Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 168 of 182
Found at i:51441646 original size:19 final size:19
Alignment explanation
Indices: 51441605--51441666 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
51441595 ATTGAATTTG
* * * *
51441605 AAAATTGGACTTGAGATCG
1 AAAATTAGACTCGAGAACC
51441624 AAAATTAGACTCGAGAACC
1 AAAATTAGACTCGAGAACC
*
51441643 AAAAATTGAGA-TCGAGACCC
1 -AAAATT-AGACTCGAGAACC
51441663 AAAA
1 AAAA
51441667 CTAGTTGAAC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
19 19 0.53
20 14 0.39
21 3 0.08
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (19 bp):
AAAATTAGACTCGAGAACC
Found at i:51441649 original size:20 final size:20
Alignment explanation
Indices: 51441624--51441666 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
51441614 CTTGAGATCG
51441624 AAAATT-AGACTCGAGAACCA
1 AAAATTGAGA-TCGAGAACCA
*
51441644 AAAATTGAGATCGAGACCCA
1 AAAATTGAGATCGAGAACCA
51441664 AAA
1 AAA
51441667 CTAGTTGAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 18 0.86
21 3 0.14
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (20 bp):
AAAATTGAGATCGAGAACCA
Found at i:51442331 original size:31 final size:31
Alignment explanation
Indices: 51442291--51442390 Score: 114
Period size: 31 Copynumber: 3.3 Consensus size: 31
51442281 TATTAAATTA
*
51442291 AATTAAATATTTATCTTGATAGTATTTTATT
1 AATTTAATATTTATCTTGATAGTATTTTATT
* * * **
51442322 AATTTAATATTAAT-GTGAGA-TATTAAATTT
1 AATTTAATATTTATCTTGATAGTATTTTA-TT
*
51442352 GATTTAATATTTATCTTGATAGTATTTTATT
1 AATTTAATATTTATCTTGATAGTATTTTATT
51442383 AATTTAAT
1 AATTTAAT
51442391 GTGAGTAATT
Statistics
Matches: 53, Mismatches: 13, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
29 5 0.09
30 18 0.34
31 25 0.47
32 5 0.09
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (31 bp):
AATTTAATATTTATCTTGATAGTATTTTATT
Found at i:51447511 original size:63 final size:63
Alignment explanation
Indices: 51447412--51447537 Score: 198
Period size: 63 Copynumber: 2.0 Consensus size: 63
51447402 TTATCTACCC
* * * *
51447412 TTAATGCTCTCGTCTTATGCATTTTGAAATTAAACCGGTCAGTCTTTACTTGAGCACAAAAAA
1 TTAATGCTCTCGCCATACGCATTTTGAAATTAAACCGGTCAATCTTTACTTGAGCACAAAAAA
* *
51447475 TTAATGCTCTCGCCATACGCATTTTGAAATTAAACCGGTCAATTTTTACTTGAGCATAAAAAA
1 TTAATGCTCTCGCCATACGCATTTTGAAATTAAACCGGTCAATCTTTACTTGAGCACAAAAAA
51447538 ATTATTTAAT
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
63 57 1.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.34
Consensus pattern (63 bp):
TTAATGCTCTCGCCATACGCATTTTGAAATTAAACCGGTCAATCTTTACTTGAGCACAAAAAA
Found at i:51449714 original size:22 final size:20
Alignment explanation
Indices: 51449689--51449734 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 20
51449679 AATTAATGAT
51449689 ATTATAAAATTAAAGAGATTAA
1 ATTATAAAATT--AGAGATTAA
51449711 ATTATTAAAATGTAGAGATTAA
1 ATTA-TAAAAT-TAGAGATTAA
51449733 AT
1 AT
51449735 ATCAAATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 15 0.68
23 6 0.27
24 1 0.05
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (20 bp):
ATTATAAAATTAGAGATTAA
Found at i:51455281 original size:27 final size:28
Alignment explanation
Indices: 51455213--51455283 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
51455203 AACCCTGTGA
* *
51455213 CAAGTGGTATCCGAG-CTAGATTCAAAC
1 CAAGTGGTATCCAAGCCAAGATTCAAAC
* *
51455240 CAAGTAAGTATCCAAGCCAAG-TTCGAAC
1 CAAGT-GGTATCCAAGCCAAGATTCAAAC
51455268 CAAGTGGTATCCAAGC
1 CAAGTGGTATCCAAGC
51455284 TGTTGGTTCG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
27 15 0.41
28 19 0.51
29 3 0.08
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (28 bp):
CAAGTGGTATCCAAGCCAAGATTCAAAC
Found at i:51455318 original size:29 final size:29
Alignment explanation
Indices: 51455260--51455324 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
51455250 TCCAAGCCAA
* *
51455260 GTTCGAACCAAGTGGTATCCAAGCTGTTG
1 GTTCGAACCAAGTGATATCCAAGCTATTG
** *
51455289 GTTCGAACCAAGTGATATCTGAGTTATTG
1 GTTCGAACCAAGTGATATCCAAGCTATTG
51455318 GTTCGAA
1 GTTCGAA
51455325 GGCACCGTTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (29 bp):
GTTCGAACCAAGTGATATCCAAGCTATTG
Found at i:51456365 original size:17 final size:18
Alignment explanation
Indices: 51456338--51456371 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51456328 CCACAAGTTG
*
51456338 GGAAGAAGAAACTCAAGA
1 GGAAGAAGAAACACAAGA
51456356 GGAA-AAGAAACACAAG
1 GGAAGAAGAAACACAAG
51456372 TTGGTAACGG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.59, C:0.12, G:0.26, T:0.03
Consensus pattern (18 bp):
GGAAGAAGAAACACAAGA
Found at i:51468307 original size:24 final size:24
Alignment explanation
Indices: 51468280--51468329 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
51468270 TTTTCTTCTT
*
51468280 TTAA-CTTTTAACTTTTCATCTTTC
1 TTAATCTTTTAACATTT-ATCTTTC
* *
51468304 TTAATTTTTTACCATTTATCTTTC
1 TTAATCTTTTAACATTTATCTTTC
51468328 TT
1 TT
51468330 TTAACCCTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
24 13 0.59
25 9 0.41
ACGTcount: A:0.20, C:0.18, G:0.00, T:0.62
Consensus pattern (24 bp):
TTAATCTTTTAACATTTATCTTTC
Found at i:51469492 original size:23 final size:22
Alignment explanation
Indices: 51469466--51469509 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
51469456 ATCCCAAAAA
* *
51469466 TGATGAAATGAAGGAAAATTTTT
1 TGAT-AAAAGAAGAAAAATTTTT
*
51469489 TGATAAAAGATGAAAAATTTT
1 TGATAAAAGAAGAAAAATTTT
51469510 ACTATGATGC
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.48, C:0.00, G:0.18, T:0.34
Consensus pattern (22 bp):
TGATAAAAGAAGAAAAATTTTT
Found at i:51470776 original size:9 final size:9
Alignment explanation
Indices: 51470762--51470837 Score: 98
Period size: 9 Copynumber: 8.4 Consensus size: 9
51470752 TTTGGTTAAA
51470762 AATTAACCG
1 AATTAACCG
*
51470771 AATTAACCT
1 AATTAACCG
*
51470780 AATTAACCA
1 AATTAACCG
*
51470789 AATTACCCG
1 AATTAACCG
*
51470798 AATTAACTG
1 AATTAACCG
*
51470807 AATTACCCG
1 AATTAACCG
*
51470816 AATTACCCG
1 AATTAACCG
51470825 AATTAACCG
1 AATTAACCG
51470834 AATT
1 AATT
51470838 GAATCACTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
9 58 1.00
ACGTcount: A:0.42, C:0.24, G:0.08, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:51470961 original size:18 final size:18
Alignment explanation
Indices: 51470935--51470984 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
51470925 TTTATGATTA
* *
51470935 GGTTGGGTTGGGTAATTG
1 GGTTTGGTTGGATAATTG
* *
51470953 GGTTTGGTTGAATACTTG
1 GGTTTGGTTGGATAATTG
51470971 GGTTTGGATTGGAT
1 GGTTTGG-TTGGAT
51470985 TTAGGTGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
18 21 0.81
19 5 0.19
ACGTcount: A:0.14, C:0.02, G:0.42, T:0.42
Consensus pattern (18 bp):
GGTTTGGTTGGATAATTG
Found at i:51473916 original size:25 final size:25
Alignment explanation
Indices: 51473807--51473933 Score: 89
Period size: 25 Copynumber: 5.1 Consensus size: 25
51473797 GTACATGTAT
* *
51473807 GCTCATACGAGTTGTA-AACG-GAAA
1 GCTCATACGAGCTGAATAACGAG-AA
* * * *
51473831 GCTCCTCCGATCTGAATAACAAGAA
1 GCTCATACGAGCTGAATAACGAGAA
* * * *
51473856 GCTCATGCAAGCTAAATAACGGGAA
1 GCTCATACGAGCTGAATAACGAGAA
*
51473881 GCTCA-AGCGAGCTGAATATCGAGAA
1 GCTCATA-CGAGCTGAATAACGAGAA
** *
51473906 GCTCATACGAGCTGTTTAACGGGAA
1 GCTCATACGAGCTGAATAACGAGAA
51473931 GCT
1 GCT
51473934 TATGTGAGCT
Statistics
Matches: 77, Mismatches: 22, Indels: 7
0.73 0.21 0.07
Matches are distributed among these distances:
24 11 0.14
25 64 0.83
26 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (25 bp):
GCTCATACGAGCTGAATAACGAGAA
Found at i:51473926 original size:50 final size:50
Alignment explanation
Indices: 51473872--51473970 Score: 128
Period size: 50 Copynumber: 2.0 Consensus size: 50
51473862 GCAAGCTAAA
*
51473872 TAACGGGAAGCTCAAGCGAGCTGA-ATATCGAGAAGCTCATACGAGCTGTT
1 TAACGGGAAGCTCAAGCGAGCT-ATAAATCGAGAAGCTCATACGAGCTGTT
* * * * *
51473922 TAACGGGAAGCTTATGTGAGCTATAAATCGGGAAGCTCATATGAGCTGT
1 TAACGGGAAGCTCAAGCGAGCTATAAATCGAGAAGCTCATACGAGCTGT
51473971 GGTGTGTCCA
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
49 1 0.02
50 41 0.98
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.23
Consensus pattern (50 bp):
TAACGGGAAGCTCAAGCGAGCTATAAATCGAGAAGCTCATACGAGCTGTT
Found at i:51473942 original size:25 final size:26
Alignment explanation
Indices: 51473898--51473970 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 26
51473888 CGAGCTGAAT
* * *
51473898 ATCGAGAAGCTCATACGAGCTGTTTA
1 ATCGGGAAGCTCATATGAGCTGTTAA
* * *
51473924 A-CGGGAAGCTTATGTGAGCT-ATAA
1 ATCGGGAAGCTCATATGAGCTGTTAA
51473948 ATCGGGAAGCTCATATGAGCTGT
1 ATCGGGAAGCTCATATGAGCTGT
51473971 GGTGTGTCCA
Statistics
Matches: 36, Mismatches: 9, Indels: 4
0.73 0.18 0.08
Matches are distributed among these distances:
24 3 0.08
25 32 0.89
26 1 0.03
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (26 bp):
ATCGGGAAGCTCATATGAGCTGTTAA
Found at i:51477559 original size:24 final size:24
Alignment explanation
Indices: 51477515--51477585 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
51477505 TTCGTTATAA
* * *
51477515 TTAACTTTTTACCTTTCATCTTCC
1 TTAACTTTTCACTTTTTATCTTCC
**
51477539 TTAACTTTTCACTTTTTATCTTTTT
1 TTAACTTTTCACTTTTTATC-TTCC
*
51477564 TTAACTCTTCACCTTTTTATCT
1 TTAACTTTTCA-CTTTTTATCT
51477586 CATTGTATCC
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
24 17 0.44
25 13 0.33
26 9 0.23
ACGTcount: A:0.17, C:0.24, G:0.00, T:0.59
Consensus pattern (24 bp):
TTAACTTTTCACTTTTTATCTTCC
Found at i:51484171 original size:21 final size:22
Alignment explanation
Indices: 51484146--51484190 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
51484136 AGAAAGTTGC
51484146 AAAAATATAA-AAAAATT-TAAA
1 AAAAAT-TAATAAAAATTGTAAA
*
51484167 AAAAATTAATTAAAATTGTAAA
1 AAAAATTAATAAAAATTGTAAA
51484189 AA
1 AA
51484191 TTATAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 3 0.14
21 12 0.57
22 6 0.29
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (22 bp):
AAAAATTAATAAAAATTGTAAA
Found at i:51490258 original size:9 final size:9
Alignment explanation
Indices: 51490244--51490286 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
51490234 AATTTAAATA
51490244 AAAATAATT
1 AAAATAATT
51490253 AAAATAATT
1 AAAATAATT
*
51490262 AAAATAACT
1 AAAATAATT
*
51490271 -AATTAATT
1 AAAATAATT
*
51490279 AACATAAT
1 AAAATAAT
51490287 ATTAAATATT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
8 6 0.21
9 22 0.79
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (9 bp):
AAAATAATT
Found at i:51493400 original size:9 final size:9
Alignment explanation
Indices: 51493388--51493464 Score: 64
Period size: 9 Copynumber: 8.4 Consensus size: 9
51493378 AAATAAAAAA
51493388 AATTCGGGT
1 AATTCGGGT
51493397 AATTCGGGT
1 AATTCGGGT
* **
51493406 ATTTTTTGGT
1 A-ATTCGGGT
*
51493416 AATTCGGTT
1 AATTCGGGT
***
51493425 AATTCAATT
1 AATTCGGGT
*
51493434 AATTCGGTT
1 AATTCGGGT
51493443 AATTCGGGT
1 AATTCGGGT
*
51493452 AACTCGGGT
1 AATTCGGGT
51493461 AATT
1 AATT
51493465 TTTAAGCAAA
Statistics
