Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 170 of 182
Found at i:51884770 original size:7 final size:7
Alignment explanation
Indices: 51884758--51884783 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
51884748 TGGTCGATTG
51884758 GTATTTA
1 GTATTTA
51884765 GTATTTA
1 GTATTTA
51884772 GTATTTA
1 GTATTTA
51884779 GTATT
1 GTATT
51884784 ATGTATATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:51885488 original size:96 final size:96
Alignment explanation
Indices: 51885358--51885656 Score: 322
Period size: 97 Copynumber: 3.1 Consensus size: 96
51885348 CCTAAACTCC
*
51885358 AAACCCTAATTTATTTAAGTTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTAA
1 AAACCCTAATTTATTTGA-TTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTAA
51885423 AAAAATTATAATTAATTTACTCAAGTAACCCT
65 AAAAATTATAATTAATTTACTCAAGTAACCCT
* * * *
51885455 GAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTTAACTCTAAACCCTAATCTAATTTTTTTT
1 AAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAA---TTTTT
*
51885520 AAAAAAA-T-TAATTAAATTACTCAAGTAACCCT
63 AAAAAAATTATAATTAATTTACTCAAGTAACCCT
* * * *** *
51885552 AAACCTTAATTTAATTGATTTTTTCTTAAAAAATAATAAACACGAAA-CCTAAT-TCAA-TTTT-
1 AAACCCTAATTTATTTGATTTTTACTT-AAAAACCCTAAACACTAAACCCTAATCT-AATTTTTA
* * ** **
51885613 GAAAAATTCATAATTAATTTAATTTACAAACCCT
64 AAAAAATT-ATAATTAATTTACTCAAGTAACCCT
51885647 AAACCCTAAT
1 AAACCCTAAT
51885657 CCCTTATTTA
Statistics
Matches: 170, Mismatches: 24, Indels: 18
0.80 0.11 0.08
Matches are distributed among these distances:
92 5 0.03
93 5 0.03
95 27 0.16
96 37 0.22
97 70 0.41
98 14 0.08
99 12 0.07
ACGTcount: A:0.42, C:0.18, G:0.03, T:0.37
Consensus pattern (96 bp):
AAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTAAA
AAAATTATAATTAATTTACTCAAGTAACCCT
Found at i:51885865 original size:69 final size:69
Alignment explanation
Indices: 51885754--51886099 Score: 665
Period size: 69 Copynumber: 5.0 Consensus size: 69
51885744 CCTAACCGTA
* *
51885754 GGACACACGGGTAAAACACATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
1 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
51885819 AAGG
66 AAGG
51885823 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
1 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
51885888 AAGG
66 AAGG
51885892 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
1 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
51885957 AAGG
66 AAGG
51885961 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
1 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
51886026 AAGG
66 AAGG
*
51886030 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCGCCCTT
1 GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
51886095 AAGG
66 AAGG
51886099 G
1 G
51886100 AGTGATTTTT
Statistics
Matches: 274, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 274 1.00
ACGTcount: A:0.28, C:0.25, G:0.26, T:0.21
Consensus pattern (69 bp):
GGACACACGGGCAAAACGCATCCTTGAGGAAGCGTTTTGCCTACTTGGACATAAAGTGCCCCCTT
AAGG
Found at i:51887119 original size:23 final size:23
Alignment explanation
Indices: 51887093--51887168 Score: 55
Period size: 23 Copynumber: 3.2 Consensus size: 23
51887083 GCACTACCTA
51887093 ATTAATATTAAAAATTTTAAAAC
1 ATTAATATTAAAAATTTTAAAAC
* * ** * *
51887116 ATTATTA-TAGACTTTTTCACTACC
1 ATTAATATTAAAAATTTT-A-AAAC
51887140 TTATTAATATTAAAAATTTTAAAAC
1 --ATTAATATTAAAAATTTTAAAAC
51887165 ATTA
1 ATTA
51887169 TTATAGACTT
Statistics
Matches: 36, Mismatches: 12, Indels: 10
0.62 0.21 0.17
Matches are distributed among these distances:
22 7 0.19
23 11 0.31
24 2 0.06
