount: A:0.23, C:0.23, G:0.00, T:0.54
Consensus pattern (14 bp):
TCTCATATTTTCCA
Found at i:48981094 original size:19 final size:19
Alignment explanation
Indices: 48981058--48981097 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
48981048 TGTCGAGAGC
*
48981058 TTCTTCTTCCTTTCTTTCT
1 TTCTTCTTCCTTTATTTCT
48981077 TTCTT-TTCCTTTTATTTCT
1 TTCTTCTTCC-TTTATTTCT
48981096 TT
1 TT
48981098 TCTAATTTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 15 0.79
ACGTcount: A:0.03, C:0.25, G:0.00, T:0.72
Consensus pattern (19 bp):
TTCTTCTTCCTTTATTTCT
Found at i:48981173 original size:19 final size:20
Alignment explanation
Indices: 48981139--48981189 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
48981129 TATCTTTCTT
* * *
48981139 TTATTATACATTCATTTAA-
1 TTATTATATATACATTAAAG
48981158 TTATTATATATACATTAAAG
1 TTATTATATATACATTAAAG
*
48981178 TTAATATATATA
1 TTATTATATATA
48981190 ACATATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.43, C:0.06, G:0.02, T:0.49
Consensus pattern (20 bp):
TTATTATATATACATTAAAG
Found at i:48987913 original size:49 final size:51
Alignment explanation
Indices: 48987856--48988006 Score: 162
Period size: 49 Copynumber: 3.0 Consensus size: 51
48987846 AAGGTAGAAG
* *
48987856 CAGTGGCAGTATATCTGCAAATTAGTGGTGGCTTGTCCATAAAT-T-TTAT
1 CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCAAAAATGTGTTAT
* * * * *
48987905 CAGTGGCAGTATACCTGCATATCAGTGGTGGCTGGTCTACAAATGTGTTAT
1 CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCAAAAATGTGTTAT
* * * * * *
48987956 TAGTTGTAGTTTATCTACAAATCAATGGTGGCTTGTCCAAAAATGGTGTTA
1 CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCAAAAAT-GTGTTA
48988007 CGAATGGATA
Statistics
Matches: 82, Mismatches: 17, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
49 38 0.46
50 1 0.01
51 37 0.45
52 6 0.07
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (51 bp):
CAGTGGCAGTATATCTGCAAATCAGTGGTGGCTTGTCCAAAAATGTGTTAT
Found at i:48993867 original size:27 final size:27
Alignment explanation
Indices: 48993835--48994102 Score: 188
Period size: 27 Copynumber: 10.0 Consensus size: 27
48993825 AACCACCTTG
**
48993835 GCGAGCTTGGCTCGCTGAAACATATTC
1 GCGAGCTTGGCTCGCCAAAACATATTC
* * *
48993862 GCGAGCTTGGCTCGCCAAAAGACATTT
1 GCGAGCTTGGCTCGCCAAAACATATTC
* * * * *
48993889 GCAAGCATGGCTTGCTAAAACATATTT
1 GCGAGCTTGGCTCGCCAAAACATATTC
* *
48993916 GTGAGCATGGCTCGCCAAAACATA-TC
1 GCGAGCTTGGCTCGCCAAAACATATTC
* * *
48993942 TGCAAGCTTGGCTCGCCAAAATATA-CC
1 -GCGAGCTTGGCTCGCCAAAACATATTC
* *
48993969 TGCGATCTTGGCTCGCCAAAGCATA-TC
1 -GCGAGCTTGGCTCGCCAAAACATATTC
* * * * *
48993996 TACGAGCATAGCTCGTCAAAACATATTT
1 -GCGAGCTTGGCTCGCCAAAACATATTC
** *
48994024 ATGACCTTGGCTCGCCAAAACATA-TC
1 GCGAGCTTGGCTCGCCAAAACATATTC
*
48994050 TGCGAGCTTGGCTCGCCAAAGCATA-TC
1 -GCGAGCTTGGCTCGCCAAAACATATTC
* * *
48994077 TGTGAGCATGGCTCGTCAAAA-ATATT
1 -GCGAGCTTGGCTCGCCAAAACATATT
48994103 TACCTCTCAT
Statistics
Matches: 190, Mismatches: 47, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
26 5 0.03
27 184 0.97
28 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.25
Consensus pattern (27 bp):
GCGAGCTTGGCTCGCCAAAACATATTC
Found at i:48993981 original size:81 final size:80
Alignment explanation
Indices: 48993837--48994102 Score: 282
Period size: 81 Copynumber: 3.3 Consensus size: 80
48993827 CCACCTTGGC
* ** * * * * * *
48993837 GAGCTTGGCTCGCTGAAACATATTCGCGAGCTTGGCTCGCCAAAAGACATTTGCAAGCATGGCTT
1 GAGCATGGCTCGCCAAAACATATT-GCGAGCTTGGCTCGCCAAAACATATCTGCGAGCTTGGCTC
* * *
48993902 GCTAAAACATATTTGT
65 GCCAAAGCATATCTGT
* * * *
48993918 GAGCATGGCTCGCCAAAACATATCTGCAAGCTTGGCTCGCCAAAATATACCTGCGATCTTGGCTC
1 GAGCATGGCTCGCCAAAACATAT-TGCGAGCTTGGCTCGCCAAAACATATCTGCGAGCTTGGCTC
**
48993983 GCCAAAGCATATCTAC
65 GCCAAAGCATATCTGT
* * ** *
48993999 GAGCATAGCTCGTCAAAACATATTTATGACCTTGGCTCGCCAAAACATATCTGCGAGCTTGGCTC
1 GAGCATGGCTCGCCAAAACATA-TTGCGAGCTTGGCTCGCCAAAACATATCTGCGAGCTTGGCTC
48994064 GCCAAAGCATATCTGT
65 GCCAAAGCATATCTGT
*
48994080 GAGCATGGCTCGTCAAAA-ATATT
1 GAGCATGGCTCGCCAAAACATATT
48994103 TACCTCTCAT
Statistics
Matches: 154, Mismatches: 29, Indels: 6
0.81 0.15 0.03
Matches are distributed among these distances:
79 2 0.01
80 3 0.02
81 147 0.95
82 2 0.01
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (80 bp):
GAGCATGGCTCGCCAAAACATATTGCGAGCTTGGCTCGCCAAAACATATCTGCGAGCTTGGCTCG
CCAAAGCATATCTGT
Found at i:48994710 original size:38 final size:38
Alignment explanation
Indices: 48994623--48994738 Score: 117
Period size: 38 Copynumber: 3.0 Consensus size: 38
48994613 TTACTGTGAT
* * *
48994623 CTCACTATAACATAATCACTTACCTTGCAGT-TCTGCGAG
1 CTCATTATAACACAATCACATACCTTGCA-TATC-GCGAG
* *
48994662 CTCATCATAACACAAACACATACCTTGCATATCGCGAG
1 CTCATTATAACACAATCACATACCTTGCATATCGCGAG
* * * * *
48994700 CTTATTATAACACAATCAAACACCTCGCATATTGCGAG
1 CTCATTATAACACAATCACATACCTTGCATATCGCGAG
48994738 C
1 C
48994739 ATACCTCGCT
Statistics
Matches: 64, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
38 38 0.59
39 26 0.41
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (38 bp):
CTCATTATAACACAATCACATACCTTGCATATCGCGAG
Found at i:48996636 original size:3 final size:3
Alignment explanation
Indices: 48996628--48996660 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
48996618 ATCTGCAATC
48996628 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
48996661 AAAATAGCTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:48997399 original size:99 final size:99
Alignment explanation
Indices: 48997294--48997488 Score: 354
Period size: 99 Copynumber: 2.0 Consensus size: 99
48997284 AGGCCTTTAG
48997294 CTACCAACATCAATTCAAAATTTAAAACATTCAAAATCCATTCATTATGATTTTTAATATCAAGT
1 CTACCAACATCAATTCAAAATTTAAAACATTCAAAATCCATTCATTATGATTTTTAATATCAAGT
* *
48997359 TCATTTTATATCAGAATCCATTTAACATCTCATT
66 TCATTTTATATCAAAATCCATTTAAAATCTCATT
*
48997393 CTACCAACATCAATTCAAAATTTAAAACGTTCAAAATCCATTCATTATGATTTTTAATATCAAGT
1 CTACCAACATCAATTCAAAATTTAAAACATTCAAAATCCATTCATTATGATTTTTAATATCAAGT
*
48997458 TCATTTTATATCAAAATCCTTTTAAAATCTC
66 TCATTTTATATCAAAATCCATTTAAAATCTC
48997489 GTTCGAACCT
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
99 92 1.00
ACGTcount: A:0.39, C:0.19, G:0.03, T:0.38
Consensus pattern (99 bp):
CTACCAACATCAATTCAAAATTTAAAACATTCAAAATCCATTCATTATGATTTTTAATATCAAGT
TCATTTTATATCAAAATCCATTTAAAATCTCATT
Found at i:48997472 original size:45 final size:45
Alignment explanation
Indices: 48997324--48997476 Score: 121
Period size: 45 Copynumber: 3.2 Consensus size: 45
48997314 TTTAAAACAT
48997324 TCAAAATCCATTCATTATGATTTTTAATATCAAGTTCATTTTATA
1 TCAAAATCCATTCATTATGATTTTTAATATCAAGTTCATTTTATA
* * * ** * * *
48997369 TCAGAATCCATTTAACA-TCTCATTCTACCAACATCAA-TTCAAAATTTAAAA
1 TCAAAATCCA-TT--CATTATGATT-T-TTAATATCAAGTTC---ATTTTATA
48997420 CGTTCAAAATCCATTCATTATGATTTTTAATATCAAGTTCATTTTATA
1 ---TCAAAATCCATTCATTATGATTTTTAATATCAAGTTCATTTTATA
48997468 TCAAAATCC
1 TCAAAATCC
48997477 TTTTAAAATC
Statistics
Matches: 79, Mismatches: 16, Indels: 26
0.65 0.13 0.21
Matches are distributed among these distances:
45 18 0.23
46 2 0.03
47 5 0.06
48 12 0.15
49 7 0.09
50 7 0.09
51 12 0.15
52 5 0.06
53 2 0.03
54 9 0.11
ACGTcount: A:0.38, C:0.18, G:0.04, T:0.40
Consensus pattern (45 bp):
TCAAAATCCATTCATTATGATTTTTAATATCAAGTTCATTTTATA
Found at i:48999699 original size:11 final size:11
Alignment explanation
Indices: 48999685--48999709 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
48999675 ATCTACATAA
48999685 GTAATAATTAC
1 GTAATAATTAC
48999696 GTAATAATTAC
1 GTAATAATTAC
48999707 GTA
1 GTA
48999710 GGACACATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.36
Consensus pattern (11 bp):
GTAATAATTAC
Found at i:49013004 original size:23 final size:23
Alignment explanation
Indices: 49012978--49013030 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 23
49012968 GGACAGCTCT
*
49012978 TATACACAAAATTTGATAGCATG
1 TATACACAAAATTTGACAGCATG
* *
49013001 TATATACAAAATTTGACAGCATT
1 TATACACAAAATTTGACAGCATG
49013024 TATACAC
1 TATACAC
49013031 CACAATGGAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.32
Consensus pattern (23 bp):
TATACACAAAATTTGACAGCATG
Found at i:49013957 original size:40 final size:41
Alignment explanation
Indices: 49013862--49013963 Score: 118
Period size: 41 Copynumber: 2.5 Consensus size: 41
49013852 TTGTATAAAA
*
49013862 CACCGGCATAAAGCCTGCTAGGCACAAAGCCTGATACATTT
1 CACCGGCATAAAGCCTGCTAGACACAAAGCCTGATACATTT
* * ** *
49013903 CACCGACACAAAGCCTGCTAGACATTAAGTCTGAATA-A-TT
1 CACCGGCATAAAGCCTGCTAGACACAAAGCCTG-ATACATTT
*
49013943 CACCGGCATTAAGCCTGCTAG
1 CACCGGCATAAAGCCTGCTAG
49013964 GTACAGAACC
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
40 20 0.39
41 28 0.55
42 3 0.06
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (41 bp):
CACCGGCATAAAGCCTGCTAGACACAAAGCCTGATACATTT
Found at i:49021024 original size:41 final size:40
Alignment explanation
Indices: 49020979--49021096 Score: 123
Period size: 41 Copynumber: 2.9 Consensus size: 40
49020969 TTGTATAAAA
49020979 CACCGGCATAAAGCCTGCTAGGCACAAAGCCTG-ATACATTT
1 CACCGGCATAAAGCCTGCTAGGCACAAAGCCTGAATA-A-TT
* * * ** *
49021020 CACCGACACAAAGCCTGCTAGACATTAAGTCTGAATAATT
1 CACCGGCATAAAGCCTGCTAGGCACAAAGCCTGAATAATT
* *
49021060 CACCGGCATTAAGCCTGCTAGGTACAGAA-CCTGAATA
1 CACCGGCATAAAGCCTGCTAGGCACA-AAGCCTGAATA
49021097 TCACAAATAC
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
40 28 0.46
41 30 0.49
42 3 0.05
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.20
Consensus pattern (40 bp):
CACCGGCATAAAGCCTGCTAGGCACAAAGCCTGAATAATT
Found at i:49024926 original size:27 final size:27
Alignment explanation
Indices: 49024887--49025087 Score: 168
Period size: 27 Copynumber: 7.4 Consensus size: 27
49024877 AACACCAGAA
* * *
49024887 AAATAGAATCCTTTGTGGTGATCTAAA
