Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 166 of 182
Found at i:50803328 original size:18 final size:18
Alignment explanation
Indices: 50803273--50803329 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
50803263 TCTTGATTTC
*
50803273 TTTTATTTGTTTTTCATT
1 TTTTATTTGTTTCTCATT
* *
50803291 TTTTACTT-TTTCTGATTT
1 TTTTATTTGTTTCTCA-TT
*
50803309 TTTTATTTGTTTCTCCTT
1 TTTTATTTGTTTCTCATT
50803327 TTT
1 TTT
50803330 CGTTGTTTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
17 5 0.16
18 21 0.68
19 5 0.16
ACGTcount: A:0.09, C:0.11, G:0.05, T:0.75
Consensus pattern (18 bp):
TTTTATTTGTTTCTCATT
Found at i:50803351 original size:11 final size:11
Alignment explanation
Indices: 50803307--50803417 Score: 50
Period size: 11 Copynumber: 9.9 Consensus size: 11
50803297 TTTTTCTGAT
50803307 TTTTTTATTTG
1 TTTTTTATTTG
50803318 TTTCTCCTT-TTTCG
1 TTT-T--TTATTT-G
*
50803332 TTGTTTATTTG
1 TTTTTTATTTG
*
50803343 TTTTTTATTTAC
1 TTTTTTATTT-G
*
50803355 TTTTTCA---G
1 TTTTTTATTTG
*
50803363 TTTTTTATTTA
1 TTTTTTATTTG
* * **
50803374 TTTGTCATTCA
1 TTTTTTATTTG
50803385 TTTTTTATTTG
1 TTTTTTATTTG
* *
50803396 TTTTTTGTTTA
1 TTTTTTATTTG
50803407 TTTATTTATTT
1 TTT-TTTATTT
50803418 TTATTATTTA
Statistics
Matches: 73, Mismatches: 17, Indels: 19
0.67 0.16 0.17
Matches are distributed among these distances:
8 6 0.08
11 42 0.58
12 16 0.22
13 4 0.05
14 5 0.07
ACGTcount: A:0.12, C:0.07, G:0.07, T:0.74
Consensus pattern (11 bp):
TTTTTTATTTG
Found at i:50803375 original size:4 final size:4
Alignment explanation
Indices: 50803335--50803435 Score: 54
Period size: 4 Copynumber: 26.2 Consensus size: 4
50803325 TTTTTCGTTG
* * * *
50803335 TTTA TTTG TTT- TTTA TTTA CTTT- TTCA GTTT- TTTA TTTA TTT- GTCA
1 TTTA TTTA TTTA TTTA TTTA -TTTA TTTA -TTTA TTTA TTTA TTTA TTTA
* * * *
50803381 TTCA TTT- TTTA TTTG TTT- TTTG TTTA TTTA TTTA TTTT TATTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA
50803428 -TTA TTTA T
1 TTTA TTTA T
50803436 AATATTTTAT
Statistics
Matches: 76, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
3 18 0.24
4 50 0.66
5 8 0.11
ACGTcount: A:0.17, C:0.04, G:0.05, T:0.74
Consensus pattern (4 bp):
TTTA
Found at i:50803426 original size:13 final size:14
Alignment explanation
Indices: 50803403--50803435 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
50803393 TTGTTTTTTG
50803403 TTTATTTATTTATT-
1 TTTA-TTATTTATTA
50803417 TTTATTATTTATTA
1 TTTATTATTTATTA
50803431 TTTAT
1 TTTAT
50803436 AATATTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (14 bp):
TTTATTATTTATTA
Found at i:50803429 original size:7 final size:7
Alignment explanation
Indices: 50803403--50803435 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
50803393 TTGTTTTTTG
50803403 TTTATTTA
1 TTTA-TTA
50803411 TTTATT-
1 TTTATTA
50803417 TTTATTA
1 TTTATTA
50803424 TTTATTA
1 TTTATTA
50803431 TTTAT
1 TTTAT
50803436 AATATTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.25
7 14 0.58
8 4 0.17
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTATTA
Found at i:50803444 original size:53 final size:53
Alignment explanation
Indices: 50803335--50803462 Score: 122
Period size: 53 Copynumber: 2.4 Consensus size: 53
50803325 TTTTTCGTTG
* * *
50803335 TTTATTTGTTTTTTATTTACTTT-TTCAGTTTTTTATTTATTTGTCATTCATTT
1 TTTATTTGTTTTTTGTTTA-TTTATTCAGTTTTTTATTTATTTGTCATTAATAT
* * *
50803388 TTTATTTGTTTTTTGTTTATTTATTTATTTTTATTATTTATTAT-TTA-TAATAT
1 TTTATTTGTTTTTTGTTTATTTATTCAGTTTT-TTATTTATT-TGTCATTAATAT
*
50803441 TTTA--TGTATTTTTGTATATTTA
1 TTTATTTGT-TTTTTGTTTATTTA
50803463 CTGTAGATTT
Statistics
Matches: 64, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
51 3 0.05
52 16 0.25
53 33 0.52
54 11 0.17
55 1 0.02
ACGTcount: A:0.20, C:0.03, G:0.05, T:0.72
Consensus pattern (53 bp):
TTTATTTGTTTTTTGTTTATTTATTCAGTTTTTTATTTATTTGTCATTAATAT
Found at i:50805541 original size:16 final size:16
Alignment explanation
Indices: 50805507--50805559 Score: 63
Period size: 16 Copynumber: 3.3 Consensus size: 16
50805497 ATGACATTAG
50805507 TCATGCAATACTCAAT
1 TCATGCAATACTCAAT
*
50805523 TCATG-AATACATCATT
1 TCATGCAATAC-TCAAT
* *
50805539 TCATACCATACTCAAT
1 TCATGCAATACTCAAT
50805555 TCATG
1 TCATG
50805560 AGTATATAAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
15 5 0.17
16 21 0.70
17 4 0.13
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.34
Consensus pattern (16 bp):
TCATGCAATACTCAAT
Found at i:50805792 original size:40 final size:41
Alignment explanation
Indices: 50805748--50805845 Score: 135
Period size: 41 Copynumber: 2.4 Consensus size: 41
50805738 ACCAGTTTGG
* * * * *
50805748 CACCCAGTGCCTCATTGGAT-AATTTGAAGTAGTAAATTGA
1 CACCCAGTGTCTCATCGAATAAATCTGAAGTAATAAATTGA
50805788 CACCCAGTGTCTCATCGAATAAATCTGAAGTAATAAATTGA
1 CACCCAGTGTCTCATCGAATAAATCTGAAGTAATAAATTGA
*
50805829 CACCTAGTGTCTCATCG
1 CACCCAGTGTCTCATCG
50805846 GTTAAACCGA
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 17 0.33
41 34 0.67
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (41 bp):
CACCCAGTGTCTCATCGAATAAATCTGAAGTAATAAATTGA
Found at i:50806744 original size:25 final size:26
Alignment explanation
Indices: 50806718--50806796 Score: 76
Period size: 25 Copynumber: 3.1 Consensus size: 26
50806708 CGCATATGTT
50806718 TCTTTCTTCTTTCTCTTTTTC-TTTT
1 TCTTTCTTCTTTCTCTTTTTCGTTTT
* *
50806743 TCTTTCTTTCCTT-TCTGTTTCGTTTT
1 TCTTTC-TTCTTTCTCTTTTTCGTTTT
*
50806769 ACTTTC-TCTCTT-TCTTTTTCGTTATT
1 TCTTTCTTCT-TTCTCTTTTTCGTT-TT
50806795 TC
1 TC
50806797 AGTTACTTAT
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
24 2 0.05
25 25 0.57
26 17 0.39
ACGTcount: A:0.03, C:0.24, G:0.04, T:0.70
Consensus pattern (26 bp):
TCTTTCTTCTTTCTCTTTTTCGTTTT
Found at i:50808637 original size:25 final size:26
Alignment explanation
Indices: 50808584--50808637 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
50808574 TATTTAATTT
*
50808584 AATTTATATAAATTACATAATATATAA
1 AATTTATATAAATTA-ATAATATAAAA
* *
50808611 AATTTATATATATT-ATAATGTAAAA
1 AATTTATATAAATTAATAATATAAAA
50808636 AA
1 AA
50808638 CGGGTTAGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 11 0.46
27 13 0.54
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (26 bp):
AATTTATATAAATTAATAATATAAAA
Found at i:50813290 original size:17 final size:18
Alignment explanation
Indices: 50813268--50813302 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
50813258 AATATAATAG
50813268 GCACAATTAAAT-TTTAA
1 GCACAATTAAATATTTAA
*
50813285 GCACAATTGAATATTTAA
1 GCACAATTAAATATTTAA
50813303 AACCACATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (18 bp):
GCACAATTAAATATTTAA
Found at i:50813680 original size:40 final size:41
Alignment explanation
Indices: 50813625--50813734 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 41
50813615 ACCAGTTTGG
* * *
50813625 CACCCAGTGCCTCATCGGATAATTC-GAAGTAGTAAATTGA
1 CACCCAATGTCTCATCGGATAAATCTGAAGTAGTAAATTGA
*
50813665 CACCCAATGTCTCATCGAATAAATCTGAAGTAGTAAATTGA
1 CACCCAATGTCTCATCGGATAAATCTGAAGTAGTAAATTGA
* *
50813706 CACCC-A-GTCTCATCGGTTAAA-CCGAAGTA
1 CACCCAATGTCTCATCGGATAAATCTGAAGTA
50813735 AATTGGCAAC
Statistics
Matches: 62, Mismatches: 7, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
38 7 0.11
39 13 0.21
40 22 0.35
41 20 0.32
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (41 bp):
CACCCAATGTCTCATCGGATAAATCTGAAGTAGTAAATTGA
Found at i:50826453 original size:22 final size:21
Alignment explanation
Indices: 50826401--50826458 Score: 62
Period size: 23 Copynumber: 2.6 Consensus size: 21
50826391 TTATTGTGAC
*
50826401 TTATTTATGAAAAAAAATTCTA
1 TTATTTAT-AAAAAAAATTATA
* *
50826423 TAAAGTTATAACAAAAAATTATA
1 T-TATTTATAA-AAAAAATTATA
50826446 TTATTTATAAAAA
1 TTATTTATAAAAA
50826459 GTGTTATGTA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
21 3 0.10
22 10 0.34
23 16 0.55
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.38
Consensus pattern (21 bp):
TTATTTATAAAAAAAATTATA
Found at i:50836039 original size:16 final size:17
Alignment explanation
Indices: 50836018--50836055 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
50836008 AATATAAATT
*
50836018 AATATAATTATTATT-A
1 AATATAATTATAATTAA
50836034 AATAT-ATTATAATTAA
1 AATATAATTATAATTAA
50836050 AATATA
1 AATATA
50836056 TAATTTAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AATATAATTATAATTAA
Found at i:50836063 original size:14 final size:15
Alignment explanation
Indices: 50836014--50836065 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
50836004 GTAAAATATA
50836014 AATT-AATATAATTAT
1 AATTAAATAT-ATTAT
*
50836029 TATTAAATATATTAT
1 AATTAAATATATTAT
50836044 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
50836057 AATTTAATA
1 AATTAAATA
50836066 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 4 0.12
15 14 0.44
16 5 0.16
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:50836183 original size:14 final size:15
Alignment explanation
Indices: 50836134--50836185 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
50836124 ATAAAATTTA
50836134 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
50836149 TATTAAATATATTAT
1 AATTAAATATATTAT
50836164 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
50836177 AATTTAATA
1 AATTAAATA
50836186 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:50836190 original size:59 final size:59
Alignment explanation
Indices: 50836005--50836190 Score: 191
Period size: 59 Copynumber: 3.1 Consensus size: 59
50835995 TATGATACTG
* *
50836005 TAAAATATAAATTAATATAATTATTATTAAATATATTATAATTAAAATATATAATTTAA
1 TAAAATTTAAATTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAA
* * * * * * * * *
50836064 TAAAATTCTTAA-TAATCAGT-ATTCTTATATGAATTTACTCA-AATCATAATATATGATACT-A
1 TAAAATT-TAAATTAA-CA-TAATTATTAT-TAAATATA-TTATAATTAAAATATATAAT-TTAA
50836125 TAAAATTTAAATTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAA
1 TAAAATTTAAATTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAA
50836184 TAAAATT
1 TAAAATT
50836191 CTTAATAATN
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 37 0.38
60 23 0.24
61 31 0.32
62 3 0.03
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (59 bp):
TAAAATTTAAATTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAA
Found at i:50855358 original size:2 final size:2
Alignment explanation
Indices: 50855351--50855375 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
