Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 169 of 182
Found at i:51709698 original size:8 final size:8
Alignment explanation
Indices: 51709685--51709709 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
51709675 GGATTTTTTA
51709685 TATTACAT
1 TATTACAT
51709693 TATTACAT
1 TATTACAT
51709701 TATTACAT
1 TATTACAT
51709709 T
1 T
51709710 TTTAATAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.12, G:0.00, T:0.52
Consensus pattern (8 bp):
TATTACAT
Found at i:51709888 original size:12 final size:11
Alignment explanation
Indices: 51709867--51709919 Score: 56
Period size: 12 Copynumber: 4.8 Consensus size: 11
51709857 TTTTACACAT
51709867 TTAATTTTTAA
1 TTAATTTTTAA
51709878 TTAACTTTTTAA
1 TTAA-TTTTTAA
*
51709890 ATAATATTTTAA
1 TTAAT-TTTTAA
*
51709902 TT-A-TTGTAA
1 TTAATTTTTAA
51709911 TTAATTTTT
1 TTAATTTTT
51709920 TTTCAATTTC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
9 7 0.21
10 1 0.03
11 9 0.26
12 17 0.50
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (11 bp):
TTAATTTTTAA
Found at i:51710847 original size:16 final size:16
Alignment explanation
Indices: 51710799--51710850 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
51710789 ATTTGGATCA
* *
51710799 ATTTAGAGTTTGAATA
1 ATTTTGAGTTTGAATT
*
51710815 ATTTTGAGATT-AGATT
1 ATTTTGAGTTTGA-ATT
*
51710831 ATTTTGTGTTTGAATT
1 ATTTTGAGTTTGAATT
51710847 ATTT
1 ATTT
51710851 AGATTCACAC
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 1 0.03
16 27 0.93
17 1 0.03
ACGTcount: A:0.29, C:0.00, G:0.17, T:0.54
Consensus pattern (16 bp):
ATTTTGAGTTTGAATT
Found at i:51711245 original size:29 final size:30
Alignment explanation
Indices: 51711205--51711268 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 30
51711195 TAATAAAGAT
*
51711205 AAAATTATATTTTAGCCTCT-AAAATTATA
1 AAAATTATATTTAAGCCTCTAAAAATTATA
** *
51711234 AAAATT-TGATTTAATTCTTTAAAAATTATA
1 AAAATTAT-ATTTAAGCCTCTAAAAATTATA
51711264 AAAAT
1 AAAAT
51711269 ATAAATTATA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
28 1 0.03
29 14 0.48
30 14 0.48
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (30 bp):
AAAATTATATTTAAGCCTCTAAAAATTATA
Found at i:51716343 original size:22 final size:24
Alignment explanation
Indices: 51716318--51716361 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
51716308 AACCCTGGTA
51716318 TAATTTT-TC-TCAGAATGAAGTT
1 TAATTTTGTCTTCAGAATGAAGTT
*
51716340 TAATTTTGTCTTGAGAATGAAG
1 TAATTTTGTCTTCAGAATGAAG
51716362 GAAGGACTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 7 0.37
23 2 0.11
24 10 0.53
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (24 bp):
TAATTTTGTCTTCAGAATGAAGTT
Found at i:51723674 original size:32 final size:33
Alignment explanation
Indices: 51723629--51723690 Score: 92
Period size: 32 Copynumber: 1.9 Consensus size: 33
51723619 TCTTGTTTCA
*
51723629 AAAACATAAAAAAATTATGTTAAAA-AAATTGG
1 AAAACATAAAAAAACTATGTTAAAAGAAATTGG
51723661 AAAACA-AAGAAAAACTATGTTAAAAGAAAT
1 AAAACATAA-AAAAACTATGTTAAAAGAAAT
51723691 GGAGAAGAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 2 0.07
32 21 0.78
33 4 0.15
ACGTcount: A:0.65, C:0.05, G:0.10, T:0.21
Consensus pattern (33 bp):
AAAACATAAAAAAACTATGTTAAAAGAAATTGG
Found at i:51723829 original size:21 final size:20
Alignment explanation
Indices: 51723805--51723847 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
51723795 GAAGGAAAAC
51723805 AAAGAA-AAAAAAAGAAAGTTA
1 AAAGAACAAAAAAA-AAA-TTA
*
51723826 AAAGAACATAAAAAAAATTA
1 AAAGAACAAAAAAAAAATTA
51723846 AA
1 AA
51723848 TTGCTCAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 5 0.25
21 9 0.45
22 6 0.30
ACGTcount: A:0.77, C:0.02, G:0.09, T:0.12
Consensus pattern (20 bp):
AAAGAACAAAAAAAAAATTA
Found at i:51723834 original size:63 final size:62
Alignment explanation
Indices: 51723737--51723858 Score: 219
Period size: 63 Copynumber: 2.0 Consensus size: 62
51723727 AATGGGAATG
51723737 GGAAAACAAAGAAAAAAAGAAAGTTAAAAGAACAT-AAAAAAATTAAATTGCTCAAAACGAA
1 GGAAAACAAAGAAAAAAAGAAAGTTAAAAGAACATAAAAAAAATTAAATTGCTCAAAACGAA
51723798 GGAAAACAAAGAAAAAAAAAGAAAGTTAAAAGAACATAAAAAAAATTAAATTGCTCAAAAC
1 GGAAAACAAAG--AAAAAAAGAAAGTTAAAAGAACATAAAAAAAATTAAATTGCTCAAAAC
51723859 AAAAAAATAT
Statistics
Matches: 58, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
61 11 0.19
63 24 0.41
64 23 0.40
ACGTcount: A:0.66, C:0.08, G:0.12, T:0.13
Consensus pattern (62 bp):
GGAAAACAAAGAAAAAAAGAAAGTTAAAAGAACATAAAAAAAATTAAATTGCTCAAAACGAA
Found at i:51724459 original size:38 final size:38
Alignment explanation
Indices: 51724387--51724461 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 38
51724377 AAAAAAAAAT
**
51724387 GCTTTTAAATAGTTACGAGTTGACAAAATTAGAATCTA
1 GCTTTTAAATAGTTACGAGTTGACAAAACCAGAATCTA
* *
51724425 GCTTTTAAA-AGATTACGATTTGACAGAACCAGAATCT
1 GCTTTTAAATAG-TTACGAGTTGACAAAACCAGAATCT
51724462 GGCTATTGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
37 2 0.06
38 30 0.94
ACGTcount: A:0.39, C:0.13, G:0.16, T:0.32
Consensus pattern (38 bp):
GCTTTTAAATAGTTACGAGTTGACAAAACCAGAATCTA
Found at i:51733144 original size:27 final size:27
Alignment explanation
Indices: 51733114--51733165 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
51733104 AAATATAGGT
*
51733114 AAAATTTTAGAAAATTAAAAAAATATA
1 AAAATTTAAGAAAATTAAAAAAATATA
* *
51733141 AAAATTTAAGAAAATTCAAATAATA
1 AAAATTTAAGAAAATTAAAAAAATA
51733166 GTTTCATTTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.65, C:0.02, G:0.04, T:0.29
Consensus pattern (27 bp):
AAAATTTAAGAAAATTAAAAAAATATA
Found at i:51737949 original size:29 final size:30
Alignment explanation
Indices: 51737911--51737975 Score: 73
Period size: 30 Copynumber: 2.2 Consensus size: 30
51737901 GAAATTTAGG
*
51737911 AATTTAATCTGTT-T-ACTTTTA-TTTTATAA
1 AATTTAATCT-TTCTAACTTTTAGATTT-TAA
*
51737940 AATTTCATCTTTCTAACTTTTAGATTTTAA
1 AATTTAATCTTTCTAACTTTTAGATTTTAA
51737970 AATTTA
1 AATTTA
51737976 GATTGTTAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
28 2 0.07
29 10 0.33
30 15 0.50
31 3 0.10
ACGTcount: A:0.32, C:0.09, G:0.03, T:0.55
Consensus pattern (30 bp):
AATTTAATCTTTCTAACTTTTAGATTTTAA
Found at i:51740004 original size:18 final size:18
Alignment explanation
Indices: 51739981--51740049 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
51739971 AGCTCTCAGG
51739981 CATTCTTCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
51739999 CATTCTTCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
** ***
51740017 CGGTAAGCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
*
51740035 CACTCTTCTCCCTTC
1 CATTCTTCTCCCTTC
51740050 CTTCATTCCT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 41 1.00
ACGTcount: A:0.12, C:0.45, G:0.04, T:0.39
Consensus pattern (18 bp):
CATTCTTCTCCCTTCATC
Found at i:51742197 original size:13 final size:13
Alignment explanation
Indices: 51742179--51742206 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
51742169 CTTGTACAAG
51742179 TAAACTTCATAAA
1 TAAACTTCATAAA
51742192 TAAACTTCATAAA
1 TAAACTTCATAAA
51742205 TA
1 TA
51742207 GAGAAAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.14, G:0.00, T:0.32
Consensus pattern (13 bp):
TAAACTTCATAAA
Found at i:51742634 original size:14 final size:14
Alignment explanation
Indices: 51742611--51742650 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
51742601 ACAAAAAAGT
*
51742611 AAAACATTTTTC-A
1 AAAACATTTTACGA
51742624 AAAATCATTTTACGA
1 AAAA-CATTTTACGA
51742639 AAAACATTTTAC
1 AAAACATTTTAC
51742651 TAGCAATCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 4 0.17
14 15 0.62
15 5 0.21
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (14 bp):
AAAACATTTTACGA
Found at i:51745618 original size:25 final size:25
Alignment explanation
Indices: 51745584--51745632 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
51745574 TAACAGTGAA
51745584 TAATACATAATAAATTTCAAAACAG
1 TAATACATAATAAATTTCAAAACAG
* * *
51745609 TAATGCATAATAGATTTTAAAACA
1 TAATACATAATAAATTTCAAAACA
51745633 AATGTATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.53, C:0.10, G:0.06, T:0.31
Consensus pattern (25 bp):
TAATACATAATAAATTTCAAAACAG
Found at i:51745641 original size:23 final size:24
Alignment explanation
Indices: 51745589--51745641 Score: 63
Period size: 25 Copynumber: 2.2 Consensus size: 24
51745579 GTGAATAATA
51745589 CATAATAAATTTCAAAACAGTAATG
1 CATAATAAATTTCAAAACAG-AATG
* *
51745614 CATAATAGATTTTAAAACA-AATG
1 CATAATAAATTTCAAAACAGAATG
*
51745637 TATAA
1 CATAA
51745642 ATAATCTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 8 0.32
25 17 0.68
ACGTcount: A:0.53, C:0.09, G:0.08, T:0.30
Consensus pattern (24 bp):
CATAATAAATTTCAAAACAGAATG
Found at i:51746379 original size:20 final size:20
Alignment explanation
Indices: 51746351--51746390 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
51746341 GGCCAACCTG
51746351 GGTCACCGGACCACC-GTGGC
1 GGTCACCGG-CCACCAGTGGC
*
51746371 GGTCGCCGGCCACCAGTGGC
1 GGTCACCGGCCACCAGTGGC
51746391 TCCGTTCGCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.12, C:0.40, G:0.38, T:0.10
Consensus pattern (20 bp):
GGTCACCGGCCACCAGTGGC
Found at i:51747331 original size:50 final size:50
Alignment explanation
Indices: 51747230--51747335 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 50
51747220 TGGGAAACAA
* ***
51747230 GATTCGCTATTGTAGCTTCAATCTGTTCCACTAAACTGCCCGGGAAGTAG
1 GATTCGCTATTGTAGATTCAATCTGTTCCACTAAACTGCCAAAGAAGTAG
* *
51747280 GATTCGCTGTTGTAGATTCAATCTGTTCCACTGTAA-TGCCAAAG-AGATAG
1 GATTCGCTATTGTAGATTCAATCTGTTCCACT-AAACTGCCAAAGAAG-TAG
51747330 GATTCG
1 GATTCG
51747336 TTGGCCACAA
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
49 2 0.04
50 44 0.92
51 2 0.04
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (50 bp):
GATTCGCTATTGTAGATTCAATCTGTTCCACTAAACTGCCAAAGAAGTAG
Found at i:51747791 original size:132 final size:132
Alignment explanation
Indices: 51747540--51747908 Score: 544
Period size: 132 Copynumber: 2.8 Consensus size: 132
51747530 TACAGGAAGG
* * * * * *
51747540 CAAGATCTGCTATTTTCAACCTACTCCAATGCTGCTCAGGGAGATAGGACTGGTGGCTTAAATAT
1 CAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACTGGTGGCTTAAATCT
* * * *
51747605 GCTTCCCTACTACCTTGAGAAGATAAGATTCGCCATAC-TCGATCTGCTCCACTACTGCTTAGGG
66 GCTTCCCTACTTCCTTGGGAAGATAATATTCGCCGT-CTTCGATCTGCTCCACTACTGCTTAGGG
51747669 AGA
130 AGA
* *
51747672 C-AGAATCTACAATCTTCAACCTACTCCACTATTGCTCAGGGAGATAGGACTGATGGCTTAAATC
1 CAAG-ATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACTGGTGGCTTAAATC
* *
51747736 TGCTTCCCTGCTTCCTTGGGAAGATAATATTCGCCGTCTTCGATCTGCTCTACTACTGCTTAGGG
65 TGCTTCCCTACTTCCTTGGGAAGATAATATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGG
51747801 AGA
130 AGA
* *
51747804 CAAGATCTACAATCTTTAACCTACTCCACTACTGTTCAGGGAGATAGGACTGGTGGCTTAAATCT
1 CAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACTGGTGGCTTAAATCT
* *
51747869 ACTTCCCTACTTCCTTGGGAAGATAATATTCGTCGTCTTC
66 GCTTCCCTACTTCCTTGGGAAGATAATATTCGCCGTCTTC
51747909 TTCAATCCAC
Statistics
Matches: 213, Mismatches: 21, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
131 3 0.01
132 208 0.98
133 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (132 bp):
CAAGATCTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACTGGTGGCTTAAATCT
GCTTCCCTACTTCCTTGGGAAGATAATATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGA
GA
Found at i:51750498 original size:55 final size:55
Alignment explanation
Indices: 51750414--51750519 Score: 185
Period size: 55 Copynumber: 1.9 Consensus size: 55
51750404 TACCAAGGGT
* *
51750414 TATCATCCTTTTTTCCCTATTCGATATTGTGACAATGAGTTGGGGTTTCATGGGC
1 TATCATCCTTTTCTCCCTATTCGATATTGTGACAATAAGTTGGGGTTTCATGGGC
*
51750469 TATCATCCTTTTCTCCCTCTTCGATATTGTGACAATAAGTTGGGGTTTCAT
1 TATCATCCTTTTCTCCCTATTCGATATTGTGACAATAAGTTGGGGTTTCAT
51750520 AGATACTTAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.19, C:0.20, G:0.19, T:0.42
Consensus pattern (55 bp):
TATCATCCTTTTCTCCCTATTCGATATTGTGACAATAAGTTGGGGTTTCATGGGC
Found at i:51763950 original size:18 final size:19
Alignment explanation
Indices: 51763927--51763977 Score: 54
Period size: 18 Copynumber: 2.8 Consensus size: 19
51763917 TTAATTTCAC
51763927 CAAATTATATCATTATCA-
1 CAAATTATATCATTATCAT
* *
51763945 CAAATT-TTTAATT-TCAT
1 CAAATTATATCATTATCAT
*
51763962 CGAATTATATCATTAT
1 CAAATTATATCATTAT
51763978 ATTTTCTGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 5
0.71 0.14 0.14
Matches are distributed among these distances:
16 3 0.12
17 10 0.40
18 11 0.44
19 1 0.04
ACGTcount: A:0.39, C:0.14, G:0.02, T:0.45
Consensus pattern (19 bp):
CAAATTATATCATTATCAT
Found at i:51763950 original size:35 final size:35
Alignment explanation
Indices: 51763911--51763977 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
51763901 CATAAGTAAG
51763911 AAATTTTTAATTTCACCAAATTATATCATTATCAC
1 AAATTTTTAATTTCACCAAATTATATCATTATCAC
* *
51763946 AAATTTTTAATTTCATCGAATTATATCATTAT
1 AAATTTTTAATTTCACCAAATTATATCATTAT
51763978 ATTTTCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.39, C:0.13, G:0.01, T:0.46
Consensus pattern (35 bp):
AAATTTTTAATTTCACCAAATTATATCATTATCAC
Found at i:51769640 original size:14 final size:14
Alignment explanation
Indices: 51769621--51769647 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
51769611 TTCTCTTTCA
51769621 CACTTGTATTTTAC
1 CACTTGTATTTTAC
51769635 CACTTGTATTTTA
1 CACTTGTATTTTA