1 AAATGGAAGCCTTTGTGGTGATCTAAG
*
49024914 AAATGGATGCCTTTGTGGTGATCTAAG
1 AAATGGAAGCCTTTGTGGTGATCTAAG
**
49024941 AAATGGAAGCCTTTGTGGCAATCTAAG
1 AAATGGAAGCCTTTGTGGTGATCTAAG
* ** ** *
49024968 AAATGAAAGCCTTCATGGCAATCCAAG
1 AAATGGAAGCCTTTGTGGTGATCTAAG
* * * * * ** *
49024995 AAATAGAAGTCGTCGTAGCAATATAAG
1 AAATGGAAGCCTTTGTGGTGATCTAAG
* *
49025022 AAATGGAAGCCTTTGTGGCGATCTAAAA
1 AAATGGAAGCCTTTGTGGTGATCT-AAG
* *
49025050 AAACTGGAAGCCTTTGTAGTGATATAAG
1 AAA-TGGAAGCCTTTGTGGTGATCTAAG
49025078 AAATGGAAGC
1 AAATGGAAGC
49025088 TTTATGGCAA
Statistics
Matches: 141, Mismatches: 31, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
27 113 0.80
28 10 0.07
29 18 0.13
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (27 bp):
AAATGGAAGCCTTTGTGGTGATCTAAG
Found at i:49029307 original size:46 final size:45
Alignment explanation
Indices: 49029193--49029503 Score: 435
Period size: 45 Copynumber: 6.8 Consensus size: 45
49029183 CATTGACTTG
* *
49029193 AAAAATGAATAAGACCATAGTTGAAATACACTATGACACTATACC
1 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACC
** *
49029238 GGAAATGAATAAGACCATAGTTGAAAGACACTGTGGCACTATACC
1 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACC
* * *
49029283 AAAAAATGAATAAGAACATAGTTGAAAGACACTATGGCCCTATATCG
1 -AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATA-CC
49029330 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACC
1 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACC
* * *
49029375 AAAAATGAATAAGACCATAGTTGAAAGACATTATGGCCCTATATC
1 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACC
*
49029420 AGAAAATGAATAAGACCATAGTTGAAAGACACTATGGCA-TCATGCC
1 A-AAAATGAATAAGACCATAGTTGAAAGACACTATGGCACT-ATACC
** * *
49029466 GGAAATAAATAAGACCATAGTTGAAAGAAACTATGGCA
1 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCA
49029504 TCATATCGGA
Statistics
Matches: 237, Mismatches: 25, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
45 119 0.50
46 117 0.49
47 1 0.00
ACGTcount: A:0.46, C:0.16, G:0.17, T:0.21
Consensus pattern (45 bp):
AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACC
Found at i:49029440 original size:137 final size:137
Alignment explanation
Indices: 49029192--49029503 Score: 457
Period size: 137 Copynumber: 2.3 Consensus size: 137
49029182 TCATTGACTT
* * **
49029192 GAAAAATGAATAAGACCATAGTTGAAATACACTATGACACTATACCGGAAATGAATAAGACCATA
1 GAAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATGAATAAGACCATA
*
49029257 GTTGAAAGACACTGTGGCACTATACCAAAAAATGAATAAGAACATAGTTGAAAGACACTATGGC-
66 GTTGAAAGACACTATGGCACTATACCAAAAAATGAATAAGAACATAGTTGAAAGACACTATGGCA
* *
49029321 CCTATATC
131 TC-ATACC
49029329 GAAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATGAATAAGACCATA
1 GAAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATGAATAAGACCATA
* * * * *
49029394 GTTGAAAGACATTATGGCCCTATATCAGAAAATGAATAAGACCATAGTTGAAAGACACTATGGCA
66 GTTGAAAGACACTATGGCACTATACCAAAAAATGAATAAGAACATAGTTGAAAGACACTATGGCA
*
49029459 TCATGCC
131 TCATACC
* * *
49029466 G-GAAATAAATAAGACCATAGTTGAAAGAAACTATGGCA
1 GAAAAATGAATAAGACCATAGTTGAAAGACACTATGGCA
49029504 TCATATCGGA
Statistics
Matches: 158, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
136 34 0.22
137 123 0.78
138 1 0.01
ACGTcount: A:0.46, C:0.16, G:0.18, T:0.21
Consensus pattern (137 bp):
GAAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCAAAAATGAATAAGACCATA
GTTGAAAGACACTATGGCACTATACCAAAAAATGAATAAGAACATAGTTGAAAGACACTATGGCA
TCATACC
Found at i:49029510 original size:91 final size:90
Alignment explanation
Indices: 49029193--49029502 Score: 460
Period size: 91 Copynumber: 3.4 Consensus size: 90
49029183 CATTGACTTG
* * * * *
49029193 AAAAATGAATAAGACCATAGTTGAAATACACTATGACACTATACCGGAAATGAATAAGACCATAG
1 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCCCTATATCGAAAATGAATAAGACCATAG
*
49029258 TTGAAAGACACTGTGGCACTATACC
66 TTGAAAGACACTATGGCACTATACC
*
49029283 AAAAAATGAATAAGAACATAGTTGAAAGACACTATGGCCCTATATCGAAAAATGAATAAGACCAT
1 -AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCCCTATATCG-AAAATGAATAAGACCAT
49029348 AGTTGAAAGACACTATGGCACTATACC
64 AGTTGAAAGACACTATGGCACTATACC
*
49029375 AAAAATGAATAAGACCATAGTTGAAAGACATTATGGCCCTATATCAGAAAATGAATAAGACCATA
1 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCCCTATATC-GAAAATGAATAAGACCATA
*
49029440 GTTGAAAGACACTATGGCA-TCATGCC
65 GTTGAAAGACACTATGGCACT-ATACC
** * *
49029466 GGAAATAAATAAGACCATAGTTGAAAGAAACTATGGC
1 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGC
49029503 ATCATATCGG
Statistics
Matches: 201, Mismatches: 15, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
90 1 0.00
91 157 0.78
92 43 0.21
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.21
Consensus pattern (90 bp):
AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCCCTATATCGAAAATGAATAAGACCATAG
TTGAAAGACACTATGGCACTATACC
Found at i:49029526 original size:45 final size:45
Alignment explanation
Indices: 49029194--49029503 Score: 433
Period size: 46 Copynumber: 6.8 Consensus size: 45
49029184 ATTGACTTGA
* *
49029194 AAAATGAATAAGACCATAGTTGAAATACACTATGACACTATACCG
1 AAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCG
* * *
49029239 GAAATGAATAAGACCATAGTTGAAAGACACTGTGGCACTATACCAA
1 AAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACC-G
* * *
49029285 AAAATGAATAAGAACATAGTTGAAAGACACTATGGCCCTATATCG
1 AAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCG
*
49029330 AAAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCA
1 -AAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCG
* * *
49029376 AAAATGAATAAGACCATAGTTGAAAGACATTATGGCCCTATATCAG
1 AAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATA-CCG
*
49029422 AAAATGAATAAGACCATAGTTGAAAGACACTATGGCA-TCATGCCG
1 AAAATGAATAAGACCATAGTTGAAAGACACTATGGCACT-ATACCG
* * *
49029467 GAAATAAATAAGACCATAGTTGAAAGAAACTATGGCA
1 AAAATGAATAAGACCATAGTTGAAAGACACTATGGCA
49029504 TCATATCGGA
Statistics
Matches: 235, Mismatches: 26, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
45 117 0.50
46 118 0.50
ACGTcount: A:0.45, C:0.16, G:0.17, T:0.21
Consensus pattern (45 bp):
AAAATGAATAAGACCATAGTTGAAAGACACTATGGCACTATACCG
Found at i:49029888 original size:13 final size:13
Alignment explanation
Indices: 49029870--49029900 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
49029860 ATGGAAATAG
*
49029870 TTATACAAAGTGT
1 TTATACAAAATGT
49029883 TTATACAAAATGT
1 TTATACAAAATGT
49029896 TTATA
1 TTATA
49029901 TGGATAGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.06, G:0.10, T:0.42
Consensus pattern (13 bp):
TTATACAAAATGT
Found at i:49035420 original size:25 final size:25
Alignment explanation
Indices: 49035390--49035438 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
49035380 TTTTGGAATA
49035390 TGTATTCTGGATTGTATGCTCAATT
1 TGTATTCTGGATTGTATGCTCAATT
*
49035415 TGTATTCTGGATTGTATGTTCAAT
1 TGTATTCTGGATTGTATGCTCAAT
49035439 CTATATACTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.20, C:0.10, G:0.20, T:0.49
Consensus pattern (25 bp):
TGTATTCTGGATTGTATGCTCAATT
Found at i:49037622 original size:23 final size:19
Alignment explanation
Indices: 49037577--49037616 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
49037567 TTCAGTTATT
49037577 TAATTTTAATACATGTATA
1 TAATTTTAATACATGTATA
*
49037596 TAATTTTAATACATGAATA
1 TAATTTTAATACATGTATA
49037615 TA
1 TA
49037617 TATAATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (19 bp):
TAATTTTAATACATGTATA
Found at i:49039205 original size:110 final size:110
Alignment explanation
Indices: 49039012--49039230 Score: 420
Period size: 110 Copynumber: 2.0 Consensus size: 110
49039002 AATGATTAAG
49039012 CAAATGCAAGAGAAATTTAATAAGTATTGGGCTGAGTATTCATTGATATTGTCATGTGCTGCAAT
1 CAAATGCAAGAGAAATTTAATAAGTATTGGGCTGAGTATTCATTGATATTGTCATGTGCTGCAAT
* *
49039077 TTTAGATCCTCGTTACAAGTTGAATTATGTGCAGTATTGCTTTAC
66 TTTAGATCCTCATTACAAGTTGAATTATGTGCAATATTGCTTTAC
49039122 CAAATGCAAGAGAAATTTAATAAGTATTGGGCTGAGTATTCATTGATATTGTCATGTGCTGCAAT
1 CAAATGCAAGAGAAATTTAATAAGTATTGGGCTGAGTATTCATTGATATTGTCATGTGCTGCAAT
49039187 TTTAGATCCTCATTACAAGTTGAATTATGTGCAATATTGCTTTA
66 TTTAGATCCTCATTACAAGTTGAATTATGTGCAATATTGCTTTA
49039231 AAACAATCTA
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 107 1.00
ACGTcount: A:0.31, C:0.12, G:0.19, T:0.37
Consensus pattern (110 bp):
CAAATGCAAGAGAAATTTAATAAGTATTGGGCTGAGTATTCATTGATATTGTCATGTGCTGCAAT
TTTAGATCCTCATTACAAGTTGAATTATGTGCAATATTGCTTTAC
Found at i:49042829 original size:132 final size:131
Alignment explanation
Indices: 49042418--49042830 Score: 610
Period size: 132 Copynumber: 3.1 Consensus size: 131
49042408 AATTGGTAAT
* * * * *
49042418 TTCAACCTGCTCCACTGCAATTCAGGTAGATAAGACTGGTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTT-CCTACTACC
* * *
49042483 TCGGGAATATAAGATTTGCCGTCTTTGATCTGCTCCACTACTACTTAGGGAGACATGATATACAA
65 TCGGGAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTACTTAGGGAGACAGGATCTACAA
49042548 TC
130 TC
* * * * * *
49042550 TTCAACCTACTCCGCTACTGCTCAGGGAGATAGGACTGGTGGTTTAAATCTGGTTCCTACTATCT
1 TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTACCT
* *
49042615 CGGGAAGATAAGATTTGCCGTCTTCGATTTGCTCCACTACTACTTAGGGAGACAGGATCTACAAT
66 CGGGAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTACTTAGGGAGACAGGATCTACAAT
*
49042680 T
131 C
**
49042681 TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTATTTCCTTACTACC
1 TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCC-TACTACC
* * *
49042746 TTGGGAAGATAAGATTCGCCGTCTTTGATCTGCTCCACTACTTCTTAGGGAGACAGGATCTACAA
65 TCGGGAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTACTTAGGGAGACAGGATCTACAA
49042811 TC
130 TC
49042813 TTCAACCTACTCCACTGC
1 TTCAACCTACTCCACTGC
49042831 AAACTCAAAG
Statistics
Matches: 250, Mismatches: 30, Indels: 2
0.89 0.11 0.01
Matches are distributed among these distances:
131 120 0.48
132 130 0.52
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (131 bp):
TTCAACCTACTCCACTGCTACTCAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCTACTACCT
CGGGAAGATAAGATTTGCCGTCTTTGATCTGCTCCACTACTACTTAGGGAGACAGGATCTACAAT
C
Found at i:49046155 original size:44 final size:43
Alignment explanation
Indices: 49046083--49046311 Score: 133
Period size: 44 Copynumber: 5.2 Consensus size: 43
49046073 GAGTTACAGA
* **
49046083 CAAGATCTGCTATCTTCATTCTACTTCGCTGCAAACTCAGGGAGG
1 CAAGA-CTGCTATCTTCAGTCTGTTTCGCTGCAAA-TCAGGGAGG
* * * * * *
49046128 CAAGACTGGTGTCTTC-GATCTGTTTCGCTACCAATACAGGAAGA
1 CAAGACTGCTATCTTCAG-TCTGTTTCGCTGCAAAT-CAGGGAGG
** *
49046172 CAAGATCTGCTATCTTCAGTCTG-CCCGCTTCAAACTCAGGGAGG
1 CAAGA-CTGCTATCTTCAGTCTGTTTCGCTGCAAA-TCAGGGAGG
* * * * * * *
49046216 CAAGGCTGGTGTCTTC-GATCTCCTTT-GCTGCCAATACAGGAAGA
1 CAAGACTGCTATCTTCAG-TCT-GTTTCGCTGCAAAT-CAGGGAGG
** *
49046260 CAAGATCTGCTATCTTCAGTCTACTCCGCTGCAAAATCAGGGAGG
1 CAAGA-CTGCTATCTTCAGTCTGTTTCGCTGC-AAATCAGGGAGG
49046305 CAAGACT
1 CAAGACT
49046312 TGTAGCTTCC
Statistics
Matches: 135, Mismatches: 36, Indels: 27
0.68 0.18 0.14
Matches are distributed among these distances:
42 1 0.01
43 14 0.10
44 68 0.50
45 47 0.35
46 5 0.04
ACGTcount: A:0.25, C:0.26, G:0.22, T:0.26
Consensus pattern (43 bp):
CAAGACTGCTATCTTCAGTCTGTTTCGCTGCAAATCAGGGAGG
Found at i:49046230 original size:88 final size:89
Alignment explanation
Indices: 49046080--49046311 Score: 369
Period size: 88 Copynumber: 2.6 Consensus size: 89
49046070 GGGGAGTTAC
* *
49046080 AGACAAGATCTGCTATCTTCATTCTACTTCGCTGCAAACTCAGGGAGGCAAGACTGGTGTCTTCG
1 AGACAAGATCTGCTATCTTCAGTCTACTCCGCTGCAAACTCAGGGAGGCAAGACTGGTGTCTTCG
*
49046145 ATCT-GTTTCGCTACCAATACAGGA
66 ATCTCCTTT-GCTACCAATACAGGA
* * *
49046169 AGACAAGATCTGCTATCTTCAGTCTGC-CCGCTTCAAACTCAGGGAGGCAAGGCTGGTGTCTTCG
1 AGACAAGATCTGCTATCTTCAGTCTACTCCGCTGCAAACTCAGGGAGGCAAGACTGGTGTCTTCG
*
49046233 ATCTCCTTTGCTGCCAATACAGGA
66 ATCTCCTTTGCTACCAATACAGGA
*
49046257 AGACAAGATCTGCTATCTTCAGTCTACTCCGCTGCAAAATCAGGGAGGCAAGACT
1 AGACAAGATCTGCTATCTTCAGTCTACTCCGCTGCAAACTCAGGGAGGCAAGACT
49046312 TGTAGCTTCC
Statistics
Matches: 130, Mismatches: 11, Indels: 4
0.90 0.08 0.03
Matches are distributed among these distances:
88 78 0.60
89 52 0.40
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (89 bp):
AGACAAGATCTGCTATCTTCAGTCTACTCCGCTGCAAACTCAGGGAGGCAAGACTGGTGTCTTCG
ATCTCCTTTGCTACCAATACAGGA
Found at i:49046461 original size:44 final size:44
Alignment explanation
Indices: 49046412--49046526 Score: 167
Period size: 44 Copynumber: 2.6 Consensus size: 44
49046402 TTTTAATTCA
* * * * *
49046412 CTCCACTACAAATTCAGGGAGATAGGATTGGTTTCTTCAATATG
1 CTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTCAATATG
* *
49046456 CTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTCAGTCTG
1 CTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTCAATATG
49046500 CTCCACTGCAACTTCAAGGAGATAAGA
1 CTCCACTGCAACTTCAAGGAGATAAGA
49046527 CTTGTAATTT
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29
Consensus pattern (44 bp):
CTCCACTGCAACTTCAAGGAGATAAGATTGGTTTATTCAATATG
Found at i:49046730 original size:42 final size:43
Alignment explanation
Indices: 49046626--49046751 Score: 148
Period size: 42 Copynumber: 2.9 Consensus size: 43
49046616 TAATTTATAG
* *
49046626 CTTCAATCTGTTCTACTATAACTTCAGGGAAATAAGATTCGCTAT
1 CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGATT--CTAT
* * *
49046671 CTTCAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTT-TA-
1 CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGA-TTCTAT
* *
49046713 CTTCAATCCGTTCTACTGTAACTTCAGGGAGATAGGATT
1 CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGATT
49046752 ATTGGCTTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
41 2 0.03
42 32 0.46
43 2 0.03
45 32 0.46
46 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.33
Consensus pattern (43 bp):
CTTCAATCTGTTCTACTGTAACTTCAGGGAGATAAGATTCTAT
Found at i:49053180 original size:15 final size:16
Alignment explanation
Indices: 49053160--49053189 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
49053150 AAGAAATTTG
49053160 AAATCAAT-AATATAC
1 AAATCAATAAATATAC
49053175 AAATCAATAAATATA
1 AAATCAATAAATATA
49053190 AAAAAGTAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (16 bp):
AAATCAATAAATATAC
Found at i:49054012 original size:22 final size:23
Alignment explanation
Indices: 49053970--49054012 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
49053960 TCTACAAATC
49053970 TCTAAGATTACAAAATCATATAT
1 TCTAAGATTACAAAATCATATAT
*
49053993 TCTAAGATTAC-ATATCATAT
1 TCTAAGATTACAAAATCATAT
49054013 CTAAAATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.44, C:0.14, G:0.05, T:0.37
Consensus pattern (23 bp):
TCTAAGATTACAAAATCATATAT
Found at i:49054831 original size:46 final size:47
Alignment explanation
Indices: 49054744--49054838 Score: 165
Period size: 46 Copynumber: 2.0 Consensus size: 47
49054734 ATTATTAATT
49054744 TTTTGGATAAGTTTAAAACAAAAAAAATTCACTTCATATCTATATAA
1 TTTTGGATAAGTTTAAAACAAAAAAAATTCACTTCATATCTATATAA
* *
49054791 TTTTGGATAAGTTTAAAA-TAAAAAAATTCACTTCGTATCTATATAA
1 TTTTGGATAAGTTTAAAACAAAAAAAATTCACTTCATATCTATATAA
49054837 TT
1 TT
49054839 AAACACTTAA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 28 0.61
47 18 0.39
ACGTcount: A:0.44, C:0.09, G:0.07, T:0.39
Consensus pattern (47 bp):
TTTTGGATAAGTTTAAAACAAAAAAAATTCACTTCATATCTATATAA
Found at i:49062725 original size:30 final size:30
Alignment explanation
Indices: 49062663--49062727 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
49062653 AATAGTCTAT
**
49062663 ATTTTTATAATTTTCAAAGGATTAAATCAA
1 ATTTTTATAATTTTCAAAGGACCAAATCAA
* *
49062693 ATTTTTATAATTTT-AAAGGGCCAAAGTGAA
1 ATTTTTATAATTTTCAAAGGACCAAA-TCAA
49062723 ATTTT
1 ATTTT
49062728 ACCTTTATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 8 0.27
30 22 0.73
ACGTcount: A:0.40, C:0.06, G:0.11, T:0.43
Consensus pattern (30 bp):
ATTTTTATAATTTTCAAAGGACCAAATCAA
Found at i:49065794 original size:10 final size:9
Alignment explanation
Indices: 49065774--49065798 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
49065764 TCCATCCCAG
49065774 AAAAAATAA
1 AAAAAATAA
49065783 AAAAAATAA
1 AAAAAATAA
49065792 AAAAAAT
1 AAAAAAT
49065799 TCACCTCAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (9 bp):
AAAAAATAA
Found at i:49070578 original size:50 final size:50
Alignment explanation
Indices: 49070474--49070663 Score: 182
Period size: 50 Copynumber: 3.7 Consensus size: 50
49070464 AAAGAGATCT
* * *
49070474 CATGTAATACCATGTCTGGGACATGACATTGGCATCATTGAGATTATGTGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGACATTGGCACCA---AG---ATGAGAGGTCC
*
49070530 CATGTAAGACCATGTCTGGGACATGACGTTGGCACCAAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCC
*** * * * * **
49070580 CCCATAAGACCATGTCTAGGACATGGCATGGGCACCAATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCC
* * *
49070630 CATCTAAGACCATATCTGGGATATGACATTGGCA
1 CATGTAAGACCATGTCTGGGACATGACATTGGCA
49070664 GTACAGGAAA
Statistics
Matches: 112, Mismatches: 22, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
50 76 0.68
53 2 0.02
56 34 0.30
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGACATTGGCACCAAGATGAGAGGTCC
Found at i:49072186 original size:13 final size:13
Alignment explanation
Indices: 49072168--49072198 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
49072158 GGAATTAAAA
49072168 CTTCTATAAAAGC
1 CTTCTATAAAAGC
49072181 CTTCTATAAAAGC
1 CTTCTATAAAAGC
49072194 CTTCT
1 CTTCT
49072199 TATTCGAACC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.35
Consensus pattern (13 bp):
CTTCTATAAAAGC
Found at i:49073734 original size:38 final size:38
Alignment explanation
Indices: 49073681--49073817 Score: 150
Period size: 38 Copynumber: 3.6 Consensus size: 38
49073671 TTGTAGTCAT
* *
49073681 GGTGTCACCCTAAAGGACCATTAGATAATCGTCATCAC
1 GGTGTCACCCCAAAGGACCAGTAGATAATCGTCATCAC
* *
49073719 GGTGTCACCCCAAAGGACCAGTAGATAATTGTTATCAC
1 GGTGTCACCCCAAAGGACCAGTAGATAATCGTCATCAC
* * * *
49073757 AGTGTCGCCCCAAAGGACAAGTAGATAA-CTGTCGTCAC
1 GGTGTCACCCCAAAGGACCAGTAGATAATC-GTCATCAC
* * **
49073795 AGTGTCGCCCTGAAGGACCAGTA
1 GGTGTCACCCCAAAGGACCAGTA
49073818 CATATCTGTT
Statistics
Matches: 85, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 85 1.00
ACGTcount: A:0.31, C:0.26, G:0.23, T:0.21
Consensus pattern (38 bp):
GGTGTCACCCCAAAGGACCAGTAGATAATCGTCATCAC
Found at i:49075778 original size:20 final size:21
Alignment explanation
Indices: 49075753--49075791 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
49075743 AGGTCTGCCA
49075753 TTAATC-TAGAAAAT-AATGAG
1 TTAATCAT-GAAAATCAATGAG
49075773 TTAATCATGAAAATCAATG
1 TTAATCATGAAAATCAATG
49075792 GCGAGATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.49, C:0.08, G:0.13, T:0.31
Consensus pattern (21 bp):
TTAATCATGAAAATCAATGAG
Found at i:49079773 original size:19 final size:21
Alignment explanation
Indices: 49079728--49079773 Score: 51
Period size: 19 Copynumber: 2.2 Consensus size: 21
49079718 TAACCTAAGC
*
49079728 ATAAATAGATCTAGTTATTACT
1 ATAAATAGATCTAG-TATTACG
*
49079750 TTAAATAGAT-TA-TATTACG
1 ATAAATAGATCTAGTATTACG
49079769 ATAAA
1 ATAAA
49079774 GAAAAAAGAA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
19 10 0.48
21 2 0.10
22 9 0.43
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.39
Consensus pattern (21 bp):
ATAAATAGATCTAGTATTACG
Found at i:49087265 original size:111 final size:111
Alignment explanation
Indices: 49087071--49087296 Score: 407
Period size: 111 Copynumber: 2.0 Consensus size: 111
49087061 ATTTTTATCT
* * *
49087071 CTTCCAACCTTGAAGGGAGCAATATCTTTACAATGATAGGGTCTTTAATTGTCTCTTTCTCTAGT
1 CTTCCAACCTTGAAGGGAACAATATCTTTACAATGATAGGGTCTTTAATTGTCTCTTTCTCCAAT