50855341 GTCTGATGCA
50855351 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
50855376 TTATCTCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:50865518 original size:125 final size:126
Alignment explanation
Indices: 50865343--50865850 Score: 616
Period size: 126 Copynumber: 4.1 Consensus size: 126
50865333 TAAGGCCAAG
*
50865343 CAAGAACTACTGTAGAAAAA-A-AGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * * * *
50865406 ATCTTGGTTAAAACGTTTTTGACACTATTTTTTCAAAACCGTCTTATCAAAATTACTTTTT
66 ATCCTGCTTAAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * *
50865467 CAAGAACTATTGTAGAAAAAGAGCGTCCACATGATAGC-TTTTTCAGTAATTTTGCTGACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * *
50865531 ATCCTACTTAAAGCATTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTAAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * * * *
50865592 CAGGAACTACTGTAGAAAAAGAGCATTCACGTGTGAGCTTTTTTCAATAACTTTGCTGACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
* * * *
50865657 ATCCTGCTTGAAGCGTTTTTGACATTATTTTTTTAGAATCGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTAAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * ** * *
50865718 -TAGAAACTACCGTAGAAAAATAGCGTTTACGT-AGGAGCTTTTTTCAGTACTTTTGCTGACATT
1 CAAG-AACTACTGTAGAAAAAGAGCGTCCACGTGA-GAGCTTTTTTCAGTAATTTTGCTGACAGT
** * * * * *
50865781 ATATCCTGCTTGAATCGTTTTTGTCACTA-TTTTTCAGAACCATTTTCTCAAAATTATTTTTT
64 GCATCCTGCTTAAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
50865843 CAA-AACTA
1 CAAGAACTA
50865851 TTTTATTAAA
Statistics
Matches: 328, Mismatches: 50, Indels: 12
0.84 0.13 0.03
Matches are distributed among these distances:
124 24 0.07
125 140 0.43
126 164 0.50
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (126 bp):
CAAGAACTACTGTAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGC
ATCCTGCTTAAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:50865818 original size:251 final size:249
Alignment explanation
Indices: 50865346--50865844 Score: 617
Period size: 251 Copynumber: 2.0 Consensus size: 249
50865336 GGCCAAGCAA
* * *
50865346 GAACTACTGTAGAAAAAAAGTCCACGTGAGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATCTT
1 GAACTACTGTAGAAAAAAAGTCCACGTGAGAGCTTTTTTCAATAACTTTGCTGACAGTGCATCCT
*
50865411 GGTTAAAACGTTTTTGACACTATTTTTTCAAAACCGTCTTATCAAAATTACTTTTTCAAGAACTA
66 GCTTAAAACGTTTTTGACACTATTTTTTCAAAACCGTCTTATCAAAATTACTTTTTCAAGAACTA
** * *
50865476 TTGTAGAAAAAGAGCGTCCACATGATAGCTTTTTCAGTAATTTTGCTGACAGTGCATCCTACTTA
131 CCGTAGAAAAAGAGCGTCCACATGAGAGCTTTTTCAGTAATTTTGCTGACAGTACATCCTACTTA
**
50865541 AAGCATTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTTTCAG
196 AAGCATTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAG
* * *
50865595 GAACTACTGTAGAAAAAGAGCATTCACGTGTGAGCTTTTTTCAATAACTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAAAG--TCCACGTGAGAGCTTTTTTCAATAACTTTGCTGACAGTGCATC
* * * * * * * **
50865660 CTGCTTGAAGCGTTTTTGACATTATTTTTTTAGAATCGTCTTCTCAAAATTA-TTTTTTTAGAAA
64 CTGCTTAAAACGTTTTTGACACTATTTTTTCAAAACCGTCTTATCAAAATTACTTTTTCAAG-AA
* ** * * * *
50865724 CTACCGTAGAAAAATAGCGTTTACGT-AGGAGCTTTTTTCAGTACTTTTGCTGACATTATATCCT
128 CTACCGTAGAAAAAGAGCGTCCACATGA-GAGC-TTTTTCAGTAATTTTGCTGACAGTACATCCT
* * * * * *
50865788 GCTTGAATCGTTTTTGTCACTA-TTTTTCAGAACCATTTTCTCAAAATTATTTTTTCA
191 ACTTAAAGCATTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCA
50865845 AAACTATTTT
Statistics
Matches: 210, Mismatches: 35, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
249 19 0.09
250 8 0.04
251 139 0.66
252 44 0.21
ACGTcount: A:0.29, C:0.17, G:0.15, T:0.39
Consensus pattern (249 bp):
GAACTACTGTAGAAAAAAAGTCCACGTGAGAGCTTTTTTCAATAACTTTGCTGACAGTGCATCCT
GCTTAAAACGTTTTTGACACTATTTTTTCAAAACCGTCTTATCAAAATTACTTTTTCAAGAACTA
CCGTAGAAAAAGAGCGTCCACATGAGAGCTTTTTCAGTAATTTTGCTGACAGTACATCCTACTTA
AAGCATTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAG
Found at i:50865844 original size:28 final size:28
Alignment explanation
Indices: 50865810--50865875 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
50865800 TTTGTCACTA
*
50865810 TTTTTCAGAACCATTTTCTCAAAATTAT
1 TTTTTCAGAACCATTTTATCAAAATTAT
* * *
50865838 TTTTTCAAAACTATTTTATTAAAATTAT
1 TTTTTCAGAACCATTTTATCAAAATTAT
50865866 TTTTTCAGAA
1 TTTTTCAGAA
50865876 ACTACTGTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.35, C:0.12, G:0.03, T:0.50
Consensus pattern (28 bp):
TTTTTCAGAACCATTTTATCAAAATTAT
Found at i:50865845 original size:14 final size:14
Alignment explanation
Indices: 50865822--50865872 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
50865812 TTTCAGAACC
*
50865822 ATTTTCTCAAAATT
1 ATTTTTTCAAAATT
*
50865836 ATTTTTTCAAAACT
1 ATTTTTTCAAAATT
50865850 ATTTTATT-AAAATT
1 ATTTT-TTCAAAATT
50865864 ATTTTTTCA
1 ATTTTTTCA
50865873 GAAACTACTG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
13 2 0.06
14 28 0.88
15 2 0.06
ACGTcount: A:0.35, C:0.10, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTTTTCAAAATT
Found at i:50868199 original size:20 final size:22
Alignment explanation
Indices: 50868161--50868208 Score: 66
Period size: 20 Copynumber: 2.3 Consensus size: 22
50868151 ACTCTAAGCA
50868161 CTAAA-TCTACAATCTCAAACC
1 CTAAACTCTACAATCTCAAACC
*
50868182 CTAAACTCTA-AA-CTCAAATC
1 CTAAACTCTACAATCTCAAACC
50868202 CTAAACT
1 CTAAACT
50868209 TGTAGCCCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 14 0.56
21 7 0.28
22 4 0.16
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.25
Consensus pattern (22 bp):
CTAAACTCTACAATCTCAAACC
Found at i:50874895 original size:21 final size:23
Alignment explanation
Indices: 50874871--50874919 Score: 61
Period size: 21 Copynumber: 2.3 Consensus size: 23
50874861 ACTTGATTTT
50874871 ATAATTTTATATT-A-ATTAAAA
1 ATAATTTTATATTAATATTAAAA
50874892 ATAA--TTATATTAATATTAAAA
1 ATAATTTTATATTAATATTAAAA
*
50874913 AAAATTT
1 ATAATTT
50874920 CCTCCCCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
19 7 0.30
20 1 0.04
21 14 0.61
23 1 0.04
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
ATAATTTTATATTAATATTAAAA
Found at i:50876848 original size:126 final size:124
Alignment explanation
Indices: 50876577--50876864 Score: 486
Period size: 124 Copynumber: 2.3 Consensus size: 124
50876567 ATTTATTAAG
* * *
50876577 GAAATTGCTCCCACGTGGACGCGTTTTTGATACAGTAGATCCTGAAAAAATAATTTCAAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGATCCTGAAAAAATAATTTCAAGTTGAC
* *
50876642 GTTTCTGAGCAAATAGTATAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
66 GTTTCTGAACAAATAGTATAAAAACACTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
* *
50876701 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGATCCTGAAAAAATAATTTCAAGTTGAC
50876766 GTTTCTGAACAAATAGTATAAAAAAACACTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
66 GTTTCTGAACAAATAGTAT--AAAAACACTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
*
50876827 GAAATCGCTCCCACGTGGACGCGCTTTTGCTAGAGTAG
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
50876865 CATGTTTGGG
Statistics
Matches: 154, Mismatches: 8, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
124 78 0.51
126 76 0.49
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.29
Consensus pattern (124 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGATCCTGAAAAAATAATTTCAAGTTGAC
GTTTCTGAACAAATAGTATAAAAACACTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
Found at i:50877844 original size:14 final size:14
Alignment explanation
Indices: 50877825--50877854 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
50877815 GATGATGTGT
50877825 TGGATCATAAACCA
1 TGGATCATAAACCA
*
50877839 TGGATCCTAAACCA
1 TGGATCATAAACCA
50877853 TG
1 TG
50877855 ACATGTATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (14 bp):
TGGATCATAAACCA
Found at i:50881978 original size:102 final size:101
Alignment explanation
Indices: 50881648--50882001 Score: 454
Period size: 99 Copynumber: 3.5 Consensus size: 101
50881638 TTTGTTAGTA
* * * *
50881648 ATTTGTTTAGTTTAATGTTTATTATGATTTGTTATAAATATAAATTTTTATGTTGTTTTT-AATT
1 ATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGT-AATTTTTTTGTTGTTTTTAAATT
*
50881712 TATTTTAAAGTCATTTTGTTAGTAATTATTATAAATT
65 TATTTTAAAGTTATTTTGTTAGTAATTATTATAAATT
* * *
50881749 ATTTGTTTAGTTTAAAGTTTTTTGTGATTTGTTATGAATGTAATTTTTTT-TTGTTTTTTAAAGT
1 ATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAATTTTTTTGTTG-TTTTTAAATT
* ** * *
50881813 TATTTT---GTTA-GTAATTAATTATTAGGTTATAAATT
65 TATTTTAAAGTTATTTTGTTAGTAATTA--TTATAAATT
*
50881848 ATTTGTTTAGCTTAATGTTTATTGTGATTTGTTATGAATGTAATTTTTGTTGTT-TTTTTAAAAT
1 ATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAATTTTT-TTGTTGTTTTT-AAAT
50881912 TTATTTTAAAGTTATTTTGTTAGTAATTATTATAAATT
64 TTATTTTAAAGTTATTTTGTTAGTAATTATTATAAATT
* *
50881950 ATTTGTTTAGTTTAATGCTTATTGTGATTTGTTATGAATGT-ATTTATTTGTT
1 ATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAATTTTTTTGTT
50882002 TTTGATTTAT
Statistics
Matches: 217, Mismatches: 25, Indels: 23
0.82 0.09 0.09
Matches are distributed among these distances:
97 9 0.04
98 3 0.01
99 62 0.29
100 30 0.14
101 52 0.24
102 48 0.22
103 4 0.02
104 9 0.04
ACGTcount: A:0.27, C:0.01, G:0.13, T:0.59
Consensus pattern (101 bp):
ATTTGTTTAGTTTAATGTTTATTGTGATTTGTTATGAATGTAATTTTTTTGTTGTTTTTAAATTT
ATTTTAAAGTTATTTTGTTAGTAATTATTATAAATT
Found at i:50882264 original size:14 final size:14
Alignment explanation
Indices: 50882229--50882306 Score: 61
Period size: 14 Copynumber: 5.5 Consensus size: 14
50882219 TGAGATATTT
50882229 TTTATTGTAATTATA
1 TTTATTGT-ATTATA
50882244 TTATTATTGTATTATA
1 -T-TTATTGTATTATA
*
50882260 TTTATCGTA-T-TA
1 TTTATTGTATTATA
*
50882272 TTTATTGTATAATA
1 TTTATTGTATTATA
* * *
50882286 TTAATTTTTTTATA
1 TTTATTGTATTATA
*
50882300 ATTATTG
1 TTTATTG
50882307 AAAACGAATT
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
12 10 0.20
13 1 0.02
14 23 0.47
15 1 0.02
16 7 0.14
17 7 0.14
ACGTcount: A:0.31, C:0.01, G:0.06, T:0.62
Consensus pattern (14 bp):
TTTATTGTATTATA
Found at i:50882264 original size:17 final size:18
Alignment explanation
Indices: 50882223--50882264 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
50882213 AATTTATGAG
*
50882223 ATATTTTTTATTGTAATT
1 ATATTTATTATTGTAATT
50882241 ATA-TTATTATTGT-ATT
1 ATATTTATTATTGTAATT
50882257 ATATTTAT
1 ATATTTAT
50882265 CGTATTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 6 0.27
17 13 0.59
18 3 0.14