25 2 0.06
26 7 0.19
27 7 0.19
ACGTcount: A:0.46, C:0.09, G:0.01, T:0.43
Consensus pattern (23 bp):
ATTAATATTAAAAATTTTAAAAC
Found at i:51887146 original size:49 final size:49
Alignment explanation
Indices: 51887084--51887181 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
51887074 AATTATTCAG
51887084 CACTACCTAATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
1 CACTACCTAATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
*
51887133 CACTACCTTATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
1 CACTACCTAATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
51887182 TTTTTGCACA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (49 bp):
CACTACCTAATTAATATTAAAAATTTTAAAACATTATTATAGACTTTTT
Found at i:51888567 original size:21 final size:21
Alignment explanation
Indices: 51888542--51888588 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
51888532 AAAACATAGA
*
51888542 CGTGTGTCTAACACACACGCC
1 CGTGTGGCTAACACACACGCC
**
51888563 CGTGTGGCTAATTCACACGCC
1 CGTGTGGCTAACACACACGCC
*
51888584 TGTGT
1 CGTGT
51888589 TCCCAAACGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.19, C:0.32, G:0.23, T:0.26
Consensus pattern (21 bp):
CGTGTGGCTAACACACACGCC
Found at i:51891875 original size:15 final size:15
Alignment explanation
Indices: 51891855--51891886 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
51891845 GGCCGTATGA
51891855 TAGTTGGGCTAGGTG
1 TAGTTGGGCTAGGTG
51891870 TAGTTGGGCTAGGTG
1 TAGTTGGGCTAGGTG
51891885 TA
1 TA
51891887 ATTTTGAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.16, C:0.06, G:0.44, T:0.34
Consensus pattern (15 bp):
TAGTTGGGCTAGGTG
Found at i:51892536 original size:41 final size:41
Alignment explanation
Indices: 51892467--51892617 Score: 212
Period size: 41 Copynumber: 3.7 Consensus size: 41
51892457 TAGGCTCGAG
* * * * * *
51892467 GCCTAATACAATTACACCGGTACAAAGCCTGCTAGGCACAAA
1 GCCTAATATAAAT-CACCGGCACGAAGCCTACTAGGCACAGA
* *
51892509 GCCTGATATAAATCACCGGCATGAAGCCTACTAGGCACAGA
1 GCCTAATATAAATCACCGGCACGAAGCCTACTAGGCACAGA
*
51892550 GCCTAATATAAGTCACCGGCACGAAGCCTACTAGGCACAGA
1 GCCTAATATAAATCACCGGCACGAAGCCTACTAGGCACAGA
51892591 GCCTAATATAAATCACCGGCACGAAGC
1 GCCTAATATAAATCACCGGCACGAAGC
51892618 TTGCTAAACT
Statistics
Matches: 97, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
41 87 0.90
42 10 0.10
ACGTcount: A:0.36, C:0.28, G:0.20, T:0.16
Consensus pattern (41 bp):
GCCTAATATAAATCACCGGCACGAAGCCTACTAGGCACAGA
Found at i:51897855 original size:3 final size:3
Alignment explanation
Indices: 51897849--51897893 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
51897839 TAAAAAAAAG
* * * *
51897849 TAA TAA TAA TAA TGA TAA TAA TAT TAA TAA TAA CAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51897894 AAAAAATCTG
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:51899568 original size:50 final size:50
Alignment explanation
Indices: 51899461--51899557 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
51899451 TCTGGGAAAC
* * * **
51899461 AAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTACACTGCCCGAGAAGT
1 AAGATTTGCTGTTGTAGCTTCAATCTATTCCACTACAATGCCAAAGAAGT
**
51899511 AAGATTTGCTGTTGTAGCTTCAATCTATTCCACTGTAATGCCAAAGA
1 AAGATTTGCTGTTGTAGCTTCAATCTATTCCACTACAATGCCAAAGA
51899558 GATAGGATTT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.32
Consensus pattern (50 bp):
AAGATTTGCTGTTGTAGCTTCAATCTATTCCACTACAATGCCAAAGAAGT
Found at i:51899951 original size:132 final size:132
Alignment explanation
Indices: 51899813--51900187 Score: 495
Period size: 132 Copynumber: 2.8 Consensus size: 132