Matches: 53, Mismatches: 14, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
9 47 0.89
10 6 0.11
ACGTcount: A:0.25, C:0.10, G:0.23, T:0.42
Consensus pattern (9 bp):
AATTCGGGT
Found at i:51497453 original size:52 final size:52
Alignment explanation
Indices: 51497299--51497458 Score: 146
Period size: 54 Copynumber: 3.0 Consensus size: 52
51497289 AATAGCCAGA
* * *
51497299 ACCCACTTTATCAGATAAAAAAATTTTGGGTTGGGGGTACTAGATGGTTGGC
1 ACCCACTTTATCAGATAAAAAATTTTTGGGTTGGGGGAACTAGATGGTCGGC
* * * ** ** *
51497351 A-TCACCTTTTTCATATTAAAAAATATTTT-TTTATGCTGGCAC-AGTAATGGTCGGC
1 ACCCA-CTTTATCAGA-TAAAAAAT-TTTTGGGT-TGGGGGAACTAG--ATGGTCGGC
51497406 ACCCACTTTATCAGATAAAAAATTTTTGGGTTGGGGGAACTAGATGGTCGGC
1 ACCCACTTTATCAGATAAAAAATTTTTGGGTTGGGGGAACTAGATGGTCGGC
51497458 A
1 A
51497459 TCAGCTATTT
Statistics
Matches: 81, Mismatches: 18, Indels: 18
0.69 0.15 0.15
Matches are distributed among these distances:
51 2 0.02
52 19 0.23
53 20 0.25
54 21 0.26
55 17 0.21
56 2 0.02
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (52 bp):
ACCCACTTTATCAGATAAAAAATTTTTGGGTTGGGGGAACTAGATGGTCGGC
Found at i:51497942 original size:3 final size:3
Alignment explanation
Indices: 51497934--51497967 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
51497924 AAATTAGTCT
51497934 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA T
51497968 CTTGAGACAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (3 bp):
TGA
Found at i:51509693 original size:15 final size:15
Alignment explanation
Indices: 51509673--51509724 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
51509663 ACACACGGCC
51509673 GTGTCACCTGACCGT
1 GTGTCACCTGACCGT
* *
51509688 GTGTCACAC--ACGGCC
1 GTGTCAC-CTGACCG-T
51509703 GTGTCACCTGACCGT
1 GTGTCACCTGACCGT
51509718 GTGTCAC
1 GTGTCAC
51509725 ACACGACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 8
0.71 0.10 0.20
Matches are distributed among these distances:
14 4 0.14
15 21 0.72
16 4 0.14
ACGTcount: A:0.15, C:0.35, G:0.27, T:0.23
Consensus pattern (15 bp):
GTGTCACCTGACCGT
Found at i:51509698 original size:30 final size:30
Alignment explanation
Indices: 51509663--51509729 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
51509653 GCCAAAGGGG
51509663 ACACACGGCCGTGTCACCTGACCGTGTGTC
1 ACACACGGCCGTGTCACCTGACCGTGTGTC
51509693 ACACACGGCCGTGTCACCTGACCGTGTGTC
1 ACACACGGCCGTGTCACCTGACCGTGTGTC
51509723 ACACACG
1 ACACACG
51509730 ACTGAGACAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.19, C:0.37, G:0.25, T:0.18
Consensus pattern (30 bp):
ACACACGGCCGTGTCACCTGACCGTGTGTC
Found at i:51513796 original size:43 final size:43
Alignment explanation
Indices: 51513738--51513839 Score: 141
Period size: 43 Copynumber: 2.3 Consensus size: 43
51513728 CCCAGACATA
* ** *
51513738 GTCTTACATGGAAATCTCGTATCGATGCTAATAGCCCAGCTATG
1 GTCTTACA-CGAAATCTCAAATCGATGCCAATAGCCCAGCTATG
*
51513782 GTCTTACACGAAATCTCAAATCGATGCCAATAGCTCAGCTATG
1 GTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCTATG
*
51513825 GTATTACACGAAATC
1 GTCTTACACGAAATC
51513840 ACACCTCGGA
Statistics
Matches: 52, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
43 44 0.85
44 8 0.15
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
GTCTTACACGAAATCTCAAATCGATGCCAATAGCCCAGCTATG
Found at i:51515066 original size:40 final size:40
Alignment explanation
Indices: 51515022--51515104 Score: 148
Period size: 40 Copynumber: 2.1 Consensus size: 40
51515012 AATATATTCG
* *
51515022 AATGTACTCAAATCCCTCGTTCAATCCAAACTGCGGATTA
1 AATGTACTCAAATCCCGCGTTCAATCCAAACTGCGCATTA
51515062 AATGTACTCAAATCCCGCGTTCAATCCAAACTGCGCATTA
1 AATGTACTCAAATCCCGCGTTCAATCCAAACTGCGCATTA
51515102 AAT
1 AAT
51515105 TCAATAATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.34, C:0.28, G:0.12, T:0.27
Consensus pattern (40 bp):
AATGTACTCAAATCCCGCGTTCAATCCAAACTGCGCATTA
Found at i:51526775 original size:11 final size:11
Alignment explanation
Indices: 51526761--51526785 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51526751 AATTTTATAA
51526761 AAATTATTTTT
1 AAATTATTTTT
51526772 AAATTATTTTT
1 AAATTATTTTT
51526783 AAA
1 AAA
51526786 CTTTTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (11 bp):
AAATTATTTTT
Found at i:51526776 original size:22 final size:20
Alignment explanation
Indices: 51526723--51526776 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 20
51526713 TTATTTTAAC
* *
51526723 TTTTTAAAGTTTAAAATATA
1 TTTTTAAATTTTAAAAAATA
51526743 TATTTTAGAATTTTATAAAAATTA
1 T-TTTTA-AATTTTA-AAAAA-TA
51526767 TTTTTAAATT
1 TTTTTAAATT
51526777 ATTTTTAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
20 1 0.04
21 5 0.18
22 10 0.36
23 9 0.32
24 3 0.11
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (20 bp):
TTTTTAAATTTTAAAAAATA
Found at i:51527101 original size:8 final size:8
Alignment explanation
Indices: 51527090--51527140 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
51527080 AAAGTTTAAA
51527090 AAAATTAT
1 AAAATTAT
51527098 AAAATTAT
1 AAAATTAT
51527106 AAAATT-T
1 AAAATTAT
*
51527113 ATAATTAT
1 AAAATTAT
*
51527121 AAACTT-T
1 AAAATTAT
51527128 AAAAATTA-
1 -AAAATTAT
51527136 AAAAT
1 AAAAT
51527141 AATATATAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
7 12 0.33
8 24 0.67
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (8 bp):
AAAATTAT
Found at i:51527120 original size:15 final size:15
Alignment explanation
Indices: 51527090--51527140 Score: 59
Period size: 15 Copynumber: 3.3 Consensus size: 15
51527080 AAAGTTTAAA
51527090 AAAATTATAAAATTAT
1 AAAATT-TAAAATTAT
*
51527106 AAAATTTATAATTAT
1 AAAATTTAAAATTAT
*
51527121 AAACTTTAAAAATTA-
1 AAAATTT-AAAATTAT
51527136 AAAAT
1 AAAAT
51527141 AATATATAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 18 0.60
16 12 0.40
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (15 bp):
AAAATTTAAAATTAT
Found at i:51527150 original size:20 final size:19
Alignment explanation
Indices: 51527127--51527173 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 19
51527117 TTATAAACTT
51527127 TAAAAATT-AAAAATAATATA
1 TAAAAATTGAAAAAT-AT-TA
* *
51527147 TAAAATTTGAAAAATGTTA
1 TAAAAATTGAAAAATATTA
51527166 TAAAAATT
1 TAAAAATT
51527174 TTAAAAAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 9 0.39
20 8 0.35
21 6 0.26
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (19 bp):
TAAAAATTGAAAAATATTA
Found at i:51527161 original size:21 final size:20
Alignment explanation
Indices: 51527127--51527180 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
51527117 TTATAAACTT
*
51527127 TAAAAATTAAAAATAATATA
1 TAAAATTTAAAAATAATATA
**
51527147 TAAAATTTGAAAAATGTTATA
1 TAAAATTT-AAAAATAATATA
51527168 -AAAATTTTAAAAA
1 TAAAA-TTTAAAAA
51527181 AGTATCTTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
TAAAATTTAAAAATAATATA
Found at i:51527257 original size:19 final size:19
Alignment explanation
Indices: 51527229--51527268 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
51527219 TTGAAAGAAA
*
51527229 TTAC-ATTTTTTTATAATTT
1 TTACAATTTTTTTA-CATTT
51527248 TTACAATTTTTTTACATTT
1 TTACAATTTTTTTACATTT
51527267 TT
1 TT
51527269 GTAATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.25, C:0.07, G:0.00, T:0.68
Consensus pattern (19 bp):
TTACAATTTTTTTACATTT
Found at i:51527390 original size:19 final size:19
Alignment explanation
Indices: 51527368--51527415 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
51527358 AAGATTTAAA
*
51527368 TATATTTTTCTAAATTTTT
1 TATATTTTTATAAATTTTT
* ***
51527387 TATATATTTATTTCTTTTT
1 TATATTTTTATAAATTTTT
51527406 TATATTTTTA
1 TATATTTTTA
51527416 ATATGTATAT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (19 bp):
TATATTTTTATAAATTTTT
Found at i:51545261 original size:19 final size:19
Alignment explanation
Indices: 51545220--51545271 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
51545210 ATAGCGCATA
* *
51545220 AAGTGCATATTGGCATACG
1 AAGTGCATACTGGCACACG
* *
51545239 AAGTGCATCCTGGCACACT
1 AAGTGCATACTGGCACACG
*
51545258 AAGTGTATACTGGC
1 AAGTGCATACTGGC
51545272 GCACAAAGCA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (19 bp):
AAGTGCATACTGGCACACG
Found at i:51549633 original size:19 final size:18
Alignment explanation
Indices: 51549598--51549648 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
51549588 AAATGTAATC
* *
51549598 AAAT-ATAATAATGATAA
1 AAATAATAATAGTAATAA
*
51549615 CAATAATAAATAGTAATAA
1 AAATAAT-AATAGTAATAA
51549634 AAATAATAATAGTAA
1 AAATAATAATAGTAA
51549649 ATTAATTAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
17 3 0.11
18 10 0.36
19 15 0.54
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (18 bp):
AAATAATAATAGTAATAA
Found at i:51549639 original size:25 final size:24
Alignment explanation
Indices: 51549593--51549654 Score: 63
Period size: 25 Copynumber: 2.5 Consensus size: 24
51549583 AATAGAAATG
**
51549593 TAATCAAATATAATAATGATAACAA
1 TAAT-AAATATAATAAAAATAACAA
*
51549618 TAATAAATAGTAATAAAAATAATAA
1 TAATAAATA-TAATAAAAATAACAA
*
51549643 TAGTAAAT-TAAT
1 TAATAAATATAAT
51549655 TAATAGCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
23 4 0.12
24 5 0.16
25 23 0.72
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (24 bp):
TAATAAATATAATAAAAATAACAA
Found at i:51554308 original size:31 final size:31
Alignment explanation
Indices: 51554273--51554349 Score: 81
Period size: 29 Copynumber: 2.5 Consensus size: 31
51554263 TTAATGACTC
*
51554273 AGTGACTAAAATGTTACAACATGTT-AATATA
1 AGTGACTAAAATGTTACAACAT-TTAAACATA
* *
51554304 AGTGACAAAAATG-T--AATATTTCAAACATA
1 AGTGACTAAAATGTTACAACATTT-AAACATA
51554333 AGTGACTAAAATGTTAC
1 AGTGACTAAAATGTTAC
51554350 CTGAGGTAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
27 2 0.05
28 4 0.11
29 17 0.46
30 2 0.05
31 12 0.32
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (31 bp):
AGTGACTAAAATGTTACAACATTTAAACATA
Found at i:51555402 original size:34 final size:34
Alignment explanation
Indices: 51555364--51555435 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
51555354 TTAGGGCTCA
*
51555364 ATTTCCTCGAAAAATCCCGAATATCGAATATTGC
1 ATTTCCTCGAAAAATCCCGAACATCGAATATTGC
51555398 ATTTCCTCGAAAAATCCCGAACATCGAATATTGC
1 ATTTCCTCGAAAAATCCCGAACATCGAATATTGC
51555432 ATTT
1 ATTT
51555436 ATTTTAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.31
Consensus pattern (34 bp):
ATTTCCTCGAAAAATCCCGAACATCGAATATTGC
Found at i:51556007 original size:3 final size:3
Alignment explanation
Indices: 51555999--51556059 Score: 52
Period size: 3 Copynumber: 19.3 Consensus size: 3
51555989 ATATATAGGT
* * *
51555999 ATA ATA ATA TTA ATA TTTA AT- ATA ATA ATAA ATA ATA CTA ATA ATA
1 ATA ATA ATA ATA ATA -ATA ATA ATA ATA AT-A ATA ATA ATA ATA ATA
51556045 ATA CAGTA ATA ATA A
1 ATA -A-TA ATA ATA A
51556060 CAATTTAACA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
2 2 0.04
3 36 0.77
4 7 0.15
5 2 0.04
ACGTcount: A:0.59, C:0.03, G:0.02, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:51556042 original size:16 final size:15
Alignment explanation