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (18 bp):
ATATTTATTATTGTAATT
Found at i:50886211 original size:8 final size:8
Alignment explanation
Indices: 50886198--50886228 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
50886188 GTCTCAAATA
50886198 AAAACATT
1 AAAACATT
50886206 AAAACATT
1 AAAACATT
50886214 AAAACATT
1 AAAACATT
50886222 AAAACAT
1 AAAACAT
50886229 ATATTGAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.65, C:0.13, G:0.00, T:0.23
Consensus pattern (8 bp):
AAAACATT
Found at i:50888149 original size:24 final size:24
Alignment explanation
Indices: 50888117--50888169 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
50888107 AAAAAAATTC
*
50888117 TTTTGCTACTCTTGAATCTTAAAA
1 TTTTACTACTCTTGAATCTTAAAA
*
50888141 TTTTACTACTTTTGAATCTTAAAA
1 TTTTACTACTCTTGAATCTTAAAA
50888165 TTTTA
1 TTTTA
50888170 TCTGCACAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.30, C:0.13, G:0.06, T:0.51
Consensus pattern (24 bp):
TTTTACTACTCTTGAATCTTAAAA
Found at i:50888803 original size:17 final size:16
Alignment explanation
Indices: 50888762--50888805 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
50888752 CAAAAAATCC
50888762 CAAAAATATTTTATTT
1 CAAAAATATTTTATTT
**
50888778 -AGCAATATTTGTATTT
1 CAAAAATATTT-TATTT
50888794 CAAAAATATTTT
1 CAAAAATATTTT
50888806 TTATCCCCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
15 8 0.36
16 6 0.27
17 8 0.36
ACGTcount: A:0.41, C:0.07, G:0.05, T:0.48
Consensus pattern (16 bp):
CAAAAATATTTTATTT
Found at i:50889042 original size:16 final size:16
Alignment explanation
Indices: 50889021--50889053 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
50889011 TTCGCTGTAT
50889021 TGGAATAGAGGCATAA
1 TGGAATAGAGGCATAA
*
50889037 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCATAA
50889053 T
1 T
50889054 AGCAATTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCATAA
Found at i:50889369 original size:95 final size:95
Alignment explanation
Indices: 50889263--50889438 Score: 334
Period size: 95 Copynumber: 1.9 Consensus size: 95
50889253 CATTTAATCC
* *
50889263 TATTTTCACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTCTTAAT
1 TATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTATTAAT
50889328 AATCAATATTCTTATAATTATTATTAAATA
66 AATCAATATTCTTATAATTATTATTAAATA
50889358 TATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTATTAAT
1 TATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTATTAAT
50889423 AATCAATATTCTTATA
66 AATCAATATTCTTATA
50889439 TGAATTTACT
Statistics
Matches: 79, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 79 1.00
ACGTcount: A:0.46, C:0.05, G:0.01, T:0.48
Consensus pattern (95 bp):
TATTTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTGATAAAATTATTAAT
AATCAATATTCTTATAATTATTATTAAATA
Found at i:50889371 original size:26 final size:26
Alignment explanation
Indices: 50889341--50889391 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
50889331 CAATATTCTT
50889341 ATAATTATTATTAAATATATTTTAAC
1 ATAATTATTATTAAATATATTTTAAC
50889367 ATAATTATTATTAAATATATTTTAA
1 ATAATTATTATTAAATATATTTTAA
50889392 TTAAAATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (26 bp):
ATAATTATTATTAAATATATTTTAAC
Found at i:50892386 original size:30 final size:30
Alignment explanation
Indices: 50892350--50892410 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
50892340 CAAATTGTAG
50892350 TAAAAGGGTCACATTTCTCCAATCATAATT
1 TAAAAGGGTCACATTTCTCCAATCATAATT
*
50892380 TAAAAGGGTCATATTTCTCCAATCATAATT
1 TAAAAGGGTCACATTTCTCCAATCATAATT
50892410 T
1 T
50892411 CAATAACAGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (30 bp):
TAAAAGGGTCACATTTCTCCAATCATAATT
Found at i:50892681 original size:16 final size:16
Alignment explanation
Indices: 50892656--50892686 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
50892646 TACCAAATAC
50892656 TTGTTGTTTAATCAAG
1 TTGTTGTTTAATCAAG
*
50892672 TTGTTTTTTAATCAA
1 TTGTTGTTTAATCAA
50892687 TCATAATAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.55
Consensus pattern (16 bp):
TTGTTGTTTAATCAAG
Found at i:50892770 original size:64 final size:64
Alignment explanation
Indices: 50892699--50892819 Score: 233
Period size: 64 Copynumber: 1.9 Consensus size: 64
50892689 ATAATAACAA
*
50892699 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTAATATAT
1 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTTTAATATAT
50892763 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTTT
1 TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTTT
50892820 TATTTTATTT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 56 1.00
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (64 bp):
TGAATATTTGTTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCAAATTTTAATATAT
Found at i:50894415 original size:33 final size:33
Alignment explanation
Indices: 50894373--50894439 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
50894363 TAAACCAAGA
50894373 AAGAAGTTGACCAATTACAACACACATATACTT
1 AAGAAGTTGACCAATTACAACACACATATACTT
50894406 AAGAAGTTGACCAATTACAACACACATATACTT
1 AAGAAGTTGACCAATTACAACACACATATACTT
50894439 A
1 A
50894440 CTCTTATTCG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.21, G:0.09, T:0.24
Consensus pattern (33 bp):
AAGAAGTTGACCAATTACAACACACATATACTT
Found at i:50904351 original size:40 final size:40
Alignment explanation
Indices: 50904294--50904376 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
50904284 ATTCCACAGC
* *
50904294 ACTTCATTTATTCAGTATACATCCTCTGGTGT-CTAGTCAA
1 ACTTCATTTATTCAGTATACAACCTCTGGT-TCCAAGTCAA
* *
50904334 ACTTTATTTATTCAGTATACAACTTCTGGTTCCAAGTCAA
1 ACTTCATTTATTCAGTATACAACCTCTGGTTCCAAGTCAA
50904374 ACT
1 ACT
50904377 CGTGCTGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
39 1 0.03
40 37 0.97
ACGTcount: A:0.28, C:0.22, G:0.11, T:0.40
Consensus pattern (40 bp):
ACTTCATTTATTCAGTATACAACCTCTGGTTCCAAGTCAA
Found at i:50911949 original size:65 final size:65
Alignment explanation
Indices: 50911834--50911963 Score: 206
Period size: 65 Copynumber: 2.0 Consensus size: 65
50911824 AAACATTATA
* * *
50911834 TCAAACATCTCCCATACAAAAATTCAGCGCTAGAAAAGTATCCCTGTGTACATAGAATTAAACAG
1 TCAAACATCTCCCATACAAAAATTCAGCGCTAGAAAAGCACCCCTATGTACATAGAATTAAACAG
* * *
50911899 TCAAACGTCTCCCATACTAAAATTCAGTGCTAGAAAAGCACCCCTATGTACATAGAATTAAACAG
1 TCAAACATCTCCCATACAAAAATTCAGCGCTAGAAAAGCACCCCTATGTACATAGAATTAAACAG
50911964 CTACCAACAG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
65 59 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.23
Consensus pattern (65 bp):
TCAAACATCTCCCATACAAAAATTCAGCGCTAGAAAAGCACCCCTATGTACATAGAATTAAACAG
Found at i:50918590 original size:6 final size:6
Alignment explanation
Indices: 50918575--50918604 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
50918565 TAATTATACA
50918575 TATATAT TATATT TATATT TATATT TATAT
1 TATAT-T TATATT TATATT TATATT TATAT
50918605 CACTAATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.78
7 5 0.22
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (6 bp):
TATATT
Found at i:50923342 original size:26 final size:24
Alignment explanation
Indices: 50923286--50923331 Score: 67
Period size: 23 Copynumber: 1.9 Consensus size: 24
50923276 TAAATGTTGT
50923286 ATTAATTATTTTTATTAAAATAAGA
1 ATTAA-TATTTTTATTAAAATAAGA
*
50923311 TTTAATA-TTTTATTAAAATAA
1 ATTAATATTTTTATTAAAATAA
50923332 TATGAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 14 0.70
24 2 0.10
25 4 0.20
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (24 bp):
ATTAATATTTTTATTAAAATAAGA
Found at i:50923345 original size:23 final size:23
Alignment explanation
Indices: 50923296--50923345 Score: 57
Period size: 23 Copynumber: 2.2 Consensus size: 23
50923286 ATTAATTATT
* *
50923296 TTTATTAAAATAAGATTTAATAT
1 TTTATTAAAATAAGATTGAATAA
*
50923319 TTTATTAAAATAATA-TGAATTAA
1 TTTATTAAAATAAGATTGAA-TAA
50923342 TTTA
1 TTTA
50923346 AAATATTTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 3 0.13
23 20 0.87
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (23 bp):
TTTATTAAAATAAGATTGAATAA
Found at i:50923480 original size:15 final size:16
Alignment explanation
Indices: 50923442--50923517 Score: 61
Period size: 16 Copynumber: 4.8 Consensus size: 16
50923432 TGAATAATAT
50923442 TAAATA-TATTTTTAAA
1 TAAATATTA-TTTTAAA
50923458 TAAATATTATTTTAAA
1 TAAATATTATTTTAAA
* * *
50923474 T-AATATTGTAATTAAT
1 TAAATATTAT-TTTAAA
*
50923490 TAAATTTTATTTT-AA
1 TAAATATTATTTTAAA
50923505 -AAATATTAATTTT
1 TAAATATT-ATTTT
50923518 TTTTCTTAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
14 6 0.12
15 13 0.27
16 21 0.44
17 8 0.17
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (16 bp):
TAAATATTATTTTAAA
Found at i:50925218 original size:22 final size:22
Alignment explanation
Indices: 50925190--50925241 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
50925180 TCGTTACACA
50925190 AATTTTTGAAGAAAACTTAGTT
1 AATTTTTGAAGAAAACTTAGTT
* ***
50925212 AATTTTT-TATTTAACTTAGTT
1 AATTTTTGAAGAAAACTTAGTT
50925233 AATTTTTGA
1 AATTTTTGA
50925242 TTTATTCGTT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
21 17 0.71
22 7 0.29
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (22 bp):
AATTTTTGAAGAAAACTTAGTT
Found at i:50925247 original size:25 final size:21
Alignment explanation
Indices: 50925203--50925245 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
50925193 TTTTGAAGAA
50925203 AACTTAGTTAATTTTTTATTT
1 AACTTAGTTAATTTTTTATTT
*
50925224 AACTTAGTTAATTTTTGATTT
1 AACTTAGTTAATTTTTTATTT
50925245 A
1 A
50925246 TTCGTTACAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.05, G:0.07, T:0.58
Consensus pattern (21 bp):
AACTTAGTTAATTTTTTATTT
Found at i:50926022 original size:45 final size:45
Alignment explanation
Indices: 50925870--50926022 Score: 137
Period size: 45 Copynumber: 3.4 Consensus size: 45
50925860 CTGCCAATGA
* * * * * * *
50925870 CTGTGGATAGAAAACAAA-ATCCCGCAGATAGAATTTGCGTCTGG
1 CTGTGGATACACAACAAATATCTCGCAAATAGAATCTGCCTCTAG
* * * * * *
50925914 CTGTAGATGCACAAAAAAAATCTCGCAAATAAAATCTGTCTCTAG
1 CTGTGGATACACAACAAATATCTCGCAAATAGAATCTGCCTCTAG
* * * * *
50925959 CTGTGAAAACATAGCAAATATCTTGCAAATAGAATCTGCCTCTAG
1 CTGTGGATACACAACAAATATCTCGCAAATAGAATCTGCCTCTAG
50926004 CTGTGGATACACAACAAAT
1 CTGTGGATACACAACAAAT
50926023 TTGTAGATAA
Statistics
Matches: 81, Mismatches: 27, Indels: 1