51769648 TTTTATCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.19, G:0.07, T:0.52
Consensus pattern (14 bp):
CACTTGTATTTTAC
Found at i:51771638 original size:13 final size:15
Alignment explanation
Indices: 51771619--51771657 Score: 55
Period size: 13 Copynumber: 2.7 Consensus size: 15
51771609 TTACTCATTA
51771619 CAAGAGAAGTAA-AG
1 CAAGAGAAGTAAGAG
*
51771633 -AAGAGAAGGAAGAG
1 CAAGAGAAGTAAGAG
51771647 CAAGAGAAGTA
1 CAAGAGAAGTA
51771658 GTCAAGAGCA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
13 10 0.48
14 2 0.10
15 9 0.43
ACGTcount: A:0.56, C:0.05, G:0.33, T:0.05
Consensus pattern (15 bp):
CAAGAGAAGTAAGAG
Found at i:51773078 original size:28 final size:28
Alignment explanation
Indices: 51773033--51773088 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
51773023 CTTACTCATT
*
51773033 GCAAGAGAAGCTGAGAAGAGAAAGAAAA
1 GCAAGAGAAGCAGAGAAGAGAAAGAAAA
* *
51773061 GCAAGAGAAGCAGGGAAGAGAAATAAAA
1 GCAAGAGAAGCAGAGAAGAGAAAGAAAA
51773089 AATAGAGGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.57, C:0.07, G:0.32, T:0.04
Consensus pattern (28 bp):
GCAAGAGAAGCAGAGAAGAGAAAGAAAA
Found at i:51774010 original size:28 final size:28
Alignment explanation
Indices: 51773978--51774056 Score: 126
Period size: 28 Copynumber: 2.8 Consensus size: 28
51773968 CTCATTTATT
51773978 GCAAGAGAAGCAGAGAAGAA-AAAGAAGA
1 GCAAGAGAAGCAGAGAA-AAGAAAGAAGA
51774006 GCAAGAGAAGCA-ACGAAAAGAAAGAAGA
1 GCAAGAGAAGCAGA-GAAAAGAAAGAAGA
51774034 GCAAGAGAAGCAGAGAAAAGAAA
1 GCAAGAGAAGCAGAGAAAAGAAA
51774057 TAAAGAAAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
27 3 0.06
28 44 0.92
29 1 0.02
ACGTcount: A:0.61, C:0.09, G:0.30, T:0.00
Consensus pattern (28 bp):
GCAAGAGAAGCAGAGAAAAGAAAGAAGA
Found at i:51774045 original size:9 final size:9
Alignment explanation
Indices: 51773978--51774050 Score: 53
Period size: 9 Copynumber: 8.0 Consensus size: 9
51773968 CTCATTTATT
51773978 GCAAGAGAA
1 GCAAGAGAA
51773987 GC-AGAGAA
1 GCAAGAGAA
* *
51773995 GAAAAAGAAGA
1 GCAAGAG-A-A
51774006 GCAAGAGAA
1 GCAAGAGAA
*
51774015 GCAACGAAAA
1 GCAA-GAGAA
*
51774025 GAAAGA-AGA
1 GCAAGAGA-A
51774034 GCAAGAGAA
1 GCAAGAGAA
51774043 GC-AGAGAA
1 GCAAGAGAA
51774051 AAGAAATAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 13
0.72 0.10 0.18
Matches are distributed among these distances:
8 14 0.27
9 21 0.41
10 10 0.20
11 6 0.12
ACGTcount: A:0.59, C:0.10, G:0.32, T:0.00
Consensus pattern (9 bp):
GCAAGAGAA
Found at i:51777980 original size:3 final size:3
Alignment explanation
Indices: 51777974--51778002 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
51777964 TTATTATCAT
51777974 TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
1 TAC TAC TAC TAC TAC TAC TAC TAC TAC TA
51778003 TTATTCAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
TAC
Found at i:51778566 original size:117 final size:117
Alignment explanation
Indices: 51778352--51778573 Score: 306
Period size: 117 Copynumber: 1.9 Consensus size: 117
51778342 AAAAGTTTTG
* * *
51778352 ATTTTTTTTAAAAAGAGAAAGTTTAATTTTTTTTAAATAAAAATATGTTTTTTAGTGATATTAAA
1 ATTTTTTTTAAAAAGAGAAAGTTTAA-TTTTTTAAAATAAAAATATATTTTTTAGTCATATTAAA
51778417 GGAAAAGTTTAAATTCTCAAAACAAATATTTTGAT-TTTTAAGAAAAATAGTA
65 GGAAAAGTTTAAATTCTCAAAACAAATATTTTGATCTTTTAAGAAAAATAGTA
* *
51778469 ATTTTTTTTAAAAAAGAGAAAGTTTAGA-TTTTTAAAATAAAAATCTATTTTTTAGTCATTTTAA
1 ATTTTTTTT-AAAAAGAGAAAGTTTA-ATTTTTTAAAATAAAAATATATTTTTTAGTCATATTAA
* * * *
51778533 AGGAAAAGTTTAAAATTTTTAAAATAAA-GTTTTGATCTTTT
64 AGGAAAAGTTT-AAATTCTCAAAACAAATATTTTGATCTTTT
51778574 TCAACTATTT
Statistics
Matches: 92, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
117 58 0.63
118 33 0.36
119 1 0.01
ACGTcount: A:0.43, C:0.03, G:0.10, T:0.44
Consensus pattern (117 bp):
ATTTTTTTTAAAAAGAGAAAGTTTAATTTTTTAAAATAAAAATATATTTTTTAGTCATATTAAAG
GAAAAGTTTAAATTCTCAAAACAAATATTTTGATCTTTTAAGAAAAATAGTA
Found at i:51779340 original size:3 final size:3
Alignment explanation
Indices: 51779334--51779359 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
51779324 TATTGTTATT
51779334 ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC AT
51779360 GTCAAGGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (3 bp):
ATC
Found at i:51779993 original size:3 final size:3
Alignment explanation
Indices: 51779985--51780016 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
51779975 AAATCTATTA
51779985 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
51780017 AAGATCAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:51780243 original size:117 final size:117
Alignment explanation
Indices: 51780037--51781002 Score: 1923
Period size: 117 Copynumber: 8.3 Consensus size: 117
51780027 AAATTATAGA
51780037 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
1 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
51780102 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
66 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
51780154 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
1 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
51780219 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
66 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
51780271 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
1 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
51780336 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
66 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
51780388 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
1 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
51780453 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
66 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
51780505 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
1 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
51780570 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
66 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
51780622 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
1 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
51780687 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
66 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
51780739 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
1 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
*
51780804 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAA
66 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
51780856 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
1 TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
51780921 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
66 TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
51780973 TGGATTTTAATATTTCTCTTAATTCATTGG
1 TGGATTTTAATATTTCTCTTAATTCATTGG
51781003 ATATCTACGT
Statistics
Matches: 847, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 847 1.00
ACGTcount: A:0.30, C:0.07, G:0.14, T:0.50
Consensus pattern (117 bp):
TGGATTTTAATATTTCTCTTAATTCATTGGTAATTTCTATGTTTTTTTAGAATTCTAAAATAGAA
TTAATTTTAGGAATTGAAGGTATTTTACTATAATTATTTAGGGTTTGTTCAC
Found at i:51788284 original size:23 final size:23
Alignment explanation
Indices: 51788255--51788300 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
51788245 CTTTCATACT
*
51788255 GTAGTAATTTTCGGGGTATTACA
1 GTAGTAATTTTCGGGATATTACA
*
51788278 GTAGTAATTTTTGGGATATTACA
1 GTAGTAATTTTCGGGATATTACA
51788301 TTCTCAATCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (23 bp):
GTAGTAATTTTCGGGATATTACA
Found at i:51800868 original size:22 final size:23
Alignment explanation
Indices: 51800820--51800867 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
51800810 TTTTGAACAA
* *
51800820 TTTAATTTTTCCTTTTATGTTCT
1 TTTAACTTTCCCTTTTATGTTCT
* *
51800843 TTTAACTTTCCCTTTTTTTTTCT
1 TTTAACTTTCCCTTTTATGTTCT
51800866 TT
1 TT
51800868 ATTTTCCATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.10, C:0.17, G:0.02, T:0.71
Consensus pattern (23 bp):
TTTAACTTTCCCTTTTATGTTCT
Found at i:51801808 original size:14 final size:15
Alignment explanation
Indices: 51801785--51801817 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
51801775 CATAAAGGGG
*
51801785 AAGAAGAAAAA-GAA
1 AAGAAAAAAAAGGAA
51801799 AAGAAAAAAAAGGAA
1 AAGAAAAAAAAGGAA
51801814 AAGA
1 AAGA
51801818 TTAAATTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (15 bp):
AAGAAAAAAAAGGAA
Found at i:51802179 original size:29 final size:31
Alignment explanation
Indices: 51802114--51802190 Score: 95
Period size: 29 Copynumber: 2.5 Consensus size: 31
51802104 TAACACTTAG
* * *
51802114 TGACTAAAATGTTACAATACGATAACATAAG
1 TGACTAAAATGTAACATTACGATAACATAAC
* *
51802145 TCACTAAAATGTAACATTTC-A-AACATAAC
1 TGACTAAAATGTAACATTACGATAACATAAC
51802174 TGACTAAAATGTAACAT
1 TGACTAAAATGTAACAT
51802191 GAGACAAACA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
29 23 0.57
30 1 0.03
31 16 0.40
ACGTcount: A:0.48, C:0.16, G:0.09, T:0.27
Consensus pattern (31 bp):
TGACTAAAATGTAACATTACGATAACATAAC
Found at i:51802209 original size:31 final size:29
Alignment explanation
Indices: 51802147--51802210 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
51802137 AACATAAGTC
** * *
51802147 ACTAAAATGTAACATTTCAAACATAACTG
1 ACTAAAATGTAACATGACAAACAAAAATG
51802176 ACTAAAATGTAACATGAGACAAACAAAAATG
1 ACTAAAATGTAACAT--GACAAACAAAAATG
51802207 ACTA
1 ACTA
51802211 TTTTAATAGT
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
29 15 0.52
31 14 0.48
ACGTcount: A:0.53, C:0.16, G:0.09, T:0.22
Consensus pattern (29 bp):
ACTAAAATGTAACATGACAAACAAAAATG
Found at i:51804122 original size:3 final size:3
Alignment explanation
Indices: 51804114--51804238 Score: 241
Period size: 3 Copynumber: 41.7 Consensus size: 3
51804104 TTTGTTTGTG
*
51804114 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT GCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
51804162 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
51804210 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
51804239 GGGAATATAA
Statistics
Matches: 120, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 120 1.00
ACGTcount: A:0.00, C:0.34, G:0.01, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:51804605 original size:21 final size:19
Alignment explanation
Indices: 51804581--51804634 Score: 56
Period size: 21 Copynumber: 2.7 Consensus size: 19
51804571 AGCCTTCAAA
51804581 ATTAATCTTATTCATATTCAT
1 ATTAATCTTATTCATATT--T
*
51804602 ATT-ATGTATATTCATATTT
1 ATTAATCT-TATTCATATTT
*
51804621 ATTAAACTTATTCA
1 ATTAATCTTATTCA
51804635 AAACTGAACT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
19 10 0.36
20 5 0.18
21 13 0.46
ACGTcount: A:0.35, C:0.11, G:0.02, T:0.52
Consensus pattern (19 bp):
ATTAATCTTATTCATATTT
Found at i:51805578 original size:126 final size:125
Alignment explanation
Indices: 51805323--51805889 Score: 692
Period size: 126 Copynumber: 4.5 Consensus size: 125
51805313 GATAAAATCA
* * * * * * *
51805323 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCACATGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
51805388 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAATGCTTC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * *
51805448 AAGCAGGATGCTTTGA-GAGAAGAATTTGTGAAATCGCGTCCTCATGGACGCGCTTTTACTACAG
1 AAGCAGGATGCTTT-ATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * * * * * * **
51805512 TTGGTCTTGCAAGAAATAATTTCGAGC-TAACGTTTTTGAACAAATAGTTTAAAAAACATTTC
65 TAGGTCCTGGAA-AAATAATTTCGA-CTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * **
51805574 AAGCAGGATGCTTTATAAGAAAAATTTGTGAATTCGCGCCCACGTGGACAAGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * * *
51805639 AGGTCTTGAAAAAATAATTTTGAGTTGAGGTTTCTGAGCAAATAGTATAAAACAACGCTGC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTTC
* * * *
51805700 AAGTAGCATGCTATT-TTAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * *
51805764 TTGGTCCTGGAAAAATAATTTTGACTTGACGTTTCTGAGCAAATAGTAT-AAAATCGCTTC
65 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
*
51805824 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
51805889 A
66 A
51805890 ACATGTTTGG
Statistics
Matches: 374, Mismatches: 60, Indels: 17
0.83 0.13 0.04
Matches are distributed among these distances:
123 2 0.01
124 63 0.17
125 99 0.26
126 207 0.55
127 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (125 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:51805782 original size:251 final size:250
Alignment explanation
Indices: 51805323--51805889 Score: 735
Period size: 251 Copynumber: 2.3 Consensus size: 250
51805313 GATAAAATCA
* * * * * * *
51805323 AAGCAGGATGATTTATCAGAAGGATTTTTGAAGTCGCGCCCACATGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
51805388 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTTTAAAAAATGCTTCAAGCA
66 AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
* *
51805453 GGATGCTTTGAGAGAAGAATTTGTGAAATCGCGTCCTCATGGACGCGCTTTTACTACAGTTGGTC
131 GCATGCTTTGAGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTACTACAGTTGGTC
* * * *
51805518 TTGCAAGAAATAATTTCGAGC-TAACGTTTTTGAACAAATAGTTTAAAAAACATTTC
196 CTGCAAGAAATAATTTCGA-CTTAACGTTTCTGAACAAATAGTAT-AAAAACACTTC
* * **
51805574 AAGCAGGATGCTTTATAAGAAAAATTTGTGAATTCGCGCCCACGTGGACAAGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * *
51805639 AGGTCTTGAAAAAATAATTTTGAGTTGAGGTTTCTGAGCAAATAGTATAAAACAACGCTGCAAGT
66 AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTGCAAGC
** * *
51805704 AGCATGCTATT-TTAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTTGG
130 AGCATGCT-TTGAGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTACTACAGTTGG
* * * * * *
51805768 TCCTGGAA-AAATAATTTTGACTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTC
194 TCCTGCAAGAAATAATTTCGACTTAACGTTTCTGAACAAATAGTATAAAAACACTTC
* *
51805824 TAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
51805889 A
66 A
51805890 ACATGTTTGG
Statistics
Matches: 272, Mismatches: 41, Indels: 7
0.85 0.13 0.02
Matches are distributed among these distances:
250 69 0.25
251 131 0.48
252 70 0.26
253 2 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (250 bp):
AAGCAGGATGCTTTATAAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
GCATGCTTTGAGAGAAGAATTTGTGAAATCGCGCCCTCATGGACGCGCTTTTACTACAGTTGGTC
CTGCAAGAAATAATTTCGACTTAACGTTTCTGAACAAATAGTATAAAAACACTTC
Found at i:51809090 original size:21 final size:21
Alignment explanation
Indices: 51809064--51810267 Score: 784
Period size: 22 Copynumber: 56.7 Consensus size: 21
51809054 CAAATTATAT
*
51809064 TTAAGGGTTAGGATTTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
51809085 TTAAGGGTTTAGGGTTTTTAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* *
51809107 TTTAGGGTTTAGGGTTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
*
51809129 TTAAGGTTTAGGGTTTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
51809150 TTAAGGGTTTAGGGTTTTTAGGTTAAGGG
1 TTAAGGG-TTAGGG--TTT---TTAA--G
*
51809179 TTAAGGGTTAAGGTTTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
* *
51809200 TTAAGGGTTTAAGGTTTTTTAGG
1 TTAAGGG-TT-AGGGTTTTTAAG
*
51809223 TTAAGGGTCTAGGGTTTTAAAG
1 TTAAGGGT-TAGGGTTTTTAAG
* *
51809245 TTAAGGTTTAGGGTTTTCAAG
1 TTAAGGGTTAGGGTTTTTAAG
* *
51809266 TTAGGGGTTAGGGTTTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
** *
51809287 TTAAGGGTTTAAAGTTTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
* *
51809309 TTAAGGGTTAAGGTTTTTCAG
1 TTAAGGGTTAGGGTTTTTAAG
**
51809330 TTAATGATTTAGGG-TTTTAAG
1 TTAA-GGGTTAGGGTTTTTAAG
* ** *
51809351 TCAAGGGTCTAAAGTTTTAAAG
1 TTAAGGGT-TAGGGTTTTTAAG
* *
51809373 TTAAGGTTTAGGGTTTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
*
51809394 TTAAGGGTTAGGGTTTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
* *
51809415 TTAAGGGTTAGTGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
*
51809436 TTAAGGGTTAGGGTTTTAAAG
1 TTAAGGGTTAGGGTTTTTAAG
*
51809457 TTAAGGGTTTAGGGTTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* *
51809479 TTAAGGGTCTATGGTTTTAAAG
1 TTAAGGGT-TAGGGTTTTTAAG
* *
51809501 TTAAGGTTTA-AGTTTTTCAAG
1 TTAAGGGTTAGGGTTTTT-AAG
*
51809522 TTAAGGGTTAGGGTTTTTAGGG
1 TTAAGGGTTAGGGTTTTTA-AG
* * *
51809544 TTTAGGGTTTAGAGTTTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
* *
51809566 TTAAAGGTTTAGGGTTTTTAAT
1 TT-AAGGGTTAGGGTTTTTAAG
* *
51809588 TTAAGAGTTTAGGGTTTTTAGG
1 TTAAG-GGTTAGGGTTTTTAAG
*
51809610 TTAAGGGTTTAGGATTTTTAAG
1 TTAAGGG-TTAGGGTTTTTAAG
*
51809632 AT-AGGAGTTTAGGG--TTT-A-
1 TTAAGG-G-TTAGGGTTTTTAAG
** *
51809650 -T--GGGTTAGTATTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
51809668 TTAAGGGTTTAAGGTTTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
*
51809690 TTAAGGGTTAGGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
51809711 TTAAGAGATTATGGGTTTTTAGG
1 TTAAG-GGTTA-GGGTTTTTAAG
* *
51809734 TTAAGGGTTTAGGATTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* *
51809756 TTAAGAGTTTA-GG-ATTT-AG
1 TTAAG-GGTTAGGGTTTTTAAG
*
51809775 ----GGGTTAGGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* ** *
51809792 TTAAGAGTTTAAGATTTTTTAGG
1 TTAAG-GGTT-AGGGTTTTTAAG
* *
51809815 TTAATGGTTTAGGGTTTTAAAG
1 TTAA-GGGTTAGGGTTTTTAAG
* * ****
51809837 TTAAGAGTTTAAGGTTTAGGGG
1 TTAAG-GGTTAGGGTTTTTAAG
* * *
51809859 TTAAAGGTTAGGGTTTTAAAT
1 TTAAGGGTTAGGGTTTTTAAG
* * *
51809880 TTAAGGGTTTAAGGTGTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
*
51809902 TTAAGGGTTAGGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
*
51809923 TTAAGAGGTTAGAGGTTTTTAGG
1 TTAAG-GGTTAG-GGTTTTTAAG
* * *
51809946 TTTAGGGTTTATGGTTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* ** * *
51809968 TAAAGTTTTATGG-TTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
* * *
51809988 TTAGGGGTTA-AG-TTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
*
51810007 TTAAGGGTTTAGGG-TTTTAAT
1 TTAAGGG-TTAGGGTTTTTAAG
*
51810028 TTAAGGGTTAGGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
51810049 TTAAGAGATTAGGGTTTTTTATG
1 TTAAG-GGTTAGGG-TTTTTAAG
* *
51810072 TTAAGGGTTTAAGGTTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
* *
51810094 TTTAAAGTTTAGGG--TTT-AG
1 -TTAAGGGTTAGGGTTTTTAAG
* *
51810113 ----GGGTTAAGGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
51810130 TTAAGGGTTTAGGGTTTTTTAT
1 TTAAGGG-TTAGGGTTTTTAAG
* *
51810152 TTAAGGGTTAGTGTTTTTAAT
1 TTAAGGGTTAGGGTTTTTAAG
* *
51810173 TTAAGAGTTTAGGGTTTTTAGG
1 TTAAG-GGTTAGGGTTTTTAAG
* *
51810195 TTAAGGGTTTAGGATTTTAAAG
1 TTAAGGG-TTAGGGTTTTTAAG
*
51810217 TTAAGGGTTAGGGTTTTTAGG
1 TTAAGGGTTAGGGTTTTTAAG
51810238 TTAA--G---GGG-TTTTAAG
1 TTAAGGGTTAGGGTTTTTAAG
51810253 TTAAGGGTTAGGGTT
1 TTAAGGGTTAGGGTT
51810268 ATGGTTTTTA
Statistics
Matches: 935, Mismatches: 172, Indels: 152
0.74 0.14 0.12
Matches are distributed among these distances:
14 14 0.01
15 14 0.01
16 14 0.01
17 5 0.01
19 19 0.02
20 37 0.04
21 317 0.34
22 386 0.41
23 105 0.11
24 4 0.00
26 3 0.00
27 4 0.00
28 5 0.01
29 8 0.01
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (21 bp):
TTAAGGGTTAGGGTTTTTAAG
Found at i:51809137 original size:43 final size:43
Alignment explanation
Indices: 51809067--51810244 Score: 747
Period size: 43 Copynumber: 27.6 Consensus size: 43
51809057 ATTATATTTA
*
51809067 AGGG-TTAGGATTTTTAAGTTAAGGGTTTAGGGTTTTTAAGTTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
* * *
51809110 AGGGTTTAGGGTTTTAAAGTTAAGGTTTAGGGTTTTTAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* *
51809153 AGGGTTTAGGGTTTTTAGGTTAAGGGTTAAGGGTTAAGGTTTTTAAGTTA
1 AGGGTTTAGGG--TTT---TTAA--GTTAAGGGTTAGGGTTTTTAAGTTT
* * *
51809203 AGGGTTTAAGGTTTTTTAGGTTAAGGGTCTAGGGTTTTAAAG-TT
1 AGGGTTT-AGGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTT
* * * * *
51809247 AAGGTTTAGGGTTTTCAAGTTAGGGGTTAGGGTTTTTAGGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
** * * * *
51809290 AGGGTTTAAAGTTTTTAATTTAAGGGTTAAGGTTTTTCAGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * ** *
51809333 ATGATTTAGGG-TTTTAAGTCAAGGGTCTAAAGTTTTAAAG-TT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTT
* * * *
51809375 AAGGTTTAGGGTTTTTAGGTTAAGGGTTAGGGTTTTTAGGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * *
51809418 AGGG-TTAGTGTTTTTAATTTAAGGGTTAGGGTTTTAAAGTTA
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * *
51809460 AGGGTTTAGGGTTTTAAAGTTAAGGGTCTATGGTTTTAAAG-TT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTT
* * *
51809503 AAGGTTTA-AGTTTTTCAAGTTAAGGGTTAGGGTTTTTAGGGTTT
1 AGGGTTTAGGGTTTTT-AAGTTAAGGGTTAGGGTTTTTA-AGTTT
* * *
51809547 AGGGTTTAGAGTTTTTAATTTAAAGGTTTAGGGTTTTTAA-TTT
1 AGGGTTTAGGGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTTT
* * * *
51809590 AAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTTAAG-AT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
**
51809634 AGGAGTTTAGGG--TTT-A--T--GGGTTAGTATTTTTAA-TTT
1 AGG-GTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* *
51809670 AAGGGTTTAAGGTTTTTAATTTAAGGGTTAGGGTTTTTAA-TTT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * * * *
51809713 AAGAGATTATGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGTTA
1 -AGGGTTTA-GGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
* *
51809759 AGAGTTTA-GG-ATTT-AG----GGGTTAGGGTTTTTAA-TTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* ** * * * *
51809794 AAGAGTTTAAGATTTTTTAGGTTAATGGTTTAGGGTTTTAAAGTTA
1 -AGGGTTT-AGGGTTTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTT
* * **** * *
51809840 AGAGTTTAAGGTTTAGGGGTTAAAGGTTAGGG-TTTTAAATTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * *
51809882 AAGGGTTTAAGGTGTTTAATTTAAGGGTTAGGGTTTTTAA-TTT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * * *
51809925 AAGAGG-TTAGAGGTTTTTAGGTTTAGGGTTTATGGTTTTAAAG-TA
1 -AG-GGTTTAG-GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
* * * * * *
51809970 AAGTTTTATGG-TTTTAGGTTAGGGGTTA-AG-TTTTAA-TTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
*
51810009 AAGGGTTTAGGG-TTTTAATTTAAGGGTTAGGGTTTTTAA-TTT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * * *
51810051 AAGAGATTAGGGTTTTTTATGTTAAGGGTTTAAGGTTTTAAAGTTT
1 -AGGGTTTAGGG-TTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
** *
51810097 AAAGTTTAGGG--TTT-AG----GGGTTAAGGTTTTTAA-TTT
1 AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * *
51810132 AAGGGTTTAGGGTTTTTTATTTAAGGGTTAGTGTTTTTAA-TTT
1 -AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
* * * * *
51810175 AAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGTTA
1 -AGGGTTTAGGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTT
*
51810220 AGGG-TTAGGGTTTTTAGGTTAAGGG
1 AGGGTTTAGGGTTTTTAAGTTAAGGG
51810245 GTTTTAAGTT
Statistics
Matches: 892, Mismatches: 170, Indels: 146
0.74 0.14 0.12
Matches are distributed among these distances:
35 5 0.01
36 59 0.07
37 13 0.01
38 6 0.01
39 12 0.01
40 24 0.03
41 7 0.01
42 141 0.16
43 294 0.33
44 172 0.19
45 110 0.12
46 10 0.01
48 3 0.00
49 3 0.00
50 30 0.03
51 3 0.00
ACGTcount: A:0.25, C:0.01, G:0.29, T:0.45
Consensus pattern (43 bp):
AGGGTTTAGGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTT
Found at i:51809727 original size:80 final size:80
Alignment explanation
Indices: 51809580--51809728 Score: 201
Period size: 80 Copynumber: 1.9 Consensus size: 80
51809570 AGGTTTAGGG
* * * *
51809580 TTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTTAAGATAGGAGTTTAGG
1 TTTTTAATTTAAGAGTTTAAGGTTTTTAAGTTAAGGGTTTAGGATTTTTAAGATAAGAGATTAGG
51809645 GTTTATGGGTTAGTA
66 GTTTATGGGTTAGTA
* * * **
51809660 TTTTTAATTTAAGGGTTTAAGGTTTTTAATTTAAGGG-TTAGGGTTTTTAATTTAAGAGATTATG
1 TTTTTAATTTAAGAGTTTAAGGTTTTTAAGTTAAGGGTTTAGGATTTTTAAGATAAGAGATTA-G
51809724 GGTTT
65 GGTTT
51809729 TTAGGTTAAG
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
79 20 0.34
80 39 0.66
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.48
Consensus pattern (80 bp):
TTTTTAATTTAAGAGTTTAAGGTTTTTAAGTTAAGGGTTTAGGATTTTTAAGATAAGAGATTAGG
GTTTATGGGTTAGTA
Found at i:51809730 original size:124 final size:124
Alignment explanation
Indices: 51809179--51809853 Score: 467
Period size: 128 Copynumber: 5.3 Consensus size: 124
51809169 AGGTTAAGGG
* * * * * * * *
51809179 TTAAGGGTTAAGGTTTTTAAGTTAAGGGTTTAAGGTTTTTTAGGTTAAGGGTCTAGGGTTTTAAA
1 TTAAGGTTTAGGGTTTTTAATTTAAGAGATT-AGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAA
* * * **
51809244 GTTAAG-GTTTAGGGTTTTCAAGTTAGGGGTTAGGGTTTTTAGGTTAAGGGTTTAA-AGTTTTTA
65 GATAAGAGTTTA-GG------ATTTAGGGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTTA
51809307 AT
123 AT
* * * * * * * * *
51809309 TTAAGGGTTAAGGTTTTTCAGTTAATGA-TTTAGGG-TTTTAAGTCAAGGGTCTA-AAGTTTTAA
1 TTAAGGTTTAGGGTTTTTAATTTAA-GAGATTAGGGTTTTTAGGTTAAGGGTTTAGGA-TTTTAA
* * * ** *
51809371 AGTTAAG-GTTTAGGGTTTTTAGGTTAAGGGTTAGGGTTTTTAGGTTAAGGG-TT-AGTGTTTTT
64 AGATAAGAGTTTA-GG-ATTTA-G----GGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTT
51809433 AAT
122 AAT
* * * * * * * *
51809436 TTAAGGGTTAGGGTTTTAAAGTTAAGGGTTTAGGGTTTTAAAGTTAAGGGTCTATGG-TTTTAAA
1 TTAAGGTTTAGGGTTTTTAATTTAAGAGATTAGGGTTTTTAGGTTAAGGGTTTA-GGATTTTAAA
* ** * *
51809500 GTTAAG-GTTTAAGTTTTTCAAGTTAAGGGTTAGGGTTTTTAGGGTTT-AGGGTTT-AGAGTTTT
65 GATAAGAGTTT-AGGATTT--AG----GGGTTAGGATTTTTA--ATTTAAGGGTTTAAGAGTTTT
51809562 TAAT
121 TAAT
* *
51809566 TTAAAGGTTTAGGGTTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTTAA
1 TT-AAGGTTTAGGGTTTTTAATTTAAGAGATTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAA
* * * *
51809631 GATAGGAGTTTAGGGTTTATGGGTTAGTATTTTTAATTTAAGGGTTTAAG-GTTTTTAAT
65 GATAAGAGTTTAGGATTTAGGGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTTAAT
*
51809690 TTAAGGGTTAGGGTTTTTAATTTAAGAGATTATGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAA
1 TTAAGGTTTAGGGTTTTTAATTTAAGAGATTA-GGGTTTTTAGGTTAAGGGTTTAGGATTTTAAA
* * * * **
51809755 GTTAAGAGTTTAGGATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAAGATTTTTTAGG
65 GATAAGAGTTTAGGATTTAGGGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTTAAT
* * * *
51809815 TTAATGGTTTAGGGTTTTAAAGTTAAGAGTTTAAGGTTT
1 TTAA-GGTTTAGGGTTTTTAATTTAAGAGATTAGGGTTT
51809854 AGGGGTTAAA
Statistics
Matches: 464, Mismatches: 55, Indels: 57
0.81 0.10 0.10
Matches are distributed among these distances:
123 34 0.07
124 93 0.20
125 30 0.06
126 26 0.06
127 44 0.09
128 115 0.25
129 10 0.02
130 47 0.10
131 61 0.13
132 4 0.01
ACGTcount: A:0.26, C:0.01, G:0.28, T:0.45
Consensus pattern (124 bp):
TTAAGGTTTAGGGTTTTTAATTTAAGAGATTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTAAAG
ATAAGAGTTTAGGATTTAGGGGTTAGGATTTTTAATTTAAGGGTTTAAGAGTTTTTAAT
Found at i:51809785 original size:81 final size:79
Alignment explanation
Indices: 51809688--51810185 Score: 339
Period size: 81 Copynumber: 6.0 Consensus size: 79
51809678 AAGGTTTTTA
* *
51809688 ATTTAAGGGTTAGGGTTTTTAATTTAAGAGATTATGGGTTTTTAGGTTAAGGGTTTAGGATTTTA