51899803 TGCTGCTCAG
* * *
51899813 GGAGACATGATTTACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAGGACTGGTGGCTTA
1 GGAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTA
* * * * *
51899878 AATCTGCTTCTCTACTACCTTGAGAAGATAAGATTTGCCGTTTTCGATCTA-CTCCACT-ACTGT
66 AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATC-AGCTCCACTGACAG-
51899941 TTAC-
129 -TACA
* * * *
51899945 GGAGACAGGATCTACAATCTTCAACCTACTCCACTGTTGCTCAGGGAGATAAGATTGGTGGCTTA
1 GGAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTA
* * * * * *
51900010 AATCTGCTTCCCTACTTCTTTGGGAAGATAAGATTCGCAGCCTTCGATCAGCTCCGCTGTCAGTA
66 AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCAGCTCCACTGACAGTA
51900075 CA
131 CA
* * * *
51900077 GGAAGGCAAGATCTGCTATCTTCAACCTACTCCACTGCTGCTTAGGGAGATAGGACTGGTGGCTT
1 GG-AGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTT
51900142 AAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTC
65 AAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTC
51900188 TCCAATCCAC
Statistics
Matches: 210, Mismatches: 29, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
131 4 0.02
132 108 0.51
133 98 0.47
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (132 bp):
GGAGACAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGACTGGTGGCTTA
AATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCAGCTCCACTGACAGTA
CA
Found at i:51904918 original size:11 final size:11
Alignment explanation
Indices: 51904902--51904934 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
51904892 CGATGGGTAC
51904902 CAAAGAATATA
1 CAAAGAATATA
51904913 CAAAGAATATA
1 CAAAGAATATA
51904924 CAAAGAATATA
1 CAAAGAATATA
51904935 TGAATTTATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.64, C:0.09, G:0.09, T:0.18
Consensus pattern (11 bp):
CAAAGAATATA
Found at i:51912679 original size:3 final size:3
Alignment explanation
Indices: 51912618--51912662 Score: 54
Period size: 3 Copynumber: 15.0 Consensus size: 3
51912608 TTCAAAAAAG
* * * *
51912618 TAA TAA TAA TAA TGA TAA TAA TAT TAA TAA TAA CAA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
51912663 AAAAATCTGA
Statistics
Matches: 34, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:51912782 original size:16 final size:16
Alignment explanation
Indices: 51912761--51912796 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
51912751 TTTGGTTCGC
51912761 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
51912777 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
51912793 TGTA
1 TGTA
51912797 ATAGCTAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.36, T:0.39
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:51912861 original size:44 final size:45
Alignment explanation
Indices: 51912777--51912867 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
51912767 GGATTAGAGG
* * *
51912777 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
51912822 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
51912866 TG
1 TG
51912868 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:51913053 original size:18 final size:19
Alignment explanation
Indices: 51913032--51913068 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
51913022 TTATTATTAA
51913032 ATAT-ATTT-TAATTAAAAT
1 ATATAATTTATAA-TAAAAT
51913050 ATATAATTTATAATAAAAT
1 ATATAATTTATAATAAAAT
51913069 TCTTAATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 4 0.24
19 10 0.59
20 3 0.18
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
ATATAATTTATAATAAAAT
Found at i:51913233 original size:120 final size:120
Alignment explanation