0.74 0.25 0.01
Matches are distributed among these distances:
44 13 0.16
45 68 0.84
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.24
Consensus pattern (45 bp):
CTGTGGATACACAACAAATATCTCGCAAATAGAATCTGCCTCTAG
Found at i:50926124 original size:34 final size:33
Alignment explanation
Indices: 50926086--50926195 Score: 121
Period size: 34 Copynumber: 3.2 Consensus size: 33
50926076 GCAATGTGAC
*
50926086 ATGCTTATAGCAGATCAATTCGGTAGCAATTAAT
1 ATGCTTATAACAGATCAATT-GGTAGCAATTAAT
* * * *
50926120 ATGCTTATAACAAATCAATAAGATAACAATTAAT
1 ATGCTTATAACAGATCAAT-TGGTAGCAATTAAT
* * *
50926154 ATGTTTATAACAGTTCAATATGGTTGCAATTAAT
1 ATGCTTATAACAGATCAAT-TGGTAGCAATTAAT
50926188 ATGCTTAT
1 ATGCTTAT
50926196 CATAAATCAA
Statistics
Matches: 62, Mismatches: 13, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
34 62 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (33 bp):
ATGCTTATAACAGATCAATTGGTAGCAATTAAT
Found at i:50926226 original size:68 final size:69
Alignment explanation
Indices: 50926077--50926227 Score: 157
Period size: 68 Copynumber: 2.2 Consensus size: 69
50926067 CTATGCAATG
* * *
50926077 CAATGTGACATGCTTATAGCAGATCAATTCGGTAGCAATTAATATGCTTATAACAAATCAATAAG
1 CAATGAGACATGTTTATAACAGATCAATTCGGTAGCAATTAATATGCTTATAACAAATCAATAAG
50926142 ATAA
66 ATAA
* * * * * * *
50926146 CAATTA-ATATGTTTATAACAGTTCAATAT-GGTTGCAATTAATATGCTTATCATAAATCAATTC
1 CAATGAGACATGTTTATAACAGATCAAT-TCGGTAGCAATTAATATGCTTATAACAAATCAA-TA
*
50926209 AG-TAG
64 AGATAA
50926214 CAA-GAGACATGTTT
1 CAATGAGACATGTTT
50926228 TATCATGCGT
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
67 1 0.02
68 57 0.86
69 8 0.12
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.33
Consensus pattern (69 bp):
CAATGAGACATGTTTATAACAGATCAATTCGGTAGCAATTAATATGCTTATAACAAATCAATAAG
ATAA
Found at i:50929718 original size:24 final size:22
Alignment explanation
Indices: 50929690--50929734 Score: 63
Period size: 24 Copynumber: 2.0 Consensus size: 22
50929680 AGATTATTCC
50929690 GCCCTTAAAATATTTTCACTATTG
1 GCCCTTAAAAT-TTTTCA-TATTG
*
50929714 GCCCTTCAAATTTTTCATATT
1 GCCCTTAAAATTTTTCATATT
50929735 TACACTTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 4 0.20
23 6 0.30
24 10 0.50
ACGTcount: A:0.27, C:0.22, G:0.07, T:0.44
Consensus pattern (22 bp):
GCCCTTAAAATTTTTCATATTG
Found at i:50931493 original size:29 final size:30
Alignment explanation
Indices: 50931446--50931518 Score: 94
Period size: 29 Copynumber: 2.5 Consensus size: 30
50931436 GCTTTGTGTG
*
50931446 AGCTCTCTATTTAGCTTTGCC-TAATTGCA
1 AGCTTTCTATTTAGCTTTGCCTTAATTGCA
* * **
50931475 AGTTTTCTATTTATCTTTGCCTTTTTTGCA
1 AGCTTTCTATTTAGCTTTGCCTTAATTGCA
50931505 AGCTTTCTATTTAG
1 AGCTTTCTATTTAG
50931519 TGAGCTCTTT
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
29 18 0.50
30 18 0.50
ACGTcount: A:0.18, C:0.19, G:0.12, T:0.51
Consensus pattern (30 bp):
AGCTTTCTATTTAGCTTTGCCTTAATTGCA
Found at i:50931657 original size:41 final size:42
Alignment explanation
Indices: 50931585--50931663 Score: 133
Period size: 41 Copynumber: 1.9 Consensus size: 42
50931575 GTTAAGTCTT
*
50931585 ACTCTGTGTGTTCCTTTGAGAGCATGAGCTTTTGTGAGCCTC
1 ACTCTGTGTGCTCCTTTGAGAGCATGAGCTTTTGTGAGCCTC
*
50931627 ACTCTGTGTGCTCC-TTGAGAGCATGGGCTTTTGTGAG
1 ACTCTGTGTGCTCCTTTGAGAGCATGAGCTTTTGTGAG
50931664 ACTTGTGATG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 22 0.63
42 13 0.37
ACGTcount: A:0.14, C:0.20, G:0.29, T:0.37
Consensus pattern (42 bp):
ACTCTGTGTGCTCCTTTGAGAGCATGAGCTTTTGTGAGCCTC
Found at i:50936876 original size:111 final size:111
Alignment explanation
Indices: 50936677--50936889 Score: 293
Period size: 111 Copynumber: 1.9 Consensus size: 111
50936667 TATTTCTCTA
* * * *
50936677 TATTCGGTAAGGTAAGATTTTAGAAAATTTCAGTATTAATTATTTTACCATATATATTTAGTGTT
1 TATTCGGTAAGGTAAGATTTTAAAAAATATAAGTATTAATTATTTCACCATATATATTTAGTGTT
** *
50936742 TATTTGGAAATATTTTTTAAAGATTTTTATAGTTATTATTTTCGTT
66 TATTTGGAAATATTTAATAAAGATATTTATAGTTATTATTTTCGTT
* * * *
50936788 TATTTGGTAAGGTGAGGTTTTAAAAAATATAAGTATTAATTATTTCACTATATATATTTGAGTGT
1 TATTCGGTAAGGTAAGATTTTAAAAAATATAAGTATTAATTATTTCACCATATATATTT-AGTGT
* *
50936853 TTATTTGGAAA-ATTTAATCAAGATATTTATTGTTATT
65 TTATTTGGAAATATTTAATAAAGATATTTATAGTTATT
50936890 TGTTTCTTAT
Statistics
Matches: 88, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
111 72 0.82
112 16 0.18
ACGTcount: A:0.33, C:0.04, G:0.14, T:0.49
Consensus pattern (111 bp):
TATTCGGTAAGGTAAGATTTTAAAAAATATAAGTATTAATTATTTCACCATATATATTTAGTGTT
TATTTGGAAATATTTAATAAAGATATTTATAGTTATTATTTTCGTT
Found at i:50942753 original size:31 final size:32
Alignment explanation
Indices: 50942714--50942807 Score: 95
Period size: 31 Copynumber: 3.0 Consensus size: 32
50942704 AATTAGTCAC
50942714 TAAGCCAAATAAAAACTAATTACATTTTCATT
1 TAAGCCAAATAAAAACTAATTACATTTTCATT
** * * * * *
50942746 TAA-CCAAAT-AAAGTTAGTCAAATTAGTCA-C
1 TAAGCCAAATAAAAACTAATTACATT-TTCATT
50942776 TAAGCCAAATAAAAACTAATTACATTTTCATT
1 TAAGCCAAATAAAAACTAATTACATTTTCATT
50942808 ACCATGGTGA
Statistics
Matches: 44, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
30 13 0.30
31 18 0.41
32 13 0.30
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.32
Consensus pattern (32 bp):
TAAGCCAAATAAAAACTAATTACATTTTCATT
Found at i:50942788 original size:62 final size:62
Alignment explanation
Indices: 50942691--50942807 Score: 234
Period size: 62 Copynumber: 1.9 Consensus size: 62
50942681 GATTTATTTT
50942691 ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATTTAACCAA
1 ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATTTAACCAA
50942753 ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATT
1 ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATT
50942808 ACCATGGTGA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.46, C:0.15, G:0.07, T:0.32
Consensus pattern (62 bp):
ATAAAGTTAGTCAAATTAGTCACTAAGCCAAATAAAAACTAATTACATTTTCATTTAACCAA
Found at i:50943326 original size:2 final size:2
Alignment explanation
Indices: 50943319--50943343 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
50943309 CCGCCATGAG
50943319 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
50943344 AGAGATCAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:50959467 original size:10 final size:9
Alignment explanation
Indices: 50959443--50959484 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
50959433 AATTTGATTT
*
50959443 TTTTAAAGA
1 TTTTAAAAA
50959452 TTTTAAAAA
1 TTTTAAAAA
50959461 TTATTAAAAA
1 TT-TTAAAAA
50959471 -TTTAAAAA
1 TTTTAAAAA
50959479 GTTTTA
1 -TTTTA
50959485 CTATAAACCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
8 7 0.24
9 11 0.38
10 11 0.38
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:50962459 original size:37 final size:36
Alignment explanation
Indices: 50962416--50962511 Score: 111
Period size: 37 Copynumber: 2.6 Consensus size: 36
50962406 ATGCATGATT
*
50962416 AAGCATGCTATTAAGATTGTTAAACCGAAAGCATGAG
1 AAGCATGCCATTAA-ATTGTTAAACCGAAAGCATGAG
* * *
50962453 AAGCATGCCACTATAATTGTTAAGCCGAAAGCATGAT
1 AAGCATGCCATTA-AATTGTTAAACCGAAAGCATGAG
* *
50962490 AAACATGCCATTGATATTGTTA
1 AAGCATGCCATT-AAATTGTTA
50962512 CTATTATCGA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
37 48 0.96
38 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.27
Consensus pattern (36 bp):
AAGCATGCCATTAAATTGTTAAACCGAAAGCATGAG
Found at i:50968702 original size:7 final size:7
Alignment explanation
Indices: 50968676--50968759 Score: 86
Period size: 7 Copynumber: 12.3 Consensus size: 7
50968666 TGAAAGCTAA
*
50968676 GAGAGTT
1 GAGAGAT
50968683 GAGAGA-
1 GAGAGAT
50968689 GAG-GAT
1 GAGAGAT
50968695 GAGAGAT
1 GAGAGAT
50968702 GAGAGAT
1 GAGAGAT
50968709 GAGAGAT
1 GAGAGAT
50968716 GAGAGAT
1 GAGAGAT
50968723 GAGAGGGAT
1 GAGA--GAT
*
50968732 GAGGGAT
1 GAGAGAT
*
50968739 GAGGGAT
1 GAGAGAT
50968746 GA-AG-T
1 GAGAGAT
*
50968751 GAGAAAT
1 GAGAGAT
50968758 GA
1 GA
50968760 CCTCTTATTT
Statistics
Matches: 67, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
5 5 0.07
6 8 0.12
7 48 0.72
9 6 0.09
ACGTcount: A:0.39, C:0.00, G:0.46, T:0.14
Consensus pattern (7 bp):
GAGAGAT
Found at i:50968722 original size:21 final size:21
Alignment explanation
Indices: 50968676--50968759 Score: 86
Period size: 19 Copynumber: 4.1 Consensus size: 21
50968666 TGAAAGCTAA
*
50968676 GAGAGTTGAGAGA-GAG-GAT
1 GAGAGATGAGAGATGAGAGAT
50968695 GAGAGATGAGAGATGAGAGAT
1 GAGAGATGAGAGATGAGAGAT
*
50968716 GAGAGATGAGAGGGATGAGGGAT
1 GAGAGATGAGA--GATGAGAGAT
* *
50968739 GAGGGATGA-AG-TGAGAAAT
1 GAGAGATGAGAGATGAGAGAT
50968758 GA
1 GA
50968760 CCTCTTATTT
Statistics
Matches: 56, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
19 20 0.36
20 4 0.07
21 14 0.25
22 1 0.02
23 17 0.30
ACGTcount: A:0.39, C:0.00, G:0.46, T:0.14
Consensus pattern (21 bp):
GAGAGATGAGAGATGAGAGAT
Found at i:50972830 original size:14 final size:14
Alignment explanation
Indices: 50972811--50972837 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50972801 ATAAAATTTA
50972811 AAATTAAACTAAAT
1 AAATTAAACTAAAT
50972825 AAATTAAACTAAA
1 AAATTAAACTAAA
50972838 AAAAATATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (14 bp):
AAATTAAACTAAAT
Found at i:50980717 original size:35 final size:33
Alignment explanation
Indices: 50980661--50980726 Score: 105
Period size: 35 Copynumber: 1.9 Consensus size: 33
50980651 AAATATGTTC
50980661 AGTGTTTTAATCATTTTCTAAGTCTTGTTCTTA
1 AGTGTTTTAATCATTTTCTAAGTCTTGTTCTTA
*
50980694 AGTGTTTTTGATCATATTTCTAAGTCTTGTTCT
1 AGTG-TTTTAATCAT-TTTCTAAGTCTTGTTCT
50980727 GAAGAAATAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
33 4 0.13
34 9 0.30
35 17 0.57
ACGTcount: A:0.20, C:0.12, G:0.14, T:0.55
Consensus pattern (33 bp):
AGTGTTTTAATCATTTTCTAAGTCTTGTTCTTA
Found at i:50982314 original size:41 final size:40
Alignment explanation
Indices: 50982180--50982314 Score: 173
Period size: 39 Copynumber: 3.4 Consensus size: 40
50982170 TAAAATGATA
* *
50982180 TTTTGCGGCATTTTTCTCATAGTGCCGTTAATGCTTGACC
1 TTTTGCGGCATTTTTCTCATAGTGTCGCTAATGCTTGACC
*
50982220 TTTT-CTGCATTTTTCTCATAGTGTCGCTAATGCTTGACC
1 TTTTGCGGCATTTTTCTCATAGTGTCGCTAATGCTTGACC
* * ** *
50982259 TTTTGTGGTATTTTTCTCATAAACGTCGCTACTGCTTGACC
1 TTTTGCGGCATTTTTCTCAT-AGTGTCGCTAATGCTTGACC
*
50982300 TTTTGCGGCGTTTTT
1 TTTTGCGGCATTTTT
50982315 TTGTTAGCGC
Statistics
Matches: 81, Mismatches: 12, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