Indices: 51556016--51556045 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
51556006 TATTAATATT
51556016 TAATATAATAATAAA
1 TAATATAATAATAAA
51556031 TAATACTAATAATAA
1 TAATA-TAATAATAA
51556046 TACAGTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATATAATAATAAA
Found at i:51557125 original size:24 final size:24
Alignment explanation
Indices: 51557072--51557125 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
51557062 TTCTAATTAA
* **
51557072 ATTTTATAAATAATTATTATTTAT
1 ATTTTAAAAATAATTAAAATTTAT
*
51557096 -TGTTTAAAAATATTTAAAATTTAT
1 AT-TTTAAAAATAATTAAAATTTAT
51557120 ATTTTA
1 ATTTTA
51557126 TATATTAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
23 1 0.04
24 22 0.92
25 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (24 bp):
ATTTTAAAAATAATTAAAATTTAT
Found at i:51558024 original size:23 final size:24
Alignment explanation
Indices: 51557970--51558021 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
51557960 TCTAAATTTA
* * *
51557970 TAATTCCTTCAAAAATTATAAGTT
1 TAATTCCTTCAAAAATGAAAAGGT
*
51557994 TAATTCCTTTAAAAATGAAAAGGT
1 TAATTCCTTCAAAAATGAAAAGGT
51558018 TAAT
1 TAAT
51558022 CCTAAAAGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (24 bp):
TAATTCCTTCAAAAATGAAAAGGT
Found at i:51559303 original size:9 final size:9
Alignment explanation
Indices: 51559289--51559338 Score: 55
Period size: 9 Copynumber: 5.6 Consensus size: 9
51559279 TTTGGTTAAA
*
51559289 AATTAACCT
1 AATTAACCG
*
51559298 AATTAATCG
1 AATTAACCG
51559307 AATTAACCG
1 AATTAACCG
*
51559316 AATTACCCG
1 AATTAACCG
* *
51559325 GATTAATCG
1 AATTAACCG
51559334 AATTA
1 AATTA
51559339 CTCGCATTAA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTAACCG
Found at i:51559329 original size:18 final size:18
Alignment explanation
Indices: 51559308--51559349 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
51559298 AATTAATCGA
*
51559308 ATTAACCGAATTACCCGG
1 ATTAACCGAATTACCCGC
* *
51559326 ATTAATCGAATTACTCGC
1 ATTAACCGAATTACCCGC
51559344 ATTAAC
1 ATTAAC
51559350 TGAAAATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.29
Consensus pattern (18 bp):
ATTAACCGAATTACCCGC
Found at i:51560177 original size:26 final size:28
Alignment explanation
Indices: 51560142--51560205 Score: 105
Period size: 28 Copynumber: 2.4 Consensus size: 28
51560132 ATAGAAAATA
51560142 ACCAAAATATTAT-AA-TTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
*
51560168 ATCAAAATATTATAAATTTTTTTTATTT
1 ACCAAAATATTATAAATTTTTTTTATTT
51560196 ACCAAAATAT
1 ACCAAAATAT
51560206 ATTAAAAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
26 12 0.35
27 2 0.06
28 20 0.59
ACGTcount: A:0.42, C:0.08, G:0.00, T:0.50
Consensus pattern (28 bp):
ACCAAAATATTATAAATTTTTTTTATTT
Found at i:51560283 original size:27 final size:26
Alignment explanation
Indices: 51560253--51560338 Score: 100
Period size: 27 Copynumber: 3.2 Consensus size: 26
51560243 GCCTGATCAA
* * *
51560253 GCCAATCACATTGGCAGCACCAAAGGT
1 GCCAAT-AGATTGGCGGCACCAATGGT
*
51560280 GCCAATGTGATTGGCGGCACCAATGGT
1 GCCAAT-AGATTGGCGGCACCAATGGT
*
51560307 GCTAATATGATTGGCGGCACCAATGGT
1 GCCAATA-GATTGGCGGCACCAATGGT
51560334 GCCAA
1 GCCAA
51560339 AGGACTAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.20
Consensus pattern (26 bp):
GCCAATAGATTGGCGGCACCAATGGT
Found at i:51560666 original size:19 final size:19
Alignment explanation
Indices: 51560642--51560707 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
51560632 ATTAAAATAG
51560642 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
51560661 TTTAATGTAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
* *
51560679 TCTCATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
51560698 TTTAATTTAA
1 TTTAATTTAA
51560708 AAAAATTAAA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.38, C:0.11, G:0.02, T:0.50
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:51560955 original size:19 final size:19
Alignment explanation
Indices: 51560933--51560998 Score: 89
Period size: 19 Copynumber: 3.5 Consensus size: 19
51560923 ATTTTATATT
51560933 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
51560952 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
*
51560970 TTACATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
51560989 TTAAATTAAA
1 TTAAATTAAA
51560999 CTATTTTAAT
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
18 14 0.37
19 24 0.63
ACGTcount: A:0.50, C:0.02, G:0.11, T:0.38
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:51561205 original size:276 final size:276
Alignment explanation
Indices: 51560712--51561270 Score: 1082
Period size: 276 Copynumber: 2.0 Consensus size: 276
51560702 ATTTAAAAAA
51560712 ATTAAATTAAACTATTTTAATTTTATAAATTTAATATATTCCCTTAACTAATATTAAATCAAAAG
1 ATTAAATTAAACTATTTTAATTTTATAAATTTAATATATTCCCTTAACTAATATTAAATCAAAAG
51560777 GAAAAAAATAACGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACT
66 GAAAAAAATAACGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACT
51560842 TATAACATAAACATGTTAGACTATTTTAATTAAAATAGTCTCTTAAGATATTATGAAGCAACAAA
131 TATAACATAAACATGTTAGACTATTTTAATTAAAATAGTCTCTTAAGATATTATGAAGCAACAAA
*
51560907 TTTTATATTTCAGTAAATTTTATATTTTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTATT
196 TTTTATATTTCAGTAAATTTTATATTTTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTATT
*
51560972 ACATTAAAATAGAGTT
261 AAATTAAAATAGAGTT
51560988 ATTAAATTAAACTATTTTAATTTTATAAATTTAATATATTCCCTTAACTAATATTAAATCAAAAG
1 ATTAAATTAAACTATTTTAATTTTATAAATTTAATATATTCCCTTAACTAATATTAAATCAAAAG
*
51561053 GAAAAAAATAATGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACT
66 GAAAAAAATAACGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACT
51561118 TATAACATAAACATGTTAGACTATTTTAATTAAAATAGTCTCTTAAGATATTATGAAGCAACAAA
131 TATAACATAAACATGTTAGACTATTTTAATTAAAATAGTCTCTTAAGATATTATGAAGCAACAAA
*
51561183 TTTTTTATTTCAGTAAATTTTATATTTTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTATT
196 TTTTATATTTCAGTAAATTTTATATTTTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTATT
51561248 AAATTAAAATAGAGTT
261 AAATTAAAATAGAGTT
51561264 ATTAAAT
1 ATTAAAT
51561271 GAGAATAGTT
Statistics
Matches: 279, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
276 279 1.00
ACGTcount: A:0.45, C:0.07, G:0.07, T:0.40
Consensus pattern (276 bp):
ATTAAATTAAACTATTTTAATTTTATAAATTTAATATATTCCCTTAACTAATATTAAATCAAAAG
GAAAAAAATAACGGAAACATAAACTATTTTATCTATTTATAAATTTAATATATTCTTAATAGACT
TATAACATAAACATGTTAGACTATTTTAATTAAAATAGTCTCTTAAGATATTATGAAGCAACAAA
TTTTATATTTCAGTAAATTTTATATTTTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTATT
AAATTAAAATAGAGTT
Found at i:51561248 original size:18 final size:19
Alignment explanation
Indices: 51561209--51561304 Score: 124
Period size: 19 Copynumber: 5.2 Consensus size: 19
51561199 ATTTTATATT
51561209 TTAAATGAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
51561228 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
51561246 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
* *
51561265 TTAAATGAGAATAG-TTTA
1 TTAAATGAAAATAGAGTTA
*
51561283 TTAAATTAAAATAGAGTTA
1 TTAAATGAAAATAGAGTTA
51561302 TTA
1 TTA
51561305 CTTAATTAGA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
18 30 0.47
19 34 0.53
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.38
Consensus pattern (19 bp):
TTAAATGAAAATAGAGTTA
Found at i:51561250 original size:37 final size:37
Alignment explanation
Indices: 51561209--51561304 Score: 183
Period size: 37 Copynumber: 2.6 Consensus size: 37
51561199 ATTTTATATT
*
51561209 TTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
51561246 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
51561283 TTAAATTAAAATAGAGTTATTA
1 TTAAATTAAAATAGAGTTATTA
51561305 CTTAATTAGA
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
37 58 1.00
ACGTcount: A:0.49, C:0.00, G:0.14, T:0.38
Consensus pattern (37 bp):
TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
Found at i:51561981 original size:27 final size:28
Alignment explanation
Indices: 51561928--51561992 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 28
51561918 TTTTTTTTTT
51561928 ATATTTTGATAAATAAAAAAAAATTATA
1 ATATTTTGATAAATAAAAAAAAATTATA
*
51561956 ATATTTTGATAAAT-AAAAAAATTTATA
1 ATATTTTGATAAATAAAAAAAAATTATA
51561983 ATATTTTGAT
1 ATATTTTGAT
51561993 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
27 22 0.61
28 14 0.39
ACGTcount: A:0.54, C:0.00, G:0.05, T:0.42
Consensus pattern (28 bp):
ATATTTTGATAAATAAAAAAAAATTATA
Found at i:51567406 original size:30 final size:30
Alignment explanation
Indices: 51567347--51567406 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
51567337 AAAATAAGAG
**
51567347 TTAGTGGCAAAAATTAATAAAATTTAAATT
1 TTAGTGGCAAAAATTAATAAAATAAAAATT
* * *
51567377 TTAGTGGTAAAATTTAATAACATAAAAATT
1 TTAGTGGCAAAAATTAATAAAATAAAAATT
51567407 AAGTTACAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.50, C:0.03, G:0.10, T:0.37
Consensus pattern (30 bp):
TTAGTGGCAAAAATTAATAAAATAAAAATT
Found at i:51567830 original size:26 final size:26
Alignment explanation
Indices: 51567799--51567954 Score: 92
Period size: 26 Copynumber: 6.1 Consensus size: 26
51567789 ATATATATTT
51567799 TATTAAATTATATTTAATAATAATTA
1 TATTAAATTATATTTAATAATAATTA
* * *
51567825 TGTTAAATTATATTTTATAGT-ATTA
1 TATTAAATTATATTTAATAATAATTA
* *
51567850 TA-T--ATTATGATTTTAGAA-AATTCA
1 TATTAAATTAT-ATTTAATAATAATT-A
* * * * * *
51567874 TATAAGAAATTTTA-ATATTAAGAATTT
1 TAT--TAAATTATATTTAATAATAATTA
*
51567901 TATTAAATTATACTTAATAATAATTA
1 TATTAAATTATATTTAATAATAATTA
* * *
51567927 TGTTAAATTATATTTTATAGT-ATTA
1 TATTAAATTATATTTAATAATAATTA
51567952 TAT
1 TAT
51567955 ATTATGATTT
Statistics
Matches: 96, Mismatches: 24, Indels: 21
0.68 0.17 0.15
Matches are distributed among these distances:
22 5 0.05
23 10 0.10
24 4 0.04
25 18 0.19
26 44 0.46
27 6 0.06
28 5 0.05
29 4 0.04
ACGTcount: A:0.44, C:0.01, G:0.05, T:0.50
Consensus pattern (26 bp):
TATTAAATTATATTTAATAATAATTA
Found at i:51567907 original size:102 final size:102
Alignment explanation
Indices: 51567795--51568133 Score: 428
Period size: 102 Copynumber: 3.1 Consensus size: 102
51567785 GAAAATATAT
51567795 ATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
1 ATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
51567860 TTTTAGAAAATTCATATAAGAA-ATTTTAATATTAAGA
66 TTTTAGAAAATTCATATAAGAATA-TTTAATATTAAGA
*
51567897 ATTTTATTAAATTATACTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
1 ATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
51567962 TTTTAGAAAATTCATATAAGAATATTTAATATTAAGA
66 TTTTAGAAAATTCATATAAGAATATTTAATATTAAGA
*
51567999 ATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTATTTCAAATTATATTTTA
1 ATTTTATTAAAT--TATA---T--TT--AATA-A--T-A-ATT-A-T-GTT-AAATTATATTTTA
* * * * * *
51568064 TAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAATA
48 TAGTATTATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGA
51568119 ATTTTATTAAATTAT
1 ATTTTATTAAATTAT
51568134 CTATTTTAAT