Indices: 51913012--51913301 Score: 438
Period size: 120 Copynumber: 2.4 Consensus size: 120
51913002 TTAATCATAT
*
51913012 TTTAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTATAATAAAATTCTTAATA
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAA-TT-TAATAAAATTCTTAATA
* * *
51913077 ATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA
64 ATAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* * *
51913134 -TTAGAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATTCTTAATAT
1 TTTA-AAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAA
*
51913198 TAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
65 TAAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
* ** *
51913254 TTTAACATAATTATTATTAAATATAAGTTAATAAAAATATATAATTTA
1 TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTA
51913302 TCATCATACT
Statistics
Matches: 152, Mismatches: 14, Indels: 6
0.88 0.08 0.03
Matches are distributed among these distances:
120 107 0.70
121 8 0.05
122 37 0.24
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
TTTAAAATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
AAATATTCTTATATGAATTTACTAAAATCATAATATATAATACTATAAAATATAA
Found at i:51925116 original size:15 final size:15
Alignment explanation
Indices: 51925096--51925142 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
51925086 ACAAAATCTC
*
51925096 ATAAAAACATAGTTT
1 ATAAAAACATACTTT
*
51925111 ATAAAACCATACTTT
1 ATAAAAACATACTTT
51925126 A-AAAATACATATCTTT
1 ATAAAA-ACATA-CTTT
51925142 A
1 A
51925143 AAATATAAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 4 0.15
15 18 0.67
16 5 0.19
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (15 bp):
ATAAAAACATACTTT
Found at i:51925189 original size:13 final size:13
Alignment explanation
Indices: 51925171--51925202 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
51925161 GAGCACGTAT
51925171 AAAACATAACTTG
1 AAAACATAACTTG
*
51925184 AAAACATGACTTG
1 AAAACATAACTTG
51925197 AAAACA
1 AAAACA
51925203 GAGTTTATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.09, T:0.19
Consensus pattern (13 bp):
AAAACATAACTTG
Found at i:51927652 original size:84 final size:83
Alignment explanation
Indices: 51927506--51927716 Score: 260
Period size: 84 Copynumber: 2.5 Consensus size: 83
51927496 CCTCGGCCTC
* * * * * * *
51927506 TCCAGCTCCGGAAACTTCTCCCTCGCCAGCCGAAACCCCGGAATTGGCTCTAGAAACTTCGCCTT
1 TCCAGCTCCCGAAACTTCTCCCT-GCCAACAGAAACCCCGGAAATAGCTCCAGAAACCTCGCCTT
*
51927571 CTTTCCCACCATCCGTGTA
65 CTCTCCCACCATCCGTGTA
** *
51927590 TCCAGCTCCCGAAACTTCTCCCATGCCAATGGAAACCCCGGAAATAGTTCCAGAAACCTCGCCTT
1 TCCAGCTCCCGAAACTTCTCCC-TGCCAACAGAAACCCCGGAAATAGCTCCAGAAACCTCGCCTT
51927655 CTCTCCCACCATCCGTGTA
65 CTCTCCCACCATCCGTGTA
** * *
51927674 TCTGGCCCCCGAAACTTCTCCCTTGCCAACAGAAAACCCGGAA
1 TCCAGCTCCCGAAACTTCTCCC-TGCCAACAGAAACCCCGGAA
51927717 GCAGCTCCTG
Statistics
Matches: 109, Mismatches: 17, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
84 108 0.99
85 1 0.01
ACGTcount: A:0.24, C:0.39, G:0.16, T:0.21
Consensus pattern (83 bp):
TCCAGCTCCCGAAACTTCTCCCTGCCAACAGAAACCCCGGAAATAGCTCCAGAAACCTCGCCTTC
TCTCCCACCATCCGTGTA
Found at i:51928466 original size:20 final size:21
Alignment explanation
Indices: 51928443--51928482 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
51928433 AAAAGCATAG
*
51928443 CAATT-AATTAAAAACTTTAT
1 CAATTCAATCAAAAACTTTAT
*
51928463 CAATTCAATCAAAAATTTTA
1 CAATTCAATCAAAAACTTTA
51928483 AAAATATAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (21 bp):
CAATTCAATCAAAAACTTTAT
Found at i:51934243 original size:31 final size:31
Alignment explanation