39 36 0.44
40 16 0.20
41 29 0.36
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (40 bp):
TTTTGCGGCATTTTTCTCATAGTGTCGCTAATGCTTGACC
Found at i:50988094 original size:23 final size:22
Alignment explanation
Indices: 50988051--50988108 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
50988041 AAAGGGTATC
* *
50988051 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
50988072 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
50988095 TGCATATCATATCT
1 TACAAATCATATCT
50988109 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:50988789 original size:131 final size:131
Alignment explanation
Indices: 50988585--50988907 Score: 479
Period size: 131 Copynumber: 2.5 Consensus size: 131
50988575 GAGATAAGGT
**
50988585 TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGACTCATCGTCTTTGATCTGCTCC
1 TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGA-TCGCCGTCTTTGATCTGCTCC
* *
50988650 ACTTCTGCTTAGGGAGACAAGATATACAATCTTTAACCTACTCCACTACTGCTC-AGAGAGATAG
65 ACTACTGCTTAGGGAGACAAGATATACAATCTTCAACCTACTCCACTACTGCTCAAG-GAGATAG
50988714 GAC
129 GAC
* * * * *
50988717 TGGTGGCTTAAATATGCTT-CCTACTATCTCAGGAATATAAGATTCGCCGTCTTCGATCTGCTCC
1 TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGA-TCGCCGTCTTTGATCTGCTCC
* *
50988781 ACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGG
65 ACTACTGCTTAGGGAGACAAGATATACAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGG
50988846 AC
130 AC
* *
50988848 TGGTGGCTTAAATCTGTTTCCCTACTACCTTGGGAAGATAAGATCTGCCGTCTTTGATCT
1 TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATC-GCCGTCTTTGATCT
50988908 ATTCCATTGC
Statistics
Matches: 169, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
131 117 0.69
132 52 0.31
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (131 bp):
TGGTGGCTTAAATCTGCTTCCCTACTACCTCGGGAAGATAAGATCGCCGTCTTTGATCTGCTCCA
CTACTGCTTAGGGAGACAAGATATACAATCTTCAACCTACTCCACTACTGCTCAAGGAGATAGGA
C
Found at i:50989430 original size:44 final size:44
Alignment explanation
Indices: 50989364--50989668 Score: 280
Period size: 44 Copynumber: 6.9 Consensus size: 44
50989354 AGACTTGAAA
* *
50989364 CTTTAATCTGCTCCACTACAACTTCAGGGAGATAGGATTATTGG
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTGG
* * * * *
50989408 CTTTAATCAACTTCACTGCAACTTTAGGGAGATAAGA-T-TTGCCAT
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTG---G
* * * *
50989453 CTTTATTCTGCCCCACTGCAACTTCAGAGG-GATAAGACTTACTT--
1 CTTTAATCTACTCCACTACAACTTCAG-GGAGATAAGA-TTA-TTGG
* * * * **
50989497 TTTTCAGTCTGCTCCACTACAACTTCAAGGAGATAAGATT-TGTAA
1 CTTT-AATCTACTCCACTACAACTTCAGGGAGATAAGATTAT-TGG
* * * *
50989542 CTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTATTGG
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTGG
* *
50989586 CTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATTGG
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTGG
*
50989630 CTTTAATCTACTCCACTACAACTTTAGGGAGATAAGATT
1 CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATT
50989669 CGCCATCTTA
Statistics
Matches: 214, Mismatches: 33, Indels: 28
0.78 0.12 0.10
Matches are distributed among these distances:
42 4 0.02
43 2 0.01
44 145 0.68
45 58 0.27
46 2 0.01
47 1 0.00
49 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (44 bp):
CTTTAATCTACTCCACTACAACTTCAGGGAGATAAGATTATTGG
Found at i:50989472 original size:45 final size:44
Alignment explanation
Indices: 50989364--50989704 Score: 201
Period size: 44 Copynumber: 7.6 Consensus size: 44
50989354 AGACTTGAAA
* * *
50989364 CTTTAATCTGCTCCACTACAACTTCAGGGAGATAGGATTATTG--G
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-TTGCAT
** * *
50989408 CTTTAATCAACTTCACTGCAACTTTAGGGAGATAAGATTTGCCAT
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CAT
* * * * *
50989453 CTTTATTCTGCCCCACTGCAACTTCAGAGG-GATAAGACTTACTT
1 CTTTAATCTGCTCCACTGCAACTTCAG-GGAGATAAGATTTGCAT
* * * * * *
50989497 TTTTCAGTCTGCTCCACTACAACTTCAAGGAGATAAGATTTGTAA
1 CTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAT
** * * *
50989542 CTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTATTG--G
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-TTGCAT
** * * *
50989586 CTTTAATCCACTCCACTACAACTTCAGGGAGATAGGATTATTG--G
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA-T-TTGCAT
* * * *
50989630 CTTTAATCTACTCCACTACAACTTTAGGGAGATAAGATTCGCCAT
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG-CAT
***
50989675 CTTATTCAATCCATTCCACTGCAACTTCAG
1 C-T-TT-AATCTGCTCCACTGCAACTTCAG
50989705 TGGTATAGGA
Statistics
Matches: 237, Mismatches: 46, Indels: 24
0.77 0.15 0.08
Matches are distributed among these distances:
42 5 0.02
43 2 0.01
44 140 0.59
45 63 0.27
46 6 0.03
47 2 0.01
48 19 0.08
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (44 bp):
CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCAT
Found at i:50989475 original size:152 final size:152
Alignment explanation
Indices: 50989216--50989502 Score: 416
Period size: 152 Copynumber: 1.9 Consensus size: 152
50989206 TGGCCTCTTC
* * **
50989216 AATCCGCTCCATTATAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTACAACTTC
1 AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCAACTCCACTACAACTTC
* *
50989281 AGAGGGATAAGATTTGCCATCTTCAGTCTACCCCACTTCAACTTCA-AGGGGATAAGACTTGCTT
66 AGAGGGATAAGATTTGCCATCTTCAGTCTACCCCACTGCAACTTCAGA-GGGATAAGACTTACTT
50989345 TCTTCAATAAGACTTGAAACTTT
130 TCTTCAATAAGACTTGAAACTTT
* * * *
50989368 AATCTGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCAACTTCACTGCAACTTT
1 AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCAACTCCACTACAACTTC
* * *
50989433 AG-GGAGATAAGATTTGCCATCTTTATTCTGCCCCACTGCAACTTCAGAGGGATAAGACTTACTT
66 AGAGG-GATAAGATTTGCCATCTTCAGTCTACCCCACTGCAACTTCAGAGGGATAAGACTTACTT
*
50989497 TTTTCA
130 TCTTCA
50989503 GTCTGCTCCA
Statistics
Matches: 119, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
151 2 0.02
152 116 0.97
153 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.32
Consensus pattern (152 bp):
AATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGGCTTTAATCAACTCCACTACAACTTC
AGAGGGATAAGATTTGCCATCTTCAGTCTACCCCACTGCAACTTCAGAGGGATAAGACTTACTTT
CTTCAATAAGACTTGAAACTTT
Found at i:50994319 original size:19 final size:19
Alignment explanation
Indices: 50994295--50994338 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
50994285 GTGGAAATCC
* *
50994295 AATGCATATG-ATGCAATG
1 AATGCAGATGCATGAAATG
50994313 TAATGCAGATGCATGAAATG
1 -AATGCAGATGCATGAAATG
50994333 AATGCA
1 AATGCA
50994339 AAAAGAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (19 bp):
AATGCAGATGCATGAAATG
Found at i:50996976 original size:23 final size:22
Alignment explanation
Indices: 50996933--50996990 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
50996923 AAAGGGTATC
* *
50996933 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
50996954 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
50996977 TGCATATCATATCT
1 TACAAATCATATCT
50996991 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:51000740 original size:22 final size:22
Alignment explanation
Indices: 51000715--51000771 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
51000705 AAGCGTGTTA
*
51000715 GGCACTAAGCCTGAATAACATC
1 GGCACTAAGCCTGAATAACACC
51000737 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTGAATAACACC
* *
51000759 AGTACTAAGCCTG
1 GGCACTAAGCCTG
51000772 CTAGGCACTA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.35, C:0.28, G:0.19, T:0.18
Consensus pattern (22 bp):
GGCACTAAGCCTGAATAACACC
Found at i:51000789 original size:38 final size:38
Alignment explanation
Indices: 51000737--51000833 Score: 133
Period size: 38 Copynumber: 2.6 Consensus size: 38
51000727 GAATAACATC
* *
51000737 GGCACTAAGCCTGAATAACACC-AGTACTAAGCCTGCTA
1 GGCACTAAGCCTGAATAACACCGA-CACTAAGCATGCTA
* *
51000775 GGCACTAAGACTGAACAACACCGACACTAAGCATGCTA
1 GGCACTAAGCCTGAATAACACCGACACTAAGCATGCTA
*
51000813 AGCACTAAGCCTGAATAACAC
1 GGCACTAAGCCTGAATAACAC
51000834 TGTATAAATT
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 50 0.98
39 1 0.02
ACGTcount: A:0.38, C:0.29, G:0.18, T:0.15
Consensus pattern (38 bp):
GGCACTAAGCCTGAATAACACCGACACTAAGCATGCTA
Found at i:51003339 original size:49 final size:49
Alignment explanation
Indices: 51003233--51003325 Score: 161
Period size: 49 Copynumber: 1.9 Consensus size: 49
51003223 CATGCTATGT
*
51003233 AATGC-TAAACTTAGTCTTCCACTATCTACACTCTTATCACTATTATAC
1 AATGCTTAAACTTAGTCTTCCACTATCTACACTCTTATCAATATTATAC
*
51003281 AATGCTTAAACTTGGTCTTCCACTATCTACACTCTTATCAATATT
1 AATGCTTAAACTTAGTCTTCCACTATCTACACTCTTATCAATATT
51003326 TATTCCCTCT
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
48 5 0.12
49 37 0.88
ACGTcount: A:0.30, C:0.26, G:0.05, T:0.39
Consensus pattern (49 bp):
AATGCTTAAACTTAGTCTTCCACTATCTACACTCTTATCAATATTATAC
Found at i:51006804 original size:23 final size:22
Alignment explanation
Indices: 51006767--51006821 Score: 58
Period size: 21 Copynumber: 2.4 Consensus size: 22
51006757 TGTATAAACC
51006767 ATAAAAAATTGTCATGAAATAAAAT
1 ATAAAAAA-TGTCAT-AAA-AAAAT
*
51006792 ATAAAAAAT-TCATAAAAATAT
1 ATAAAAAATGTCATAAAAAAAT
*
51006813 ATATAAAAT
1 ATAAAAAAT
51006822 CTAAAAATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 12 0.43
22 3 0.11
23 4 0.14
24 1 0.04
25 8 0.29
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.29
Consensus pattern (22 bp):
ATAAAAAATGTCATAAAAAAAT
Found at i:51006833 original size:20 final size:21
Alignment explanation
Indices: 51006787--51006851 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 21
51006777 GTCATGAAAT
51006787 AAAATATA-A-AAAATTCATA
1 AAAATATATATAAAATTCATA
51006806 AAAATATATATAAAA-TC-TA
1 AAAATATATATAAAATTCATA
*
51006825 AAAATTATATATGGAAATT-ATA
1 AAAA-TATATAT-AAAATTCATA
51006847 AAAAT
1 AAAAT
51006852 GAAATGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
19 14 0.36
20 10 0.26
21 8 0.21
22 7 0.18
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.31
Consensus pattern (21 bp):
AAAATATATATAAAATTCATA
Found at i:51006848 original size:22 final size:20
Alignment explanation
Indices: 51006797--51006851 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
51006787 AAAATATAAA
51006797 AAATTCATAAAAA-TATATAT
1 AAATT-ATAAAAATTATATAT
* *
51006817 AAAATCTAAAAATTATATAT
1 AAATTATAAAAATTATATAT
51006837 GGAAATTATAAAAAT
1 --AAATTATAAAAAT