1 ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTA-GGGTTTTTAGGTTAAGGGTTTAGG-TTTTA
51809753 AAGTTAAGAGTTTAGG
64 AAGTTAAGAGTTTAGG
** *
51809769 ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAAGATTTTTTAGGTTAATGGTTTAGGGTTTTA
1 ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTT-AGGGTTTTTAGGTTAAGGGTTTA-GGTTTTA
51809834 AAGTTAAGAGTTTAAGG
64 AAGTTAAGAGTTT-AGG
* * * * **
51809851 -TTTAGGGGTTAAAGGTTAGGGTTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGGG-TTAGG
1 ATTTA--GG-----GGTTAGGGTTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTA-G
* * *
51809914 GTTTTTAATTTAAGAGGTTAGAGG
58 GTTTTAAAGTTAAGA-GTT-TAGG
* * *** * * *
51809938 TTTTTA-GGTTTAGGGTTTATGGTTTTAAAGTAAAGTTTTATGG-TTTTAGGTT-AGGGGTTAAG
1 -ATTTAGGGGTTAGGGTTT-TTAATTT-AAG---AG-TTTAGGGTTTTTAGGTTAAGGGTTTAGG
* *
51810000 TTTT-AATTTAAGGGTTTAGGG
59 TTTTAAAGTTAAGAGTTTA-GG
* * *
51810021 TTTTAATTTAAGGGTTAGGGTTTTTAATTTAAGAGATTAGGGTTTTTTATGTTAAGGGTTTAAGG
1 -----ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAGGG-TTTTTAGGTTAAGGGTTT-AGG
51810086 TTTTAAAGTTTAA-AGTTTAGG
59 TTTTAAAG-TTAAGAGTTTAGG
* * * * *
51810107 GTTTAGGGGTTAAGGTTTTTAATTTAAGGGTTTAGGGTTTTTTA-TTTAAGGG-TTAGTGTTTTT
1 ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAGGG-TTTTTAGGTTAAGGGTTTAG-GTTTTA
*
51810170 AATTTAAGAGTTTAGG
64 AAGTTAAGAGTTTAGG
51810186 GTTTTTAGGT
Statistics
Matches: 332, Mismatches: 50, Indels: 72
0.73 0.11 0.16
Matches are distributed among these distances:
78 6 0.02
79 17 0.05
80 7 0.02
81 121 0.36
82 16 0.05
83 12 0.04
84 16 0.05
85 15 0.05
86 40 0.12
87 39 0.12
88 39 0.12
89 4 0.01
ACGTcount: A:0.26, C:0.00, G:0.28, T:0.46
Consensus pattern (79 bp):
ATTTAGGGGTTAGGGTTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGTTTTAAA
GTTAAGAGTTTAGG
Found at i:51809796 original size:36 final size:36
Alignment explanation
Indices: 51809728--51809861 Score: 101
Period size: 36 Copynumber: 3.5 Consensus size: 36
51809718 ATTATGGGTT
* *
51809728 TTTAGG-TTAAGGGTTTAGGATTTTAAAGTTAAGAG
1 TTTAGGATTTAGGGGTTAGGATTTTAAAGTTAAGAG
* * *
51809763 TTTAGGATTTAGGGGTTAGGGTTTTTAATTTAAGAG
1 TTTAGGATTTAGGGGTTAGGATTTTAAAGTTAAGAG
* *
51809799 TTTAAGATTTTTTAGGTTAATGGTTTAGGGTTTTAAAGTTAAGAG
1 TTTAGGA---TTTAGG-----GG-TTAGGATTTTAAAGTTAAGAG
51809844 TTTAAGG-TTTAGGGGTTA
1 TTT-AGGATTTAGGGGTTA
51809862 AAGGTTAGGG
Statistics
Matches: 79, Mismatches: 9, Indels: 21
0.72 0.08 0.19
Matches are distributed among these distances:
35 6 0.08
36 33 0.42
37 2 0.03
39 6 0.08
42 6 0.08
44 2 0.03
45 22 0.28
46 2 0.03
ACGTcount: A:0.28, C:0.00, G:0.28, T:0.44
Consensus pattern (36 bp):
TTTAGGATTTAGGGGTTAGGATTTTAAAGTTAAGAG
Found at i:51809883 original size:212 final size:202
Alignment explanation
Indices: 51809574--51809975 Score: 565
Period size: 212 Copynumber: 1.9 Consensus size: 202
51809564 ATTTAAAGGT
* * *
51809574 TTAGGGTTTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGATTTTTAAGATAGGAG
1 TTAGGGTTTTTAATTTAAGAGTTTAGAGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGATAAGAG
* * * *
51809639 TTTAGGGTTTATGGGTTAGTATTTTTAATTTAAGGGTTTAAGGTTTTTAATTTAAGGGTTAGGGT
66 TTTAAGGTTTAGGGGTTAGTATTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGGGTTAGGGT
51809704 TTTTAATTTAAGAGATTATG-GGTTTTTAGGTTAAGGGTTTA-GGATTTTAAAGTTAAGAGTTTA
131 TTTTAATTTAAGAGATTA-GAGGTTTTTAGGTTAAGGGTTTATGG-TTTTAAAG-TAA-AGTTTA
51809767 GGATTTAGGGG
192 GGATTTAGGGG
* * * *
51809778 TTAGGGTTTTTAATTTAAGAGTTTAAGATTTTTTAGGTTAATGGTTTAGGGTTTTAAAGTTAAGA
1 TTAGGGTTTTTAATTTAAGAGTTT-AGAGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGATAAGA
51809843 GTTTAAGGTTTAGGGGTTAAAGGTTAGGGTTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGG
65 GTTTAAGGTTTAGGGGTT--A-G-TA---TTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGG
* *
51809908 GTTAGGGTTTTTAATTTAAGAGGTTAGAGGTTTTTAGGTTTAGGGTTTATGGTTTTAAAGTAAAG
123 GTTAGGGTTTTTAATTTAAGAGATTAGAGGTTTTTAGGTTAAGGGTTTATGGTTTTAAAGTAAAG
51809973 TTT
188 TTT
51809976 TATGGTTTTA
Statistics
Matches: 175, Mismatches: 13, Indels: 14
0.87 0.06 0.07
Matches are distributed among these distances:
204 24 0.14
205 49 0.28
207 1 0.01
208 1 0.01
209 2 0.01
210 5 0.03
211 4 0.02
212 87 0.50
213 2 0.01
ACGTcount: A:0.27, C:0.00, G:0.28, T:0.46
Consensus pattern (202 bp):
TTAGGGTTTTTAATTTAAGAGTTTAGAGTTTTTAGGTTAAGGGTTTAGGATTTTAAAGATAAGAG
TTTAAGGTTTAGGGGTTAGTATTTTAAATTTAAGGGTTTAAGGTGTTTAATTTAAGGGTTAGGGT
TTTTAATTTAAGAGATTAGAGGTTTTTAGGTTAAGGGTTTATGGTTTTAAAGTAAAGTTTAGGAT
TTAGGGG
Found at i:51810120 original size:36 final size:36
Alignment explanation
Indices: 51810075--51810146 Score: 101
Period size: 36 Copynumber: 2.0 Consensus size: 36
51810065 TTTTATGTTA
*
51810075 AGGGTTTAAGGTTTTAAAGTTTAA-AGTTTAGGGTTT
1 AGGGGTTAAGGTTTTAAA-TTTAAGAGTTTAGGGTTT
* *
51810111 AGGGGTTAAGGTTTTTAATTTAAGGGTTTAGGGTTT
1 AGGGGTTAAGGTTTTAAATTTAAGAGTTTAGGGTTT
51810147 TTTATTTAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
35 5 0.16
36 27 0.84
ACGTcount: A:0.25, C:0.00, G:0.31, T:0.44
Consensus pattern (36 bp):
AGGGGTTAAGGTTTTAAATTTAAGAGTTTAGGGTTT
Found at i:51810136 original size:29 final size:29
Alignment explanation
Indices: 51810061--51810143 Score: 80
Period size: 29 Copynumber: 2.8 Consensus size: 29
51810051 AAGAGATTAG
* **
51810061 GGTTTTTTATGTTAAGGGTTTAAGGTTTTAA
1 GGTTTTTAAT-TTAAGGGTTT-AGGGGTTAA
* *
51810092 AG-TTTAAAGTTT-AGGGTTTAGGGGTTAA
1 GGTTTTTAA-TTTAAGGGTTTAGGGGTTAA
51810120 GGTTTTTAATTTAAGGGTTTAGGG
1 GGTTTTTAATTTAAGGGTTTAGGG
51810144 TTTTTTATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
28 11 0.26
29 23 0.55
30 6 0.14
31 2 0.05
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (29 bp):
GGTTTTTAATTTAAGGGTTTAGGGGTTAA
Found at i:51810248 original size:16 final size:15
Alignment explanation
Indices: 51810226--51810259 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
51810216 GTTAAGGGTT
* *
51810226 AGGGTTTTTAGGTTA
1 AGGGGTTTTAAGTTA
51810241 AGGGGTTTTAAGTTA
1 AGGGGTTTTAAGTTA
51810256 AGGG
1 AGGG
51810260 TTAGGGTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (15 bp):
AGGGGTTTTAAGTTA
Found at i:51810249 original size:15 final size:14
Alignment explanation
Indices: 51810222--51810295 Score: 64
Period size: 14 Copynumber: 5.3 Consensus size: 14
51810212 TAAAGTTAAG
51810222 GGTT-AGGGTTTTTA
1 GGTTAAGGG-TTTTA
51810236 GGTTAAGGGGTTTTA
1 GGTTAA-GGGTTTTA
*
51810251 AGTTAAGGG--TTA
1 GGTTAAGGGTTTTA
* *
51810263 GGGTTATGGTTTTTA
1 -GGTTAAGGGTTTTA
*
51810278 GGTTAAGGGTTTAA
1 GGTTAAGGGTTTTA
51810292 GGTT
1 GGTT
51810296 TGTCAATTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
12 3 0.06
13 6 0.12
14 22 0.46
15 14 0.29
16 3 0.06
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.43
Consensus pattern (14 bp):
GGTTAAGGGTTTTA
Found at i:51810261 original size:36 final size:39
Alignment explanation
Indices: 51810123--51810267 Score: 127
Period size: 43 Copynumber: 3.6 Consensus size: 39
51810113 GGGTTAAGGT
* * *
51810123 TTTTAATTTAAGGGTTTAGGGTTTTTTA-TTTAAGGGTTAGTGT
1 TTTTAAGTTAAGGG-TTAGGG-TTTTTAGGTTAAGGG-T-G-GA
* *
51810166 TTTTAATTTAAGAGTTTAGGGTTTTTAGGTTAAGGGTTTAGGA
1 TTTTAAGTTAAG-GGTTAGGGTTTTTAGGTTAAGGG--T-GGA
51810209 TTTTAAAGTTAAGGGTTAGGGTTTTTAGGTTAA-GG-GG-
1 TTTT-AAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTGGA
51810246 TTTTAAGTTAAGGGTTAGGGTT
1 TTTTAAGTTAAGGGTTAGGGTT
51810268 ATGGTTTTTA
Statistics
Matches: 93, Mismatches: 5, Indels: 15
0.82 0.04 0.13
Matches are distributed among these distances:
36 18 0.19
37 4 0.04
38 2 0.02
42 8 0.09
43 49 0.53
44 12 0.13
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (39 bp):
TTTTAAGTTAAGGGTTAGGGTTTTTAGGTTAAGGGTGGA
Found at i:51810263 original size:27 final size:27
Alignment explanation
Indices: 51810236--51810288 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
51810226 AGGGTTTTTA
51810236 GGTTAAGGGGTTTTAAGTTAAGGGTTAG
1 GGTT-AGGGGTTTTAAGTTAAGGGTTAG
* * *
51810264 GGTTATGGTTTTTAGGTTAAGGGTT
1 GGTTAGGGGTTTTAAGTTAAGGGTT
51810289 TAAGGTTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.42
Consensus pattern (27 bp):
GGTTAGGGGTTTTAAGTTAAGGGTTAG
Found at i:51812518 original size:51 final size:51
Alignment explanation
Indices: 51812463--51812560 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
51812453 AATTATTTAA
51812463 AAATAGGGATTTAAGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTTAAGAGAAATTTAGA-AGGAACTTGAGAGCAAATTGAAAAT
* * * *
51812514 AAATATGGATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAAATTGA
1 AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGA
51812561 GAGGGAATTT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.46, C:0.03, G:0.24, T:0.27
Consensus pattern (51 bp):
AAATAGGGATTTAAGAGAAATTTAGAAGGAACTTGAGAGCAAATTGAAAAT
Found at i:51812536 original size:11 final size:11
Alignment explanation
Indices: 51812522--51812598 Score: 63
Period size: 11 Copynumber: 6.9 Consensus size: 11
51812512 ATAAATATGG
51812522 ATTTGAGAGAA
1 ATTTGAGAGAA
*
51812533 ATTTTGA-AGGA
1 A-TTTGAGAGAA
51812544 ATTTGAGAGCAA
1 ATTTGAGAG-AA
*
51812556 A-TTGAGAGGGA
1 ATTTGAGA-GAA
51812567 ATTT-AGAAGAA
1 ATTTGAG-AGAA
51812578 A-TTGAGAGAAA
1 ATTTGAGAG-AA
51812589 ATTTGAGAGA
1 ATTTGAGAGA
51812599 GGATTAGTTT
Statistics
Matches: 53, Mismatches: 4, Indels: 18
0.71 0.05 0.24
Matches are distributed among these distances:
10 9 0.17
11 26 0.49
12 18 0.34
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:51812547 original size:22 final size:22
Alignment explanation
Indices: 51812522--51812598 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
51812512 ATAAATATGG
**
51812522 ATTTGAGAGAAATTTTGAAGGA
1 ATTTGAGAGAAATTGAGAAGGA
*
51812544 ATTTGAGAGCAAATTGAGAGGGA
1 ATTTGAGAG-AAATTGAGAAGGA
*
51812567 ATTT-AGAAGAAATTGAG-AGAAA
1 ATTTGAG-AGAAATTGAGAAG-GA
51812589 ATTTGAGAGA
1 ATTTGAGAGA
51812599 GGATTAGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
21 1 0.02
22 27 0.59
23 18 0.39
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (22 bp):
ATTTGAGAGAAATTGAGAAGGA
Found at i:51812561 original size:33 final size:33
Alignment explanation
Indices: 51812522--51812598 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
51812512 ATAAATATGG
* * *
51812522 ATTTGAGAGAAATTTTGAAGGAATTTGAGAGCAA
1 ATTTGAGAGAAATTTAGAA-GAAATTGAGAGAAA
*
51812556 A-TTGAGAGGGAATTTAGAAGAAATTGAGAGAAA
1 ATTTGAGA-GAAATTTAGAAGAAATTGAGAGAAA
51812589 ATTTGAGAGA
1 ATTTGAGAGA
51812599 GGATTAGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
33 20 0.56
34 16 0.44
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (33 bp):
ATTTGAGAGAAATTTAGAAGAAATTGAGAGAAA
Found at i:51814032 original size:25 final size:24
Alignment explanation
Indices: 51814004--51814056 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
51813994 GTTAAGTTGT
51814004 ATAATATTTAAATAATTTAATATAA
1 ATAATATTT-AATAATTTAATATAA
* *
51814029 ATAATCTTTAATTATTTAATATAA
1 ATAATATTTAATAATTTAATATAA
51814053 ATAA
1 ATAA
51814057 AAACATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (24 bp):
ATAATATTTAATAATTTAATATAA
Found at i:51815798 original size:38 final size:35
Alignment explanation
Indices: 51815720--51815799 Score: 90
Period size: 39 Copynumber: 2.2 Consensus size: 35
51815710 TTCTTTTATG
* *
51815720 TTCTCTTAGCTTTCCTTTTTTTTCTTCATTTTCCA
1 TTCTCTTAGCTTTCCTTTTTTTTCTCCATTCTCCA
*
51815755 TTCTCTTATGCTTTTCCCTCTTTTTTTCTCCCTTCTCCA
1 TTCTCTTA-GC-TTT-CCT-TTTTTTTCTCCATTCTCCA
51815794 -TCTCTT
1 TTCTCTT
51815800 TTAACATGGT
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
35 8 0.21
36 2 0.05
37 3 0.08
38 9 0.24
39 16 0.42
ACGTcount: A:0.06, C:0.31, G:0.03, T:0.60
Consensus pattern (35 bp):
TTCTCTTAGCTTTCCTTTTTTTTCTCCATTCTCCA
Found at i:51818076 original size:43 final size:44
Alignment explanation
Indices: 51817971--51818083 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 44
51817961 TGTGTTGTCG
** **
51817971 TGTAAGACCACATCTGGGACGTTGGCATCGACTTGTGATTTATG
1 TGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGATTTACA
51818015 TGTAAGATCC-TGTCTGGGACAG-TGGCATCGA-TATGTGA-TTACA
1 TGTAAGA-CCATGTCTGGGAC-GTTGGCATCGACT-TGTGATTTACA
*
51818058 TGTAAGACCATGTCTGGGACGATGGC
1 TGTAAGACCATGTCTGGGACGTTGGC
51818084 GTTGTACGAA
Statistics
Matches: 60, Mismatches: 4, Indels: 11
0.80 0.05 0.15
Matches are distributed among these distances:
42 3 0.05
43 25 0.42
44 29 0.48
45 3 0.05
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.29
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACGTTGGCATCGACTTGTGATTTACA
Found at i:51818739 original size:19 final size:19
Alignment explanation
Indices: 51818715--51818768 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
51818705 AATCTTCAAG
51818715 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
51818734 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
51818753 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
51818769 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:51818744 original size:36 final size:36
Alignment explanation
Indices: 51818704--51818775 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
51818694 TATGGAAACA
51818704 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
51818740 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
51818776 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:51818759 original size:38 final size:40
Alignment explanation
Indices: 51818715--51818791 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