Indices: 51934204--51934273 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
51934194 AAATGAGTAC
51934204 ATTTTTATTATATA-TA-TAACTAGTAAAAAG
1 ATTTTTATTATATATTATTAACTAGT-AAAAG
* *
51934234 ATATTTTATTATTTATTATTAATTAGTAAAAG
1 AT-TTTTATTATATATTATTAACTAGTAAAAG
51934266 ATTTTTAT
1 ATTTTTAT
51934274 ATGATAAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
30 2 0.06
31 17 0.49
32 9 0.26
33 7 0.20
ACGTcount: A:0.41, C:0.01, G:0.06, T:0.51
Consensus pattern (31 bp):
ATTTTTATTATATATTATTAACTAGTAAAAG
Found at i:51934383 original size:18 final size:19
Alignment explanation
Indices: 51934360--51934405 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
51934350 TGTAATATTT
*
51934360 ATATTTGTTATTA-AATAG
1 ATATTTATTATTATAATAG
51934378 ATATTTATTATTATAATA-
1 ATATTTATTATTATAATAG
*
51934396 ATAATTATTA
1 ATATTTATTA
51934406 ATTGTTGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (19 bp):
ATATTTATTATTATAATAG
Found at i:51934569 original size:20 final size:20
Alignment explanation
Indices: 51934546--51934583 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
51934536 TACTTAATAT
51934546 TTAAG-AAATAATAATAATTA
1 TTAAGTAAAT-ATAATAATTA
*
51934566 TTAAGTTAATATAATAAT
1 TTAAGTAAATATAATAAT
51934584 ATAATAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 13 0.81
21 3 0.19
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.39
Consensus pattern (20 bp):
TTAAGTAAATATAATAATTA
Found at i:51934872 original size:29 final size:29
Alignment explanation
Indices: 51934831--51934888 Score: 66
Period size: 29 Copynumber: 2.0 Consensus size: 29
51934821 TTTTTTAGTA
51934831 GGGTTCATGTTGAATA-AATGATTGAATTAG
1 GGGTTCATGTTG-ATAGAATGATTG-ATTAG
* *
51934861 GGGTTTAT-TTGATAGAATTATTGATTAG
1 GGGTTCATGTTGATAGAATGATTGATTAG
51934889 ATTTATTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
28 8 0.32
29 10 0.40
30 7 0.28
ACGTcount: A:0.31, C:0.02, G:0.26, T:0.41
Consensus pattern (29 bp):
GGGTTCATGTTGATAGAATGATTGATTAG
Found at i:51941501 original size:43 final size:43
Alignment explanation
Indices: 51941420--51941502 Score: 105
Period size: 42 Copynumber: 1.9 Consensus size: 43
51941410 TTTATTGACT
* *
51941420 TATGAAATAAAAATACCCTCATAAAAATATAATTTAATTTCTC
1 TATGAAATAAAAACACCCTCATAAAAATATAATATAATTTCTC
* * *
51941463 TATGATAT-AAAACACCTTCATAAAAATCTAAATATAATTT
1 TATGAAATAAAAACACCCTCATAAAAATAT-AATATAATTT
51941503 TTTATAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 18 0.53
43 16 0.47
ACGTcount: A:0.49, C:0.13, G:0.02, T:0.35
Consensus pattern (43 bp):
TATGAAATAAAAACACCCTCATAAAAATATAATATAATTTCTC
Found at i:51943971 original size:18 final size:19
Alignment explanation
Indices: 51943939--51943978 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
51943929 TTAAAAGATT
*
51943939 TTTAATATTTAAAATAGAA
1 TTTAAAATTTAAAATAGAA
51943958 TTTAAAATTT-AAATAGAA
1 TTTAAAATTTAAAATAGAA
51943976 TTT
1 TTT
51943979 TTTAAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (19 bp):
TTTAAAATTTAAAATAGAA
Found at i:51961506 original size:19 final size:20
Alignment explanation
Indices: 51961479--51961526 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 20
51961469 GTTGGTAAAT
*
51961479 ACATGTGTA-ATAATAATAA
1 ACATATGTATATAATAATAA
*
51961498 ACATATGTATTTAATAATAA
1 ACATATGTATATAATAATAA
51961518 A-ATATGTAT
1 ACATATGTAT
51961527 TGCTTATTAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (20 bp):
ACATATGTATATAATAATAA
Found at i:51961527 original size:19 final size:20
Alignment explanation
Indices: 51961489--51961527 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