51006852 GAAATGAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 6 0.21
20 11 0.39
22 11 0.39
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (20 bp):
AAATTATAAAAATTATATAT
Found at i:51007925 original size:31 final size:31
Alignment explanation
Indices: 51007890--51007987 Score: 87
Period size: 29 Copynumber: 3.3 Consensus size: 31
51007880 AAATGTTTAC
51007890 TAGTGATTAGTTTGTTATTTTTATAAAAGTT
1 TAGTGATTAGTTTGTTATTTTTATAAAAGTT
** *
51007921 TAGTGATTGAG-TTG-TAACTTT-TCAAAGTT
1 TAGTGATT-AGTTTGTTATTTTTATAAAAGTT
* ** * *
51007950 TAGT-TTTTTTTTGTTATTTTAACAAAAGTT
1 TAGTGATTAGTTTGTTATTTTTATAAAAGTT
51007980 TAGTGATT
1 TAGTGATT
51007988 TTTAGTGTAC
Statistics
Matches: 50, Mismatches: 12, Indels: 10
0.69 0.17 0.14
Matches are distributed among these distances:
28 5 0.10
29 15 0.30
30 15 0.30
31 13 0.26
32 2 0.04
ACGTcount: A:0.28, C:0.03, G:0.16, T:0.53
Consensus pattern (31 bp):
TAGTGATTAGTTTGTTATTTTTATAAAAGTT
Found at i:51009073 original size:34 final size:33
Alignment explanation
Indices: 51008976--51009079 Score: 117
Period size: 34 Copynumber: 3.1 Consensus size: 33
51008966 AGAAATTGTA
51008976 TTATACTTTTTTTTTGTCTTTGTAATAAATTAATG
1 TTATAC-TTTTTTTTGTC-TTGTAATAAATTAATG
*
51009011 TTA-A-TTTTGTTAAT-TCTAT-TAATAAATTAATG
1 TTATACTTTT-TT-TTGTCT-TGTAATAAATTAATG
51009043 TTATACTTTTTTTTGTCATTGTAATAAATTAATG
1 TTATACTTTTTTTTGTC-TTGTAATAAATTAATG
51009077 TTA
1 TTA
51009080 ATTCTATTAA
Statistics
Matches: 59, Mismatches: 2, Indels: 17
0.76 0.03 0.22
Matches are distributed among these distances:
32 22 0.37
33 11 0.19
34 23 0.39
35 3 0.05
ACGTcount: A:0.31, C:0.05, G:0.08, T:0.57
Consensus pattern (33 bp):
TTATACTTTTTTTTGTCTTGTAATAAATTAATG
Found at i:51009095 original size:12 final size:12
Alignment explanation
Indices: 51009078--51009102 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51009068 AAATTAATGT
51009078 TAATTCTATTAA
1 TAATTCTATTAA
51009090 TAATTCTATTAA
1 TAATTCTATTAA
51009102 T
1 T
51009103 TATTATTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.08, G:0.00, T:0.52
Consensus pattern (12 bp):
TAATTCTATTAA
Found at i:51010200 original size:12 final size:12
Alignment explanation
Indices: 51010165--51010203 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
51010155 CTTATTTGGA
51010165 TTTATTTTAT-T
1 TTTATTTTATAT
*
51010176 TTTATTTT-CAT
1 TTTATTTTATAT
51010187 TTTATTTTATAT
1 TTTATTTTATAT
51010199 TTTAT
1 TTTAT
51010204 ATTAACAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 17 0.71
12 7 0.29
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (12 bp):
TTTATTTTATAT
Found at i:51012038 original size:50 final size:50
Alignment explanation
Indices: 51011973--51012161 Score: 197
Period size: 51 Copynumber: 3.8 Consensus size: 50
51011963 AAAGTGAAAG
*
51011973 TGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
* * *
51012022 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A
** * * * *
51012073 GTTTCTA--TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCATCGG-A
1 --TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
* *
51012122 TGGTAATGGTCACATGTGTAGTACTATGTTCAGGCTACTA
1 TGAT-A-GGTCACATGTGTAGTACTATGTGCAGGCTACTA
51012162 TGTGAATCGA
Statistics
Matches: 114, Mismatches: 18, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
47 2 0.02
48 1 0.01
49 5 0.04
50 40 0.35
51 63 0.55
53 3 0.03
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (50 bp):
TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAA
Found at i:51012099 original size:101 final size:102
Alignment explanation
Indices: 51011979--51012163 Score: 293
Period size: 101 Copynumber: 1.8 Consensus size: 102
51011969 AAAGTGATGG
* * *
51011979 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCACCGG-ATGATAATGGTCACATGTGTAGT
51012042 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCTA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCTA
* *
51012080 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCACCGGATGATAATGGTCACATGTGTAGTA
*
51012145 CTATGTTCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
51012164 TGAATCGAAC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 33 0.43
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGCACCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGTTTCTA
Found at i:51015725 original size:26 final size:26
Alignment explanation
Indices: 51015695--51015761 Score: 93
Period size: 26 Copynumber: 2.6 Consensus size: 26
51015685 ACAACTCTTA
*
51015695 TGAGCGTCCCGA-TAAATGGCTCTTTG
1 TGAGCTTCCCGATTAAA-GGCTCTTTG
*
51015721 TGAGCTTCCTGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTTTG
51015747 TGAGCTTCCC-ATTAA
1 TGAGCTTCCCGATTAA
51015762 TTTCTCTCTG
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
25 5 0.14
26 28 0.76
27 4 0.11
ACGTcount: A:0.21, C:0.22, G:0.22, T:0.34
Consensus pattern (26 bp):
TGAGCTTCCCGATTAAAGGCTCTTTG
Found at i:51015862 original size:24 final size:25
Alignment explanation
Indices: 51015809--51015864 Score: 69
Period size: 25 Copynumber: 2.3 Consensus size: 25
51015799 TTCCTAATAT
* * *
51015809 ATGGCTATCCGGAGCTTCCCGATTA
1 ATGGCTCTTCGGAGCTACCCGATTA
51015834 ATGGCTCTTCGGAGCTACCC-ATTA
1 ATGGCTCTTCGGAGCTACCCGATTA
*
51015858 TTGGCTC
1 ATGGCTC
51015865 GCATGAGCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
24 10 0.37
25 17 0.63
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.30
Consensus pattern (25 bp):
ATGGCTCTTCGGAGCTACCCGATTA
Found at i:51015921 original size:24 final size:25
Alignment explanation
Indices: 51015891--51015973 Score: 78
Period size: 25 Copynumber: 3.4 Consensus size: 25
51015881 TAAGGCTCTT
*
51015891 ATGAGCTTCCTGTTATATATCTCGA
1 ATGAGCTTCCTGTTATATAGCTCGA
* * * *
51015916 AT-AGCTTCCCGTTACATGGCTCGC
1 ATGAGCTTCCTGTTATATAGCTCGA
* * *
51015940 ATGAGCTTCATGTTATATGGTTCGA
1 ATGAGCTTCCTGTTATATAGCTCGA
*
51015965 AAGAGCTTC
1 ATGAGCTTC
51015974 ACATTAAGTG
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
24 19 0.41
25 27 0.59
ACGTcount: A:0.23, C:0.22, G:0.20, T:0.35
Consensus pattern (25 bp):
ATGAGCTTCCTGTTATATAGCTCGA
Found at i:51015954 original size:25 final size:25
Alignment explanation
Indices: 51015855--51015973 Score: 93
Period size: 24 Copynumber: 4.9 Consensus size: 25
51015845 GAGCTACCCA
* *
51015855 TTAT-TGGCTCGCATGAGCTTCCTAA
1 TTATATGGCTCGAATGAGCTTCCT-G
**
51015880 TTA-A-GGCTCTTATGAGCTTCCTG
1 TTATATGGCTCGAATGAGCTTCCTG
** *
51015903 TTATATATCTCGAAT-AGCTTCCCG
1 TTATATGGCTCGAATGAGCTTCCTG
* * *
51015927 TTACATGGCTCGCATGAGCTTCATG
1 TTATATGGCTCGAATGAGCTTCCTG
* *
51015952 TTATATGGTTCGAAAGAGCTTC
1 TTATATGGCTCGAATGAGCTTC
51015974 ACATTAAGTG
Statistics
Matches: 72, Mismatches: 18, Indels: 8
0.73 0.18 0.08
Matches are distributed among these distances:
23 3 0.04
24 36 0.50
25 33 0.46
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.36
Consensus pattern (25 bp):
TTATATGGCTCGAATGAGCTTCCTG
Found at i:51023573 original size:24 final size:25
Alignment explanation
Indices: 51023546--51023592 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
51023536 TAGGACTTTA
51023546 ACTTTGAATTTGACTAGT-TTTAGG
1 ACTTTGAATTTGACTAGTGTTTAGG
*
51023570 ACTTTGACTTTGACTAGTGTTTA
1 ACTTTGAATTTGACTAGTGTTTA
51023593 TAAAATAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.23, C:0.11, G:0.19, T:0.47
Consensus pattern (25 bp):
ACTTTGAATTTGACTAGTGTTTAGG
Found at i:51024961 original size:26 final size:26
Alignment explanation
Indices: 51024882--51024959 Score: 111
Period size: 26 Copynumber: 2.9 Consensus size: 26
51024872 TTGTTAAAAC
51024882 TCTTCTAAAAGAAAACTCAAGAGAAAT
1 TCTT-TAAAAGAAAACTCAAGAGAAAT
* *
51024909 TATTTAAAAGAAAACTTAAGAGAAAT
1 TCTTTAAAAGAAAACTCAAGAGAAAT
*
51024935 TCTTTAAAATAAAACTCAAAGAGAA
1 TCTTTAAAAGAAAACTC-AAGAGAA
51024960 TTTTATTAAC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
26 35 0.78
27 10 0.22
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.24
Consensus pattern (26 bp):
TCTTTAAAAGAAAACTCAAGAGAAAT
Found at i:51024968 original size:27 final size:26
Alignment explanation
Indices: 51024887--51024968 Score: 87
Period size: 26 Copynumber: 3.1 Consensus size: 26
51024877 AAAACTCTTC
*
51024887 TAAAAGAAAACTCAAGAGAA-ATTATT
1 TAAAAGAAAACTCAAGAGAATTTTA-T
* *
51024913 TAAAAGAAAACTTAAGAGAAATTCT-T
1 TAAAAGAAAACTCAAGAG-AATTTTAT
*
51024939 TAAAATAAAACTCAAAGAGAATTTTAT
1 TAAAAGAAAACTC-AAGAGAATTTTAT
51024966 TAA
1 TAA
51024969 CTCAAAGTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
26 34 0.74
27 11 0.24
28 1 0.02
ACGTcount: A:0.56, C:0.07, G:0.10, T:0.27
Consensus pattern (26 bp):
TAAAAGAAAACTCAAGAGAATTTTAT
Found at i:51025691 original size:13 final size:13
Alignment explanation
Indices: 51025675--51025709 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
51025665 GGATTTTGTA
51025675 AAATATTTAATAT
1 AAATATTTAATAT
51025688 AAATATTTAATAT
1 AAATATTTAATAT
51025701 AAATATTTA
1 AAATATTTA
51025710 TGGAGATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATATTTAATAT
Found at i:51027486 original size:35 final size:34
Alignment explanation
Indices: 51027440--51027512 Score: 83
Period size: 34 Copynumber: 2.1 Consensus size: 34
51027430 AATGATGTTA
* **
51027440 AATTGAATGTATTTATTATGTACATAGCCAAATTG
1 AATTGAATGTATGTA-TAACTACATAGCCAAATTG
* * *
51027475 AATTGTATGTATGTATAACTACATTGCCGAATTG
1 AATTGAATGTATGTATAACTACATAGCCAAATTG
51027509 AATT
1 AATT
51027513 TAGCATAGAA
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
34 19 0.59
35 13 0.41
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.40
Consensus pattern (34 bp):
AATTGAATGTATGTATAACTACATAGCCAAATTG
Found at i:51027742 original size:44 final size:43
Alignment explanation
Indices: 51027629--51027837 Score: 178
Period size: 43 Copynumber: 4.9 Consensus size: 43
51027619 TCTGATATGT
*
51027629 GATTTCTTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
1 GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
**
51027672 GATTTCATGTAAGACCACGTCTGGGACGTTGGTGTCGATTTGA
1 GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
* * * * * * *
51027715 GGTTTACGTGTAAGAGCATGTTTGGGACATTGGCATC-ATAT-A
1 GATTT-CATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
* * *
51027757 TGATTTCGTGTAAGACC-CTGCCTGGGACAG-TGGCATCAATAGTT--
1 -GATTTCATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGAT--TTGA
* * *
51027801 GATTACATGTAAGACAACGTCTAGGACGTTGGCATCG