Statistics
Matches: 209, Mismatches: 9, Indels: 22
0.87 0.04 0.09
Matches are distributed among these distances:
102 111 0.53
103 1 0.00
104 4 0.02
109 2 0.01
111 4 0.02
112 1 0.00
114 1 0.00
115 1 0.00
116 3 0.01
117 1 0.00
118 4 0.02
119 2 0.01
120 74 0.35
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.49
Consensus pattern (102 bp):
ATTTTATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATGA
TTTTAGAAAATTCATATAAGAATATTTAATATTAAGA
Found at i:51568047 original size:120 final size:120
Alignment explanation
Indices: 51567897--51568173 Score: 432
Period size: 120 Copynumber: 2.3 Consensus size: 120
51567887 AATATTAAGA
* * *
51567897 ATTTT-ATTAAATTATACTTAATAATAATTATGTTAAATTATATTTTATAGTATTATATATTATG
1 ATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATG
* *
51567961 ATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATCATAT
66 ATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAATCATAT
*
51568016 ATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTATCATATATTAT
1 ATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTATCATATATTAT
* * * * *
51568080 GATTTGAGTAAATTCATATAAGAATATTGATTATTAATAATTTTATTAAATTATCT
65 GATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAATCATAT
51568136 ATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 ATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
51568174 ATATGATTAA
Statistics
Matches: 143, Mismatches: 12, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
119 7 0.05
120 134 0.94
121 2 0.01
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
ATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATCATATATTATG
ATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTATTAAATCATAT
Found at i:51568373 original size:44 final size:45
Alignment explanation
Indices: 51568310--51568407 Score: 137
Period size: 45 Copynumber: 2.2 Consensus size: 45
51568300 CTATTACACC
*
51568310 TCCATTCCATTCAACCAAACACA-AGA-ATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACA-ATAGATATACTATTACGCCTCTAT
* * *
51568354 TCCATTACATTCAACCAAACAATTGATTTGCTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
51568399 TCCATTACA
1 TCCATTACA
51568408 ACGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
43 1 0.02
44 22 0.46
45 25 0.52
ACGTcount: A:0.34, C:0.30, G:0.05, T:0.32
Consensus pattern (45 bp):
TCCATTACATTCAACCAAACAATAGATATACTATTACGCCTCTAT
Found at i:51573555 original size:40 final size:41
Alignment explanation
Indices: 51573511--51573610 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 41
51573501 AATGAAGCAC
51573511 TTTGTCCACGTGGACAAAAAACACTT-CTTCAAGAAAGCG-T
1 TTTGTCCACGTGGACAAAAAACACTTCCTT-AAGAAAGCGTT
* * * * **
51573551 TTTGTCCACGTGGATAGAAAACGCTTCCTTGAGGGAGCGTT
1 TTTGTCCACGTGGACAAAAAACACTTCCTTAAGAAAGCGTT
51573592 TTGTGTCCACGTGGACAAA
1 TT-TGTCCACGTGGACAAA
51573611 GTGCTTCCAT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
40 29 0.59
41 6 0.12
42 14 0.29
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (41 bp):
TTTGTCCACGTGGACAAAAAACACTTCCTTAAGAAAGCGTT
Found at i:51574529 original size:96 final size:95
Alignment explanation
Indices: 51574425--51574712 Score: 391
Period size: 97 Copynumber: 3.0 Consensus size: 95
51574415 AACAACTAGT
* *
51574425 TTTATTTGATTTTTCCTTAAAAACCCTAAATACTAAACCCCAATCTAATTTTTTTAAAATTTATA
1 TTTATTTGATTTTTCCTTAAAAACCCTAAA-ACTAAACCCTAATCTAATTTTTTAAAAATTTATA
* *
51574490 ATTAATTTACTCAAATAACCCTACACCCTAA
65 ATTAATTTACTCAAATAAACCTAAACCCTAA
* *
51574521 TTTATTTGATTTTTTCCTTAAAAATCCTAAACACTAAACCCTAATATAATTTTTTAAAAATTTAT
1 TTTATTTGA-TTTTTCCTTAAAAACCCTAAA-ACTAAACCCTAATCTAATTTTTTAAAAATTTAT
*
51574586 AATTAATTTACTCAAGTAAACCTAAACCCTAA
64 AATTAATTTACTCAAATAAACCTAAACCCTAA
* * * *
51574618 TTTATTTAATTTTTCCTTAAAAACCATAAAATCTAAACTCTAATCTAA-TTTTTAAAAATTTATC
1 TTTATTTGATTTTTCCTTAAAAACCCTAAAA-CTAAACCCTAATCTAATTTTTTAAAAATTTATA
* * *
51574682 ATTAATTTAAT-TAAGAAACCTTAAACCCTAA
65 ATTAATTTACTCAAATAAACC-TAAACCCTAA
51574713 ACCCTTATTT
Statistics
Matches: 171, Mismatches: 18, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
94 6 0.04
95 36 0.21
96 42 0.25
97 87 0.51
ACGTcount: A:0.41, C:0.17, G:0.01, T:0.40
Consensus pattern (95 bp):
TTTATTTGATTTTTCCTTAAAAACCCTAAAACTAAACCCTAATCTAATTTTTTAAAAATTTATAA
TTAATTTACTCAAATAAACCTAAACCCTAA
Found at i:51580392 original size:12 final size:12
Alignment explanation
Indices: 51580375--51580400 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51580365 CTATTATTTG
51580375 TTAAACTTATTA
1 TTAAACTTATTA
51580387 TTAAACTTATTA
1 TTAAACTTATTA
51580399 TT
1 TT
51580401 TGTTGAACGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (12 bp):
TTAAACTTATTA
Found at i:51587089 original size:20 final size:21
Alignment explanation
Indices: 51587051--51587089 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
51587041 CAAAGTTTTA
* *
51587051 TTTTAAAAATCATTTTCAAAT
1 TTTTAAAAATAATTATCAAAT
51587072 TTTTAAAAA-AATTATCAA
1 TTTTAAAAATAATTATCAA
51587090 TTAGATTTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.49, C:0.08, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTTAAAAATAATTATCAAAT
Found at i:51599936 original size:213 final size:213
Alignment explanation
Indices: 51599545--51600596 Score: 1070
Period size: 211 Copynumber: 5.0 Consensus size: 213
51599535 CTAATATAAT
* * *
51599545 ATGAGCATAATACTTACTTCATCGGAGGATGAATCTTCCTCACTACTAGACTCTGAACTACTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * * **
51599610 AGCTTTCACTGTCTTAGCAACTGGTATAGAGCCACTTTTAGCAACTACGGGTTTTTTCTTCTGAA
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTG
* * *
51599675 CAGAAGCTTCCTGGAATAAAACAGACA-ATTGAACATTAACAATCATGCAAAAGAATATTCCCAA
131 CAGGAGCTTCCTGGGATAAAACA-AAATATTGAACATTAACAATCATGCAAAAGAATATTCCCAA
51599739 CCATGCTAATATTATAAGC
195 CCATGCTAATATTATAAGC
* * * * *
51599758 ATGAGTATAATAGTCACTTCGTCAGAGGATGAACCCTCCTCACTACTAGACTCAGAACTACTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * ** *** *
51599823 AGCTTTCACAGTCTTAGCATCTGGAACAGATACACTTTTAGTGGCTACAGATTTTTTATTCTGTG
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTG
* * * *
51599888 CAGGAGCTTCCTGGGATAAGACAAAATATTGAACATCAACAATCATGCAAAAGAACACTCCCAAC
131 CAGGAGCTTCCTGGGATAAAACAAAATATTGAACATTAACAATCATGCAAAAGAATATTCCCAAC
* * *
51599953 CATACTCAA-AATATAACC
196 CATGCT-AATATTATAAGC
* * * *
51599971 AT--GCATATTACTCACTTCATCAGAGGATGAGTCTTCTTCGCTACTAGACTCAGAACTACTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * * * * *
51600034 AGCTTTAACAGCCTTAGCAGCCGGAATAGAGCCAGGTTTT-GCAGCTACAGGTTTTTTATTCTGA
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCA-CTTTTAGCAACTACAGGTTTTTTATTCTGT
* * * * **
51600098 GCAGGAGCTTCCT--GA-AAAAAAAAACAATTGAACATTAACAATTATACAAAAGAA-GGT-CCA
130 GCAGGAGCTTCCTGGGATAAAACAAAA-TATTGAACATTAACAATCATGCAAAAGAATATTCCCA
** * *
51600158 ATTATGCGAACGTTTTA-ACTAGC
194 ACCATGCTAA--TATTATA--AGC
* * *
51600181 AAGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTTGA---AGAACTGCTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * ** * *
51600243 AGCTTTCAGTGTCTTGGCAGCTGGAACAGAGCCTTTTTTAGCAACTACAGGGTTTTTCTTCT-TA
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGT-
* * **
51600307 GCAGGAGCTTCCT-GGATAAAACAAAATATTGAACATCAAAAATCATAG-AAAAGAATATAACCA
130 GCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATTAACAATCAT-GCAAAAGAATATTCCCA
*
51600370 ACCATGCT-ATATTACAAGC
194 ACCATGCTAATATTATAAGC
* * *
51600389 ATGAGCATGATACTCACTTCGTCAGAGGATGAATCTTCCTCACTGCTAGACTCAGAACTACTATC
1 ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * *
51600454 AGCTTTCACTGTCTTGGCAGCTGGAACAGGGCCATTTTTAGAAACTACAGGTTTTTTATTC--TG
66 AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTG
* * * * *
51600517 -AGGAGCTTCCTGGAATATTAAA-AAAATATTTGAACATTAACGATCATAC-AAAGAATACATCT
131 CAGGAGCTTCCTGGGATA--AAACAAAATA-TTGAACATTAACAATCATGCAAAAGAATA-TTCC
**
51600579 TGACCATGCTAATATTAT
192 CAACCATGCTAATATTAT
51600597 GATGCCCCTA
Statistics
Matches: 685, Mismatches: 125, Indels: 59
0.79 0.14 0.07
Matches are distributed among these distances:
206 2 0.00
207 7 0.01
208 72 0.11
209 107 0.16
210 44 0.06
211 213 0.31
212 61 0.09
213 177 0.26
214 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (213 bp):
ATGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
AGCTTTCACTGTCTTAGCAGCTGGAACAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGTG
CAGGAGCTTCCTGGGATAAAACAAAATATTGAACATTAACAATCATGCAAAAGAATATTCCCAAC
CATGCTAATATTATAAGC
Found at i:51600440 original size:420 final size:423
Alignment explanation
Indices: 51599545--51600573 Score: 1176
Period size: 420 Copynumber: 2.4 Consensus size: 423
51599535 CTAATATAAT
* * *
51599545 ATGAGCATAATACTTACTTCATCGGAGGATGAATCTTCCTCACTACTAGACTCTGAACTACTATC
1 ATGAGCAT-ATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * *
51599610 AGCTTTCACTGTCTTAGCAACTGGTATAGAGCCACTTTTAGCAACTACGGGTTTTTTCTTCTGAA
65 AGCTTTCACTGTCTTAGCAGCTGGAATAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGAG
* * * * *
51599675 CAGAAGCTTCCTGGAATAAAACAGACAATTGAACATTAACAATCATGCAAAAGAATATTCCCAAC
130 CAGGAGCTTCCTGGAATAAAAAAAACAATTGAACATTAACAATCATACAAAAGAATAGTCCCAAC
* * * * *
51599740 CATGCTAATATTATAAGCATGAGTATAATAGTCACTTCGTCAGAGGATGAACCCTCCTCACTACT
195 CATGCGAATATTATAAGCAAGAGCATAATACTCACTTCATCAGAGGATGAACCCTCCTCACTACT
* * ***
51599805 AGACTCAGAACTACTATCAGCTTTCACAGTCTTAGCATCTGGAACAGATACACTTTTAGTGGCTA
260 AGA--CAGAACTACTATCAGCTTTCACAGTCTTAGCAGCTGGAACAGAGACACTTTTAGCAACTA
* * *
51599870 CAGATTTTTTATTCTGTGCAGGAGCTTCCTGGGATAAGACAAAATATTGAACATCAACAATCATG
323 CAGAGTTTTTATTCTGTGCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATCAAAAATCATG
* *
51599935 CAAAAGAACACTCCCAACCATACTCAAAATATAACC
388 CAAAAGAACACTACCAACCATACTCAAAATACAACC
* * *
51599971 AT--GCATATTACTCACTTCATCAGAGGATGAGTCTTCTTCGCTACTAGACTCAGAACTACTATC
1 ATGAGCATA-TACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * * *
51600034 AGCTTTAACAGCCTTAGCAGCCGGAATAGAGCCAGGTTTT-GCAGCTACAGGTTTTTTATTCTGA
65 AGCTTTCACTGTCTTAGCAGCTGGAATAGAGCCA-CTTTTAGCAACTACAGGTTTTTTATTCTGA
* *
51600098 GCAGGAGCTTCCT-GAA-AAAAAAAACAATTGAACATTAACAATTATACAAAAGAA-GGT-CCAA
129 GCAGGAGCTTCCTGGAATAAAAAAAACAATTGAACATTAACAATCATACAAAAGAATAGTCCCAA
** * * *
51600159 TTATGCGAACGTTTTA-ACTAGCAAGAGCATAATACTCACTTCATCAGAGGATGAATCTTCCTCA
194 CCATGCGAA--TATTATA--AGCAAGAGCATAATACTCACTTCATCAGAGGATGAACCCTCCTCA
* * ** * * **
51600223 CTACTTGA-AGAACTGCTATCAGCTTTCAGTGTCTTGGCAGCTGGAACAGAGCCTTTTTTAGCAA
255 CTACTAGACAGAACTACTATCAGCTTTCACAGTCTTAGCAGCTGGAACAGAGACACTTTTAGCAA
* *
51600287 CTACAGGGTTTTTCTTCT-TAGCAGGAGCTTCCT-GGATAAAACAAAATATTGAACATCAAAAAT
320 CTACAGAGTTTTTATTCTGT-GCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATCAAAAAT
* * * * *
51600350 CATAG-AAAAGAATA-TAACCAACCATGCT-ATATTACAAGC
384 CAT-GCAAAAGAACACT-ACCAACCATACTCAAAATACAACC
* *
51600389 ATGAGCATGATACTCACTTCGTCAGAGGATGAATCTTCCTCACTGCTAGACTCAGAACTACTATC
1 ATGAGCAT-ATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATC
* * * * *
51600454 AGCTTTCACTGTCTTGGCAGCTGGAACAGGGCCATTTTTAGAAACTACAGGTTTTTTATTCT--G