51818705 AATCTTCAAG
51818715 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
51818753 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
51818792 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:51819015 original size:23 final size:23
Alignment explanation
Indices: 51818971--51819015 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
51818961 TCTTATTTTG
* *
51818971 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
51818994 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
51819016 CAAATCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:51820703 original size:23 final size:23
Alignment explanation
Indices: 51820673--51820996 Score: 342
Period size: 23 Copynumber: 13.8 Consensus size: 23
51820663 TTTGATTCAA
51820673 GTCCAATTTGGTGTATAAATGCT
1 GTCCAATTTGGTGTATAAATGCT
*
51820696 GTCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATAAATGCT
* * *
51820719 GTCCAATTTTAGTGTAAAAATCCT
1 GTCCAA-TTTGGTGTATAAATGCT
* * *
51820743 ATCCAATTTGGTATATATATGCT
1 GTCCAATTTGGTGTATAAATGCT
* *
51820766 GCCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATAAATGCT
*
51820789 GTCCAATTTTGGTGTAAAAATGCT
1 GTCCAA-TTTGGTGTATAAATGCT
* * * *
51820813 GCCCAATTTGGTGTCTATATGCA
1 GTCCAATTTGGTGTATAAATGCT
* *
51820836 CTCCAATTTTGGTGTAAAAATGCT
1 GTCCAA-TTTGGTGTATAAATGCT
* *
51820860 GTCCAATTTGATATATATATATGCT
1 GTCCAATTTGGTGTATA-A-ATGCT
* *
51820885 GCCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATAAATGCT
*
51820908 GTCCAATTTTGGTGTACAAATGCT
1 GTCCAA-TTTGGTGTATAAATGCT
* *
51820932 GTCCAATTTGGTGTTTATATGCT
1 GTCCAATTTGGTGTATAAATGCT
** *
51820955 GTCCAAATGGGGTGTATAAATGTT
1 GTCC-AATTTGGTGTATAAATGCT
*
51820979 GTCCAATTTGATGTATAA
1 GTCCAATTTGGTGTATAA
51820997 GAGCTGTTCA
Statistics
Matches: 244, Mismatches: 50, Indels: 14
0.79 0.16 0.05
Matches are distributed among these distances:
23 129 0.53
24 96 0.39
25 19 0.08
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.40
Consensus pattern (23 bp):
GTCCAATTTGGTGTATAAATGCT
Found at i:51820748 original size:47 final size:46
Alignment explanation
Indices: 51820673--51820995 Score: 358
Period size: 47 Copynumber: 6.9 Consensus size: 46
51820663 TTTGATTCAA
51820673 GTCCAATTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
* * * * *
51820719 GTCCAATTTTAGTGTAAAAATCCTATCCAATTTGGTATATATATGCT
1 GTCCAA-TTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
* * * *
51820766 GCCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAAAATGCT
1 GTCCAATTTGGTGTATAAATGCTGTCCAA-TTTGGTGTATATATGCT
* * * ** * *
51820813 GCCCAATTTGGTGTCTATATGCACTCCAATTTTGGTGTAAAAATGCT
1 GTCCAATTTGGTGTATAAATGCTGTCCAA-TTTGGTGTATATATGCT
* * *
51820860 GTCCAATTTGATATATATATATGCTGCCCAATTTGGTGTATATATGCT
1 GTCCAATTTGGTGTATA-A-ATGCTGTCCAATTTGGTGTATATATGCT
* *
51820908 GTCCAATTTTGGTGTACAAATGCTGTCCAATTTGGTGTTTATATGCT
1 GTCCAA-TTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
** * *
51820955 GTCCAAATGGGGTGTATAAATGTTGTCCAATTTGATGTATA
1 GTCC-AATTTGGTGTATAAATGCTGTCCAATTTGGTGTATA
51820996 AGAGCTGTTC
Statistics
Matches: 233, Mismatches: 38, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
46 24 0.10
47 169 0.73
48 24 0.10
49 16 0.07
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (46 bp):
GTCCAATTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCT
Found at i:51820765 original size:70 final size:71
Alignment explanation
Indices: 51820675--51820940 Score: 340
Period size: 70 Copynumber: 3.8 Consensus size: 71
51820665 TGATTCAAGT
* *
51820675 CCAATTTGGTGTATAAATGCTGTCCAA-TTTGGTGTATATATGCTGTCCAATTTTAGTGTAAAAA
1 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTTTAGTGTAAAAA
* **
51820739 TCCTAT
66 TGCTGC
* * * *
51820745 CCAATTTGGTATATATATGCTGCCCAA-TTTGGTGTATATATGCTGTCCAATTTTGGTGTAAAAA
1 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTTTAGTGTAAAAA
51820809 TGCTGC
66 TGCTGC
* ** * * *
51820815 CCAATTTGGTGTCTATATGCACTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGATA-TATATA
1 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTT--TAGTGTAAA
*
51820879 TATGCTGC
64 AATGCTGC
*
51820887 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTACAAATGCTGTCCAATTT
1 CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTT
51820941 GGTGTTTATA
Statistics
Matches: 171, Mismatches: 22, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
70 85 0.50
71 24 0.14
72 61 0.36
73 1 0.01
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.39
Consensus pattern (71 bp):
CCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTATAAATGCTGTCCAATTTTAGTGTAAAAA
TGCTGC
Found at i:51820920 original size:119 final size:119
Alignment explanation
Indices: 51820673--51820995 Score: 481
Period size: 119 Copynumber: 2.7 Consensus size: 119
51820663 TTTGATTCAA
* *
51820673 GTCCAA-TTTGGTGTATAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTAGTGTAAA
1 GTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAA
* *
51820737 AATCCTATCCAATTTG--GTATATATATGCTGCCCAATTTGGTGTATATATGCT
66 AATGCTGTCCAATTTGATGTATATATATGCTGCCCAATTTGGTGTATATATGCT
* * **
51820789 GTCCAATTTTGGTGTAAAAATGCTGCCCAATTTGGTGTCTATATGCACTCCAATTTTGGTGTAAA
1 GTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAA
*
51820854 AATGCTGTCCAATTTGATATATATATATGCTGCCCAATTTGGTGTATATATGCT
66 AATGCTGTCCAATTTGATGTATATATATGCTGCCCAATTTGGTGTATATATGCT
* * * ** *
51820908 GTCCAATTTTGGTGTACAAATGCTGTCCAATTTGGTGTTTATATGCTGTCCAAATGGGGTGTATA
1 GTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAA
*
51820973 AATGTTGTCCAATTTGATGTATA
66 AATGCTGTCCAATTTGATGTATA
51820996 AGAGCTGTTC
Statistics
Matches: 184, Mismatches: 20, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
116 6 0.03
117 66 0.36
119 112 0.61
ACGTcount: A:0.26, C:0.15, G:0.20, T:0.40
Consensus pattern (119 bp):
GTCCAATTTTGGTGTAAAAATGCTGTCCAATTTGGTGTATATATGCTGTCCAATTTTGGTGTAAA
AATGCTGTCCAATTTGATGTATATATATGCTGCCCAATTTGGTGTATATATGCT
Found at i:51821812 original size:85 final size:84
Alignment explanation
Indices: 51821719--51821923 Score: 236
Period size: 82 Copynumber: 2.5 Consensus size: 84
51821709 GTTTACAAAC
* * * * * *
51821719 AAAAACGCCGCTAAAGACCATGTTCTTTCGCGGCG-TTTGTAAAAAAAACGCCGCTAAATACCAT
1 AAAAACGCCGCTAAAGACCACGTTCTTTAGAGGCGCTTAG--AAAAAAACGCCGCTAAAGAACAT
51821783 GTTCTTTAGCGGCGCTTGTAA
64 GTTCTTTAGCGGCGCTTGTAA
51821804 AAAAACGCCGCTAAAGACCACGTTCTTTAGAGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
1 AAAAACGCCGCTAAAGACCACGTTCTTTAGAGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
* * **
51821869 TCTTTAGTGGC-ATT-TTT
66 TCTTTAGCGGCGCTTGTAA
* * * * *
51821886 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
1 AAAAACGCCGCTAAAGACCACGTTCTTTAGAGGCGCTT
51821924 TTATACAAAA
Statistics
Matches: 104, Mismatches: 15, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
82 34 0.33
83 2 0.02
84 33 0.32
85 32 0.31
86 3 0.03
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.25
Consensus pattern (84 bp):
AAAAACGCCGCTAAAGACCACGTTCTTTAGAGGCGCTTAGAAAAAAACGCCGCTAAAGAACATGT
TCTTTAGCGGCGCTTGTAA
Found at i:51821829 original size:42 final size:42
Alignment explanation
Indices: 51821719--51821938 Score: 248
Period size: 42 Copynumber: 5.2 Consensus size: 42
51821709 GTTTACAAAC
* *
51821719 AAAAACGCCGCTAAAGACCATGTTCTTTCGCGGCGTTTGTAAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTGT-AA
*
51821762 AAAAACGCCGCTAAATACCATGTTCTTTAGCGGCGCTTGTAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTGTAA
* *
51821804 AAAAACGCCGCTAAAGACCACGTTCTTTAGAGGCGCTTAG-AA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTT-GTAA
* * * **
51821846 AAAAACGCCGCTAAAGAACATGTTCTTTAGTGGC-ATT-TTT
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTGTAA
* * * * *
51821886 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTGTA-A
51821929 CAAAAACGCC
1 -AAAAACGCC
51821939 ACTATTTTTG
Statistics
Matches: 153, Mismatches: 18, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
40 32 0.21
41 4 0.03
42 71 0.46
43 38 0.25
44 8 0.05
ACGTcount: A:0.33, C:0.23, G:0.19, T:0.25
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTGTAA
Found at i:51822015 original size:14 final size:14
Alignment explanation
Indices: 51821992--51822025 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
51821982 GCCCTCCTGT
*
51821992 AGCAAAATTTCAAA
1 AGCAACATTTCAAA
51822006 AGCAACATTTCAAA
1 AGCAACATTTCAAA
51822020 AGCAAC
1 AGCAAC
51822026 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.53, C:0.21, G:0.09, T:0.18
Consensus pattern (14 bp):
AGCAACATTTCAAA
Found at i:51822317 original size:21 final size:21
Alignment explanation
Indices: 51822249--51822319 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
51822239 TTTTGCTCTG
* *
51822249 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
51822270 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
51822291 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
51822312 CTCTGCTT
1 CTCTGCTT
51822320 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:51827793 original size:18 final size:18
Alignment explanation
Indices: 51827770--51827908 Score: 65
Period size: 18 Copynumber: 8.0 Consensus size: 18
51827760 AATTGCAATG
51827770 GTAAGTTATGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
51827788 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
51827806 GTAAGTTAAATGTAAG-T-T
1 GTAAGTT--ATGTAAGTTAT
*
51827824 GTAAGTTAT-TATGTATTAT
1 GTAAGTTATGTAAG--TTAT
51827843 GTAAG-T-TGTAAGTTAAAT
1 GTAAGTTATGTAAGTT--AT
*
51827861 GT-A-TTGTGTAAG-T-T
1 GTAAGTTATGTAAGTTAT
51827875 GTAAGTTAAATGT-A-TTAT
1 GTAAGTT--ATGTAAGTTAT
51827893 GTAAG-T-TGTAAGTTAT
1 GTAAGTTATGTAAGTTAT
51827909 AATGTATTAT
Statistics
Matches: 97, Mismatches: 3, Indels: 44
0.67 0.02 0.31
Matches are distributed among these distances:
14 6 0.06
15 5 0.05
16 10 0.10
17 7 0.07
18 56 0.58
19 9 0.09
20 4 0.04
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.45
Consensus pattern (18 bp):
GTAAGTTATGTAAGTTAT
Found at i:51827818 original size:11 final size:9
Alignment explanation
Indices: 51827770--51827908 Score: 65
Period size: 7 Copynumber: 16.0 Consensus size: 9
51827760 AATTGCAATG
51827770 GTAAGTTAT
1 GTAAGTTAT
51827779 GTAAGTTAT
1 GTAAGTTAT
51827788 GTAAGTTAAAT
1 GTAAGTT--AT
51827799 GT-A-TTAT
1 GTAAGTTAT
51827806 GTAAGTTAAAT
1 GTAAGTT--AT
51827817 GTAAG-T-T
1 GTAAGTTAT
51827824 GTAAGTTAT
1 GTAAGTTAT
*
51827833 -TATGTATTAT
1 GTAAG--TTAT
51827843 GTAAG-T-T
1 GTAAGTTAT
51827850 GTAAGTTAAAT
1 GTAAGTT--AT
*
51827861 GT-A-TTGT
1 GTAAGTTAT
51827868 GTAAG-T-T
1 GTAAGTTAT
51827875 GTAAGTTAAAT
1 GTAAGTT--AT
51827886 GT-A-TTAT
1 GTAAGTTAT
51827893 GTAAG-T-T
1 GTAAGTTAT
51827900 GTAAGTTAT
1 GTAAGTTAT
51827909 AATGTATTAT
Statistics
Matches: 102, Mismatches: 3, Indels: 50
0.66 0.02 0.32
Matches are distributed among these distances:
7 35 0.34
8 13 0.13
9 26 0.25
10 8 0.08
11 20 0.20
ACGTcount: A:0.35, C:0.00, G:0.21, T:0.45
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:51827849 original size:26 final size:26
Alignment explanation
Indices: 51827815--51828143 Score: 441
Period size: 26 Copynumber: 13.1 Consensus size: 26
51827805 TGTAAGTTAA
*
51827815 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
51827841 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
*
51827866 GTGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
51827891 ATGTAAGTTGTAAGTTATAATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
*
51827917 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
* *
51827943 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
* *
51827969 GTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
*
51827995 GTGTAAGTTGTAAGTTA-AATG---T
1 ATGTAAGTTGTAAGTTATAATGTATT
* *
51828017 AT-T-A--TGTCAGTCA-AATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
51828038 ATGTAAGTTGTAAGTTA-AATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
*
51828063 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
51828089 ATGTAAGTAATGTAAGTTA-AATGTATT
1 ATGTAAGT--TGTAAGTTATAATGTATT
*
51828116 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATAATGTATT
51828142 AT
1 AT
51828144 TTAATAAAAT
Statistics
Matches: 277, Mismatches: 14, Indels: 24
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.04
20 1 0.00
21 4 0.01
22 3 0.01
23 1 0.00
25 91 0.33
26 142 0.51
27 15 0.05
28 9 0.03
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.47
Consensus pattern (26 bp):
ATGTAAGTTGTAAGTTATAATGTATT
Found at i:51827921 original size:19 final size:19
Alignment explanation
Indices: 51827899--51828139 Score: 80
Period size: 19 Copynumber: 13.2 Consensus size: 19
51827889 TTATGTAAGT
51827899 TGTAAGTTATAATGTATTA
1 TGTAAGTTATAATGTATTA
*
51827918 TGTAAGTTGTAA-GTTATTA
1 TGTAAGTTATAATG-TATTA
* *
51827937 TGT-A--T-T-GTGTAAGT-
1 TGTAAGTTATAATGT-ATTA
* *
51827951 TGTAAGTTATTATGTATTG
1 TGTAAGTTATAATGTATTA
*
51827970 TGTAAGTTGTAA-GTTATTA
1 TGTAAGTTATAATG-TATTA
* *
51827989 TGT-A--T-T-GTGTAAGT-
1 TGTAAGTTATAATGT-ATTA
51828003 TGTAAGTTA-AATGTATTA
1 TGTAAGTTATAATGTATTA
* *
51828021 TGTCAGTCA-AATGTATTA
1 TGTAAGTTATAATGTATTA
51828039 TGTAAGTTGTAAGTTAAATGTATTA
1 TGTAAG-T-T-A--T-AATGTATTA
*
51828064 TGTAAGTTGTAA-GTTATTA
1 TGTAAGTTATAATG-TATTA
51828083 TGT-A-TTATGTAA-GTA--A
1 TGTAAGTTA--TAATGTATTA
51828099 TGTAAGTTA-AATGTATTA
1 TGTAAGTTATAATGTATTA
*