49087136 TCAACTACCGGTGCAACTACTTCCTCTAGTTTTGGTTCATCATCAG
66 TCAACTACCGGTGCAACTACTTCCTCTAGTTTTGGTTCATCATCAG
*
49087182 CTTCCAACCTTGAAGGGAACAATATCTTTACAATGGTAGGGTCTTTAATTGTCTCTTTCTCCAAT
1 CTTCCAACCTTGAAGGGAACAATATCTTTACAATGATAGGGTCTTTAATTGTCTCTTTCTCCAAT
*
49087247 TCAACTACCGGTGCAACTACTTTCTCTAGTTTTGGTTCATCATCAG
66 TCAACTACCGGTGCAACTACTTCCTCTAGTTTTGGTTCATCATCAG
49087293 CTTC
1 CTTC
49087297 TAAGGGTCCT
Statistics
Matches: 110, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
111 110 1.00
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.37
Consensus pattern (111 bp):
CTTCCAACCTTGAAGGGAACAATATCTTTACAATGATAGGGTCTTTAATTGTCTCTTTCTCCAAT
TCAACTACCGGTGCAACTACTTCCTCTAGTTTTGGTTCATCATCAG
Found at i:49091461 original size:17 final size:17
Alignment explanation
Indices: 49091414--49091461 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
49091404 GCAACATAGT
*
49091414 ATAAAGGAAATAAAGTA
1 ATAAAAGAAATAAAGTA
* *
49091431 A-AATAAGCATTAAAGTA
1 ATAA-AAGAAATAAAGTA
49091448 ATAAAAGAAATAAA
1 ATAAAAGAAATAAA
49091462 ACAAAATTTA
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
16 2 0.08
17 20 0.83
18 2 0.08
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.19
Consensus pattern (17 bp):
ATAAAAGAAATAAAGTA
Found at i:49101634 original size:30 final size:30
Alignment explanation
Indices: 49101598--49101686 Score: 137
Period size: 30 Copynumber: 3.0 Consensus size: 30
49101588 TAATAGTACA
*
49101598 GTGTGGGCCTTAGCCCAATATAGTAACAAT
1 GTGTGGGCCTTAGCCCAATACAGTAACAAT
49101628 GTGTGGGCCTTAGCCCAATACAGTAAC-A-
1 GTGTGGGCCTTAGCCCAATACAGTAACAAT
*
49101656 GTGTGAGCCTTAGCCCAATACAGTAATCAAT
1 GTGTGGGCCTTAGCCCAATACAGTAA-CAAT
49101687 ACAATACAGT
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
28 25 0.46
29 2 0.04
30 27 0.50
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.25
Consensus pattern (30 bp):
GTGTGGGCCTTAGCCCAATACAGTAACAAT
Found at i:49101668 original size:28 final size:28
Alignment explanation
Indices: 49101595--49101681 Score: 138
Period size: 28 Copynumber: 3.0 Consensus size: 28
49101585 CAGTAATAGT
*
49101595 ACAGTGTGGGCCTTAGCCCAATATAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
49101623 ACAATGTGTGGGCCTTAGCCCAATACAGTA
1 AC-A-GTGTGGGCCTTAGCCCAATACAGTA
*
49101653 ACAGTGTGAGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAGTA
49101681 A
1 A
49101682 TCAATACAAT
Statistics
Matches: 55, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
28 27 0.49
29 2 0.04
30 26 0.47
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (28 bp):
ACAGTGTGGGCCTTAGCCCAATACAGTA
Found at i:49101818 original size:26 final size:26
Alignment explanation
Indices: 49101789--49101869 Score: 119
Period size: 26 Copynumber: 3.1 Consensus size: 26
49101779 AACACACCAA
49101789 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
*
49101815 TATCGCAGCAAAGCTGTCAGTAACTA-
1 TATCGCAGCAAAGCTGCCAGTAAC-AG
* *
49101841 TATCGCAGTAAAGCTGCTAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
49101867 TAT
1 TAT
49101870 ACTTCCTCCA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.02
26 47 0.96
27 1 0.02
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:49102076 original size:27 final size:26
Alignment explanation
Indices: 49102039--49102796 Score: 546
Period size: 27 Copynumber: 28.2 Consensus size: 26
49102029 AACAGTCATT
*
49102039 ATTTTACCCTATGGGGGTAATTTAATC
1 ATTTTACCCTATGGGGGT-ATTTGATC
*
49102066 ATTTTACCCTATGGGGGTAATTTGTTC
1 ATTTTACCCTATGGGGGT-ATTTGATC
* * * *
49102093 ATTTTACCCTACGAGGGTAATTCAGTC
1 ATTTTACCCTATGGGGGTATTTGA-TC
* * * * *
49102120 ATTTTACCCTA-CGAGGTAATTCAGTT
1 ATTTTACCCTATGGGGGTATTTGA-TC
* * *
49102146 ATTTTATCCTACGGGGGTAATTCGATC
1 ATTTTACCCTATGGGGGT-ATTTGATC
* * *
49102173 ATTTTACCCTACGGGGGTAACTCGATC
1 ATTTTACCCTATGGGGGT-ATTTGATC
* * * *
49102200 ATTTTACCTTATAGAGGTAATTTGGTC
1 ATTTTACCCTATGGGGGT-ATTTGATC
*
49102227 ATTTTACCCTA-CGGGGTAATTT-AGTC
1 ATTTTACCCTATGGGGGT-ATTTGA-TC
* * **
49102253 ATTTTACCCTACGAGGGTTATTCAATC
1 ATTTTACCCTATG-GGGGTATTTGATC
* ** * *
49102280 ATTTTATCCT-TCGACGGTATTTAAGTT
1 ATTTTACCCTAT-GGGGGTATTTGA-TC
* *
49102307 ATTTAACCCTATGGGGGTATTTCAGTC
1 ATTTTACCCTATGGGGGTATTTGA-TC
*
49102334 ATTTTACCCT-TCGAGGGTATTTTGATC
1 ATTTTACCCTAT-GGGGGTA-TTTGATC
49102361 ATTTTACCCT-TCGGGGGTATTTTGATC
1 ATTTTACCCTAT-GGGGGTA-TTTGATC
* * * *
49102388 ATTTTAACTTATGAGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTT-GATC
*
49102415 ATTTTACCCTATGGGGGTATTTTAATC
1 ATTTTACCCTATGGGGGTA-TTTGATC
* *
49102442 ATTCTATCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTT-GATC
*
49102469 ATTCTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTT-GATC
* *
49102496 ATTCTACCCTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTT-GATC
* *
49102523 ATTCTACCTTAT-GGGGTATTTCCG-TC
1 ATTTTACCCTATGGGGGTATTT--GATC
* *
49102549 ATTTTACCCTATGAGGGTATTTCAGTC
1 ATTTTACCCTATGGGGGTATTTGA-TC
* *
49102576 ATTTTACCTTATGGGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTT-GATC
* *
49102603 ATTCTACCCAATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTT-GATC
* * *
49102630 ATTCTACCTTAT-GGGGTATTTAAGTC
1 ATTTTACCCTATGGGGGTATTTGA-TC
* * *
49102656 ATTCTACCCTATGAGGGTATTTCGGTC
1 ATTTTACCCTATGGGGGTATTT-GATC
49102683 ATTTTACCCTATGGGGGTATTTCGATC
1 ATTTTACCCTATGGGGGTATTT-GATC
* *
49102710 ATTTTACCCTATGGGGGTATTACGGTC
1 ATTTTACCCTATGGGGGTATT-TGATC
* *
49102737 -TTTCTACCCTATAGGGGTATTTCGGTC
1 ATTT-TACCCTATGGGGGTATTT-GATC
* ** *
49102764 ACTTTACCCTATCAGGGTATTTTGGTC
1 ATTTTACCCTATGGGGGTA-TTTGATC
49102791 ATTTTA
1 ATTTTA
49102797 ACTATTTTGG
Statistics
Matches: 606, Mismatches: 96, Indels: 58
0.80 0.13 0.08
Matches are distributed among these distances:
25 1 0.00
26 106 0.17
27 477 0.79
28 22 0.04
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (26 bp):
ATTTTACCCTATGGGGGTATTTGATC
Found at i:49102228 original size:107 final size:107
Alignment explanation
Indices: 49102039--49102796 Score: 669
Period size: 107 Copynumber: 7.1 Consensus size: 107
49102029 AACAGTCATT
* * *
49102039 ATTTTACCCTATGGGGGTAATTT-AATCATTTTACCCTATGGGGGTAATTTGTTCATTTTACCCT
1 ATTTTACCCTATGGGGGT-ATTTCGATCATTTTACCCTATGGGGGTAATTCGATCATTTTACCCT
* * *
49102103 ACGAGGGTAATTCAGTCATTTTACCCTACGA-GGTAATTCAGTT
65 ATG-GGGTATTTCAGTCATTTTACCCTACGAGGGTAATTCAGTC
* * * * * *
49102146 ATTTTATCCTACGGGGGTAATTCGATCATTTTACCCTACGGGGGTAACTCGATCATTTTACCTTA
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTAATTCGATCATTTTACCCTA
* * *
49102211 TAGAGGTAATTT-GGTCATTTTACCCTACG-GGGTAATTTAGTC
66 T-GGGGT-ATTTCAGTCATTTTACCCTACGAGGGTAATTCAGTC
* * * * ** ** * *
49102253 ATTTTACCCTACGAGGGT-TATTCAATCATTTTATCCT-TCGACGGT-ATTTAAGTTATTTAACC
1 ATTTTACCCTATGGGGGTAT-TTCGATCATTTTACCCTAT-GGGGGTAATTCGA-TCATTTTACC
* **
49102315 CTATGGGGGTATTTCAGTCATTTTACCCTTCGAGGGT-ATTTTGATC
63 CTAT-GGGGTATTTCAGTCATTTTACCCTACGAGGGTAATTCAG-TC
* * * * * *
49102361 ATTTTACCCT-TCGGGGGTATTTTGATCATTTTAACTTATGAGGGTATTTCGGTCATTTTACCCT
1 ATTTTACCCTAT-GGGGGTATTTCGATCATTTTACCCTATGGGGGTAATTCGATCATTTTACCCT
* * * * * * *
49102425 ATGGGGGTATTTTAATCATTCTATCCTATGGGGGTATTTC-GATC
65 AT-GGGGTATTTCAGTCATTTTACCCTACGAGGGTAATTCAG-TC
* * * * * *
49102469 ATTCTACCCTATGGGGGTATTTCGATCATTCTACCCTATGGGGGTATTTCGGTCATTCTACCTTA
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTAATTCGATCATTTTACCCTA
* * *
49102534 TGGGGTATTTCCGTCATTTTACCCTATGAGGGTATTTCAGTC
66 TGGGGTATTTCAGTCATTTTACCCTACGAGGGTAATTCAGTC
* * * * * * *
49102576 ATTTTACCTTATGGGGGTATTTCGGTCATTCTACCCAATGGGGGTATTTCGATCATTCTACCTTA
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTAATTCGATCATTTTACCCTA
* * * * *
49102641 TGGGGTATTTAAGTCATTCTACCCTATGAGGGTATTTCGGTC
66 TGGGGTATTTCAGTCATTTTACCCTACGAGGGTAATTCAGTC
*
49102683 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGT-ATTACGGTC-TTTCTACCC
1 ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTAATT-CGATCATTT-TACCC
* * * **
49102746 TATAGGGGTATTTCGGTCACTTTACCCTATC-AGGGTATTTTGGTC
64 TAT-GGGGTATTTCAGTCATTTTACCCTA-CGAGGGTAATTCAGTC
49102791 ATTTTA
1 ATTTTA
49102797 ACTATTTTGG
Statistics
Matches: 537, Mismatches: 93, Indels: 41
0.80 0.14 0.06
Matches are distributed among these distances:
106 14 0.03
107 334 0.62
108 182 0.34
109 7 0.01
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (107 bp):
ATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGGGGGTAATTCGATCATTTTACCCTA
TGGGGTATTTCAGTCATTTTACCCTACGAGGGTAATTCAGTC
Found at i:49105266 original size:17 final size:17
Alignment explanation
Indices: 49105244--49105276 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
49105234 TTAACTTGTT
*
49105244 TTTAAACTTTCTCTAAC
1 TTTAAACTCTCTCTAAC
49105261 TTTAAACTCTCTCTAA
1 TTTAAACTCTCTCTAA
49105277 AACCTTCCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.45
Consensus pattern (17 bp):
TTTAAACTCTCTCTAAC
Found at i:49107670 original size:20 final size:20
Alignment explanation
Indices: 49107645--49107705 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 20
49107635 ATAATATTTG
49107645 GAAAAATAAAAATATTTTTA
1 GAAAAATAAAAATATTTTTA
* *
49107665 GAAAAAT-----TA-ATTTC
1 GAAAAATAAAAATATTTTTA
49107679 GAAAAATAAAAATATTTTTA
1 GAAAAATAAAAATATTTTTA
49107699 GAAAAAT
1 GAAAAAT
49107706 TAATTTTATG
Statistics
Matches: 31, Mismatches: 4, Indels: 12
0.66 0.09 0.26
Matches are distributed among these distances:
14 10 0.32
15 2 0.06
19 2 0.06
20 17 0.55
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.33
Consensus pattern (20 bp):
GAAAAATAAAAATATTTTTA
Found at i:49107688 original size:34 final size:34
Alignment explanation
Indices: 49107640--49107711 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
49107630 GTTAAATAAT
*
49107640 ATTTGGAAAAATAAAAATATTTTTAGAAAAATTA
1 ATTTCGAAAAATAAAAATATTTTTAGAAAAATTA
49107674 ATTTCGAAAAATAAAAATATTTTTAGAAAAATTA
1 ATTTCGAAAAATAAAAATATTTTTAGAAAAATTA