1 GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCG
51027838 TACGAGCTTT
Statistics
Matches: 132, Mismatches: 25, Indels: 18
0.75 0.14 0.10
Matches are distributed among these distances:
42 26 0.20
43 80 0.61
44 25 0.19
45 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (43 bp):
GATTTCATGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
Found at i:51034522 original size:27 final size:27
Alignment explanation
Indices: 51034492--51034704 Score: 264
Period size: 27 Copynumber: 7.9 Consensus size: 27
51034482 GGTATAACAA
* *
51034492 TCATTTTACCCTATAGGGATATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
**
51034519 TCATTTTACCCTATGGGGGTATTTCTT
1 TCATTTTACCCTATGGGGGTATTTCGG
* * **
51034546 TCATTCTACCCTATAGGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCGG
*
51034573 TTATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
51034600 TCATTTTACACTATGGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
** *
51034627 TCATTTTACCCTATGAAGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * * *
51034654 TTATTCTACCCTATGGGGTTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
51034681 TCATTTTACCCTATGGAGGTATTT
1 TCATTTTACCCTATGGGGGTATTT
51034705 TGATCATAAC
Statistics
Matches: 156, Mismatches: 30, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 156 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGG
Found at i:51034600 original size:81 final size:81
Alignment explanation
Indices: 51034489--51034704 Score: 299
Period size: 81 Copynumber: 2.7 Consensus size: 81
51034479 AAGGGTATAA
* * **
51034489 CAATCATTTTACCCTATAGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCTTTCATTCTA
1 CAATTATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTA
*
51034554 CCCTAT-AGGGGTATTT
66 CCCTATGA-AGGTATTT
* * *
51034570 CAATTATTTTACCCTATGGGGGTATTTCGGTCATTTTACACTATGGGGGTATTTCGGTCATTTTA
1 CAATTATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTA
51034635 CCCTATGAAGGTATTT
66 CCCTATGAAGGTATTT
* * * * *
51034651 CAGTTATTCTACCCTATGGGGTTATTTTGGTCATTTTACCCTATGGAGGTATTT
1 CAATTATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGGGGGTATTT
51034705 TGATCATAAC
Statistics
Matches: 120, Mismatches: 14, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
81 119 0.99
82 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.19, T:0.43
Consensus pattern (81 bp):
CAATTATTTTACCCTATGGGGATATTTCGGTCATTTTACCCTATGGGGGTATTTCGGTCATTCTA
CCCTATGAAGGTATTT
Found at i:51042519 original size:23 final size:24
Alignment explanation
Indices: 51042475--51042520 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 24
51042465 TTTCTCACAT
* **
51042475 TTTCAATTCAATCATTTTTCCACC
1 TTTCAATTCAATAATTAATCCACC
51042499 TTTCAA-TCAATAATTAATCCAC
1 TTTCAATTCAATAATTAATCCAC
51042521 AAACTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.33, C:0.26, G:0.00, T:0.41
Consensus pattern (24 bp):
TTTCAATTCAATAATTAATCCACC
Found at i:51042674 original size:3 final size:3
Alignment explanation
Indices: 51042666--51042721 Score: 76
Period size: 3 Copynumber: 18.7 Consensus size: 3
51042656 TCACTCATCT
* * * *
51042666 TAA TAA TAA TAA TAA TAT TAA TAT TAA TAG TAA TAG TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51042714 TAA TAA TA
1 TAA TAA TA
51042722 CTTACCTCAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (3 bp):
TAA
Found at i:51043496 original size:22 final size:24
Alignment explanation
Indices: 51043466--51043515 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
51043456 ATGTATTAGT
*
51043466 TAATAATAATAATAACAATATATTA
1 TAATAATCAT-ATAACAATATATTA
* *
51043491 TAATAATCATATAATAATATTTTA
1 TAATAATCATATAACAATATATTA
51043515 T
1 T
51043516 TCACAAATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (24 bp):
TAATAATCATATAACAATATATTA
Found at i:51045828 original size:9 final size:9
Alignment explanation
Indices: 51045814--51045841 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
51045804 AAACAAAGTC
51045814 AGTCAAAAA
1 AGTCAAAAA
51045823 AGTCAAAAA
1 AGTCAAAAA
51045832 AGTCAAAAA
1 AGTCAAAAA
51045841 A
1 A
51045842 TACGAAATCC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.68, C:0.11, G:0.11, T:0.11
Consensus pattern (9 bp):
AGTCAAAAA
Found at i:51053819 original size:83 final size:82
Alignment explanation
Indices: 51053714--51053910 Score: 254
Period size: 82 Copynumber: 2.4 Consensus size: 82
51053704 ATCAATTTTA
** **
51053714 TTAAACGGC-AGAATTAAATCTCGAAACAAAATTATTTGA-TTAAGTCTTCGTTTGGAAACAAAA
1 TTAAACGGCGAGAA-TAAATCTCGAAAC-AAATTATTCAATTTAAGTC-TAATTTGGAAACAAAA
*
51053777 TCAAGATCAAATAAAATCTG
63 TCAAAATCAAATAAAATCTG
* *
51053797 TTAAACGGCGAGAATAAATCTCGAAACAGATTATTCAATTTAATTCTAATTTGGAAACAAAATCA
1 TTAAACGGCGAGAATAAATCTCGAAACAAATTATTCAATTTAAGTCTAATTTGGAAACAAAATCA
*
51053862 AAATCGAATAAAATCTG
66 AAATCAAATAAAATCTG
* * *
51053879 TTAAATGGCGAGAATAAATCCCGAAATAAATT
1 TTAAACGGCGAGAATAAATCTCGAAACAAATT
51053911 TTATTTCATT
Statistics
Matches: 100, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
82 68 0.68
83 28 0.28
84 4 0.04
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.28
Consensus pattern (82 bp):
TTAAACGGCGAGAATAAATCTCGAAACAAATTATTCAATTTAAGTCTAATTTGGAAACAAAATCA
AAATCAAATAAAATCTG
Found at i:51054025 original size:23 final size:23
Alignment explanation
Indices: 51053996--51054044 Score: 82
Period size: 23 Copynumber: 2.1 Consensus size: 23
51053986 CCGAAGTAGA
51053996 TTTTATTTAA-TTTAATTACTCGT
1 TTTTATTTAATTTTAA-TACTCGT
51054019 TTTTATTTAATTTTAATACTCGT
1 TTTTATTTAATTTTAATACTCGT
51054042 TTT
1 TTT
51054045 AGAAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
23 20 0.80
24 5 0.20
ACGTcount: A:0.24, C:0.08, G:0.04, T:0.63
Consensus pattern (23 bp):
TTTTATTTAATTTTAATACTCGT
Found at i:51054052 original size:110 final size:108
Alignment explanation
Indices: 51053909--51054120 Score: 259
Period size: 110 Copynumber: 1.9 Consensus size: 108
51053899 CCGAAATAAA
* * * *
51053909 TTTTATTTCATTTTAATTTCTCTTTTGGCAATAAAATAAAAATTGGAATACAATA-TGTTAAATG
1 TTTTATTTAATTTTAATTACTCTTTTAGAAATAAAATAAAAATTGGAAT--AATACTGTTAAA-G
* **
51053973 GCGGGAAA-AAATCCCGAAGTAGATTTTATTTAATTTAATTACTCGT
63 GC-AGAAATAAATCCCGAAACAGATTTTATTTAATTTAATTACTCGT
* *
51054019 TTTTATTTAATTTTAA-TACTCGTTTTAGAAATAAAATCAAAATTGGAATAATACCTGTTGAAGG
1 TTTTATTTAATTTTAATTACTC-TTTTAGAAATAAAATAAAAATTGGAATAATA-CTGTTAAAGG
*
51054083 CAGAAATAAATCTCGAAACAGATTTTATTTAATTTAAT
64 CAGAAATAAATCCCGAAACAGATTTTATTTAATTTAAT
51054121 GTTCATTTTG
Statistics
Matches: 88, Mismatches: 10, Indels: 9
0.82 0.09 0.08
Matches are distributed among these distances:
108 8 0.09
109 35 0.40
110 45 0.51
ACGTcount: A:0.39, C:0.09, G:0.12, T:0.40
Consensus pattern (108 bp):
TTTTATTTAATTTTAATTACTCTTTTAGAAATAAAATAAAAATTGGAATAATACTGTTAAAGGCA
GAAATAAATCCCGAAACAGATTTTATTTAATTTAATTACTCGT
Found at i:51054155 original size:38 final size:39
Alignment explanation
Indices: 51054104--51054179 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
51054094 CTCGAAACAG
*
51054104 ATTTTATTTAA-TTTAAT-GTTCATTTTGGAAATAAAATA
1 ATTTTATTTAATTTTAATACTT-ATTTTGGAAATAAAATA
*
51054142 ATTTTATTTAATTTTAATACTTGTTTTGGAAATAAAAT
1 ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAAT
51054180 TAAAATTGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 11 0.32
39 21 0.62
40 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.08, T:0.51
Consensus pattern (39 bp):
ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATA
Found at i:51054162 original size:124 final size:126
Alignment explanation
Indices: 51054019--51054268 Score: 351
Period size: 124 Copynumber: 2.0 Consensus size: 126
51054009 AATTACTCGT
* * *
51054019 TTTTATTTAATTTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAATACCTGTTGAA-GG
1 TTTTATTTAATTTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAAAACATGTTAAACGG
* * **
51054083 CAGAAATAAATCTCGAAACAGATTTTATTTAATTT-AATGTTCATTTTGGAAATAAAATAA
66 CAGAAATAAATCACAAAACAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
* * * *
51054143 TTTTATTTAATTTTAATACTTGTTTTGGAAATAAAATTAAAATTGGAATAAAATATGTTAAACGG
1 TTTTATTTAATTTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAAAACATGTTAAACGG
* ** *
51054208 TAGGGATAAATCACAAAATAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
66 CAGAAATAAATCACAAAACAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
51054269 AAAATGTAAT
Statistics
Matches: 109, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
124 55 0.50
125 31 0.28
126 23 0.21
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.39
Consensus pattern (126 bp):
TTTTATTTAATTTTAATACTCGTTTTAGAAATAAAATCAAAATTGGAATAAAACATGTTAAACGG
CAGAAATAAATCACAAAACAGATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAA
Found at i:51054236 original size:87 final size:86
Alignment explanation
Indices: 51054142--51054439 Score: 280
Period size: 87 Copynumber: 3.5 Consensus size: 86
51054132 AAATAAAATA
* * *
51054142 ATTTTATTTAATTTTAATACTTGTTTTGGAAATAAAATTAAAATTGGAATAAAATATGTTAAACG
1 ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATAAAAAATGGAATAAAAT-TGTTAAACG
* * *
51054207 GTAGGGATAAATCACAAAATAG
65 GTAGGAATAAATCTCAAAACAG
* * * * *
51054229 ATTTTATTTAATTTAAATACTCATTTTGGAAATAAAATAAAAAATGTAATAAAATTCATTGAACG
1 ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATAAAAAATGGAATAAAATT-GTTAAACG
**
51054294 GT-GAGAATAAATCTTGAAACAG
65 GTAG-GAATAAATCTCAAAACAG
* * * * * * * *
51054316 ATTTTATTT-ATCTCTAATTCTCA-TTTAGAAATAAAATCAGAAGTGGAATAAAATCCGTTAAAC
1 ATTTTATTTAAT-TTTAATACTTATTTTGGAAATAAAATAAAAAATGGAATAAAAT-TGTTAAAC
*
51054379 GGCAGGAATAAATCTCAAAACAG
64 GGTAGGAATAAATCTCAAAACAG
** ** *
51054402 ATTTTATTTAACATTAATTTTTATTTT-CAAATAAAATA
1 ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATA
51054440 CTTTTTCTTT
Statistics
Matches: 170, Mismatches: 34, Indels: 15
0.78 0.16 0.07
Matches are distributed among these distances:
86 78 0.46
87 92 0.54
ACGTcount: A:0.45, C:0.08, G:0.11, T:0.36
Consensus pattern (86 bp):
ATTTTATTTAATTTTAATACTTATTTTGGAAATAAAATAAAAAATGGAATAAAATTGTTAAACGG
TAGGAATAAATCTCAAAACAG
Found at i:51054420 original size:86 final size:84
Alignment explanation
Indices: 51054170--51054439 Score: 252
Period size: 86 Copynumber: 3.1 Consensus size: 84
51054160 ACTTGTTTTG
* * * * * *
51054170 GAAATAAAATTAAAATTGGAATAAAATATGTTAAACGGTAGGGATAAATCACAAAATAGATTTTA