51828117 TGTAAGTTGTAA-GTTATTA
1 TGTAAGTTATAATG-TATTA
51828136 TGTA
1 TGTA
51828140 TTATTTAATA
Statistics
Matches: 168, Mismatches: 19, Indels: 70
0.65 0.07 0.27
Matches are distributed among these distances:
14 8 0.05
15 12 0.07
16 9 0.05
17 7 0.04
18 48 0.29
19 65 0.39
20 1 0.01
21 1 0.01
23 1 0.01
24 1 0.01
25 15 0.09
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.46
Consensus pattern (19 bp):
TGTAAGTTATAATGTATTA
Found at i:51828043 original size:147 final size:150
Alignment explanation
Indices: 51827815--51828143 Score: 515
Period size: 147 Copynumber: 2.2 Consensus size: 150
51827805 TGTAAGTTAA
51827815 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTGTGTAAGTTGTAAG
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTA-T-TGTAAG-TGTAAG
* *
51827880 TTAAATGTATTATGTAAGTTGTAAGTTATAATGTATTATGTAAGTTGTAAGTTATTATGTATTGT
63 TCAAATGTATTATGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATTATGTATTAT
*
51827945 GTAAGT-TGTAAGTTATTATGTATT
127 GTAAGTATGTAAGTTA-AATGTATT
* * *
51827969 GTGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTAAATGTA-T-T-A-TGTCAGTCA
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTGTAAGTGTAAGTCA
51828030 AATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAA
66 AATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAA
51828095 GTAATGTAAGTTAAATGTATT
131 GT-ATGTAAGTTAAATGTATT
51828116 ATGTAAGTTGTAAGTTATTATGTATTAT
1 ATGTAAGTTGTAAGTTATTATGTATTAT
51828144 TTAATAAAAT
Statistics
Matches: 165, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
146 41 0.25
147 65 0.39
148 9 0.05
149 1 0.01
150 1 0.01
151 1 0.01
154 47 0.28
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.47
Consensus pattern (150 bp):
ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATTGTAAGTGTAAGTCA
AATGTATTATGTAAGTTGTAAGTTAAATGTATTATGTAAGTTGTAAGTTATTATGTATTATGTAA
GTATGTAAGTTAAATGTATT
Found at i:51828067 original size:18 final size:18
Alignment explanation
Indices: 51828003--51828124 Score: 74
Period size: 18 Copynumber: 6.4 Consensus size: 18
51827993 TTGTGTAAGT
51828003 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
* *
51828021 TGTCAGTCAAATGTATTATGTAA
1 TGTAAGTTAAATG---TAT-T-A
51828044 GTTGTAAGTTAAATGTATTA
1 --TGTAAGTTAAATGTATTA
*
51828064 TGTAAGTTGTAA-GTTATTA
1 TGTAAGTT-AAATG-TATTA
*
51828083 TGT-A-TT--ATGTAAGTAA
1 TGTAAGTTAAATGT-A-TTA
51828099 TGTAAGTTAAATGTATTA
1 TGTAAGTTAAATGTATTA
51828117 TGTAAGTT
1 TGTAAGTT
51828125 GTAAGTTATT
Statistics
Matches: 81, Mismatches: 7, Indels: 32
0.68 0.06 0.27
Matches are distributed among these distances:
14 2 0.02
15 2 0.02
16 5 0.06
17 3 0.04
18 33 0.41
19 11 0.14
20 5 0.06
21 4 0.05
22 4 0.05
23 1 0.01
25 11 0.14
ACGTcount: A:0.35, C:0.02, G:0.19, T:0.44
Consensus pattern (18 bp):
TGTAAGTTAAATGTATTA
Found at i:51828113 original size:53 final size:51
Alignment explanation
Indices: 51827815--51828143 Score: 487
Period size: 52 Copynumber: 6.5 Consensus size: 51
51827805 TGTAAGTTAA
51827815 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
* *
51827866 GTGTAAGTTGTAAGTTA-AATGTATTATGTAAGTTGTAAGTTATAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATT
* *
51827917 ATGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTA-AATGTATT
* *
51827969 GTGTAAGTTGTAAGTTATTATGTATTGTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
* *
51828020 ATGTCA---GTCA---A--ATGTATTATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
51828063 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTAATGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTATTATGTATTATGTAAGT--TGTAAGTTAAATGTATT
51828116 ATGTAAGTTGTAAGTTATTATGTATTAT
1 ATGTAAGTTGTAAGTTATTATGTATTAT
51828144 TTAATAAAAT
Statistics
Matches: 252, Mismatches: 14, Indels: 22
0.88 0.05 0.08
Matches are distributed among these distances:
43 36 0.14
45 1 0.00
46 3 0.01
48 3 0.01
49 1 0.00
50 24 0.10
51 66 0.26
52 73 0.29
53 45 0.18
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.47
Consensus pattern (51 bp):
ATGTAAGTTGTAAGTTATTATGTATTATGTAAGTTGTAAGTTAAATGTATT
Found at i:51828262 original size:73 final size:73
Alignment explanation
Indices: 51828179--51828403 Score: 423
Period size: 73 Copynumber: 3.1 Consensus size: 73
51828169 AACATTACTA
51828179 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
1 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
51828244 ATATTTTT
66 ATATTTTT
51828252 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
1 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
51828317 ATATTTTTT
66 ATA-TTTTT
*
51828326 TTATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
1 ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
51828391 ATATTTTT
66 ATATTTTT
*
51828399 TTATA
1 ATATA
51828404 TTTTATTTTA
Statistics
Matches: 150, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
73 78 0.52
74 72 0.48
ACGTcount: A:0.42, C:0.07, G:0.01, T:0.50
Consensus pattern (73 bp):
ATATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCAC
ATATTTTT
Found at i:51828312 original size:41 final size:41
Alignment explanation
Indices: 51828265--51828386 Score: 118
Period size: 41 Copynumber: 3.2 Consensus size: 41
51828255 TAATTATTAA
51828265 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
1 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
** * * * *
51828306 TAATA-TT--CCACAT---ATTTT-TTTT-ATAAT-TATTAA
1 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATT-T
51828339 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
1 TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
51828380 TAATATT
1 TAATATT
51828387 CCACATATTT
Statistics
Matches: 59, Mismatches: 12, Indels: 20
0.65 0.13 0.22
Matches are distributed among these distances:
32 3 0.05
33 9 0.15
34 6 0.10
35 5 0.08
36 3 0.05
38 3 0.05
39 5 0.08
40 6 0.10
41 16 0.27
42 3 0.05
ACGTcount: A:0.42, C:0.06, G:0.02, T:0.51
Consensus pattern (41 bp):
TAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTT
Found at i:51828368 original size:74 final size:74
Alignment explanation
Indices: 51828180--51828400 Score: 426
Period size: 74 Copynumber: 3.0 Consensus size: 74
51828170 ACATTACTAA
51828180 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
*
51828245 TA-TTTTTA
66 TATTTTTTT
51828253 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
51828318 TATTTTTTT
66 TATTTTTTT
51828327 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
1 TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
51828392 TATTTTTTT
66 TATTTTTTT
51828401 ATATTTTATT
Statistics
Matches: 146, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
73 67 0.46
74 79 0.54
ACGTcount: A:0.41, C:0.07, G:0.01, T:0.51
Consensus pattern (74 bp):
TATAATTATTAATAATATTTAATAAAATAACATTTTATTTTAATAGTCAATTTTAATATTCCACA
TATTTTTTT
Found at i:51828568 original size:13 final size:13
Alignment explanation
Indices: 51828550--51828620 Score: 106
Period size: 13 Copynumber: 5.5 Consensus size: 13
51828540 ATTTATAATT
51828550 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
51828563 ATTTAAGTAACAT
1 ATTTAAGTAATAA
51828576 ATTTAAGTAATAA
1 ATTTAAGTAATAA
* *
51828589 ATTTAAGTAACAT
1 ATTTAAGTAATAA
51828602 ATTTAAGTAATAA
1 ATTTAAGTAATAA
51828615 ATTTAA
1 ATTTAA
51828621 ACAAATTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 50 1.00
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (13 bp):
ATTTAAGTAATAA
Found at i:51828579 original size:26 final size:26
Alignment explanation
Indices: 51828549--51828620 Score: 144
Period size: 26 Copynumber: 2.8 Consensus size: 26
51828539 TATTTATAAT
51828549 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
51828575 TATTTAAGTAATAAATTTAAGTAACA
1 TATTTAAGTAATAAATTTAAGTAACA
51828601 TATTTAAGTAATAAATTTAA
1 TATTTAAGTAATAAATTTAA
51828621 ACAAATTTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.50, C:0.03, G:0.07, T:0.40
Consensus pattern (26 bp):
TATTTAAGTAATAAATTTAAGTAACA
Found at i:51828647 original size:17 final size:17
Alignment explanation
Indices: 51828625--51828923 Score: 161
Period size: 17 Copynumber: 16.6 Consensus size: 17
51828615 ATTTAAACAA
51828625 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
51828642 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
51828659 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
51828676 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* * *
51828699 ATTTAAGTAATTAAT-A
1 ATTTTAGTAAGTAATGT
* *
51828715 AATTTA--AA-CAA---
1 ATTTTAGTAAGTAATGT
51828726 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
51828743 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
51828760 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
51828777 AAACAAATTTTAGTAAGTAATGT
1 ------ATTTTAGTAAGTAATGT
* *
51828800 ATTTTAG-AAATAAATTT
1 ATTTTAGTAAGT-AATGT
*
51828817 AAACAAATTTATGTAAGTAATGT
1 -----ATTTTA-GTAAGTAATGT
51828840 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
*
51828857 ATTTTAGTAA-TAAATTT
1 ATTTTAGTAAGT-AATGT
*
51828874 AAACAAATTTTAGTAAGTAATTT
1 ------ATTTTAGTAAGTAATGT
51828897 ATTTTAGTAAGTAATGT
1 ATTTTAGTAAGTAATGT
51828914 ATTTTAGTAA
1 ATTTTAGTAA
51828924 TAAATTTAAC
Statistics
Matches: 224, Mismatches: 20, Indels: 76
0.70 0.06 0.24
Matches are distributed among these distances:
11 5 0.02
13 4 0.02
14 4 0.02
16 10 0.04
17 137 0.61
18 5 0.02
22 5 0.02
23 48 0.21
24 6 0.03
ACGTcount: A:0.43, C:0.02, G:0.12, T:0.44
Consensus pattern (17 bp):
ATTTTAGTAAGTAATGT
Found at i:51828671 original size:57 final size:57
Alignment explanation
Indices: 51828592--51828932 Score: 375
Period size: 57 Copynumber: 6.5 Consensus size: 57
51828582 GTAATAAATT
** *
51828592 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
51828649 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTA--TT--
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
* * *
51828702 TAAGTAAT-TA----A-T-A-AATTTAAACA-AATTTT-AGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAA-ACAAATTTTAGTAAGTAATGTATTTTAG
51828750 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
* *
51828807 -AAATAA---A-TTTA--AACAAATTT-----A----T-GTAAGTAATGTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
*
51828847 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATTTATTTTAG
1 TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
51828904 TAAGTAATGTATTTTAGTAATAAATTTAA
1 TAAGTAATGTATTTTAGTAATAAATTTAA
51828933 CATTCAATCG
Statistics
Matches: 238, Mismatches: 14, Indels: 64
0.75 0.04 0.20
Matches are distributed among these distances:
40 18 0.08
41 6 0.03
44 14 0.06
45 16 0.07
46 4 0.02
47 9 0.04
48 9 0.04
49 2 0.01
50 8 0.03
52 7 0.03
53 10 0.04
54 1 0.00
55 4 0.02
56 17 0.07
57 113 0.47
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (57 bp):
TAAGTAATGTATTTTAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAG
Found at i:51828686 original size:40 final size:40
Alignment explanation
Indices: 51828642--51828752 Score: 177
Period size: 44 Copynumber: 2.7 Consensus size: 40
51828632 TAAGTAATGT
51828642 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
51828682 ATTTTAGTAAGTAATGTATTTAAGTAATTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTT---T-AGTAATAAATTTAAACAA
51828726 ATTTTAGTAAGTAATGTATTTTAGTAA
1 ATTTTAGTAAGTAATGTATTTTAGTAA
51828753 GTAATGTATT
Statistics
Matches: 65, Mismatches: 2, Indels: 8
0.87 0.03 0.11
Matches are distributed among these distances:
40 25 0.38
41 1 0.02
43 1 0.02
44 38 0.58
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:51828728 original size:101 final size:100
Alignment explanation
Indices: 51828609--51828911 Score: 533
Period size: 101 Copynumber: 3.0 Consensus size: 100
51828599 CATATTTAAG
51828609 TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
1 TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
*
51828674 TTAAACAAATTTTAGTAAGTAATGTATTTAAGTAA
66 TTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
51828709 TTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
1 -TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
51828774 TTTAAACAAATTTTAGTAAGTAATGTATTTTAG--A
65 TTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
51828808 -AATAAATTTAAACAAA-TTTATGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
1 TAATAAATTTAAACAAATTTTA-GTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAA
*
51828871 TTTAAACAAATTTTAGTAAGTAATTTATTTTAGTAA
65 TTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
51828907 GTAAT
1 -TAAT
51828912 GTATTTTAGT
Statistics
Matches: 195, Mismatches: 2, Indels: 10
0.94 0.01 0.05
Matches are distributed among these distances:
96 4 0.02
97 90 0.46
99 2 0.01
101 99 0.51
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (100 bp):
TAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAATGTATTTTAGTAATAAAT
TTAAACAAATTTTAGTAAGTAATGTATTTTAGTAA
Found at i:51828790 original size:40 final size:40
Alignment explanation
Indices: 51828743--51828849 Score: 189
Period size: 40 Copynumber: 2.7 Consensus size: 40
51828733 TAAGTAATGT
51828743 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
*
51828783 ATTTTAGTAAGTAATGTATTTTAGAAATAAATTTAAACAA
1 ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
51828823 A-TTTATGTAAGTAATGTATTTTAGTAA
1 ATTTTA-GTAAGTAATGTATTTTAGTAA
51828850 GTAATGTATT
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
39 4 0.06
40 60 0.94