65 AGCTTTCACTGTCTTAGCAGCTGGAATAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGAG
* * *
51600517 -AGGAGCTTCCTGGAATATTAAAAAAATATTTGAACATTAACGATCATAC-AAAGAATA
130 CAGGAGCTTCCTGGAATA--AAAAAAACAATTGAACATTAACAATCATACAAAAGAATA
51600574 CATCTTGACC
Statistics
Matches: 506, Mismatches: 79, Indels: 41
0.81 0.13 0.07
Matches are distributed among these distances:
417 11 0.02
418 14 0.03
419 55 0.11
420 190 0.38
421 29 0.06
422 38 0.08
423 50 0.10
424 113 0.22
425 4 0.01
426 2 0.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.28
Consensus pattern (423 bp):
ATGAGCATATACTCACTTCATCAGAGGATGAATCTTCCTCACTACTAGACTCAGAACTACTATCA
GCTTTCACTGTCTTAGCAGCTGGAATAGAGCCACTTTTAGCAACTACAGGTTTTTTATTCTGAGC
AGGAGCTTCCTGGAATAAAAAAAACAATTGAACATTAACAATCATACAAAAGAATAGTCCCAACC
ATGCGAATATTATAAGCAAGAGCATAATACTCACTTCATCAGAGGATGAACCCTCCTCACTACTA
GACAGAACTACTATCAGCTTTCACAGTCTTAGCAGCTGGAACAGAGACACTTTTAGCAACTACAG
AGTTTTTATTCTGTGCAGGAGCTTCCTGGGATAAAACAAAATATTGAACATCAAAAATCATGCAA
AAGAACACTACCAACCATACTCAAAATACAACC
Found at i:51602202 original size:16 final size:15
Alignment explanation
Indices: 51602171--51602209 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
51602161 TATATGTTAT
*
51602171 TATATTTTATGTATA
1 TATATTTTAAGTATA
51602186 TATATTTTGAAGTATA
1 TATATTTT-AAGTATA
51602202 TATTATTT
1 TA-TATTT
51602210 ATCGTGTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.38
16 8 0.38
17 5 0.24
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.59
Consensus pattern (15 bp):
TATATTTTAAGTATA
Found at i:51606950 original size:27 final size:27
Alignment explanation
Indices: 51606885--51607204 Score: 256
Period size: 27 Copynumber: 11.9 Consensus size: 27
51606875 GGGTATAAAA
* * *
51606885 GTCATTTTACACTAT-GAGG-GTTTCA
1 GTCATTTTACCCTATGGAGGTATTTCG
* *
51606910 GTCATTTTAACCTATGGAAGTATTTCG
1 GTCATTTTACCCTATGGAGGTATTTCG
* * **
51606937 GTCATTCTACCCTATGGGGGTATTTTA
1 GTCATTTTACCCTATGGAGGTATTTCG
* *
51606964 GTCATTTTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGAGGTATTTCG
* **
51606991 ATCATTTTACCCTAT-GAGGGTATTTTA
1 GTCATTTTACCCTATGGA-GGTATTTCG
* *
51607018 GTTATTTTACCCTAT-AAGGGTATTTCG
1 GTCATTTTACCCTATGGA-GGTATTTCG
* *
51607045 GTCATTTTACCTTAT-GAGGGTATTTCA
1 GTCATTTTACCCTATGGA-GGTATTTCG
* *
51607072 GTTATTTTACCCTAT-GAGGGTATTTTG
1 GTCATTTTACCCTATGGA-GGTATTTCG
* * *
51607099 GTCATTCTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGAGGTATTTCG
* * *
51607126 ATTATTTTACTCTATGGAGGTATTTCG
1 GTCATTTTACCCTATGGAGGTATTTCG
* * * *
51607153 GCCATTCTATCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGAGGTATTTCG
* * * *
51607180 ATAATTTTATCCTATGAAGGTATTT
1 GTCATTTTACCCTATGGAGGTATTT
51607205 TGGTTATAAC
Statistics
Matches: 234, Mismatches: 57, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
25 13 0.06
26 4 0.02
27 216 0.92
28 1 0.00
ACGTcount: A:0.21, C:0.15, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATGGAGGTATTTCG
Found at i:51611633 original size:22 final size:22
Alignment explanation
Indices: 51611604--51611647 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
51611594 ACCAAATTTA
*
51611604 ATATTACAATTTATAT-ATATT
1 ATATTACAATTTAAATAATATT
51611625 ATATATACAATTTAAATAATATT
1 ATAT-TACAATTTAAATAATATT
51611648 TTAATAACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 4 0.20
22 11 0.55
23 5 0.25
ACGTcount: A:0.48, C:0.05, G:0.00, T:0.48
Consensus pattern (22 bp):
ATATTACAATTTAAATAATATT
Found at i:51620168 original size:27 final size:27
Alignment explanation
Indices: 51620150--51620199 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 27
51620140 ATATTATTAA
51620150 TATAATATA-TAA-ATGTTATAATAAG
1 TATAATATATTAATATGTTATAATAAG
51620175 TATAATATATTAATATGTTA-AATAA
1 TATAATATATTAATATGTTATAATAA
51620200 ACATTAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.39
26 8 0.35
27 6 0.26
ACGTcount: A:0.52, C:0.00, G:0.06, T:0.42
Consensus pattern (27 bp):
TATAATATATTAATATGTTATAATAAG
Found at i:51621218 original size:43 final size:43
Alignment explanation
Indices: 51621103--51621218 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
51621093 TGTGTTTTCG
* * * * * *
51621103 TGTAAGACCACGTCTGGGACGTTGGCATCGATTTGTGTTTACG
1 TGTAAGACCACGTCTGGGATGTTGGCATTGATCTGAGATTACA
*
51621146 TGTAAGACC-CTGTCT-GGAT-TAGCGACATTGATCTGAGATTACA
1 TGTAAGACCAC-GTCTGGGATGTTG-G-CATTGATCTGAGATTACA
51621189 TGTAAGACCACGTCTGGGATGTTGGCATTG
1 TGTAAGACCACGTCTGGGATGTTGGCATTG
51621219 TACGAGCTTT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
41 2 0.03
42 5 0.08
43 44 0.75
44 6 0.10
45 2 0.03
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGATGTTGGCATTGATCTGAGATTACA
Found at i:51628233 original size:41 final size:41
Alignment explanation
Indices: 51628176--51628330 Score: 256
Period size: 41 Copynumber: 3.8 Consensus size: 41
51628166 CCTTTTAGGG
*
51628176 CTTTAGCGGTGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
* * * *
51628217 CTTTAGCAGCATTTTTGAAAAGGCGCCGCTAATGCTCAGGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
*
51628258 CTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
51628299 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
51628331 AAACATTTTA
Statistics
Matches: 103, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 103 1.00
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGGGT
Found at i:51628718 original size:14 final size:15
Alignment explanation
Indices: 51628685--51628729 Score: 67
Period size: 14 Copynumber: 3.1 Consensus size: 15
51628675 TTTTAAGGTA
*
51628685 TAGGGAGTATGGATT
1 TAGGGATTATGGATT
51628700 TAGGGATTATGGA-T
1 TAGGGATTATGGATT
51628714 TAGGGATTATGG-TT
1 TAGGGATTATGGATT
51628728 TA
1 TA
51628730 AGGGTTGGGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.27, C:0.00, G:0.36, T:0.38
Consensus pattern (15 bp):
TAGGGATTATGGATT
Found at i:51629041 original size:14 final size:14
Alignment explanation
Indices: 51629021--51629064 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
51629011 ACAGATTATA
51629021 GTTTAAGGGTT-GG
1 GTTTAAGGGTTAGG
*
51629034 GATTTAAGGTTTAGG
1 G-TTTAAGGGTTAGG
51629049 GTTTAAGGGTCTAGG
1 GTTTAAGGGT-TAGG
51629064 G
1 G
51629065 GTTAGACATT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 1 0.04
14 17 0.65
15 8 0.31
ACGTcount: A:0.20, C:0.02, G:0.41, T:0.36
Consensus pattern (14 bp):
GTTTAAGGGTTAGG
Found at i:51629455 original size:23 final size:23
Alignment explanation
Indices: 51629381--51629459 Score: 95
Period size: 23 Copynumber: 3.3 Consensus size: 23
51629371 TAAATATTAA
51629381 TTTAAATAGAATTAATAAATAAG
1 TTTAAATAGAATTAATAAATAAG
* * *
51629404 TTAAAATAAAATATATTTAAATATTAG
1 TTTAAATAGAAT-TA-ATAAATA--AG
51629431 TTTAAATAGAATTAATAAATAAG
1 TTTAAATAGAATTAATAAATAAG
51629454 TTTAAA
1 TTTAAA
51629460 GAAAATATAT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
23 18 0.39
24 2 0.04
25 12 0.26
26 2 0.04
27 12 0.26
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (23 bp):
TTTAAATAGAATTAATAAATAAG
Found at i:51629478 original size:58 final size:58
Alignment explanation
Indices: 51629416--51629536 Score: 215
Period size: 58 Copynumber: 2.1 Consensus size: 58
51629406 AAAATAAAAT
* *
51629416 ATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAAGAAAATATATTTAA
1 ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAAGAAAATATATTTAA
*
51629474 ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAAATATATTTAA
1 ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAAGAAAATATATTTAA
51629532 ATATT
1 ATATT
51629537 AGTTTAAATA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 60 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (58 bp):
ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAAGAAAATATATTTAA
Found at i:51629493 original size:12 final size:11
Alignment explanation
Indices: 51629476--51629581 Score: 57
Period size: 12 Copynumber: 9.8 Consensus size: 11
51629466 ATATTTAAAT
51629476 ATTTAAATATTA
1 ATTTAAATA-TA
*
51629488 ATTTAAATAGA
1 ATTTAAATATA
*
51629499 A-TTAATAAATA
1 ATTTAA-ATATA
*
51629510 AGTTAAA-AT-
1 ATTTAAATATA
51629519 A---AAATAT-
1 ATTTAAATATA
51629526 ATTTAAATATTA
1 ATTTAAATA-TA
* *
51629538 GTTTAAATAGA
1 ATTTAAATATA
51629549 ATTAATAAATAT-
1 ATT--TAAATATA
51629561 ATTTAAATATTA
1 ATTTAAATA-TA
51629573 ATTTAAATA
1 ATTTAAATA
51629582 AAATAATTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 24
0.71 0.07 0.23
Matches are distributed among these distances:
6 3 0.04
7 3 0.04
9 1 0.01
10 17 0.23
11 12 0.16
12 33 0.44
13 6 0.08
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (11 bp):
ATTTAAATATA
Found at i:51629535 original size:108 final size:108
Alignment explanation
Indices: 51629366--51629567 Score: 388
Period size: 108 Copynumber: 1.9 Consensus size: 108
51629356 ACCATTTGAT
51629366 ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAAATATATTTAAATATTAG
1 ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAAATATATTTAAATATTAG
51629431 TTTAAATAGAATTAATAAATA-AGTTTAAAGAAAATATATTTAA
66 TTTAAATAGAATTAATAAATATA-TTTAAAGAAAATATATTTAA
51629474 ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAAATATATTTAAATATTAG
1 ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAAATATATTTAAATATTAG
51629539 TTTAAATAGAATTAATAAATATATTTAAA
66 TTTAAATAGAATTAATAAATATATTTAAA
51629568 TATTAATTTA
Statistics
Matches: 93, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
108 92 0.99
109 1 0.01
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (108 bp):
ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAAATATATTTAAATATTAG
TTTAAATAGAATTAATAAATATATTTAAAGAAAATATATTTAA
Found at i:51629565 original size:23 final size:25
Alignment explanation
Indices: 51629479--51629569 Score: 100
Period size: 23 Copynumber: 3.7 Consensus size: 25
51629469 TTTAAATATT
*
51629479 TAAATATTAATTTAAATAGAATTAA
1 TAAATATTAGTTTAAATAGAATTAA
* * *
51629504 TAAATA--AGTTAAAATAAAATATATT
1 TAAATATTAGTTTAAATAGAAT-TA-A
51629529 TAAATATTAGTTTAAATAGAATTAA
1 TAAATATTAGTTTAAATAGAATTAA
51629554 TAAATA-TA-TTTAAATA
1 TAAATATTAGTTTAAATA
51629570 TTAATTTAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
23 19 0.35
24 4 0.07
25 18 0.33
26 2 0.04
27 12 0.22
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (25 bp):
TAAATATTAGTTTAAATAGAATTAA
Found at i:51629569 original size:50 final size:50
Alignment explanation
Indices: 51629364--51629559 Score: 293
Period size: 50 Copynumber: 3.8 Consensus size: 50
51629354 AAACCATTTG
51629364 ATATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAA
1 ATATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAA
* *
51629414 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATAAGTTTAAAGAAAATA
1 ATATATTTAAATATTAATTTAAATAGAATTAATAAATAAG-TTAAA-ATAA-A
51629467 TATTTAAATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAA
1 -A--T--ATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAA
*
51629522 ATATATTTAAATATTAGTTTAAATAGAATTAATAAATA
1 ATATATTTAAATATTAATTTAAATAGAATTAATAAATA