49107708 ATTT
1 ATTT
49107712 TATGGTTTTA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.54, C:0.01, G:0.07, T:0.38
Consensus pattern (34 bp):
ATTTCGAAAAATAAAAATATTTTTAGAAAAATTA
Found at i:49108050 original size:2 final size:2
Alignment explanation
Indices: 49108043--49108210 Score: 327
Period size: 2 Copynumber: 84.0 Consensus size: 2
49108033 ATTGAGAGTG
49108043 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
49108085 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
49108127 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
*
49108169 CT CT CT CT CT CT CT CT CT GT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
49108211 TTGCTTATTT
Statistics
Matches: 164, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
2 164 1.00
ACGTcount: A:0.00, C:0.49, G:0.01, T:0.50
Consensus pattern (2 bp):
CT
Found at i:49112965 original size:22 final size:22
Alignment explanation
Indices: 49112940--49112990 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
49112930 AAAATTGAAA
*
49112940 TAACAATGACAATGTCTTATAT
1 TAACAACGACAATGTCTTATAT
*
49112962 TAACAACGTCAATGTCTTATAT
1 TAACAACGACAATGTCTTATAT
49112984 TAACAAC
1 TAACAAC
49112991 AAGGTAAAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (22 bp):
TAACAACGACAATGTCTTATAT
Found at i:49116696 original size:31 final size:29
Alignment explanation
Indices: 49116623--49116704 Score: 87
Period size: 31 Copynumber: 2.8 Consensus size: 29
49116613 AATGTGTAAT
*
49116623 TGTATACAT-AAACTTTAATTTGGTGCAA
1 TGTATACTTGAAACTTTAATTTGGTGCAA
* *
49116651 T-TATACATGTGAAACTCTAATTGTGGTTCAAA
1 TGTATAC-T-TGAAACTTTAATT-TGGTGC-AA
49116683 TGTATACTTGAAACTTTAATTT
1 TGTATACTTGAAACTTTAATTT
49116705 TGATTTAATC
Statistics
Matches: 44, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
27 5 0.11
28 1 0.02
29 1 0.02
30 11 0.25
31 17 0.39
32 4 0.09
33 5 0.11
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.41
Consensus pattern (29 bp):
TGTATACTTGAAACTTTAATTTGGTGCAA
Found at i:49116877 original size:29 final size:30
Alignment explanation
Indices: 49116835--49116903 Score: 97
Period size: 30 Copynumber: 2.3 Consensus size: 30
49116825 ATTATTTACA
*
49116835 AAAATTAGATC-AAATCAAAATTTCATATAT
1 AAAATTATATCAAAATCAAAATTT-ATATAT
49116865 AAAATTATA-CAAAATCAAAATTTATATAT
1 AAAATTATATCAAAATCAAAATTTATATAT
*
49116894 ACAATTATAT
1 AAAATTATAT
49116904 ATTAAACCAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 15 0.43
30 20 0.57
ACGTcount: A:0.55, C:0.09, G:0.01, T:0.35
Consensus pattern (30 bp):
AAAATTATATCAAAATCAAAATTTATATAT
Found at i:49116923 original size:31 final size:29
Alignment explanation
Indices: 49116850--49116926 Score: 82
Period size: 29 Copynumber: 2.6 Consensus size: 29
49116840 TAGATCAAAT
*
49116850 CAAAATTTCATATATAAAATTATACAAAAT
1 CAAAA-TTCATATATAAAATTATACAAAAC
* * *
49116880 CAAAATTTATATATACAATTATATATTAAAC
1 CAAAATTCATATATAAAATTATACA--AAAC
*
49116911 CATAATTCATATATAA
1 CAAAATTCATATATAA
49116927 TTTTAAAATT
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 17 0.45
30 5 0.13
31 16 0.42
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.36
Consensus pattern (29 bp):
CAAAATTCATATATAAAATTATACAAAAC
Found at i:49117937 original size:8 final size:8
Alignment explanation
Indices: 49117926--49117968 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
49117916 TTTAAGGTTT
49117926 ATATATAC
1 ATATATAC
49117934 ATATATAC
1 ATATATAC
* *
49117942 ATACATAT
1 ATATATAC
*
49117950 ATATATGC
1 ATATATAC
*
49117958 ATGTATAC
1 ATATATAC
49117966 ATA
1 ATA
49117969 CATATATAAG
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.47, C:0.12, G:0.05, T:0.37
Consensus pattern (8 bp):
ATATATAC
Found at i:49117945 original size:12 final size:12
Alignment explanation
Indices: 49117925--49117976 Score: 68
Period size: 12 Copynumber: 4.3 Consensus size: 12
49117915 TTTTAAGGTT
*
49117925 TATATATACATA
1 TATACATACATA
49117937 TATACATACATA
1 TATACATACATA
* * *
49117949 TATATATGCATG
1 TATACATACATA
49117961 TATACATACATA
1 TATACATACATA
49117973 TATA
1 TATA
49117977 AGCACAGACA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (12 bp):
TATACATACATA
Found at i:49117964 original size:24 final size:24
Alignment explanation
Indices: 49117925--49117976 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 24
49117915 TTTTAAGGTT
49117925 TATATATACATATATACATACATA
1 TATATATACATATATACATACATA
* *
49117949 TATATATGCATGTATACATACATA
1 TATATATACATATATACATACATA
49117973 TATA
1 TATA
49117977 AGCACAGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.04, T:0.38
Consensus pattern (24 bp):
TATATATACATATATACATACATA
Found at i:49121297 original size:276 final size:276
Alignment explanation
Indices: 49120804--49121353 Score: 1091
Period size: 276 Copynumber: 2.0 Consensus size: 276
49120794 TATATGGGCT
*
49120804 TGTTAGCATGACTGTCATGTAAATACCTACCTAGAACTACACTCAGTTTGCAATTCTCTTTTCAG
1 TGTTAGCATGACTGTCATGTAAATACCTACCTAGAACTACACTCAATTTGCAATTCTCTTTTCAG
49120869 TTTCAAGCTTTGCGAGCAATGGTGCAAGCCAACCCACAAATATTGCAGGTTATTCTCTGGTCCCT
66 TTTCAAGCTTTGCGAGCAATGGTGCAAGCCAACCCACAAATATTGCAGGTTATTCTCTGGTCCCT
49120934 TGTTTCCCCTCTTCAATCCTAGTGTGTTTTTCATTGTCTTTTTATCTTTTGCTTTTTACCTTTCA
131 TGTTTCCCCTCTTCAATCCTAGTGTGTTTTTCATTGTCTTTTTATCTTTTGCTTTTTACCTTTCA
49120999 CCTTTCCTCAATGTCTCCCTTTTTTATATTTTTGGCAGCCTATGCTTCAAGAGTTGGGGAAACAA
196 CCTTTCCTCAATGTCTCCCTTTTTTATATTTTTGGCAGCCTATGCTTCAAGAGTTGGGGAAACAA
49121064 AATCCTAATTTAATAA
261 AATCCTAATTTAATAA
49121080 TGTTAGCATGACTGTCATGTAAATACCTACCTAGAACTACACTCAATTTGCAATTCTCTTTTCAG
1 TGTTAGCATGACTGTCATGTAAATACCTACCTAGAACTACACTCAATTTGCAATTCTCTTTTCAG
49121145 TTTCAAGCTTTGCGAGCAATGGTGCAAGCCAACCCACAAATATTGCAGGTTATTCTCTGGTCCCT
66 TTTCAAGCTTTGCGAGCAATGGTGCAAGCCAACCCACAAATATTGCAGGTTATTCTCTGGTCCCT
49121210 TGTTTCCCCTCTTCAATCCTAGTGTGTTTTTCATTGTCTTTTTATCTTTTGCTTTTTACCTTTCA
131 TGTTTCCCCTCTTCAATCCTAGTGTGTTTTTCATTGTCTTTTTATCTTTTGCTTTTTACCTTTCA
49121275 CCTTTCCTCAATGTCTCCCTTTTTTATATTTTTGGCAGCCTATGCTTCAAGAGTTGGGGAAACAA
196 CCTTTCCTCAATGTCTCCCTTTTTTATATTTTTGGCAGCCTATGCTTCAAGAGTTGGGGAAACAA
49121340 AATCCTAATTTAAT
261 AATCCTAATTTAAT
49121354 GAGACTTATT
Statistics
Matches: 273, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
276 273 1.00
ACGTcount: A:0.23, C:0.23, G:0.14, T:0.40
Consensus pattern (276 bp):
TGTTAGCATGACTGTCATGTAAATACCTACCTAGAACTACACTCAATTTGCAATTCTCTTTTCAG
TTTCAAGCTTTGCGAGCAATGGTGCAAGCCAACCCACAAATATTGCAGGTTATTCTCTGGTCCCT
TGTTTCCCCTCTTCAATCCTAGTGTGTTTTTCATTGTCTTTTTATCTTTTGCTTTTTACCTTTCA
CCTTTCCTCAATGTCTCCCTTTTTTATATTTTTGGCAGCCTATGCTTCAAGAGTTGGGGAAACAA
AATCCTAATTTAATAA
Found at i:49124567 original size:20 final size:20
Alignment explanation
Indices: 49124544--49124585 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
49124534 TATGTTTCAG
*
49124544 TGGTGAGTTTAGTGTTTAAA
1 TGGTGAGTTTAGTGTCTAAA
*
49124564 TGGTGGGTTTAGTGTCTAAA
1 TGGTGAGTTTAGTGTCTAAA
49124584 TG
1 TG
49124586 TAGCATCTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.21, C:0.02, G:0.33, T:0.43
Consensus pattern (20 bp):
TGGTGAGTTTAGTGTCTAAA
Found at i:49125703 original size:5 final size:5
Alignment explanation
Indices: 49125702--49125731 Score: 60
Period size: 5 Copynumber: 6.0 Consensus size: 5
49125692 ATATATATTA
49125702 TATAT TATAT TATAT TATAT TATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT
49125732 AATAAAAGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATAT
Found at i:49126608 original size:25 final size:27
Alignment explanation
Indices: 49126580--49126638 Score: 72
Period size: 25 Copynumber: 2.3 Consensus size: 27
49126570 GTATATGAAT
*
49126580 TGAAATGAA-CTATTGGAA-TGAGAT-G
1 TGAAAT-AATCTAATGGAATTGAGATAG
49126605 TGAAA-AATCTAATGGAATTGAGATAG
1 TGAAATAATCTAATGGAATTGAGATAG
49126631 TGAAATAA
1 TGAAATAA
49126639 GGTATGAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
23 2 0.07
24 8 0.28
25 11 0.38
26 6 0.21
27 2 0.07
ACGTcount: A:0.46, C:0.03, G:0.24, T:0.27
Consensus pattern (27 bp):
TGAAATAATCTAATGGAATTGAGATAG
Found at i:49129908 original size:24 final size:24
Alignment explanation
Indices: 49129881--49129927 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
49129871 TTTGAAATGG
49129881 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
49129905 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
49129928 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:49130498 original size:24 final size:24
Alignment explanation
Indices: 49130471--49130517 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
49130461 TTTGAAATGG
49130471 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
49130495 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
49130518 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:49130737 original size:590 final size:590
Alignment explanation
Indices: 49129619--49130798 Score: 2333
Period size: 590 Copynumber: 2.0 Consensus size: 590
49129609 TTGGAATTTA
49129619 TACAAATGTTGAGTAAAAATTGAAATATGCAATATGAAATTGAATTATATTGTATTGATGAATTA
1 TACAAATGTTGAGTAAAAATTGAAATATGCAATATGAAATTGAATTATATTGTATTGATGAATTA
49129684 TAATTGTTTTAATTCTGTAGCTAACTTCATACCGGAATCCTCGACTAAAAAGGGGAAAGATAAAG
66 TAATTGTTTTAATTCTGTAGCTAACTTCATACCGGAATCCTCGACTAAAAAGGGGAAAGATAAAG
* *
49129749 TCGACGAGGAATAGCTCGAAATTTTTGGTTTATATTTCTATAATCCGAATTTAGTTGTTAATTGT
131 TCGACGAGGAATAGCTCGAAATTCTTGGTTTACATTTCTATAATCCGAATTTAGTTGTTAATTGT
49129814 TATAATTCAATTTAATGTATATGGTAAATGTTTAGGTGAGAACTATTGTGTTTTGCATTTGAAAT
196 TATAATTCAATTTAATGTATATGGTAAATGTTTAGGTGAGAACTATTGTGTTTTGCATTTGAAAT
49129879 GGATTGATTTAGTATGTGATGAATTTATTGAATTTATATTGATTGAATTGGTATATATATTGAAT
261 GGATTGATTTAGTATGTGATGAATTTATTGAATTTATATTGATTGAATTGGTATATATATTGAAT
49129944 ATATTGATTATTTGAATTGAAATGATTATCGGTTGTATTTGAAAAGTGAATTGAAACCCTATTAA