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (40 bp):
ATTTTAGTAAGTAATGTATTTTAGTAATAAATTTAAACAA
Found at i:51828903 original size:97 final size:97
Alignment explanation
Indices: 51828592--51828900 Score: 521
Period size: 97 Copynumber: 3.1 Consensus size: 97
51828582 GTAATAAATT
** *
51828592 TAAGTAACATATTTAAGTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
1 TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
51828657 GTATTTTAGTAATAAATTTAAACAAATTTTAG
66 GTATTTTAGTAATAAATTTAAACAAATTTTAG
51828689 TAAGTAATGTATTTAAGTAATTAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAG
1 TAAGTAATGTATTTAAG--A--AATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAG
51828754 TAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
62 TAATGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
51828790 TAAGTAATGTATTTTAGAAATAAATTTAAACAAA-TTTATGTAAGTAATGTATTTTAGTAAGTAA
1 TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTA-GTAAGTAATGTATTTTAGTAAGTAA
51828854 TGTATTTTAGTAATAAATTTAAACAAATTTTAG
65 TGTATTTTAGTAATAAATTTAAACAAATTTTAG
*
51828887 TAAGTAATTTATTT
1 TAAGTAATGTATTT
51828901 TAGTAAGTAA
Statistics
Matches: 202, Mismatches: 5, Indels: 10
0.93 0.02 0.05
Matches are distributed among these distances:
96 4 0.02
97 102 0.50
99 1 0.00
101 95 0.47
ACGTcount: A:0.44, C:0.02, G:0.11, T:0.43
Consensus pattern (97 bp):
TAAGTAATGTATTTAAGAAATAAATTTAAACAAATTTTAGTAAGTAATGTATTTTAGTAAGTAAT
GTATTTTAGTAATAAATTTAAACAAATTTTAG
Found at i:51830282 original size:11 final size:11
Alignment explanation
Indices: 51830266--51830305 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
51830256 GATGATAATA
51830266 CATTAGTTACC
1 CATTAGTTACC
51830277 CATTAGTTACC
1 CATTAGTTACC
*
51830288 CACTAGTTACC
1 CATTAGTTACC
51830299 CA-TAGTT
1 CATTAGTT
51830306 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:51831771 original size:88 final size:84
Alignment explanation
Indices: 51831553--51831830 Score: 448
Period size: 84 Copynumber: 3.3 Consensus size: 84
51831543 CCACATTTCC
51831553 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
51831618 CTGGAATTGCATTATTTGT
66 CTGGAATTGCATTATTTGT
* *
51831637 GGCTTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTGTGTGG
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTT-CGTGG
* *
51831702 TTTGGAATAATTGCATTGTTTGT
65 TCTGG---AATTGCATTATTTGT
** *
51831725 GGCGTTTTTATAAAAACGCCACTAAATATTACAGCTGTCAACAGAAACGACACCGTTTTCGTGGT
1 GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
*
51831790 CTGGAATTGCATTATTTGC
66 CTGGAATTGCATTATTTGT
51831809 GGCGTTTTCCTAAAAACGCCAC
1 GGCGTTTTCCTAAAAACGCCAC
51831831 CAAAAGTTTA
Statistics
Matches: 176, Mismatches: 14, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
84 91 0.52
85 8 0.05
87 8 0.05
88 69 0.39
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (84 bp):
GGCGTTTTCCTAAAAACGCCACTAAATATTACAGCTGTGAACAGAAACGACACCGTTTTCGTGGT
CTGGAATTGCATTATTTGT
Found at i:51833625 original size:111 final size:111
Alignment explanation
Indices: 51833433--51833957 Score: 901
Period size: 111 Copynumber: 4.7 Consensus size: 111
51833423 TTTTTTATTA
* *
51833433 GGTGTATTATTTGC-GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGACGTTTTACA
1 GGTGTATTATTT-CTGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACA
*
51833497 ATAAACGCCACTAATTCCCCCCAAAGGCCACAAAACGGCACCGTCTA
65 ATAAACGCCACTAATTCCCCCCAAAGGCCACAAAACGGCACCGTCTG
51833544 GGTGTATTATTTCTGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAA
1 GGTGTATTATTTCTGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAA
51833609 TAAACGCCACTAATTCCCCCCAAAGGCCACAAAACGGCACCGTCTG
66 TAAACGCCACTAATTCCCCCCAAAGGCCACAAAACGGCACCGTCTG
51833655 GGTGTATTATTTCTGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAA
1 GGTGTATTATTTCTGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAA
51833720 TAAACGCCACTAATTCCCCCCAAAGGCCACAAAACGGCACCGTCTG
66 TAAACGCCACTAATTCCCCCCAAAGGCCACAAAACGGCACCGTCTG
* ** *
51833766 GGTGTATTATTTCCGGTATTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGACGCTTTACAA
1 GGTGTATTATTTCTGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAA
*
51833831 TAAACGCCACTAATTCCCCCCCCAAAGGCCACAAAATGGCACCGTCTG
66 TAAACGCCACTAATT--CCCCCCAAAGGCCACAAAACGGCACCGTCTG
* * *
51833879 GGTGTATTATTT-TCGGCGTTTTTTATAAACGCTGCTAATGCTCACTCTTTAGCGGCACTTTGCA
1 GGTGTATTATTTCT-GGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACA
51833943 ATAAACGCCACTAAT
65 ATAAACGCCACTAAT
51833958 GCTCACTCTT
Statistics
Matches: 395, Mismatches: 15, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
110 1 0.00
111 293 0.74
113 101 0.26
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (111 bp):
GGTGTATTATTTCTGGCGTTTTTTATAAACGCTGCTAATGTTCACTCTTTAGCGGCGCTTTACAA
TAAACGCCACTAATTCCCCCCAAAGGCCACAAAACGGCACCGTCTG
Found at i:51834015 original size:40 final size:40
Alignment explanation
Indices: 51833904--51834037 Score: 169
Period size: 40 Copynumber: 3.3 Consensus size: 40
51833894 GCGTTTTTTA
* * * * **
51833904 TAAACGCTGCTAATGCTCACTCTTTAGCGGCACTTTGCAA
1 TAAACGCCGCTAATGCTCACTCTTTAGCAGCGCTTTTCCT
*
51833944 TAAACGCCACTAATGCTCACTCTTTAGCAGCGCTTTTCCT
1 TAAACGCCGCTAATGCTCACTCTTTAGCAGCGCTTTTCCT
* *
51833984 TAAACGCCGCTAATGCTCACTCTTTAGCAGCGTTTTTGCT
1 TAAACGCCGCTAATGCTCACTCTTTAGCAGCGCTTTTCCT
*
51834024 CCAAACGCCGCTAA
1 -TAAACGCCGCTAA
51834038 AAGTGCCGCT
Statistics
Matches: 82, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 70 0.85
41 12 0.15
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.30
Consensus pattern (40 bp):
TAAACGCCGCTAATGCTCACTCTTTAGCAGCGCTTTTCCT
Found at i:51835370 original size:20 final size:20
Alignment explanation
Indices: 51835347--51835403 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
51835337 ATACTAGAAT
*
51835347 AAAAGTATCAATACTTTGAC
1 AAAAGTATCAATACTTTGAA
** *
51835367 AAAAGTATTGATTCTTTGAA
1 AAAAGTATCAATACTTTGAA
51835387 AAAAGTATCAATACTTT
1 AAAAGTATCAATACTTT
51835404 AAGCCAAGTA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.44, C:0.11, G:0.11, T:0.35
Consensus pattern (20 bp):
AAAAGTATCAATACTTTGAA
Found at i:51844749 original size:27 final size:26
Alignment explanation
Indices: 51844708--51844958 Score: 236
Period size: 27 Copynumber: 9.3 Consensus size: 26
51844698 GTAATGGGCC
* * *
51844708 TAAAATGACCAAAATACCCACAAAAGG
1 TAAAATGA-CAAAATACCCTCGAAGGG
* *
51844735 TAAAATGATCGAAATA-CTTCCGAAGGG
1 TAAAATGA-CAAAATACCCT-CGAAGGG
*
51844762 TAAAATAACTAAAATACCC-CTGAAGGG
1 TAAAATGAC-AAAATACCCTC-GAAGGG
* *
51844789 TAAAATGACTGAAATACCCTGGAAGGG
1 TAAAATGAC-AAAATACCCTCGAAGGG
*
51844816 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGA-CAAAATACCCTCGAAGGG
* *
51844843 TAAAATGACTAAAATACCTTTGAAGGG
1 TAAAATGAC-AAAATACCCTCGAAGGG
* * *
51844870 TAAAATAACCGAAATACCCTCAAAGGG
1 TAAAATGA-CAAAATACCCTCGAAGGG
**
51844897 TAAAATGACTAAAATACCCTTAAAGGG
1 TAAAATGAC-AAAATACCCTCGAAGGG
* *
51844924 TAAAATAACAAAATACCCCCGAAGGG
1 TAAAATGACAAAATACCCTCGAAGGG
51844950 TAAAATGAC
1 TAAAATGAC
51844959 TGTTATACCC
Statistics
Matches: 186, Mismatches: 29, Indels: 19
0.79 0.12 0.08
Matches are distributed among these distances:
26 27 0.15
27 156 0.84
28 3 0.02
ACGTcount: A:0.47, C:0.18, G:0.18, T:0.18
Consensus pattern (26 bp):
TAAAATGACAAAATACCCTCGAAGGG
Found at i:51844791 original size:54 final size:53
Alignment explanation
Indices: 51844708--51844959 Score: 287
Period size: 54 Copynumber: 4.7 Consensus size: 53
51844698 GTAATGGGCC
* * * * *
51844708 TAAAATGACCAAAATACCCACAAAAGGTAAAATGA-TCGAAATACTTCC-GAAGGG
1 TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACT-AAAATAC--CCTGAAGGG
* *
51844762 TAAAATAACTAAAATACCC-CTGAAGGGTAAAATGACTGAAATACCCTGGAAGGG
1 TAAAATAACCAAAATACCCTC-GAAGGGTAAAATGACTAAAATACCCT-GAAGGG
* * *
51844816 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTAAAATACCTTTGAAGGG
1 TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACTAAAATACC-CTGAAGGG
* * *
51844870 TAAAATAACCGAAATACCCTCAAAGGGTAAAATGACTAAAATACCCTTAAAGGG
1 TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACTAAAATACCC-TGAAGGG
*
51844924 TAAAATAA-CAAAATACCCCCGAAGGGTAAAATGACT
1 TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACT
51844960 GTTATACCCC
Statistics
Matches: 175, Mismatches: 16, Indels: 15
0.85 0.08 0.07
Matches are distributed among these distances:
52 2 0.01
53 26 0.15
54 144 0.82
55 3 0.02
ACGTcount: A:0.46, C:0.18, G:0.17, T:0.18
Consensus pattern (53 bp):
TAAAATAACCAAAATACCCTCGAAGGGTAAAATGACTAAAATACCCTGAAGGG
Found at i:51844843 original size:81 final size:81
Alignment explanation
Indices: 51844708--51844960 Score: 321
Period size: 81 Copynumber: 3.1 Consensus size: 81
51844698 GTAATGGGCC
** * * * *
51844708 TAAAATGACCAAAATACCCACAAAAGGTAAAATGATCGAAATA-CTTCCGAAGGGTAAAATAACT
1 TAAAATGACTGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCT-CGAAGGGTAAAATAACT
51844772 AAAATACCCCTGAAGGG
65 AAAATACCCCTGAAGGG
** *
51844789 TAAAATGACTGAAATACCCTGGAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATGACTA
1 TAAAATGACTGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATAACTA
**
51844854 AAATACCTTTGAAGGG
66 AAATACCCCTGAAGGG
* * ** **
51844870 TAAAATAACCGAAATACCCTCAAAGGGTAAAATGACTAAAATACCCTTAAAGGGTAAAATAAC-A
1 TAAAATGACTGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATAACTA
*
51844934 AAATACCCCCGAAGGG
66 AAATACCCCTGAAGGG
51844950 TAAAATGACTG
1 TAAAATGACTG
51844961 TTATACCCCT
Statistics
Matches: 146, Mismatches: 25, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
80 23 0.16
81 121 0.83
82 2 0.01
ACGTcount: A:0.46, C:0.18, G:0.18, T:0.18
Consensus pattern (81 bp):
TAAAATGACTGAAATACCCTCAAAGGGTAAAATGACCGAAATACCCTCGAAGGGTAAAATAACTA
AAATACCCCTGAAGGG
Found at i:51845150 original size:27 final size:26
Alignment explanation
Indices: 51845120--51845194 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
51845110 TGTACTGGTG
* *
51845120 GCTTTGCCACATATACTGTTACTGGCA
1 GCTTTGCTACAT-TACTATTACTGGCA
* * *
51845147 GCTTTGTTGCATTACTATTATTGGCA
1 GCTTTGCTACATTACTATTACTGGCA
* *
51845173 GCTTTGCTACATCATTATTACT
1 GCTTTGCTACATTACTATTACT
51845195 AATAGCTTTG
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
26 29 0.76
27 9 0.24
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.41
Consensus pattern (26 bp):
GCTTTGCTACATTACTATTACTGGCA
Found at i:51845374 original size:33 final size:33
Alignment explanation
Indices: 51845309--51845374 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
51845299 TGCATTACTG
* *
51845309 CATTGTACTGTTACTGTACTGGGCTAATGCCCA
1 CATTGTACTGTTACTGTAATGGGCTAAGGCCCA
*
51845342 CATTGTACTGTTACTG-AATAGGGCTCAGGCCCA
1 CATTGTACTGTTACTGTAAT-GGGCTAAGGCCCA
51845375 GACTGTTACT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 2 0.07
33 27 0.93
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.30
Consensus pattern (33 bp):
CATTGTACTGTTACTGTAATGGGCTAAGGCCCA
Found at i:51845753 original size:16 final size:16
Alignment explanation
Indices: 51845731--51845767 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
51845721 TAATAAAATT
51845731 TCAAAAATATTTAATAA
1 TCAAAAA-ATTTAATAA
51845748 -C-AAAAATTTAATAA
1 TCAAAAAATTTAATAA
51845762 TCAAAA
1 TCAAAA
51845768 TTTTAAACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 5
0.78 0.00 0.22
Matches are distributed among these distances:
14 9 0.50
15 5 0.28
16 4 0.22
ACGTcount: A:0.62, C:0.08, G:0.00, T:0.30
Consensus pattern (16 bp):
TCAAAAAATTTAATAA
Found at i:51845756 original size:14 final size:15
Alignment explanation
Indices: 51845734--51845773 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
51845724 TAAAATTTCA
51845734 AAAATATTTAATAA-C
1 AAAA-ATTTAATAATC
51845749 AAAAATTTAATAATC
1 AAAAATTTAATAATC
*
51845764 AAAATTTTAA
1 AAAAATTTAA
51845774 ACATCTAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.39
15 14 0.61
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (15 bp):
AAAAATTTAATAATC
Found at i:51848168 original size:12 final size:12
Alignment explanation
Indices: 51848153--51848193 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
51848143 TAAAAAACAT
51848153 AATAATAATATA
1 AATAATAATATA
51848165 AATAATAATATA
1 AATAATAATATA
*
51848177 GAT-AT-ATATA
1 AATAATAATATA
51848187 TAATAAT
1 -AATAAT
51848194 GTTAGCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
10 5 0.20
11 4 0.16
12 16 0.64
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (12 bp):
AATAATAATATA
Found at i:51854626 original size:18 final size:18
Alignment explanation
Indices: 51854605--51854644 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
51854595 ATAATTTCAA
*
51854605 AAAAATA-TATAATACATC
1 AAAAATACTA-AAAACATC
51854623 AAAAATACTAAAAACATC
1 AAAAATACTAAAAACATC
51854641 AAAA
1 AAAA
51854645 TAAATATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 18 0.90
19 2 0.10
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (18 bp):
AAAAATACTAAAAACATC
Found at i:51855414 original size:42 final size:43
Alignment explanation
Indices: 51855353--51855478 Score: 134
Period size: 43 Copynumber: 3.0 Consensus size: 43
51855343 ATAAATGTCG
* *
51855353 CTAAAGGTCATGACCTTTAGC-AGCGC-TTTCAC-ACAAACGCCA
1 CTAAAGGTCATGACTTTTAGCGA-CACTTTTC-CTACAAACGCCA
*
51855395 CTAAAGGTCATGACTTTTAGCGACACTTTTCCTACAAACGCCG
1 CTAAAGGTCATGACTTTTAGCGACACTTTTCCTACAAACGCCA
* ** * *
51855438 CTATAGACCATGACTTTTAGCGGCACTTTT-TTACAAACGCC
1 CTAAAGGTCATGACTTTTAGCGACACTTTTCCTACAAACGCC