51629560 TATTTAAATA
Statistics
Matches: 133, Mismatches: 5, Indels: 16
0.86 0.03 0.10
Matches are distributed among these distances:
50 74 0.56
51 5 0.04
52 4 0.03
53 1 0.01
54 2 0.02
55 1 0.01
56 4 0.03
57 5 0.04
58 37 0.28
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.39
Consensus pattern (50 bp):
ATATATTTAAATATTAATTTAAATAGAATTAATAAATAAGTTAAAATAAA
Found at i:51632016 original size:27 final size:27
Alignment explanation
Indices: 51631921--51632016 Score: 72
Period size: 27 Copynumber: 3.5 Consensus size: 27
51631911 TACTTGTATT
* *
51631921 TAAAATAATAAAACT-TAAAAAAAGTT-
1 TAAAATAATAAAAATATATAAAAA-TTA
* * **
51631947 TAAAACAAATTAAAAATACATAAATTTTA
1 TAAAA-TAA-TAAAAATATATAAAAATTA
*
51631976 TAAAAGAA-ATAAAATATATAAAAATTA
1 TAAAATAATA-AAAATATATAAAAATTA
51632003 TAAAATAATAAAAA
1 TAAAATAATAAAAA
51632017 ACTTGAAAGT
Statistics
Matches: 53, Mismatches: 11, Indels: 11
0.71 0.15 0.15
Matches are distributed among these distances:
26 6 0.11
27 27 0.51
28 11 0.21
29 9 0.17
ACGTcount: A:0.68, C:0.03, G:0.02, T:0.27
Consensus pattern (27 bp):
TAAAATAATAAAAATATATAAAAATTA
Found at i:51633463 original size:43 final size:43
Alignment explanation
Indices: 51633403--51633493 Score: 130
Period size: 43 Copynumber: 2.1 Consensus size: 43
51633393 CTTTGAGTTC
* * * *
51633403 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
*
51633445 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
51633488 ATTACC
1 ATTACC
51633494 TTGCATATGT
Statistics
Matches: 43, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 4 0.09
43 39 0.91
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
Found at i:51633913 original size:43 final size:42
Alignment explanation
Indices: 51633810--51634230 Score: 493
Period size: 43 Copynumber: 9.8 Consensus size: 42
51633800 AGATTATGTT
* * *
51633810 TTTAGCGGCGGTTT-TGCTAGAAGCGCCGCTAAAGGTTTGTTC
1 TTTAGCGGC-GTTTGTGATAAAAGCGCCGCTAAAGGTTTGGTC
51633852 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTTATGGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTT-TGGTC
* * *
51633895 TATAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGGTA
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGT-TTGGTC
* * * *
51633938 TATAGCGGCGTTTGTGATAGAAGAGCCGCTAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGT-TTGGTC
** *
51633981 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGT-TTGGTC
* * ** *
51634024 TTTAGCGGCGTTTGTGAGAAAAGCACTACTAAAGGTCTTGGTA
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGT-TTGGTC
51634067 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGT-TTGGTC
* * * * *
51634110 TTTAGCGGCGTTTGTGAGAAAAGCGCTGCTAAAAGTGATGGTA
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGT-TTGGTC
* *
51634153 TTTAACGGCGTTTGTGGTAAAAGCGCCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGT-TTGGTC
** *
51634196 TTTAGCGGCGTTTGTTTCTAAAAACGCCGCTAAAG
1 TTTAGCGGCGTTTG-TGATAAAAGCGCCGCTAAAG
51634231 TTAGCGACGC
Statistics
Matches: 331, Mismatches: 44, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
41 4 0.01
42 30 0.09
43 280 0.85
44 17 0.05
ACGTcount: A:0.23, C:0.17, G:0.31, T:0.29
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTTTGGTC
Found at i:51634046 original size:129 final size:128
Alignment explanation
Indices: 51633810--51634210 Score: 556
Period size: 129 Copynumber: 3.1 Consensus size: 128
51633800 AGATTATGTT
* * *
51633810 TTTAGCGGCGGTTT-TGCTAGAAGCGCCGCTAAAGGT-TTGTTCTTTAGCGGCGTTTGTGATAAA
1 TTTAGCGGC-GTTTGTGATAGAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAAA
* * * *
51633873 AGCGCCGCTAAAGGTTATGGTCTATAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCATGGTA
65 AGCGCCGCTAAAGG-TGTGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTA
* * * *
51633938 TATAGCGGCGTTTGTGATAGAAGAGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGGAAAA
1 TTTAGCGGCGTTTGTGATAGAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAAAA
* **
51634003 GCGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGAGAAAAGCACTACTAAAGGTCTTGGTA
66 GCGCCGCTAAAGGT-GTGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTA
*
51634067 TTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAAAA
1 TTTAGCGGCGTTTGTGATAGAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAAAA
* * * * *
51634132 GCGCTGCTAAAAGTGATGGTATTTAACGGCGTTTGTG-GTAAAAGCGCCGCTAAAGGTCTTGGTC
66 GCGCCGCTAAAGGTG-TGGTCTTTAGCGGCGTTTGTGAG-AAAAGCGCCGCTAAAGGTCTTGGTA
51634196 TTTAGCGGCGTTTGT
1 TTTAGCGGCGTTTGT
51634211 TTCTAAAAAC
Statistics
Matches: 241, Mismatches: 27, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
127 4 0.02
128 31 0.13
129 206 0.85
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.29
Consensus pattern (128 bp):
TTTAGCGGCGTTTGTGATAGAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAGAAAA
GCGCCGCTAAAGGTGTGGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGGTA
Found at i:51634638 original size:19 final size:19
Alignment explanation
Indices: 51634614--51634689 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 19
51634604 TTTACATGAT
51634614 TTAATTATAAATATAAAAA
1 TTAATTATAAATATAAAAA
51634633 TTAATTATAAAGTATATTATTAAA
1 TTAATTATAAA-TATA--A--AAA
* *
51634657 TTAATTAT-ATTATAAATA
1 TTAATTATAAATATAAAAA
51634675 TTATATTAATAAATA
1 TTA-ATT-ATAAATA
51634690 AATTAAATAA
Statistics
Matches: 46, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
18 5 0.11
19 14 0.30
20 7 0.15
21 3 0.07
22 5 0.11
23 1 0.02
24 11 0.24
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.45
Consensus pattern (19 bp):
TTAATTATAAATATAAAAA
Found at i:51634656 original size:26 final size:25
Alignment explanation
Indices: 51634627--51634694 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 25
51634617 ATTATAAATA
51634627 TAAAAATTAATTATAAAGTA-TATTAT
1 TAAAAATTAATTATAAA-TATTA-TAT
51634653 TAAATTAATTATATTATAAATATTATAT
1 TAAA--AATTA-ATTATAAATATTATAT
*
51634681 TAATAAATAAATTA
1 TAA-AAATTAATTA
51634695 AATAAAGACA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
26 8 0.22
27 4 0.11
28 13 0.36
29 11 0.31
ACGTcount: A:0.54, C:0.00, G:0.01, T:0.44
Consensus pattern (25 bp):
TAAAAATTAATTATAAATATTATAT
Found at i:51634726 original size:12 final size:12
Alignment explanation
Indices: 51634709--51634733 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
51634699 AAGACAAATG
51634709 TATGGTGATGAT
1 TATGGTGATGAT
51634721 TATGGTGATGAT
1 TATGGTGATGAT
51634733 T
1 T
51634734 TGATACAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (12 bp):
TATGGTGATGAT
Found at i:51635038 original size:9 final size:9
Alignment explanation
Indices: 51635016--51635055 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
51635006 GAAACAGGGA
51635016 GAAAGGAAAG
1 GAAA-GAAAG
*
51635026 GAAAGAAAT
1 GAAAGAAAG
51635035 GAAAGAAA-
1 GAAAGAAAG
51635043 GAAAGAAAG
1 GAAAGAAAG
51635052 GAAA
1 GAAA
51635056 AACTAGAGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 8 0.29
9 16 0.57
10 4 0.14
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.03
Consensus pattern (9 bp):
GAAAGAAAG
Found at i:51635447 original size:17 final size:18
Alignment explanation
Indices: 51635425--51635458 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
51635415 TAAATGAGTT
51635425 AATTAGGAT-TAAATTGG
1 AATTAGGATATAAATTGG
*
51635442 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
51635459 AAAAGAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.41, C:0.00, G:0.24, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGG
Found at i:51636817 original size:26 final size:26
Alignment explanation
Indices: 51636787--51636838 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
51636777 AATGGTTGTG
*
51636787 GTTTGAAATTGCAGGGAAGGTTAGAT
1 GTTTGAAATTGCAGGAAAGGTTAGAT
51636813 GTTTGAAATTGCAGGAAAGGTTAGAT
1 GTTTGAAATTGCAGGAAAGGTTAGAT
51636839 AATTATAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.33, C:0.04, G:0.33, T:0.31
Consensus pattern (26 bp):
GTTTGAAATTGCAGGAAAGGTTAGAT
Found at i:51643841 original size:17 final size:17
Alignment explanation
Indices: 51643804--51643838 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
51643794 CAAAATAAAT
*
51643804 ATTATTTATTAAATTAA
1 ATTAATTATTAAATTAA
51643821 ATTAATTATATAAATTAA
1 ATTAATTAT-TAAATTAA
51643839 TTATTCCAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTAATTATTAAATTAA
Found at i:51643851 original size:13 final size:13
Alignment explanation
Indices: 51643818--51643842 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51643808 TTTATTAAAT
51643818 TAAATTAATTATA
1 TAAATTAATTATA
51643831 TAAATTAATTAT
1 TAAATTAATTAT
51643843 TCCAATTAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (13 bp):
TAAATTAATTATA
Found at i:51645866 original size:44 final size:44
Alignment explanation
Indices: 51645761--51645859 Score: 117
Period size: 44 Copynumber: 2.2 Consensus size: 44
51645751 GTGTGTACGA
* * * *
51645761 GCTTAGTACTTTGGTGCTCTTTGTTCAACACTTCAATGCTCTCT
1 GCTTAGCACTTTCGTGCTCTTTGATCAACACTTCAATGCTCACT
* * * *
51645805 GCTTATCACTTTCGTGCTCTTTGATCAGCATTTCGATGCTCACT
1 GCTTAGCACTTTCGTGCTCTTTGATCAACACTTCAATGCTCACT
*
51645849 TCTTAGCACTT
1 GCTTAGCACTT
51645860 CAGTGCTTTT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.16, C:0.26, G:0.15, T:0.42
Consensus pattern (44 bp):
GCTTAGCACTTTCGTGCTCTTTGATCAACACTTCAATGCTCACT
Found at i:51647540 original size:20 final size:20
Alignment explanation
Indices: 51647511--51647557 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
51647501 ATATATCTTG
51647511 AATT-ATTTGATTCTAATCA
1 AATTGATTTGATTCTAATCA
* *
51647530 ATTTGATTTGATTTTAATCA
1 AATTGATTTGATTCTAATCA
51647550 AATTGATT
1 AATTGATT
51647558 CAATTGCCCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (20 bp):
AATTGATTTGATTCTAATCA
Found at i:51648215 original size:40 final size:41
Alignment explanation
Indices: 51648132--51648226 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 41
51648122 GTTTGGATAA
* **
51648132 AAAACGCCACT-AAAGATCAAGCATTAGCGGCGCTTTTTGG
1 AAAACGCCGCTAAAAGATCAAGCATTAGCGGCGCTTTTCAG
*
51648172 AAAACGCCGCTAAAAGAT-AAGCATTAGCGGTG-TTTTCCAG
1 AAAACGCCGCTAAAAGATCAAGCATTAGCGGCGCTTTT-CAG
*
51648212 AAAACGCCGCAAAAA
1 AAAACGCCGCTAAAA
51648227 ACCTAAGCCC
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
39 4 0.08
40 38 0.79
41 6 0.12
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (41 bp):
AAAACGCCGCTAAAAGATCAAGCATTAGCGGCGCTTTTCAG
Found at i:51648320 original size:41 final size:41
Alignment explanation
Indices: 51648262--51648403 Score: 232
Period size: 41 Copynumber: 3.5 Consensus size: 41
51648252 TGAGCTTTCG
* *
51648262 GGGCTTTAGCGGTGTTTTTAGGAAAGTGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTAGGTAAGTGCCGCTAATGCTCA
51648303 GGGCTTTAGCGGCGTTTTT-GAGTAAGTGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTAG-GTAAGTGCCGCTAATGCTCA
* *
51648344 GGGATTTAGCAGCGTTTTTAGGTAAGTGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTAGGTAAGTGCCGCTAATGCTCA