326 ATATTGATTATTTGAATTGAAATGATTATCGGTTGTATTTGAAAAGTGAATTGAAACCCTATTAA
49130009 TTGTATCGAGCTGATTCGAATATAGATGGCATGCCATAGGATTGGAAGAGTTCAGGGATTTCTTC
391 TTGTATCGAGCTGATTCGAATATAGATGGCATGCCATAGGATTGGAAGAGTTCAGGGATTTCTTC
49130074 GACTTCGAGTCAATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATTCGATGGGGCACTGG
456 GACTTCGAGTCAATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATTCGATGGGGCACTGG
49130139 GTCCCAATTTACTTAGGTTTAACCGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCCG
521 GTCCCAATTTACTTAGGTTTAACCGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCCG
49130204 ATGAG
586 ATGAG
49130209 TACAAATGTTGAGTAAAAATTGAAATATGCAATATGAAATTGAATTATATTGTATTGATGAATTA
1 TACAAATGTTGAGTAAAAATTGAAATATGCAATATGAAATTGAATTATATTGTATTGATGAATTA
49130274 TAATTGTTTTAATTCTGTAGCTAACTTCATACCGGAATCCTCGACTAAAAAGGGGAAAGATAAAG
66 TAATTGTTTTAATTCTGTAGCTAACTTCATACCGGAATCCTCGACTAAAAAGGGGAAAGATAAAG
*
49130339 TCGACGAGGAATAGCTCGAAATTCTTGGTTTACATTTCTCTAATCCGAATTTAGTTGTTAATTGT
131 TCGACGAGGAATAGCTCGAAATTCTTGGTTTACATTTCTATAATCCGAATTTAGTTGTTAATTGT
49130404 TATAATTCAATTTAATGTATATGGTAAATGTTTAGGTGAGAACTATTGTGTTTTGCATTTGAAAT
196 TATAATTCAATTTAATGTATATGGTAAATGTTTAGGTGAGAACTATTGTGTTTTGCATTTGAAAT
49130469 GGATTGATTTAGTATGTGATGAATTTATTGAATTTATATTGATTGAATTGGTATATATATTGAAT
261 GGATTGATTTAGTATGTGATGAATTTATTGAATTTATATTGATTGAATTGGTATATATATTGAAT
49130534 ATATTGATTATTTGAATTGAAATGATTATCGGTTGTATTTGAAAAGTGAATTGAAACCCTATTAA
326 ATATTGATTATTTGAATTGAAATGATTATCGGTTGTATTTGAAAAGTGAATTGAAACCCTATTAA
49130599 TTGTATCGAGCTGATTCGAATATAGATGGCATGCCATAGGATTGGAAGAGTTCAGGGATTTCTTC
391 TTGTATCGAGCTGATTCGAATATAGATGGCATGCCATAGGATTGGAAGAGTTCAGGGATTTCTTC
49130664 GACTTCGAGTCAATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATTCGATGGGGCACTGG
456 GACTTCGAGTCAATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATTCGATGGGGCACTGG
49130729 GTCCCAATTTACTTAGGTTTAACCGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCCG
521 GTCCCAATTTACTTAGGTTTAACCGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCCG
49130794 ATGAG
586 ATGAG
49130799 GCACTGGGTG
Statistics
Matches: 587, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
590 587 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.37
Consensus pattern (590 bp):
TACAAATGTTGAGTAAAAATTGAAATATGCAATATGAAATTGAATTATATTGTATTGATGAATTA
TAATTGTTTTAATTCTGTAGCTAACTTCATACCGGAATCCTCGACTAAAAAGGGGAAAGATAAAG
TCGACGAGGAATAGCTCGAAATTCTTGGTTTACATTTCTATAATCCGAATTTAGTTGTTAATTGT
TATAATTCAATTTAATGTATATGGTAAATGTTTAGGTGAGAACTATTGTGTTTTGCATTTGAAAT
GGATTGATTTAGTATGTGATGAATTTATTGAATTTATATTGATTGAATTGGTATATATATTGAAT
ATATTGATTATTTGAATTGAAATGATTATCGGTTGTATTTGAAAAGTGAATTGAAACCCTATTAA
TTGTATCGAGCTGATTCGAATATAGATGGCATGCCATAGGATTGGAAGAGTTCAGGGATTTCTTC
GACTTCGAGTCAATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATTCGATGGGGCACTGG
GTCCCAATTTACTTAGGTTTAACCGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCCG
ATGAG
Found at i:49130795 original size:40 final size:40
Alignment explanation
Indices: 49130676--49130813 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 40
49130666 CTTCGAGTCA
* * * *
49130676 ATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATTCG
1 ATGAGACACTGGGTGCCAAATTATTACTTCGGATT-ATCCG
* * * * * *
49130717 ATGGGGCACTGGGT-CCCAA-T-TTACTTAGGTTTAACCG
1 ATGAGACACTGGGTGCCAAATTATTACTTCGGATTATCCG
* *
49130754 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCCG
1 ATGAGACACTGGGTGCCAAATTATTACTTCGGATTATCCG
*
49130794 ATGAGGCACTGGGTGCCAAA
1 ATGAGACACTGGGTGCCAAA
49130814 CTGGTGTGTT
Statistics
Matches: 74, Mismatches: 20, Indels: 7
0.73 0.20 0.07
Matches are distributed among these distances:
37 15 0.20
38 12 0.16
39 2 0.03
40 33 0.45
41 12 0.16
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (40 bp):
ATGAGACACTGGGTGCCAAATTATTACTTCGGATTATCCG
Found at i:49132482 original size:24 final size:24
Alignment explanation
Indices: 49132455--49132501 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
49132445 TTTGAAATGG
49132455 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
49132479 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
49132502 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:49132779 original size:40 final size:40
Alignment explanation
Indices: 49132660--49132797 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 40
49132650 CTTCGAGTCA
* * * *
49132660 ATGAGACACTGGGTGTCAATTTACTACTTCGGATTAATTCG
1 ATGAGACACTGGGTGCCAAATTATTACTTCGGATT-ATCCG
* * * * * *
49132701 ATGGGGCACTGGGT-CCCAA-T-TTACTTAGGTTTAACCG
1 ATGAGACACTGGGTGCCAAATTATTACTTCGGATTATCCG
* *
49132738 ATGAGACACTGGGTGTCAAATTATTACTTCGAATTATCCG
1 ATGAGACACTGGGTGCCAAATTATTACTTCGGATTATCCG
*
49132778 ATGAGGCACTGGGTGCCAAA
1 ATGAGACACTGGGTGCCAAA
49132798 CTGGTGTGTT
Statistics
Matches: 74, Mismatches: 20, Indels: 7
0.73 0.20 0.07
Matches are distributed among these distances:
37 15 0.20
38 12 0.16
39 2 0.03
40 33 0.45
41 12 0.16
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.30
Consensus pattern (40 bp):
ATGAGACACTGGGTGCCAAATTATTACTTCGGATTATCCG
Found at i:49155901 original size:35 final size:34
Alignment explanation
Indices: 49155821--49155904 Score: 98
Period size: 35 Copynumber: 2.4 Consensus size: 34
49155811 TTCAAGGTAT
* * *
49155821 CACCACGAAAGACCTGTATACCATTTACATGGTGG
1 CACC-CGAAGGACCTATATACCATTTACACGGTGG
49155856 CACCCTGAAGGACCTATATACCATTTACACGGTGTTG
1 CACCC-GAAGGACCTATATACCATTTACACGGTG--G
49155893 C-CCCGAAGGACC
1 CACCCGAAGGACC
49155905 AGTAGATAAC
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
34 1 0.02
35 37 0.86
36 3 0.07
37 2 0.05
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.21
Consensus pattern (34 bp):
CACCCGAAGGACCTATATACCATTTACACGGTGG
Found at i:49166783 original size:2 final size:2
Alignment explanation
Indices: 49166776--49166810 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
49166766 GCGGTTCGCT
49166776 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
49166811 TCCCCCCCCC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:49178130 original size:70 final size:69
Alignment explanation
Indices: 49178017--49178220 Score: 232
Period size: 70 Copynumber: 2.9 Consensus size: 69
49178007 GGCTCGTAGG
* * *
49178017 TTCAATACCGCAGCCTCCAAAACAGTTAGTGAAAGCTCAAGCTCCCAGCTATAATCTTAGAA-CT
1 TTCAATACCGCAGCCTCCAAAATAGTTAGCGAGAGCTC-AGCTCCCAGCTATAATCTTA-AAGCT
* *
49178081 CGCGAG
64 CGCAAA
* ** * *
49178087 TTCAGTATTGCAGCCTCTAAAATAGTTAGCGAGAGCTACAGCTCCCAACTATAATCTTAAAGCTC
1 TTCAATACCGCAGCCTCCAAAATAGTTAGCGAGAGCT-CAGCTCCCAGCTATAATCTTAAAGCTC
49178152 GCAAA
65 GCAAA
* * * *
49178157 TTCAATACCGCAGCCTCCAAAATAATTAGCGAGAGCTCAGGCT-CCAGATGTAATCTTAAGGCTC
1 TTCAATACCGCAGCCTCCAAAATAGTTAGCGAGAGCTCA-GCTCCCAGCTATAATCTTAAAGCTC
49178221 ATAGCCTCTA
Statistics
Matches: 112, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
69 21 0.19
70 90 0.80
71 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (69 bp):
TTCAATACCGCAGCCTCCAAAATAGTTAGCGAGAGCTCAGCTCCCAGCTATAATCTTAAAGCTCG
CAAA
Found at i:49181331 original size:33 final size:33
Alignment explanation
Indices: 49181284--49181359 Score: 89
Period size: 33 Copynumber: 2.3 Consensus size: 33
49181274 GGACAGTGAG
* * * * *
49181284 GGGAGCTTGCGATATCAGCTCATAGGAGTTGAA
1 GGGAGCTCGCGATATCAACCCACAAGAGTTGAA
*
49181317 GGGAGCTCGTGATATCAACCCACAAGAGTTGAA
1 GGGAGCTCGCGATATCAACCCACAAGAGTTGAA
*
49181350 GGGAGTTCGC
1 GGGAGCTCGC
49181360 AGTCCTAACT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.28, C:0.18, G:0.33, T:0.21
Consensus pattern (33 bp):
GGGAGCTCGCGATATCAACCCACAAGAGTTGAA
Found at i:49181512 original size:20 final size:20
Alignment explanation
Indices: 49181489--49181526 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
49181479 GAATAGTAGG
*
49181489 GTCAAGTCATGAACAGTGGA
1 GTCAAATCATGAACAGTGGA
49181509 GTCAAATCATGAACAGTG
1 GTCAAATCATGAACAGTG
49181527 ATAATATGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (20 bp):
GTCAAATCATGAACAGTGGA
Found at i:49183157 original size:23 final size:24
Alignment explanation
Indices: 49183113--49183168 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 24
49183103 ACTTCCGTGT
49183113 ATTCATTCTAGCACTTAAGTGC-A
1 ATTCATTCTAGCACTTAAGTGCAA
*
49183136 ATTCATTCTAGCAC-TATGGTGCAA
1 ATTCATTCTAGCACTTA-AGTGCAA
*
49183160 ATTTATTCT
1 ATTCATTCT
49183169 GGTACTTCGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
22 2 0.07
23 18 0.62
24 9 0.31
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (24 bp):
ATTCATTCTAGCACTTAAGTGCAA
Found at i:49185545 original size:21 final size:21
Alignment explanation
Indices: 49185503--49185546 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
49185493 TTTAAGGGCC
* *
49185503 AAAGTATTTAAAAATTTATTA
1 AAAGTATTGAAAAAATTATTA
49185524 AAAGTATTGAAATAAATT-TTA
1 AAAGTATTGAAA-AAATTATTA
49185545 AA
1 AA
49185547 TTTTTTTGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.55, C:0.00, G:0.07, T:0.39
Consensus pattern (21 bp):
AAAGTATTGAAAAAATTATTA
Found at i:49190857 original size:16 final size:15
Alignment explanation
Indices: 49190817--49190857 Score: 52
Period size: 13 Copynumber: 2.9 Consensus size: 15
49190807 TTTCAATTTT
49190817 ATTTT-AATAATAAA
1 ATTTTAAATAATAAA
49190831 A-TTTAAA-AATAATA
1 ATTTTAAATAATAA-A
49190845 ATTTTAAATAATA
1 ATTTTAAATAATA
49190858 TTCTTTATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
13 8 0.35
14 5 0.22
15 6 0.26
16 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATTTTAAATAATAAA
Found at i:49194413 original size:47 final size:47
Alignment explanation
Indices: 49194343--49194436 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
49194333 CCGCCATAGG
*
49194343 CCTATCTTAAACTATGCAAGGAATTAATTGAGTTGAATCTATGCTTA
1 CCTATCTTAAACTATGCAAGGAATTAATTGAGTCGAATCTATGCTTA
* * *
49194390 CCTATCTTGAACTATGCAGGGAATTAATTGAGTCGAATCTGTGCTTA