51855479 GCTATTGAAC
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
42 33 0.45
43 40 0.55
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.27
Consensus pattern (43 bp):
CTAAAGGTCATGACTTTTAGCGACACTTTTCCTACAAACGCCA
Found at i:51855450 original size:43 final size:43
Alignment explanation
Indices: 51855385--51855610 Score: 162
Period size: 43 Copynumber: 5.3 Consensus size: 43
51855375 GCGCTTTCAC
* * **
51855385 ACAAACGCCACTAAAGGTCATGACTTTTAGCGACACTTTTCCT
1 ACAAACGCCGCTATAGAACATGACTTTTAGCGACACTTTTCCT
* * *
51855428 ACAAACGCCGCTATAGACCATGACTTTTAGCGGCACTTTT-TT
1 ACAAACGCCGCTATAGAACATGACTTTTAGCGACACTTTTCCT
* * *
51855470 ACAAACGCCGCTATTGAACA-GA-TCTTTAGCGACGCTTTTTCGT
1 ACAAACGCCGCTATAGAACATGACT-TTTAGCGACAC-TTTTCCT
* * * * **
51855513 ACATACGCCGCTATTGAACA--AATCTTTAGCGACGCTTTTTAGT
1 ACAAACGCCGCTATAGAACATGACT-TTTAGCGACAC-TTTTCCT
* * * *
51855556 ACATACGCCGCTATAGAACA--AATCTTTAACGGCACTTTTCGC-
1 ACAAACGCCGCTATAGAACATGACT-TTTAGCGACACTTTTC-CT
51855598 ACAAACGCCGCTA
1 ACAAACGCCGCTA
51855611 AAAGCATATC
Statistics
Matches: 158, Mismatches: 20, Indels: 11
0.84 0.11 0.06
Matches are distributed among these distances:
40 1 0.01
41 11 0.07
42 40 0.25
43 106 0.67
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (43 bp):
ACAAACGCCGCTATAGAACATGACTTTTAGCGACACTTTTCCT
Found at i:51855510 original size:85 final size:84
Alignment explanation
Indices: 51855410--51855610 Score: 219
Period size: 85 Copynumber: 2.4 Consensus size: 84
51855400 GGTCATGACT
* * *
51855410 TTTAGCGACACTTTTCCTACAAACGCCGCTATAGACCATGA-CTTTTAGCGGCACTTTTT-TACA
1 TTTAGCGACACTTTTCCTACAAACGCCGCTATAGAACA-AATC-TTTAGCGACACTTTTTATACA
* *
51855473 AACGCCGCTATTGAACAGATC
64 AACGCCGCTATAGAACAAATC
* * * * *
51855494 TTTAGCGACGCTTTTTCGTACATACGCCGCTATTGAACAAATCTTTAGCGACGCTTTTTAGTACA
1 TTTAGCGACAC-TTTTCCTACAAACGCCGCTATAGAACAAATCTTTAGCGACACTTTTTA-TACA
*
51855559 TACGCCGCTATAGAACAAATC
64 AACGCCGCTATAGAACAAATC
* *
51855580 TTTAACGGCACTTTTCGC-ACAAACGCCGCTA
1 TTTAGCGACACTTTTC-CTACAAACGCCGCTA
51855611 AAAGCATATC
Statistics
Matches: 96, Mismatches: 16, Indels: 9
0.79 0.13 0.07
Matches are distributed among these distances:
84 25 0.26
85 41 0.43
86 30 0.31
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (84 bp):
TTTAGCGACACTTTTCCTACAAACGCCGCTATAGAACAAATCTTTAGCGACACTTTTTATACAAA
CGCCGCTATAGAACAAATC
Found at i:51855914 original size:43 final size:43
Alignment explanation
Indices: 51855867--51855957 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
51855857 ACATATGCAA
* * *
51855867 GGTAATAAAACATACAATGCATTTTCTTAATAAAGTAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATAAAGGAAATCTT
* * *
51855910 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAACATACAATACATTTACTTAATAAAGGAAATCTT
51855953 -GTAAT
1 GGTAAT
51855958 GAACTCAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.45, C:0.10, G:0.11, T:0.34
Consensus pattern (43 bp):
GGTAATAAAACATACAATACATTTACTTAATAAAGGAAATCTT
Found at i:51859993 original size:8 final size:7
Alignment explanation
Indices: 51859975--51860080 Score: 54
Period size: 7 Copynumber: 14.9 Consensus size: 7
51859965 ACCAATTAAT
51859975 CTAAACC
1 CTAAACC
51859982 CTAAACCC
1 CTAAA-CC
51859990 CT-AACC
1 CTAAACC
* *
51859996 CTTATCTC
1 CTAAAC-C
*
51860004 TTAAACC
1 CTAAACC
*
51860011 CTAAATC
1 CTAAACC
* *
51860018 ATAAATC
1 CTAAACC
*
51860025 ATAAACC
1 CTAAACC
*
51860032 CTAACCC
1 CTAAACC
51860039 CTAAACC
1 CTAAACC
* *
51860046 CATGACCC
1 C-TAAACC
51860054 CT-AACC
1 CTAAACC
*
51860060 TCTAACCC
1 -CTAAACC
51860068 CTAAACC
1 CTAAACC
*
51860075 TTAAAC
1 CTAAAC
51860081 TCCAACCCTT
Statistics
Matches: 76, Mismatches: 17, Indels: 12
0.72 0.16 0.11
Matches are distributed among these distances:
6 7 0.09
7 53 0.70
8 16 0.21
ACGTcount: A:0.38, C:0.40, G:0.01, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:51860043 original size:14 final size:14
Alignment explanation
Indices: 51860026--51860074 Score: 64
Period size: 14 Copynumber: 3.4 Consensus size: 14
51860016 TCATAAATCA
51860026 TAAACCCTAACCCC
1 TAAACCCTAACCCC
*
51860040 TAAACCCATGACCCC
1 TAAACCC-TAACCCC
51860055 T-AACCTCTAACCCC
1 TAAACC-CTAACCCC
51860069 TAAACC
1 TAAACC
51860075 TTAAACTCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
14 18 0.60
15 12 0.40
ACGTcount: A:0.35, C:0.47, G:0.02, T:0.16
Consensus pattern (14 bp):
TAAACCCTAACCCC
Found at i:51860127 original size:22 final size:22
Alignment explanation
Indices: 51860102--51860144 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
51860092 AACTATAAAT
51860102 CATAATCCAAAATCCCTAAAAC
1 CATAATCCAAAATCCCTAAAAC
**
51860124 CATAATCCCTAATCCCTAAAA
1 CATAATCCAAAATCCCTAAAA
51860145 TAGTAACTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.47, C:0.33, G:0.00, T:0.21
Consensus pattern (22 bp):
CATAATCCAAAATCCCTAAAAC
Found at i:51860909 original size:41 final size:39
Alignment explanation
Indices: 51860849--51861212 Score: 296
Period size: 41 Copynumber: 8.9 Consensus size: 39
51860839 TAAAATATTT
*
51860849 TTAGCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCTCAGCA
1 TTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGCCC-CAGCA
* * *
51860890 TTAGCAGCACTTTTCCAAAAATGCCGCTAAAGCCCCCAGCA
1 TTAGCGGCGCTTTT-CAAAAACGCCGCTAAAG-CCCCAGCA
* * * *
51860931 TTAGCGGCGCTTTTAAAAAACGCCACTAAAACACCGAGCA
1 TTAGCGGCGCTTTTCAAAAACGCCGCTAAAGC-CCCAGCA
** * *
51860971 TTAGCAACGTTTTTTCAAAAACGCTGCTAAAGCCGCCAGCA
1 TTAGCGGCG-CTTTTCAAAAACGCCGCTAAAGCC-CCAGCA
* * * *
51861012 TTAGCGGCGCCTTTTCAAACACGCCTCTAAAACCTCGAGCA
1 TTAGCGGCG-CTTTTCAAAAACGCCGCTAAAGCC-CCAGCA
* * * ** *
51861053 TTAGCGGCACGTTTTTAAAAATCGCCGCTAAAACATCGGACA
1 TTAGCGGCGC-TTTTCAAAAA-CGCCGCTAAAGCCCCAG-CA
* * *
51861095 TTAGCGGCGCTTTTCCAAAAACGCTGCTAAAACACCGAGCA
1 TTAGCGGCGCTTTT-CAAAAACGCCGCTAAAGC-CCCAGCA
* **
51861136 TTAGCGGTGCATTTTCAAAAATACCGCTAAAGCCCCAAGCA
1 TTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGCCCC-AGCA
* * *
51861177 TTAGCGGCGCTTTTTTAGAAACACCGCTAAAGCCCC
1 TTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGCCCC
51861213 GAAAGGTAAG
Statistics
Matches: 256, Mismatches: 55, Indels: 24
0.76 0.16 0.07
Matches are distributed among these distances:
39 1 0.00
40 34 0.13
41 186 0.73
42 35 0.14
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (39 bp):
TTAGCGGCGCTTTTCAAAAACGCCGCTAAAGCCCCAGCA
Found at i:51861121 original size:124 final size:121
Alignment explanation
Indices: 51860849--51861207 Score: 382
Period size: 124 Copynumber: 2.9 Consensus size: 121
51860839 TAAAATATTT
* * * *
51860849 TTAGCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCTCAGCATTAGCAGC-ACTTTTCCAAAAATG
1 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGCCC-CAGCATTAGCGGCGCCTTTT-CAAAAATG
* * *
51860913 CCGCTAAAGCCCCCAGCATTAGCGG-CGCTTTTAAAAAACGCCACTAAAACACCGAGCA
64 CCGCTAAAGCCCCAAGCATTAGCGGCCG-TTTTTAAAAACGCCGCTAAAACACCGAGCA
** * * *
51860971 TTAGCAACGTTTTTTCAAAAACGCTGCTAAAGCCGCCAGCATTAGCGGCGCCTTTTCAAACACGC
1 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGCC-CCAGCATTAGCGGCGCCTTTTCAAAAATGC
* * * * *
51861036 CTCTAAAACCTCGAGCATTAGCGGCACGTTTTTAAAAATCGCCGCTAAAACATCG-GACA
65 CGCTAAAGCCCCAAGCATTAGCGGC-CGTTTTTAAAAA-CGCCGCTAAAACACCGAG-CA
* * * * * *
51861095 TTAGCGGCGCTTTTCCAAAAACGCTGCTAAAACACCGAGCATTAGCGGTGCATTTTCAAAAATAC
1 TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGC-CCCAGCATTAGCGGCGCCTTTTCAAAAATGC
* * *
51861160 CGCTAAAGCCCCAAGCATTAGCGGCGCTTTTTTAGAAACACCGCTAAA
65 CGCTAAAGCCCCAAGCATTAGCGGC-CGTTTTTAAAAACGCCGCTAAA
51861208 GCCCCGAAAG
Statistics
Matches: 195, Mismatches: 35, Indels: 13
0.80 0.14 0.05
Matches are distributed among these distances:
122 68 0.35
123 25 0.13
124 101 0.52
125 1 0.01
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (121 bp):
TTAGCGGCGCTTTTTCAAAAACGCTGCTAAAGCCCCAGCATTAGCGGCGCCTTTTCAAAAATGCC
GCTAAAGCCCCAAGCATTAGCGGCCGTTTTTAAAAACGCCGCTAAAACACCGAGCA
Found at i:51861206 original size:82 final size:80
Alignment explanation
Indices: 51860849--51861207 Score: 344
Period size: 82 Copynumber: 4.4 Consensus size: 80
51860839 TAAAATATTT
* * * * *
51860849 TTAGCGGTGCTTTTTCAAAAACGCCGCTAAAGCCCTCAGCATTAGCAGCAC-TTTTCCAAAAATG
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCC-GAGCATTAGCGGCGCATTTT-CAAAAATG
51860913 CCGCTAAAGCCCCCAGCA
64 CCGCTAAAG-CCCCAGCA
* * ** ** *
51860931 TTAGCGGCGC-TTTTAAAAAACGCCACTAAAACACCGAGCATTAGCAACGTTTTTTCAAAAACGC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAAC-CCGAGCATTAGCGGCGCATTTTCAAAAATGC
*
51860995 TGCTAAAGCCGCCAGCA
65 CGCTAAAGCC-CCAGCA
* * * * * *
51861012 TTAGCGGCGCCTTTTCAAACACGCCTCTAAAACCTCGAGCATTAGCGGCACGTTTTTAAAAATCG
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACC-CGAGCATTAGCGGCGCATTTTCAAAAAT-G
* ** *
51861077 CCGCTAAAACATCGGACA
64 CCGCTAAAGCCCCAG-CA
* * * *
51861095 TTAGCGGCGCTTTTCCAAAAACGCTGCTAAAACACCGAGCATTAGCGGTGCATTTTCAAAAATAC
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAAC-CCGAGCATTAGCGGCGCATTTTCAAAAATGC
51861160 CGCTAAAGCCCCAAGCA
65 CGCTAAAGCCCC-AGCA
* * *
51861177 TTAGCGGCGCTTTTTTAGAAACACCGCTAAA
1 TTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
51861208 GCCCCGAAAG
Statistics
Matches: 224, Mismatches: 44, Indels: 18
0.78 0.15 0.06
Matches are distributed among these distances:
80 2 0.01
81 62 0.28
82 95 0.42
83 64 0.29
84 1 0.00
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.22
Consensus pattern (80 bp):
TTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCGAGCATTAGCGGCGCATTTTCAAAAATGCC
GCTAAAGCCCCAGCA
Found at i:51861332 original size:41 final size:41
Alignment explanation
Indices: 51861255--51861371 Score: 123
Period size: 40 Copynumber: 2.9 Consensus size: 41
51861245 GTTTTTTGCG
**
51861255 GTTTTTTTCGAAAAACGGCGCTAATGCTC-ATTTTTAGCGGC
1 GTTTTTTT-GAAAAACACCGCTAATGCTCGATTTTTAGCGGC
* *
51861296 GTTTTTTTGAAAAACACCGCTAATGCTCGATCTTTAGTGGC
1 GTTTTTTTGAAAAACACCGCTAATGCTCGATTTTTAGCGGC
* ** *
51861337 G--ATTTCCATAAAGCACCGCTAATGCTCGATTTTTA
1 GTTTTTTTGA-AAAACACCGCTAATGCTCGATTTTTA
51861372 CCAGTGTTTT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
39 4 0.06
40 42 0.65
41 19 0.29
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.36
Consensus pattern (41 bp):
GTTTTTTTGAAAAACACCGCTAATGCTCGATTTTTAGCGGC
Found at i:51866635 original size:21 final size:20
Alignment explanation
Indices: 51866610--51866675 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 20
51866600 ATTTTTTTGA
51866610 TTTATGTAATTTTAAATAATT
1 TTTAT-TAATTTTAAATAATT
*
51866631 TTTATT--TTATTAGA-AATT
1 TTTATTAATT-TTAAATAATT
51866649 TCTTA-TAATTTTTAAATAATT
1 T-TTATTAA-TTTTAAATAATT
51866670 TTTATT
1 TTTATT
51866676 TTATTATTTC
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
18 8 0.22
19 7 0.19
20 8 0.22
21 13 0.36
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.61
Consensus pattern (20 bp):
TTTATTAATTTTAAATAATT
Found at i:51870625 original size:126 final size:126
Alignment explanation
Indices: 51870334--51870625 Score: 451
Period size: 126 Copynumber: 2.3 Consensus size: 126
51870324 TCAGGCCAAA
* *
51870334 CAGGAGCTACTGTAGCAAAAGCGCG-CCTACGTGGGATCTTCTTTCAGTACTTTTGCTGACAAAG
1 CAGGAGCTACTGTAGCAAAAGAGCGTCC-ACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAG
*
51870398 CATCCTGCTTAAAGCGTTTTTTACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
65 CATCCTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
* * * * *
51870460 CAGGAGCTACTGTAGCAAAAGTGCGTCCACGTAGAAGCTTCTTTTAGTACTTTTGCTGATAAAGC
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
* ** *
51870525 ATCCTTCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTTTTCGAAATTATTTTTT
66 ATCCTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
*
51870586 CAGGAGCTATTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
1 CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTT
51870626 TTTAAATAAA
Statistics
Matches: 150, Mismatches: 15, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
126 148 0.99
127 2 0.01
ACGTcount: A:0.26, C:0.21, G:0.20, T:0.34
Consensus pattern (126 bp):
CAGGAGCTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAAAGC
ATCCTGCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCAAAATTATTTTTT
Found at i:51870889 original size:14 final size:15
Alignment explanation
Indices: 51870823--51870890 Score: 56
Period size: 14 Copynumber: 4.7 Consensus size: 15
51870813 ATTTTTTCTT
*
51870823 TAAAACCATAAA-CC
1 TAAAACCCTAAACCC
51870837 TAAATACCCTAAAACCC
1 TAAA-ACCCT-AAACCC
*
51870854 T--AACCTTAAACCC
1 TAAAACCCTAAACCC
*
51870867 T-AAATCCTAAA-CC
1 TAAAACCCTAAACCC
51870880 TAAAACCCTAA
1 TAAAACCCTAA
51870891 CCAGCATGAG
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
13 10 0.23
14 23 0.52
15 5 0.11
16 3 0.07
17 3 0.07
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (15 bp):
TAAAACCCTAAACCC
Found at i:51883653 original size:28 final size:26
Alignment explanation
Indices: 51883604--51883661 Score: 64
Period size: 29 Copynumber: 2.1 Consensus size: 26
51883594 CAATTTCCTA
51883604 TTTAAAAAAGCTTTAATTTTTTAATTATT
1 TTTAAAAAAGCTTTAA-TTTTT-ATT-TT
*
51883633 TTTAAAAAAGTTTTCAA-TTTTATTTT
1 TTTAAAAAAGCTTT-AATTTTTATTTT
51883659 TTT
1 TTT
51883662 GAAATTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
26 5 0.19
27 3 0.11
28 4 0.15
29 13 0.48
30 2 0.07
ACGTcount: A:0.34, C:0.03, G:0.03, T:0.59
Consensus pattern (26 bp):
TTTAAAAAAGCTTTAATTTTTATTTT
Done.