51648385 GGGCTTTAGCGGCGTTTTT
1 GGGCTTTAGCGGCGTTTTT
51648404 TTGTGAAAAT
Statistics
Matches: 93, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
40 1 0.01
41 91 0.98
42 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.33
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTAGGTAAGTGCCGCTAATGCTCA
Found at i:51648699 original size:162 final size:157
Alignment explanation
Indices: 51648436--51648763 Score: 485
Period size: 162 Copynumber: 2.1 Consensus size: 157
51648426 ATAATTTTAG
* *
51648436 GGTTTAGGGGTTATTATAATTTAAAGTTTATCAATATGGTTTAGGGTTTTAGGGTTTATTATATA
1 GGTTTAGGGATTATTATAATTTAAAGTTTATCAATATGGTTTAGGGTTTTAGGGTTTATTAAATA
* * *
51648501 ATATTTATTATTTTAGGATTAGAGTTTTGAGTTTAGGGTTTATGATGTAAGTTTAGTGTTTTGGG
66 ATATTTATTATTTTAGGATTAGAGTCTTGAGTTTAGGGTTTATGATGTAAGTTTAGTATTTTGAG
* *
51648566 TTTAGGGTTTTGGGAGTTTGGTGATTAA
131 TTTAGGG-GTTGGGAGTTTGGGGATTAA
* *
51648594 GGTTTAGTGATTATTATAATTTAAAGTTTATCGTATATGGTTTAGGGTTTTAGGGTTAATCATTA
1 GGTTTAGGGATTATTATAATTTAAAGTTTATC-AATATGGTTTAGGGTTTTAGGGTT--T-ATTA
* *
51648659 AATAATGTTTATTATTTTGGGATTAGAGTCTTGAGTTTAGGGTTTATGATGTAAGTTTAGTATTT
62 AATAATATTTATTATTTTAGGATTAGAGTCTTGAGTTTAGGGTTTATGATGTAAGTTTAGTATTT
* *
51648724 TTAGTTTAGGGGTTGGGAGTTTGGGGTTTAA
127 TGAGTTTAGGGGTTGGGAGTTTGGGGATTAA
*
51648755 GATTTAGGG
1 GGTTTAGGG
51648764 TTTGGGGTTT
Statistics
Matches: 151, Mismatches: 15, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
158 30 0.20
159 23 0.15
161 25 0.17
162 73 0.48
ACGTcount: A:0.24, C:0.01, G:0.27, T:0.48
Consensus pattern (157 bp):
GGTTTAGGGATTATTATAATTTAAAGTTTATCAATATGGTTTAGGGTTTTAGGGTTTATTAAATA
ATATTTATTATTTTAGGATTAGAGTCTTGAGTTTAGGGTTTATGATGTAAGTTTAGTATTTTGAG
TTTAGGGGTTGGGAGTTTGGGGATTAA
Found at i:51649307 original size:13 final size:13
Alignment explanation
Indices: 51649291--51649316 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51649281 TTTTTAAATA
51649291 ATATATTAATAAT
1 ATATATTAATAAT
51649304 ATATATTAATAAT
1 ATATATTAATAAT
51649317 GTCTTTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATATTAATAAT
Found at i:51649944 original size:253 final size:254
Alignment explanation
Indices: 51649396--51650055 Score: 955
Period size: 253 Copynumber: 2.6 Consensus size: 254
51649386 TTGAAAATTT
51649396 ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGTAAAAACGCCACAAAATCTA
1 ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGT-AAAACGCCACAAAATCTA
* * * * *
51649461 AATATTAACGGCGTTTGTTCAGAAAACGCCTAAAAAAAGATA-TAAAAATTAAACAAAACGGCAC
65 AATACTAGCGGCGTTTGTTCGGAAAACGCCGAAAAAAACATATTAAAAATTAAACAAAACGGCAC
* * * * * *
51649525 CGCTTCATTGACGAGTTAAATGTTAGTGGCGTTTTTTTTGTCAAAATGTCGTAACAGTTGTGAAA
130 CGCTTCATTGACGAGTTAAATGTTAGTGGCG-TTTTCTTATCAAAACGCCGCAAAAGTTGTGAAA
*
51649590 CTAGTGACATTTTTTCGTAAGCGCCGCAAATGTTAAAATAGAAAACGACGTCGTTTTAAAC
194 CTAGTGACATTTTTTCGTAAGCGCCGCAAATGTTAAAATAGAAAACGACATCGTTTTAAAC
* *
51649651 ATAAATAATATTAATAAAAAGTTAATCAGTAGCAGCGTTTCCATGTAAAACGCCACCAAATCTAA
1 ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGTAAAACGCCACAAAATCTAA
* * * * *
51649716 ATACTAGCGGCATTTGTTTGGAAAACGCCGGAAAAAACATATTAAAAAATAAACAAAACGGCACT
66 ATACTAGCGGCGTTTGTTCGGAAAACGCCGAAAAAAACATATTAAAAATTAAACAAAACGGCACC
51649781 GCTTCATTGACGAGTTAAATGTTAGTGGCG-TTTCTTATCAAAACGCCGCAAAAGTTGTGAAACT
131 GCTTCATTGACGAGTTAAATGTTAGTGGCGTTTTCTTATCAAAACGCCGCAAAAGTTGTGAAACT
* * * * * *
51649845 AGTGGCATTTTTTCGTAAGTGCCGCAAATGTTGAAATGGAAAACGACATCGTTTTTAGC
196 AGTGACATTTTTTCGTAAGCGCCGCAAATGTTAAAATAGAAAACGACATCGTTTTAAAC
* * * *
51649904 ATAAATAATATTAATAGAAAGTTAATCAATAGCGGCGTTTCGATGTAGAACGCCACAAAATCTAA
1 ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGTAAAACGCCACAAAATCTAA
* * * * * *
51649969 ATACTAGCGGTGTTTGTTCGTAAAATGCCGCAAAGAACATATTAAAAATTAAACAAAACGGTACC
66 ATACTAGCGGCGTTTGTTCGGAAAACGCCGAAAAAAACATATTAAAAATTAAACAAAACGGCACC
* *
51650034 GCTTCGTTGACAAGTTAAATGT
131 GCTTCATTGACGAGTTAAATGT
51650056 CCGCAAAAGT
Statistics
Matches: 361, Mismatches: 43, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
253 214 0.59
254 51 0.14
255 96 0.27
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (254 bp):
ATAAATAATATTAATAAAAAGTTAATCAGTAGCGGCGTTTCCATGTAAAACGCCACAAAATCTAA
ATACTAGCGGCGTTTGTTCGGAAAACGCCGAAAAAAACATATTAAAAATTAAACAAAACGGCACC
GCTTCATTGACGAGTTAAATGTTAGTGGCGTTTTCTTATCAAAACGCCGCAAAAGTTGTGAAACT
AGTGACATTTTTTCGTAAGCGCCGCAAATGTTAAAATAGAAAACGACATCGTTTTAAAC
Found at i:51651043 original size:122 final size:122
Alignment explanation
Indices: 51650826--51651069 Score: 391
Period size: 122 Copynumber: 2.0 Consensus size: 122
51650816 CAACTGCTTT
* *
51650826 CCCTGACATACAACATTAGGATTCTATGTTACATACACTTTGAAACTTTCTGCATTCAGGATTGA
1 CCCTGACATACAACATTAGGATTCAATGTTACATACACTTTGAAACTTTCTGCATTCAGCATTGA
* *
51650891 CTTGAAAACTGGGAATCTAAGCTCAGAAATTGGGA-ATGGATCAAGTGGCACCTCATA
66 CTAGAAAACTAGGAATCTAAGCTCAGAAATTGGGACA-GGATCAAGTGGCACCTCATA
* * *
51650948 CCCTGACATGCAACATTAGGATTCAATGTTATATACACTTTGAACCTTTCTGCATTCAGCATTGA
1 CCCTGACATACAACATTAGGATTCAATGTTACATACACTTTGAAACTTTCTGCATTCAGCATTGA
* *
51651013 CTAGAAAACTAGGAATCTAAGCTCAGAAATTGTGACAGTATCAAGTGGCACCTCATA
66 CTAGAAAACTAGGAATCTAAGCTCAGAAATTGGGACAGGATCAAGTGGCACCTCATA
51651070 TAGCATGCAT
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
122 111 0.99
123 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (122 bp):
CCCTGACATACAACATTAGGATTCAATGTTACATACACTTTGAAACTTTCTGCATTCAGCATTGA
CTAGAAAACTAGGAATCTAAGCTCAGAAATTGGGACAGGATCAAGTGGCACCTCATA
Found at i:51653051 original size:43 final size:43
Alignment explanation
Indices: 51652954--51653074 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 43
51652944 GATATGTTTT
* * * * *
51652954 TAGCGGCGTTTGTGTGAAAAGTGCCGCTAAAGGTC-TGTTCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCAGGATCTA
* * *
51652996 TAGAGGCGTTTGTGGGAAAAGCCCCGCTAAAAGTCAGGATCTA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCAGGATCTA
*
51653039 TAGCGGCGTTTGTAAGAAAAGCGCCGCTAAAAGTCA
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCA
51653075 TTTTGTGTAA
Statistics
Matches: 67, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 30 0.45
43 37 0.55
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAAGTCAGGATCTA
Found at i:51653150 original size:38 final size:37
Alignment explanation
Indices: 51653076--51653180 Score: 102
Period size: 38 Copynumber: 2.7 Consensus size: 37
51653066 TAAAAGTCAT
* *
51653076 TTTGTGTAAAAGCGCCGCTAAAGGTCCTGATCTATAGCTGCG
1 TTTGTGGAAAAGCGCCGCTAAAGGT-C----CTATAGCGGCG
* * *
51653118 TTTGTGGAAAAAGTGCTGCTAAAGGTCCTATAGGGGCG
1 TTTGTGG-AAAAGCGCCGCTAAAGGTCCTATAGCGGCG
*
51653156 TTTGTGGGAAAGCGCCGCTAAAGGT
1 TTTGTGGAAAAGCGCCGCTAAAGGT
51653181 TATGATCTAT
Statistics
Matches: 54, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
37 15 0.28
38 16 0.30
42 7 0.13
43 16 0.30
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (37 bp):
TTTGTGGAAAAGCGCCGCTAAAGGTCCTATAGCGGCG
Found at i:51661310 original size:62 final size:59
Alignment explanation
Indices: 51661244--51661362 Score: 175
Period size: 62 Copynumber: 2.0 Consensus size: 59
51661234 TATTTTATTA
* * * *
51661244 ATTTAATATTAAATTTAATTTAATGTTTATCTTGTAGATAAATATTCTATTAATTTAATAAG
1 ATTTAATATTAAATTTAATCTAATATTTATC-T-T-GATAAATACTATATTAATTTAATAAG
51661306 ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATACTATATTAATTTAATA
1 ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATACTATATTAATTTAATA
51661363 TTAAAGTATA
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 22 0.42
60 1 0.02
61 1 0.02
62 29 0.55
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.50
Consensus pattern (59 bp):
ATTTAATATTAAATTTAATCTAATATTTATCTTGATAAATACTATATTAATTTAATAAG
Found at i:51671927 original size:19 final size:19
Alignment explanation
Indices: 51671891--51671926 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
51671881 TTATTTCATT
*
51671891 TTTAGTTTTAGAATTTTTA
1 TTTAGATTTAGAATTTTTA
51671910 TTTAGATTT-GAATTTTT
1 TTTAGATTTAGAATTTTT
51671927 TTAGGATGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.25, C:0.00, G:0.11, T:0.64
Consensus pattern (19 bp):
TTTAGATTTAGAATTTTTA
Found at i:51674822 original size:23 final size:24
Alignment explanation
Indices: 51674788--51674835 Score: 80
Period size: 23 Copynumber: 2.0 Consensus size: 24
51674778 GCCCGGCCTA
*
51674788 TTTTTAATTAAAATTAAAATTAAT
1 TTTTTAATTAAAATTAAAACTAAT
51674812 TTTTTAA-TAAAATTAAAACTAAT
1 TTTTTAATTAAAATTAAAACTAAT
51674835 T
1 T
51674836 GTTGTTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 16 0.70
24 7 0.30
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTTTAATTAAAATTAAAACTAAT
Found at i:51674847 original size:22 final size:21
Alignment explanation
Indices: 51674795--51674849 Score: 65
Period size: 23 Copynumber: 2.5 Consensus size: 21
51674785 CTATTTTTAA
* *
51674795 TTAAAATTAAAATTAATTTTT
1 TTAAAATTAAAACTAATTTTG
51674816 TAATAAAATTAAAACTAATTGTTG
1 T--TAAAATTAAAACTAATT-TTG
51674840 TTAAAATTAA
1 TTAAAATTAA
51674850 TTGTTAGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
21 1 0.03
22 9 0.31
23 16 0.55
24 3 0.10
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.44
Consensus pattern (21 bp):
TTAAAATTAAAACTAATTTTG
Found at i:51674860 original size:16 final size:16
Alignment explanation
Indices: 51674824--51674864 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
51674814 TTTAATAAAA
*
51674824 TTAAAACTAATTGTTG
1 TTAAAATTAATTGTTG
51674840 TTAAAATTAATTGTTAG
1 TTAAAATTAATTGTT-G
51674857 -TAAAATTA
1 TTAAAATTA
51674865 TCAAATTATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 22 0.96
17 1 0.04
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (16 bp):
TTAAAATTAATTGTTG
Found at i:51674970 original size:9 final size:9
Alignment explanation
Indices: 51674937--51674964 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
51674927 TTTATCAAAT
51674937 TATTAATTG
1 TATTAATTG
51674946 TATTAATTG
1 TATTAATTG
51674955 TATTAATTG
1 TATTAATTG
51674964 T
1 T
51674965 TATAATAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57
Consensus pattern (9 bp):
TATTAATTG
Found at i:51674975 original size:68 final size:68
Alignment explanation
Indices: 51674853--51675062 Score: 361
Period size: 68 Copynumber: 3.1 Consensus size: 68
51674843 AAATTAATTG
* *
51674853 TTAGTAAAATTATCAAATTATTAATTG--TTAATTGTATTAATTGTTGTAATAAAATCTAATATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
51674916 TGA
66 TGA
*
51674919 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTATAATAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
51674984 TGA
66 TGA
* *
51674987 TTAGTAAATTTATCAAATTATCAATTGTATTAATTGTATTAATTGTTGTAACAAAATCTAACATT
1 TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
51675052 TGA
66 TGA
51675055 TTAGTAAA
1 TTAGTAAA
51675063 ACAAACTTGA
Statistics
Matches: 136, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
66 26 0.19
68 110 0.81
ACGTcount: A:0.41, C:0.05, G:0.09, T:0.46
Consensus pattern (68 bp):
TTAGTAAATTTATCAAATTATTAATTGTATTAATTGTATTAATTGTTGTAATAAAATCTAACATT