1 CCTATCTTAAACTATGCAAGGAATTAATTGAGTCGAATCTATGCTTA
49194437 GAAACTGGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (47 bp):
CCTATCTTAAACTATGCAAGGAATTAATTGAGTCGAATCTATGCTTA
Found at i:49202111 original size:268 final size:268
Alignment explanation
Indices: 49201634--49202179 Score: 1092
Period size: 268 Copynumber: 2.0 Consensus size: 268
49201624 ATATTAATTG
49201634 CCAAACATGAAGAGCATGCATTATTCACCAATAAATGGAATTAAACCTAATCTAACGATTGAACT
1 CCAAACATGAAGAGCATGCATTATTCACCAATAAATGGAATTAAACCTAATCTAACGATTGAACT
49201699 AGTTATTTCAGATTAATATTTCTCAAAAACTTATCAAAACATCCGTAGCACATACCTTCAACAAC
66 AGTTATTTCAGATTAATATTTCTCAAAAACTTATCAAAACATCCGTAGCACATACCTTCAACAAC
49201764 AATATAATTAGGGTTGCAAAGATAGGTTTAGCTCTGACAAGAACCACTGTACAAGCTCTAACCAC
131 AATATAATTAGGGTTGCAAAGATAGGTTTAGCTCTGACAAGAACCACTGTACAAGCTCTAACCAC
49201829 TTACCATCACAATGTAACACAGAGTAATTTGGGGCAAACAAGAAATATTGGGCCCATTCGTATTT
196 TTACCATCACAATGTAACACAGAGTAATTTGGGGCAAACAAGAAATATTGGGCCCATTCGTATTT
49201894 GGACAACT
261 GGACAACT
49201902 CCAAACATGAAGAGCATGCATTATTCACCAATAAATGGAATTAAACCTAATCTAACGATTGAACT
1 CCAAACATGAAGAGCATGCATTATTCACCAATAAATGGAATTAAACCTAATCTAACGATTGAACT
49201967 AGTTATTTCAGATTAATATTTCTCAAAAACTTATCAAAACATCCGTAGCACATACCTTCAACAAC
66 AGTTATTTCAGATTAATATTTCTCAAAAACTTATCAAAACATCCGTAGCACATACCTTCAACAAC
49202032 AATATAATTAGGGTTGCAAAGATAGGTTTAGCTCTGACAAGAACCACTGTACAAGCTCTAACCAC
131 AATATAATTAGGGTTGCAAAGATAGGTTTAGCTCTGACAAGAACCACTGTACAAGCTCTAACCAC
49202097 TTACCATCACAATGTAACACAGAGTAATTTGGGGCAAACAAGAAATATTGGGCCCATTCGTATTT
196 TTACCATCACAATGTAACACAGAGTAATTTGGGGCAAACAAGAAATATTGGGCCCATTCGTATTT
49202162 GGACAACT
261 GGACAACT
49202170 CCAAACATGA
1 CCAAACATGA
49202180 TCATAAATAA
Statistics
Matches: 278, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
268 278 1.00
ACGTcount: A:0.39, C:0.21, G:0.14, T:0.26
Consensus pattern (268 bp):
CCAAACATGAAGAGCATGCATTATTCACCAATAAATGGAATTAAACCTAATCTAACGATTGAACT
AGTTATTTCAGATTAATATTTCTCAAAAACTTATCAAAACATCCGTAGCACATACCTTCAACAAC
AATATAATTAGGGTTGCAAAGATAGGTTTAGCTCTGACAAGAACCACTGTACAAGCTCTAACCAC
TTACCATCACAATGTAACACAGAGTAATTTGGGGCAAACAAGAAATATTGGGCCCATTCGTATTT
GGACAACT
Found at i:49209238 original size:18 final size:18
Alignment explanation
Indices: 49209193--49209239 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
49209183 TCGATTTGGG
49209193 AGGAGCTGGAGTTGAGGC
1 AGGAGCTGGAGTTGAGGC
*
49209211 AGCAGCTGGAGTTG-GAGC
1 AGGAGCTGGAGTTGAG-GC
*
49209229 AGGAGGTGGAG
1 AGGAGCTGGAG
49209240 CAGATGGGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 1 0.04
18 24 0.96
ACGTcount: A:0.23, C:0.11, G:0.51, T:0.15
Consensus pattern (18 bp):
AGGAGCTGGAGTTGAGGC
Found at i:49217708 original size:26 final size:27
Alignment explanation
Indices: 49217666--49217725 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 27
49217656 CCATTTAACT
* *
49217666 GATAGTCCTTACGGACTTT-CACAAAA
1 GATAGTCCTCACAGACTTTCCACAAAA
49217692 GATAGTCCTCACAGACTTTCCACAAAA
1 GATAGTCCTCACAGACTTTCCACAAAA
49217719 GATAGTC
1 GATAGTC
49217726 ATGATAGACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 17 0.55
27 14 0.45
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (27 bp):
GATAGTCCTCACAGACTTTCCACAAAA
Found at i:49217734 original size:27 final size:27
Alignment explanation
Indices: 49217679--49217741 Score: 85
Period size: 27 Copynumber: 2.4 Consensus size: 27
49217669 AGTCCTTACG
*
49217679 GACTTT-CACAAAAGATAGTCCTCACA
1 GACTTTCCACAAAAGATAGTCATCACA
* *
49217705 GACTTTCCACAAAAGATAGTCATGATA
1 GACTTTCCACAAAAGATAGTCATCACA
49217732 GAC-TTCCACA
1 GACTTTCCACA
49217742 TTAGATTGTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.39
27 20 0.61
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (27 bp):
GACTTTCCACAAAAGATAGTCATCACA
Found at i:49217747 original size:26 final size:26
Alignment explanation
Indices: 49217679--49217765 Score: 93
Period size: 26 Copynumber: 3.3 Consensus size: 26
49217669 AGTCCTTACG
* * *
49217679 GACTTTCACAAAAGATAGTCCTCACA
1 GACTTCCACAAAAGATAGTCATGACA
*
49217705 GACTTTCCACAAAAGATAGTCATGATA
1 GAC-TTCCACAAAAGATAGTCATGACA
** * *
49217732 GACTTCCACATTAGATTGTCTTGACA
1 GACTTCCACAAAAGATAGTCATGACA
49217758 GACTTCCA
1 GACTTCCA
49217766 TATTTGCGGT
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 29 0.57
27 22 0.43
ACGTcount: A:0.34, C:0.24, G:0.14, T:0.28
Consensus pattern (26 bp):
GACTTCCACAAAAGATAGTCATGACA
Found at i:49224731 original size:27 final size:27
Alignment explanation
Indices: 49224695--49224942 Score: 236
Period size: 27 Copynumber: 9.2 Consensus size: 27
49224685 CTAATAGATG
49224695 AAAATGACTGAAATACCCCCATAAGGT
1 AAAATGACTGAAATACCCCCATAAGGT
*
49224722 AAAATGACTGAAATACTCCCAT-AGAGT
1 AAAATGACTGAAATACCCCCATAAG-GT
* *
49224749 AAAATGACTGAAATACTCTCATAAGGT
1 AAAATGACTGAAATACCCCCATAAGGT
* * *
49224776 AAAATAACTGAAATAGCCTCAT-AGAGT
1 AAAATGACTGAAATACCCCCATAAG-GT
** * *
49224803 AAAATGACCAAAATAACCCCATAGGGT
1 AAAATGACTGAAATACCCCCATAAGGT
* **
49224830 AAAATGA-TCAAAATACCCCCATTGGGT
1 AAAATGACT-GAAATACCCCCATAAGGT
* * *
49224857 AAAAT-AATCGAAATACCCTCATAGGGT
1 AAAATGACT-GAAATACCCCCATAAGGT
* * * *
49224884 AAAATAACCGAAATACCCCTATAGGGT
1 AAAATGACTGAAATACCCCCATAAGGT
49224911 AAAATGACTGAAATACCCCCAT-AGGAT
1 AAAATGACTGAAATACCCCCATAAGG-T
49224938 AAAAT
1 AAAAT
49224943 ACTATTATAC
Statistics
Matches: 188, Mismatches: 25, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.04
27 177 0.94
28 4 0.02
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.21
Consensus pattern (27 bp):
AAAATGACTGAAATACCCCCATAAGGT
Found at i:49224763 original size:54 final size:53
Alignment explanation
Indices: 49224695--49224972 Score: 262
Period size: 54 Copynumber: 5.2 Consensus size: 53
49224685 CTAATAGATG
*
49224695 AAAATGACTGAAATACCCCCATAAGGTAAAATGACTGAAATACTCCCATAGAGT
1 AAAATGACTGAAATACCCCCATAAGGTAAAATAACTGAAATAC-CCCATAGAGT
* * *
49224749 AAAATGACTGAAATACTCTCATAAGGTAAAATAACTGAAATAGCCTCATAGAGT
1 AAAATGACTGAAATACCCCCATAAGGTAAAATAACTGAAATA-CCCCATAGAGT
** * * * * * *
49224803 AAAATGACCAAAATAACCCCATAGGGTAAAATGA-TCAAAATACCCCCATTGGGT
1 AAAATGACTGAAATACCCCCATAAGGTAAAATAACT-GAAATA-CCCCATAGAGT
* * * * *
49224857 AAAAT-AATCGAAATACCCTCATAGGGTAAAATAACCGAAATACCCCTATAGGGT
1 AAAATGACT-GAAATACCCCCATAAGGTAAAATAACTGAAATACCCC-ATAGAGT
*
49224911 AAAATGACTGAAATACCCCCAT-AGGATAAAAT-ACT-ATTATACCCC-TAGGAGAT
1 AAAATGACTGAAATACCCCCATAAGG-TAAAATAACTGA-AATACCCCATA-GAG-T
49224964 AAAATGACT
1 AAAATGACT
49224973 ATTATGGCCT
Statistics
Matches: 183, Mismatches: 31, Indels: 21
0.78 0.13 0.09
Matches are distributed among these distances:
51 2 0.01
52 3 0.02
53 27 0.15
54 148 0.81
55 3 0.02
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.21
Consensus pattern (53 bp):
AAAATGACTGAAATACCCCCATAAGGTAAAATAACTGAAATACCCCATAGAGT
Found at i:49224817 original size:81 final size:79
Alignment explanation
Indices: 49224634--49224943 Score: 290
Period size: 81 Copynumber: 3.8 Consensus size: 79
49224624 AAACCCCAAA
* * ** *
49224634 ATAG-GTAAAATGACCAAAATACCCC-TGAAGTGTAAAATGACT-AATTTACCTCTAATAGATGA
1 ATAGAGTAAAATGACCAAAATACCCCAT--AGGGTAAAATGACTGAA-ATACC-CCCATAGGT-A
* *
49224696 AAATGACTGAAATACCCCC
61 AAATAACTGAAATACCCTC
** * * *
49224715 ATA-AGGTAAAATGACTGAAATACTCCCATAGAGTAAAATGACTGAAATACTCTCATAAGGTAAA
1 ATAGA-GTAAAATGACCAAAATAC-CCCATAGGGTAAAATGACTGAAATACCCCCAT-AGGTAAA
*
49224779 ATAACTGAAATAGCCTC
63 ATAACTGAAATACCCTC
* *
49224796 ATAGAGTAAAATGACCAAAATAACCCCATAGGGTAAAATGA-TCAAAATACCCCCATTGGGTAAA
1 ATAGAGTAAAATGACCAAAAT-ACCCCATAGGGTAAAATGACT-GAAATACCCCCA-TAGGTAAA
49224860 ATAA-TCGAAATACCCTC
63 ATAACT-GAAATACCCTC
* * *
49224877 ATAGGGTAAAATAACCGAAATACCCCTATAGGGTAAAATGACTGAAATACCCCCATAGGATAAAA
1 ATAGAGTAAAATGACCAAAATACCCC-ATAGGGTAAAATGACTGAAATACCCCCATAGG-TAAAA
49224942 TA
64 TA
49224944 CTATTATACC
Statistics
Matches: 192, Mismatches: 23, Indels: 28
0.79 0.09 0.12
Matches are distributed among these distances:
80 10 0.05
81 136 0.71
82 40 0.21
83 5 0.03
84 1 0.01
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.22
Consensus pattern (79 bp):
ATAGAGTAAAATGACCAAAATACCCCATAGGGTAAAATGACTGAAATACCCCCATAGGTAAAATA
ACTGAAATACCCTC
Found at i:49225398 original size:56 final size:56
Alignment explanation
Indices: 49225309--49225509 Score: 296
Period size: 56 Copynumber: 3.6 Consensus size: 56
49225299 TATTGCACTG
*
49225309 CACTGTTACTATATTGGGCTAAGACCCACACTGATTCTGTATTGGGCTAAGGCCCA
1 CACTGTTACTATATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCA
* * * *
49225365 CAGTGTTACTGTATTGGGCTAAGGCCCATACTGATTCTGTATTGGGCTAAGGCTCA
1 CACTGTTACTATATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCA
* *
49225421 CACTGATT-CTATATTGGGCTAAGGCCCACACTGATTTTGAATTGGGCTAAGGCCCA
1 CACTG-TTACTATATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCA
* * *
49225477 CACTGTTACTGTATTGGGCTAAAGCCCATACTG
1 CACTGTTACTATATTGGGCTAAGGCCCACACTG
49225510 TACTGCCACT
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
55 2 0.02
56 125 0.97
57 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (56 bp):
CACTGTTACTATATTGGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCA
Found at i:49225510 original size:28 final size:28
Alignment explanation
Indices: 49225320--49225509 Score: 267
Period size: 28 Copynumber: 6.8 Consensus size: 28
49225310 ACTGTTACTA
*
49225320 TATTGGGCTAAGACCCACACTGATTCTG
1 TATTGGGCTAAGGCCCACACTGATTCTG
*
49225348 TATTGGGCTAAGGCCCACAGTG-TTACTG
1 TATTGGGCTAAGGCCCACACTGATT-CTG
*
49225376 TATTGGGCTAAGGCCCATACTGATTCTG
1 TATTGGGCTAAGGCCCACACTGATTCTG
* *
49225404 TATTGGGCTAAGGCTCACACTGATTCTA
1 TATTGGGCTAAGGCCCACACTGATTCTG
*
49225432 TATTGGGCTAAGGCCCACACTGATTTTG
1 TATTGGGCTAAGGCCCACACTGATTCTG
*
49225460 AATTGGGCTAAGGCCCACACTG-TTACTG
1 TATTGGGCTAAGGCCCACACTGATT-CTG
* *
49225488 TATTGGGCTAAAGCCCATACTG
1 TATTGGGCTAAGGCCCACACTG
49225510 TACTGCCACT
Statistics