1 GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGG-AGGAATAAATCTCAAAACAGATTTTA
* * *
51054235 TTTAATTTAAATACTCATTTTG
65 TTTAACTT-AATTCTCA-TTTA
* * * * * **
51054257 GAAATAAAATAAAAAATGTAATAAAATTCATTGAACGGTGAGAATAAATCTTGAAACAGATTTTA
1 GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGGAG-GAATAAATCTCAAAACAGATTTTA
*
51054322 TTTATCTCTAATTCTCATTTA
65 TTTAACT-TAATTCTCATTTA
* * * *
51054343 GAAATAAAATCAGAAGTGGAATAAAATCCGTTAAACGGCAGGAATAAATCTCAAAACAGATTTTA
1 GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGG-AGGAATAAATCTCAAAACAGATTTTA
* * *
51054408 TTTAACATTAATTTTTATTTT
65 TTTAAC-TTAATTCTCATTTA
*
51054429 CAAATAAAATA
1 GAAATAAAATA
51054440 CTTTTTCTTT
Statistics
Matches: 146, Mismatches: 33, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
86 81 0.55
87 64 0.44
88 1 0.01
ACGTcount: A:0.47, C:0.09, G:0.11, T:0.33
Consensus pattern (84 bp):
GAAATAAAATAAAAAATGGAATAAAATACGTTAAACGGAGGAATAAATCTCAAAACAGATTTTAT
TTAACTTAATTCTCATTTA
Found at i:51054592 original size:14 final size:14
Alignment explanation
Indices: 51054573--51054611 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
51054563 AAATAGTTAT
51054573 TTATATAAAATAAA
1 TTATATAAAATAAA
*
51054587 TTATATATAATAAA
1 TTATATAAAATAAA
* *
51054601 ATAAATAAAAT
1 TTATATAAAAT
51054612 GTATTTAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
TTATATAAAATAAA
Found at i:51057653 original size:183 final size:184
Alignment explanation
Indices: 51057337--51057671 Score: 473
Period size: 183 Copynumber: 1.8 Consensus size: 184
51057327 AGAATTCAGA
* * *
51057337 ACACCCAATGGACAAACACTAAACCTGAGCCCCAAAAACATGCCCAGTTTTCTATGTTCCCTAGG
1 ACACCCAATAGACAAACACTAAACCTGAGCCCCAAAAACAAGCCCAGTTTTCTATGCTCCCTAGG
* * * *
51057402 TTTAAGCACATGGAAACACATCATCCCATTAACCCGATATTTTACCAAGCTCTTCCTCACGACCC
66 TTTAAGCACATGAAAACACATCACCCCATTAACCCAATATTTTACCAAACTCTTCCTCACGACCC
*
51057467 TACAAAAGTCA-TTCCTATACAAACATGCCACAGAAATTACCAAACTCTTCCTC
131 TACAAAACTCATTTCCTATACAAACATGCCACAGAAATTACCAAACTCTTCCTC
* *
51057520 ACACCCAATAGACAAGCACTAAA-CTCGAG-CCCAAAAACAAGCGCAGTTTTCTATGCTCCCTAG
1 ACACCCAATAGACAAACACTAAACCT-GAGCCCCAAAAACAAGCCCAGTTTTCTATGCTCCCTAG
* * * *
51057583 GTTTGAA-CACTTGAAATACACTTTACCCCATTAACCCAATATTTTACCAAATTCTTCCTCAC-A
65 GTTT-AAGCACATGAAA-ACACATCACCCCATTAACCCAATATTTTACCAAACTCTTCCTCACGA
51057646 CCCCTACAAAACTCATTTCCTATACA
128 -CCCTACAAAACTCATTTCCTATACA
51057672 GAGACCCCAT
Statistics
Matches: 133, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
182 45 0.34
183 78 0.59
184 10 0.08
ACGTcount: A:0.35, C:0.32, G:0.09, T:0.24
Consensus pattern (184 bp):
ACACCCAATAGACAAACACTAAACCTGAGCCCCAAAAACAAGCCCAGTTTTCTATGCTCCCTAGG
TTTAAGCACATGAAAACACATCACCCCATTAACCCAATATTTTACCAAACTCTTCCTCACGACCC
TACAAAACTCATTTCCTATACAAACATGCCACAGAAATTACCAAACTCTTCCTC
Found at i:51059527 original size:10 final size:10
Alignment explanation
Indices: 51059512--51059542 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
51059502 AACAATTTCT
51059512 AAATTTATCA
1 AAATTTATCA
51059522 AAATTTATCA
1 AAATTTATCA
*
51059532 AAATTTTTCA
1 AAATTTATCA
51059542 A
1 A
51059543 TTTATAACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (10 bp):
AAATTTATCA
Found at i:51059798 original size:34 final size:35
Alignment explanation
Indices: 51059740--51059806 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
51059730 CAAACACCAG
51059740 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
51059775 AAAATATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
51059807 TATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:51060922 original size:18 final size:17
Alignment explanation
Indices: 51060899--51061051 Score: 104
Period size: 18 Copynumber: 9.0 Consensus size: 17
51060889 TTATTATTAA
51060899 ATATAATTTAATAAAAAT
1 ATATAATTTAAT-AAAAT
51060917 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
51060934 ATATGAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
* * **
51060952 -CATAATAT-ATAATGCT
1 ATATAATTTAATAA-AAT
* *
51060968 ATAAAATATAATTGAAAAT
1 ATATAATTTAA-T-AAAAT
* *
51060987 A-ATTA-TT-AT-TAA-
1 ATATAATTTAATAAAAT
51060999 ATATAATTTAATAAAAAT
1 ATATAATTTAAT-AAAAT
51061017 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
*
51061034 ATATGAATTTACTAAAAT
1 ATAT-AATTTAATAAAAT
51061052 CATAATATAT
Statistics
Matches: 105, Mismatches: 17, Indels: 26
0.71 0.11 0.18
Matches are distributed among these distances:
12 1 0.01
13 5 0.05
14 2 0.02
15 6 0.06
16 6 0.06
17 29 0.28
18 51 0.49
19 3 0.03
20 2 0.02
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:51060995 original size:100 final size:100
Alignment explanation
Indices: 51060885--51061108 Score: 448
Period size: 100 Copynumber: 2.2 Consensus size: 100
51060875 ATATTTTAAC
51060885 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTTACTAAA
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTTACTAAA
51060950 ATCATAATATATAATGCTATAAAATATAATTGAAA
66 ATCATAATATATAATGCTATAAAATATAATTGAAA
51060985 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTTACTAAA
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTTACTAAA
51061050 ATCATAATATATAATGCTATAAAATATAATTGAAA
66 ATCATAATATATAATGCTATAAAATATAATTGAAA
51061085 ATAATTATTATTAAATATAATTTA
1 ATAATTATTATTAAATATAATTTA
51061109 TAATCTACTT
Statistics
Matches: 124, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
100 124 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (100 bp):
ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATATATGAATTTACTAAA
ATCATAATATATAATGCTATAAAATATAATTGAAA
Found at i:51064743 original size:20 final size:19
Alignment explanation
Indices: 51064729--51064778 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 19
51064719 ATTTTCAAGA
51064729 ATTTACCAAATTTTTTTAAG
1 ATTTACCAAA-TTTTTTAAG
*
51064749 ATTTA-CTAATATTTTTAAG
1 ATTTACCAAAT-TTTTTAAG
51064768 ATTATACCAAA
1 ATT-TACCAAA
51064779 ATTTCTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
18 1 0.04
19 14 0.56
20 7 0.28
21 3 0.12
ACGTcount: A:0.40, C:0.10, G:0.04, T:0.46
Consensus pattern (19 bp):
ATTTACCAAATTTTTTAAG
Found at i:51064782 original size:20 final size:19
Alignment explanation
Indices: 51064716--51064782 Score: 71
Period size: 20 Copynumber: 3.4 Consensus size: 19
51064706 TTTTTTTATA
*
51064716 AAAATTTTCAAGAATTTACC
1 AAAATTTTTAAG-ATTTACC
* *
51064736 AAATTTTTTTAAGATTTACT
1 AAA-ATTTTTAAGATTTACC
*
51064756 AATATTTTTAAGATTATACC
1 AAAATTTTTAAGATT-TACC
51064776 AAAATTT
1 AAAATTT
51064783 CTAAACCTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
19 11 0.29
20 20 0.53
21 7 0.18
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (19 bp):
AAAATTTTTAAGATTTACC
Found at i:51065264 original size:65 final size:65
Alignment explanation
Indices: 51065178--51065312 Score: 218
Period size: 65 Copynumber: 2.1 Consensus size: 65
51065168 GATTTTAAAG
* *
51065178 TAAAGGTGTTTGTGGGTCGAGTCGAGTTGA-ACTTAAGTATAATATTAACATAATATAAAGTATT
1 TAAATGTGTTTGTGGGTCGAGTCGAGTT-ATACTTAAGCATAATATTAACATAATATAAAGTATT
51065242 A
65 A
* *
51065243 TAAATGTGTTTGTGGGTCGAGTCGAGTTATACTTAAGCATGATATTAACATAGTATAAAGTATTA
1 TAAATGTGTTTGTGGGTCGAGTCGAGTTATACTTAAGCATAATATTAACATAATATAAAGTATTA
51065308 TAAAT
1 TAAAT
51065313 TTAAAAATAG
Statistics
Matches: 65, Mismatches: 4, Indels: 2
0.92 0.06 0.03
Matches are distributed among these distances:
64 1 0.02
65 64 0.98
ACGTcount: A:0.36, C:0.07, G:0.21, T:0.36
Consensus pattern (65 bp):
TAAATGTGTTTGTGGGTCGAGTCGAGTTATACTTAAGCATAATATTAACATAATATAAAGTATTA
Found at i:51065333 original size:65 final size:65
Alignment explanation
Indices: 51065199--51065334 Score: 148
Period size: 65 Copynumber: 2.1 Consensus size: 65
51065189 GTGGGTCGAG
* ***** * * *
51065199 TCGAGTTGAACTTAAGTATAATATTAACATAATATAAAGTATTATAAATGTGTTTGTGGGTCGAG
1 TCGAGTTGAACTTAAGCATAATATTAACATAATATAAAGTATTATAAATGTAAAAATAGGCCGAC
* * *
51065264 TCGAGTT-ATACTTAAGCATGATATTAACATAGTATAAAGTATTATAAATTTAAAAATAGGCCGA
1 TCGAGTTGA-ACTTAAGCATAATATTAACATAATATAAAGTATTATAAATGTAAAAATAGGCCGA
51065328 C
65 C
51065329 TCGAGT
1 TCGAGT
51065335 CAAGTTCTGG
Statistics
Matches: 58, Mismatches: 12, Indels: 2
0.81 0.17 0.03
Matches are distributed among these distances:
64 1 0.02
65 57 0.98
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.35
Consensus pattern (65 bp):
TCGAGTTGAACTTAAGCATAATATTAACATAATATAAAGTATTATAAATGTAAAAATAGGCCGAC
Found at i:51074491 original size:26 final size:28
Alignment explanation
Indices: 51074456--51074507 Score: 90
Period size: 26 Copynumber: 1.9 Consensus size: 28
51074446 TTTTTAAATT
51074456 AAAGGTTTAA-TTAAAA-TTTCAAAAAA
1 AAAGGTTTAATTTAAAATTTTCAAAAAA
51074482 AAAGGTTTAATTTAAAATTTTCAAAA
1 AAAGGTTTAATTTAAAATTTTCAAAA
51074508 TTTGAGGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 10 0.42
27 6 0.25
28 8 0.33
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.35
Consensus pattern (28 bp):
AAAGGTTTAATTTAAAATTTTCAAAAAA
Found at i:51074586 original size:31 final size:33
Alignment explanation
Indices: 51074525--51074593 Score: 88
Period size: 31 Copynumber: 2.2 Consensus size: 33
51074515 GGATTAATGT
* *
51074525 AAATTTTTAAAAAGTTTGCGGAAGGTCTAATTA
1 AAATTTTTAAAAACTTTGCGGAAGGCCTAATTA
*
51074558 AAATTTTT-AAAACTTT-TGGAAGGCCTAATTA
1 AAATTTTTAAAAACTTTGCGGAAGGCCTAATTA
*
51074589 GAATT
1 AAATT
51074594 CTAAAAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
31 17 0.53
32 7 0.22
33 8 0.25
ACGTcount: A:0.39, C:0.07, G:0.16, T:0.38
Consensus pattern (33 bp):
AAATTTTTAAAAACTTTGCGGAAGGCCTAATTA
Found at i:51079852 original size:22 final size:22
Alignment explanation
Indices: 51079827--51079868 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
51079817 AAAAGACAAA
51079827 AAATTAAATAAAAAATTAAAAT
1 AAATTAAATAAAAAATTAAAAT
***
51079849 AAATTTTCTAAAAAATTAAA
1 AAATTAAATAAAAAATTAAA
51079869 GTACCAAATA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (22 bp):
AAATTAAATAAAAAATTAAAAT
Found at i:51092706 original size:4 final size:4
Alignment explanation
Indices: 51092697--51092757 Score: 113
Period size: 4 Copynumber: 15.2 Consensus size: 4
51092687 AAAAATTCCA
*
51092697 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ATAT
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT
51092745 ACAT ACAT ACAT A
1 ACAT ACAT ACAT A
51092758 ATTTATCTAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 55 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ACAT
Done.