TGA
Found at i:51675169 original size:22 final size:24
Alignment explanation
Indices: 51675129--51675172 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
51675119 AAATAAACTT
51675129 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACTATTATATTTTA
51675153 AAAATAAAAAA-TA-TATATTT
1 AAAATAAAAAACTATTATATTT
51675173 AATATTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 2 0.10
24 11 0.55
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
AAAATAAAAAACTATTATATTTTA
Found at i:51679931 original size:97 final size:97
Alignment explanation
Indices: 51679672--51679920 Score: 399
Period size: 97 Copynumber: 2.6 Consensus size: 97
51679662 ATCGATATCA
*
51679672 CAACACATTTAAATCAACAGAAAACGACTAACTTTTCTCGAATGTGTTTCAAATTCAGGATTTAG
1 CAACACATTTAAATCAACAGAAAACGACTAATTTTTCTCGAATGTGTTTCAAATTCAGGATTTAG
* *
51679737 CCATTAAGTTCGCGAAGAATTATTAAGGCTTT
66 CCATTAAGTTCGCGAAGAACTATTAAAGCTTT
* *
51679769 CAACACATTTAAAGCAACAGAAATCGACTAATTTTTCTCGAATGTGTTTCAAATTCAGGATTTAG
1 CAACACATTTAAATCAACAGAAAACGACTAATTTTTCTCGAATGTGTTTCAAATTCAGGATTTAG
*
51679834 CCATTATGTTCGCGAAGAACTATTAAAGCTTT
66 CCATTAAGTTCGCGAAGAACTATTAAAGCTTT
* * * * *
51679866 CAACGCATTTAAATCAACAGAAACCGACTAATTTTTCTCCAATCTATTTCAAATT
1 CAACACATTTAAATCAACAGAAAACGACTAATTTTTCTCGAATGTGTTTCAAATT
51679921 TAGAGTTTAG
Statistics
Matches: 140, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 140 1.00
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (97 bp):
CAACACATTTAAATCAACAGAAAACGACTAATTTTTCTCGAATGTGTTTCAAATTCAGGATTTAG
CCATTAAGTTCGCGAAGAACTATTAAAGCTTT
Found at i:51685617 original size:28 final size:26
Alignment explanation
Indices: 51685585--51685655 Score: 67
Period size: 28 Copynumber: 2.7 Consensus size: 26
51685575 CAAATTTATC
51685585 ATTAAGCCA-TTAAAATATTATTATTTGT
1 ATTAA-CCATTTAAAATATTATT-TTT-T
* *
51685613 ATTAACTATTTTAAATATTATTTTTT
1 ATTAACCATTTAAAATATTATTTTTT
*
51685639 ATT-A-TATTTAAAATATT
1 ATTAACCATTTAAAATATT
51685656 TCATGTATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
24 12 0.31
25 1 0.03
26 4 0.10
27 5 0.13
28 17 0.44
ACGTcount: A:0.39, C:0.04, G:0.03, T:0.54
Consensus pattern (26 bp):
ATTAACCATTTAAAATATTATTTTTT
Found at i:51686400 original size:11 final size:11
Alignment explanation
Indices: 51686379--51686480 Score: 88
Period size: 11 Copynumber: 9.5 Consensus size: 11
51686369 ATAAATCCTT
51686379 TCTCTAATTTCC
1 TCTC-AATTTCC
51686391 TCTCAATTTCC
1 TCTCAATTTCC
*
51686402 TCTCAATTTGC
1 TCTCAATTTCC
51686413 TCTCAATTTCC
1 TCTCAATTTCC
*
51686424 TCTCAA-ATCC
1 TCTCAATTTCC
* **
51686434 T-T--ACTTAA
1 TCTCAATTTCC
*
51686442 TCTCAATTTGC
1 TCTCAATTTCC
*
51686453 TTTCAATTTCC
1 TCTCAATTTCC
51686464 TCTCAAATTT-C
1 TCTC-AATTTCC
51686475 TCTCAA
1 TCTCAA
51686481 ATCCCTATTT
Statistics
Matches: 73, Mismatches: 12, Indels: 12
0.75 0.12 0.12
Matches are distributed among these distances:
7 1 0.01
8 2 0.03
9 2 0.03
10 6 0.08
11 53 0.73
12 9 0.12
ACGTcount: A:0.23, C:0.30, G:0.02, T:0.45
Consensus pattern (11 bp):
TCTCAATTTCC
Found at i:51688345 original size:18 final size:18
Alignment explanation
Indices: 51688322--51688364 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
51688312 TGCCAGGTGC
* *
51688322 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
51688340 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
*
51688358 GTTTCCT
1 GTATCCT
51688365 TTTTCGAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.44
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:51688644 original size:21 final size:22
Alignment explanation
Indices: 51688620--51688669 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
51688610 AAATACCCTA
*
51688620 CCGGAAG-AACCAGAATCCC-CG
1 CCGGAAGCAACCACAA-CCCTCG
51688641 CCGG-AGCAACCACAACCCTCG
1 CCGGAAGCAACCACAACCCTCG
51688662 CCGGAAGC
1 CCGGAAGC
51688670 TGGACAAAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 5 0.20
21 17 0.68
22 3 0.12
ACGTcount: A:0.30, C:0.42, G:0.24, T:0.04
Consensus pattern (22 bp):
CCGGAAGCAACCACAACCCTCG
Found at i:51691542 original size:39 final size:39
Alignment explanation
Indices: 51691488--51691565 Score: 129
Period size: 39 Copynumber: 2.0 Consensus size: 39
51691478 CCGCTACCAA
* *
51691488 ACATGGGTTGTTCCGTATTTTGTAACCCACTAACCGAGT
1 ACATGGGCTGCTCCGTATTTTGTAACCCACTAACCGAGT
*
51691527 ACATGGGCTGCTCCGTGTTTTGTAACCCACTAACCGAGT
1 ACATGGGCTGCTCCGTATTTTGTAACCCACTAACCGAGT
51691566 GTCGGGCAGG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.31
Consensus pattern (39 bp):
ACATGGGCTGCTCCGTATTTTGTAACCCACTAACCGAGT
Found at i:51692271 original size:126 final size:126
Alignment explanation
Indices: 51692038--51692582 Score: 914
Period size: 126 Copynumber: 4.3 Consensus size: 126
51692028 TTTTATAGCC
* * *
51692038 TCAGGAGTTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAG
1 TCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGAAGCTTTTTTCAGTACTTCTGCTGACAAAG
*
51692103 TATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTT
66 CATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTT
* *
51692164 TCAAGAGCTACTGTAGCAAAAGCGCGTCCACGTGGAAGCTTTTTTCAGTACTTCTGCTAACAAAG
1 TCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGAAGCTTTTTTCAGTACTTCTGCTGACAAAG
*
51692229 CATCCTGCTCAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTT
66 CATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTT
* * *
51692290 TCAGGAGCTACTCTAGCAAAAGCGCGTCCACGT-GAGAGCTTTTTTTAGTACTTCTGTTGACAAA
1 TCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGA-AGCTTTTTTCAGTACTTCTGCTGACAAA
51692354 GCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTT
65 GCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTT
* * *
51692416 TCAGGAGCTACTCTAGCAAAAGCGCGTCCACGT-GAGAGCTTTTTTTAGTACTTCTGTTGACAAA
1 TCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGA-AGCTTTTTTCAGTACTTCTGCTGACAAA
*
51692480 GCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTC
65 GCATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTT
* *
51692542 TCAGGAGCCACTGTAGCAAAAGCGCGTCCACGTGGGAGCTT
1 TCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGAAGCTT
51692583 CTTTAAATTA
Statistics
Matches: 400, Mismatches: 17, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
125 2 0.00
126 397 0.99
127 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.20, T:0.32
Consensus pattern (126 bp):
TCAGGAGCTACTGTAGCAAAAGCGCGTCCACGTGGAAGCTTTTTTCAGTACTTCTGCTGACAAAG
CATCCTGCTTAAAGCGTTTTTGACACTGTTTGCTCAGAAACGTCTACTCGAAATTATTTTT
Found at i:51692852 original size:91 final size:92
Alignment explanation
Indices: 51692619--51692938 Score: 399
Period size: 91 Copynumber: 3.4 Consensus size: 92
51692609 AGTAACTGTA
* * * * * * *
51692619 AACCCCAAACCCTAATTTATTTGAGTTTTTACTTAAAAACCCTAAACCCTAAACCTTAAACTAAT
1 AACCCTAAACCCTAA-TT-TTTGA-TTTTTTCTTAAAAACCCTTAACTCTAAATCTTAATCTGAT
* *
51692684 TTATTATAAATTTATAATTAATTTACTCAAGT
63 TT-TTA-AAATTTTTAATTAAATTACTCAAGT
* * *
51692716 AACCCTGAACCCTAATTTATTTAATTTTTCCTTAAAAACCCTTAACTCTAAATCTTAATCTGATT
1 AACCCTAAACCCTAA-TT-TTTGATTTTTTCTTAAAAACCCTTAACTCTAAATCTTAATCTGATT
** *
51692781 TTTAATTTTTTTAAATAAATTACTCAAGT
64 TTTAAAATTTTTAATTAAATTACTCAAGT
* *
51692810 AACCCTAAACCTTAA-TTTTGATTTTTTCTTAAAAACCCTTAACTCTAAATCCTAATCTGATTTT
1 AACCCTAAACCCTAATTTTTGATTTTTTCTTAAAAACCCTTAACTCTAAATCTTAATCTGATTTT
51692874 TAAAATTTTTAATTAAATTACTCAAGT
66 TAAAATTTTTAATTAAATTACTCAAGT
51692901 AACCCTAAACCCTAATTTAATTGATTTTTTCTTAAAAA
1 AACCCTAAACCCTAATTT--TTGATTTTTTCTTAAAAA
51692939 ATAATAAACA
Statistics
Matches: 197, Mismatches: 23, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
91 83 0.42
92 3 0.02
94 51 0.26
95 3 0.02
96 36 0.18
97 21 0.11
ACGTcount: A:0.38, C:0.18, G:0.03, T:0.41
Consensus pattern (92 bp):
AACCCTAAACCCTAATTTTTGATTTTTTCTTAAAAACCCTTAACTCTAAATCTTAATCTGATTTT
TAAAATTTTTAATTAAATTACTCAAGT
Found at i:51692883 original size:47 final size:45
Alignment explanation
Indices: 51692735--51692876 Score: 130
Period size: 46 Copynumber: 3.1 Consensus size: 45
51692725 CCCTAATTTA
*
51692735 TTTAATTTTTCCTTAAAAACCCTTAACTCTAAATCTTAATCTGATT
1 TTTAATTTTT-CTTAAAAACCCTTAACTCTAAATCCTAATCTGATT
* * * * *
51692781 TTTAATTTTT-TTAAATAA--ATT-ACTCAAGTAACCCTAAACCTTAATT
1 TTTAATTTTTCTTAAA-AACCCTTAACTCTA--AATCCT-AATC-TGATT
* *
51692827 TTGATTTTTTCTTAAAAACCCTTAACTCTAAATCCTAATCTGATT
1 TTTAATTTTTCTTAAAAACCCTTAACTCTAAATCCTAATCTGATT
51692872 TTTAA
1 TTTAA
51692877 AATTTTTAAT
Statistics
Matches: 72, Mismatches: 15, Indels: 19
0.68 0.14 0.18
Matches are distributed among these distances:
42 5 0.07
43 2 0.03
44 9 0.12
45 12 0.17
46 27 0.38
47 10 0.14
48 2 0.03
49 5 0.07
ACGTcount: A:0.35, C:0.18, G:0.03, T:0.45
Consensus pattern (45 bp):
TTTAATTTTTCTTAAAAACCCTTAACTCTAAATCCTAATCTGATT
Found at i:51693389 original size:21 final size:23
Alignment explanation
Indices: 51693351--51693395 Score: 76
Period size: 21 Copynumber: 2.0 Consensus size: 23
51693341 AATCTCAAAG
51693351 TAAAAAATAATAATAAAGCATAT
1 TAAAAAATAATAATAAAGCATAT
51693374 TAAAAAATAA-AA-AAAGCATAT
1 TAAAAAATAATAATAAAGCATAT
51693395 T
1 T
51693396 TTCACCTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 10 0.45
22 2 0.09
23 10 0.45
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.24
Consensus pattern (23 bp):
TAAAAAATAATAATAAAGCATAT
Found at i:51698707 original size:46 final size:46
Alignment explanation
Indices: 51698654--51698744 Score: 146
Period size: 46 Copynumber: 2.0 Consensus size: 46
51698644 TGAAACGAAC
*
51698654 TCAGCCTCCATAGTGGAAGTAGTAGTTAAAGTGTGCTTGACGCTCT
1 TCAGCCTCCATAGTGGAAGTAGCAGTTAAAGTGTGCTTGACGCTCT
* * *
51698700 TCAGCCTCCATAGTGGAAGTAGCAGTTAAGGTTTGCTTGATGCTC
1 TCAGCCTCCATAGTGGAAGTAGCAGTTAAAGTGTGCTTGACGCTC
51698745 CTCCAAGATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.31
Consensus pattern (46 bp):
TCAGCCTCCATAGTGGAAGTAGCAGTTAAAGTGTGCTTGACGCTCT
Found at i:51704530 original size:13 final size:13
Alignment explanation
Indices: 51704512--51704536 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
51704502 TCAAACGATT
51704512 AAATTTTCACACG
1 AAATTTTCACACG
51704525 AAATTTTCACAC
1 AAATTTTCACAC
51704537 ATATAACTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:51705529 original size:42 final size:41
Alignment explanation
Indices: 51705426--51705549 Score: 173
Period size: 42 Copynumber: 3.0 Consensus size: 41
51705416 TGCTATCATA
*
51705426 TATCGATGCCAATAG--CCAG-CTATGGTCTTACACGAATCTC
1 TATCGATGCCAAT-GTCCCAGAC-ATGGTCTTACACGAATCAC
*
51705466 TATCAATGCCAATGTCCCAGACATGGTCTTACACGAATCAC
1 TATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCAC
51705507 GTATCGATGCCAATGTCCCAGACATGGTCTTACACGTAATCAC
1 -TATCGATGCCAATGTCCCAGACATGGTCTTACACG-AATCAC
51705550 ATCTCAGTAT
Statistics
Matches: 76, Mismatches: 3, Indels: 7
0.88 0.03 0.08
Matches are distributed among these distances:
39 1 0.01
40 12 0.16
41 22 0.29
42 35 0.46
43 6 0.08
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (41 bp):
TATCGATGCCAATGTCCCAGACATGGTCTTACACGAATCAC
Done.