Matches: 144, Mismatches: 15, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
27 4 0.03
28 138 0.96
29 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (28 bp):
TATTGGGCTAAGGCCCACACTGATTCTG
Found at i:49228694 original size:22 final size:20
Alignment explanation
Indices: 49228637--49228695 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
49228627 TCTTTGTTCC
*
49228637 TAATCCTAAAACAAAATTAAA
1 TAATCCTAAAA-GAAATTAAA
* *
49228658 TCATCCTTAAAGAAATTAATA
1 TAATCCTAAAAGAAATTAA-A
49228679 TAATCCATAAAAGAAAT
1 TAATCC-TAAAAGAAAT
49228696 ATTTAATTCA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
20 7 0.23
21 15 0.48
22 9 0.29
ACGTcount: A:0.56, C:0.14, G:0.03, T:0.27
Consensus pattern (20 bp):
TAATCCTAAAAGAAATTAAA
Found at i:49229478 original size:20 final size:20
Alignment explanation
Indices: 49229451--49229510 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
49229441 TTTTTGATGT
*
49229451 GTTAAAATAATTTTAACTTG
1 GTTAAAATCATTTTAACTTG
* * *
49229471 GTTGAAATCATTTTGATTTG
1 GTTAAAATCATTTTAACTTG
49229491 GTTAAAATCATTTTAACTTG
1 GTTAAAATCATTTTAACTTG
49229511 ATTTTAAAAT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (20 bp):
GTTAAAATCATTTTAACTTG
Found at i:49231804 original size:142 final size:142
Alignment explanation
Indices: 49231619--49231902 Score: 523
Period size: 142 Copynumber: 2.0 Consensus size: 142
49231609 CCAAATTCTT
49231619 TAAACATATATGATGATGGACATGAATTTACTTCAAAGCACTTAAAAATTGAATATATATCCATA
1 TAAACATATATGATGATGGACATGAATTTACTTCAAAGCACTTAAAAATTGAATATATATCCATA
*
49231684 CCGAAAAAATAACAATTTCAACAAATGTCCATCAAACCAATTTAACATAAAATCATAATTGAATC
66 CCGAAAAAATAACAACTTCAACAAATGTCCATCAAACCAATTTAACATAAAATCATAATTGAATC
49231749 CATAAAAAAAAA
131 CATAAAAAAAAA
*
49231761 TAAACATATATGATGATTGACATGAATTTACTTCAAAGCACTTAAAAATTGAATATATATCCATA
1 TAAACATATATGATGATGGACATGAATTTACTTCAAAGCACTTAAAAATTGAATATATATCCATA
* *
49231826 CCGAAAAAATAACAACTTCAACAAGTGTCCATCAAACCAATTTAACATAAAATCATAATTGAATT
66 CCGAAAAAATAACAACTTCAACAAATGTCCATCAAACCAATTTAACATAAAATCATAATTGAATC
*
49231891 CATAAATAAAAA
131 CATAAAAAAAAA
49231903 GTATCAACAA
Statistics
Matches: 137, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
142 137 1.00
ACGTcount: A:0.50, C:0.15, G:0.07, T:0.27
Consensus pattern (142 bp):
TAAACATATATGATGATGGACATGAATTTACTTCAAAGCACTTAAAAATTGAATATATATCCATA
CCGAAAAAATAACAACTTCAACAAATGTCCATCAAACCAATTTAACATAAAATCATAATTGAATC
CATAAAAAAAAA
Found at i:49233043 original size:8 final size:9
Alignment explanation
Indices: 49233030--49233091 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
49233020 TTTGGTTAAA
49233030 AATTAACC-
1 AATTAACCG
49233038 AATTAACCG
1 AATTAACCG
*
49233047 ATTTAACCG
1 AATTAACCG
*
49233056 ATTTAACCG
1 AATTAACCG
*
49233065 -ATTAACTG
1 AATTAACCG
*
49233073 ATTTAACCG
1 AATTAACCG
*
49233082 ATTTAACCG
1 AATTAACCG
49233091 A
1 A
49233092 TTTGAATCAC
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
8 14 0.30
9 33 0.70
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.31
Consensus pattern (9 bp):
AATTAACCG
Found at i:49233054 original size:9 final size:9
Alignment explanation
Indices: 49233040--49233094 Score: 94
Period size: 9 Copynumber: 6.2 Consensus size: 9
49233030 AATTAACCAA
49233040 TTAACCGAT
1 TTAACCGAT
49233049 TTAACCGAT
1 TTAACCGAT
49233058 TTAACCGA-
1 TTAACCGAT
*
49233066 TTAACTGAT
1 TTAACCGAT
49233075 TTAACCGAT
1 TTAACCGAT
49233084 TTAACCGAT
1 TTAACCGAT
49233093 TT
1 TT
49233095 GAATCACTAC
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
8 7 0.16
9 36 0.84
ACGTcount: A:0.33, C:0.20, G:0.11, T:0.36
Consensus pattern (9 bp):
TTAACCGAT
Found at i:49233054 original size:17 final size:17
Alignment explanation
Indices: 49233032--49233094 Score: 74
Period size: 17 Copynumber: 3.6 Consensus size: 17
49233022 TGGTTAAAAA
*
49233032 TTAACCAATTAACCGAT
1 TTAACCATTTAACCGAT
49233049 TTAACCGATTTAACCGA-
1 TTAACC-ATTTAACCGAT
*
49233066 TTAACTGATTTAACCGAT
1 TTAAC-CATTTAACCGAT
49233084 TTAACCGATTT
1 TTAACC-ATTT
49233095 GAATCACTAC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 21 0.54
18 18 0.46
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.35
Consensus pattern (17 bp):
TTAACCATTTAACCGAT
Found at i:49233090 original size:26 final size:26
Alignment explanation
Indices: 49233032--49233093 Score: 106
Period size: 26 Copynumber: 2.4 Consensus size: 26
49233022 TGGTTAAAAA
*
49233032 TTAACCAATTAACCGATTTAACCGAT
1 TTAACCGATTAACCGATTTAACCGAT
*
49233058 TTAACCGATTAACTGATTTAACCGAT
1 TTAACCGATTAACCGATTTAACCGAT
49233084 TTAACCGATT
1 TTAACCGATT
49233094 TGAATCACTA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.34
Consensus pattern (26 bp):
TTAACCGATTAACCGATTTAACCGAT
Found at i:49233142 original size:37 final size:37
Alignment explanation
Indices: 49233092--49233236 Score: 219
Period size: 37 Copynumber: 4.1 Consensus size: 37
49233082 ATTTAACCGA
49233092 TTTGAATCACTACATAATTAAAAAAATTACATAAGTC
1 TTTGAATCACTACATAATTAAAAAAATTACATAAGTC
*
49233129 TTTGAATCACTACATAATTAAAAACATTACATAAGTC
1 TTTGAATCACTACATAATTAAAAAAATTACATAAGTC
49233166 TTTGAATCACTACATAATT---AAAA--ACATAAGTC
1 TTTGAATCACTACATAATTAAAAAAATTACATAAGTC
* * *
49233198 TTTAAATCACTATATAATTAAAAACATTACATAAGTC
1 TTTGAATCACTACATAATTAAAAAAATTACATAAGTC
49233235 TT
1 TT
49233237 AAAATTAACA
Statistics
Matches: 98, Mismatches: 5, Indels: 10
0.87 0.04 0.09
Matches are distributed among these distances:
32 26 0.27
34 3 0.03
35 3 0.03
37 66 0.67
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (37 bp):
TTTGAATCACTACATAATTAAAAAAATTACATAAGTC
Found at i:49233144 original size:20 final size:20
Alignment explanation
Indices: 49233119--49233182 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 20
49233109 TTAAAAAAAT
49233119 TACATAAGTCTTTGAATCAC
1 TACATAAGTCTTTGAATCAC
** * *
49233139 TACATAA---TTAAAAACAT
1 TACATAAGTCTTTGAATCAC
49233156 TACATAAGTCTTTGAATCAC
1 TACATAAGTCTTTGAATCAC
49233176 TACATAA
1 TACATAA
49233183 TTAAAAACAT
Statistics
Matches: 33, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
17 13 0.39
20 20 0.61
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (20 bp):
TACATAAGTCTTTGAATCAC
Found at i:49233161 original size:17 final size:17
Alignment explanation
Indices: 49233102--49233162 Score: 50
Period size: 17 Copynumber: 3.4 Consensus size: 17
49233092 TTTGAATCAC
*
49233102 TACATAATTAAAAAAAT
1 TACATAATTAAAAACAT
** * *
49233119 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
49233139 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
49233156 TACATAA
1 TACATAA
49233163 GTCTTTGAAT
Statistics
Matches: 32, Mismatches: 9, Indels: 6
0.68 0.19 0.13
Matches are distributed among these distances:
17 20 0.62
20 12 0.38
ACGTcount: A:0.52, C:0.13, G:0.03, T:0.31
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:49233215 original size:69 final size:71
Alignment explanation
Indices: 49233092--49233236 Score: 231
Period size: 69 Copynumber: 2.0 Consensus size: 71
49233082 ATTTAACCGA
*
49233092 TTTGAATCACTACATAATTAAAAAAATTACATAAGTCTTTGAATCACTACATAATTAAAAACATT
1 TTTGAATCACTACATAATT--AAAAA-TACATAAGTCTTTAAATCACTACATAATTAAAAACATT
49233157 ACATAAGTC
63 ACATAAGTC
*
49233166 TTTGAATCACTACATAATT-AAAA-ACATAAGTCTTTAAATCACTATATAATTAAAAACATTACA
1 TTTGAATCACTACATAATTAAAAATACATAAGTCTTTAAATCACTACATAATTAAAAACATTACA
49233229 TAAGTC
66 TAAGTC
49233235 TT
1 TT
49233237 AAAATTAACA
Statistics
Matches: 69, Mismatches: 2, Indels: 5
0.91 0.03 0.07
Matches are distributed among these distances:
69 46 0.67
71 4 0.06
74 19 0.28
ACGTcount: A:0.47, C:0.14, G:0.05, T:0.34
Consensus pattern (71 bp):
TTTGAATCACTACATAATTAAAAATACATAAGTCTTTAAATCACTACATAATTAAAAACATTACA
TAAGTC
Found at i:49233250 original size:69 final size:68
Alignment explanation
Indices: 49233120--49233270 Score: 205
Period size: 69 Copynumber: 2.2 Consensus size: 68
49233110 TAAAAAAATT
* ** *
49233120 ACATAAGTCTTTGAATCACTACATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATT
1 ACATAAGTCTTTAAATCACTACATAATTAAAAACATTACATAAGTCTTAAAATAACTACATAATT
49233185 AAAA
66 -AAA
*
49233189 ACATAAGTCTTTAAATCACTATATAATTAAAAACATTACATAAGTCTTAAAATTAAC-ACATAAT
1 ACATAAGTCTTTAAATCACTACATAATTAAAAACATTACATAAGTCTTAAAA-TAACTACATAAT
*
49233253 TGAA
65 TAAA
**
49233257 ATGTAAGTCTTTAA
1 ACATAAGTCTTTAA
49233271 TATTCTCCAT
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
68 14 0.19
69 56 0.77
70 3 0.04
ACGTcount: A:0.47, C:0.14, G:0.06, T:0.33
Consensus pattern (68 bp):
ACATAAGTCTTTAAATCACTACATAATTAAAAACATTACATAAGTCTTAAAATAACTACATAATT
AAA
Found at i:49237184 original size:13 final size:13
Alignment explanation
Indices: 49237166--49237194 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
49237156 TGTTAGAGAC
49237166 TTAGACTTTAGTT
1 TTAGACTTTAGTT
49237179 TTAGACTTTAGTT
1 TTAGACTTTAGTT
49237192 TTA
1 TTA
49237195 TTGGGTTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.24, C:0.07, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGACTTTAGTT
Found at i:49237218 original size:19 final size:19
Alignment explanation
Indices: 49237194--49237310 Score: 65
Period size: 19 Copynumber: 5.5 Consensus size: 19
49237184 CTTTAGTTTT
49237194 ATTGGGTTGGTAAATGGTA
1 ATTGGGTTGGTAAATGGTA
* * *
49237213 ATTGGGTTTGGGTAGACTTTAGTTT
1 ATTGGG-TT-GGTA-A--AT-GGTA
49237238 ATTGGGTTGGTAAATGGTA
1 ATTGGGTTGGTAAATGGTA
* *
49237257 ATTGGGTTTGGGTAGACT-TTAA
1 ATTGGG-TT-GGTA-AATGGT-A
49237279 TTTATTGGGTTGGTAAATGGTA
1 ---ATTGGGTTGGTAAATGGTA
49237301 ATTGGGTTGG
1 ATTGGGTTGG
49237311 GTAATTGGGT
Statistics
Matches: 74, Mismatches: 10, Indels: 28
0.66 0.09 0.25
Matches are distributed among these distances:
19 24 0.32
20 5 0.07
21 9 0.12
22 8 0.11
23 9 0.12
24 5 0.07
25 14 0.19
ACGTcount: A:0.21, C:0.02, G:0.35, T:0.42
Consensus pattern (19 bp):
ATTGGGTTGGTAAATGGTA
Done.