51961479 ACATGTGTAA
51961489 TAATAATAAACATATGTATT
1 TAATAATAAACATATGTATT
51961509 TAATAATAAA-ATATGTATT
1 TAATAATAAACATATGTATT
51961528 GCTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
TAATAATAAACATATGTATT
Found at i:51961561 original size:8 final size:8
Alignment explanation
Indices: 51961548--51961583 Score: 72
Period size: 8 Copynumber: 4.5 Consensus size: 8
51961538 TAAGTAAATA
51961548 TATATTAT
1 TATATTAT
51961556 TATATTAT
1 TATATTAT
51961564 TATATTAT
1 TATATTAT
51961572 TATATTAT
1 TATATTAT
51961580 TATA
1 TATA
51961584 ATTAAAACTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
TATATTAT
Found at i:51968837 original size:57 final size:57
Alignment explanation
Indices: 51968768--51968884 Score: 225
Period size: 57 Copynumber: 2.1 Consensus size: 57
51968758 CATAGAATAC
51968768 ATGAGTTAAATACTCATGAACTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
1 ATGAGTTAAATACTCATGAACTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
*
51968825 ATGAGTTAAATACTCATGAATTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
1 ATGAGTTAAATACTCATGAACTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
51968882 ATG
1 ATG
51968885 TGAACCAATT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.34
Consensus pattern (57 bp):
ATGAGTTAAATACTCATGAACTGAATATGGAATGGATAGTGCCATTGTTTAAATGAT
Found at i:51972060 original size:18 final size:18
Alignment explanation
Indices: 51972039--51972080 Score: 75
Period size: 18 Copynumber: 2.3 Consensus size: 18
51972029 TTAAAATAAA
*
51972039 ATTTTATGCTAAAATTTT
1 ATTTAATGCTAAAATTTT
51972057 ATTTAATGCTAAAATTTT
1 ATTTAATGCTAAAATTTT
51972075 ATTTAA
1 ATTTAA
51972081 ATAGGTGGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.52
Consensus pattern (18 bp):
ATTTAATGCTAAAATTTT
Found at i:51975745 original size:171 final size:170
Alignment explanation
Indices: 51975455--51975785 Score: 563
Period size: 171 Copynumber: 1.9 Consensus size: 170
51975445 AAAGAGTTCC
* * * *
51975455 AGAATGGGAAAAAGGCAATGTTAGAAGAAATTTCAACACTCAACAAGAATGACATGTGAGAGCTT
1 AGAAAGGGAAAAAGGCAATGGTAGAAGAAATTTCAACACTCAACAAGAATGACACGTGAAAGCTT
*
51975520 GTACCAAAATCATTGGATGCTGATTTTGTTGCCTGTAAATGGGTTTACAAATTAAAAAAAATGAG
66 GTACCAAAATCATTGGATGCTGATTTTGTTACCTGTAAATGGGTTTACAAATT-AAAAAAATGAG
*
51975585 TTGATGGTACAATCGAGAGGTCCAAATCTCGATTTTGTACT
130 TTGATGGTACAATCGAGAGGTACAAATCTCGATTTTGTACT
*
51975626 AGAAAGGGAAAAATGCAATGGTAGAAGAAATTTCAACACTCAACAAGAATGACACGTGAAAGCTT
1 AGAAAGGGAAAAAGGCAATGGTAGAAGAAATTTCAACACTCAACAAGAATGACACGTGAAAGCTT
* *
51975691 GTACCAAAATCATTGGATGTTGATTTTGTTACTTGTAAATGGGTTTACAAATTAAAAAAATGAGT
66 GTACCAAAATCATTGGATGCTGATTTTGTTACCTGTAAATGGGTTTACAAATTAAAAAAATGAGT
*
51975756 TGATGGTACAATCGAGAGGTATAAATCTCG
131 TGATGGTACAATCGAGAGGTACAAATCTCG
51975786 CCTTGTTGCT
Statistics
Matches: 150, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
170 40 0.27
171 110 0.73
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.27
Consensus pattern (170 bp):
AGAAAGGGAAAAAGGCAATGGTAGAAGAAATTTCAACACTCAACAAGAATGACACGTGAAAGCTT
GTACCAAAATCATTGGATGCTGATTTTGTTACCTGTAAATGGGTTTACAAATTAAAAAAATGAGT
TGATGGTACAATCGAGAGGTACAAATCTCGATTTTGTACT
Found at i:51980238 original size:11 final size:13
Alignment explanation
Indices: 51980222--51980250 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
51980212 GAATTTTTTT
51980222 AAAAAAA-AGTAA
1 AAAAAAACAGTAA
51980234 AAAAAAACAGTAA
1 AAAAAAACAGTAA
51980247 AAAA
1 AAAA
51980251 TAGTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.44
13 9 0.56
ACGTcount: A:0.83, C:0.03, G:0.07, T:0.07
Consensus pattern (13 bp):
AAAAAAACAGTAA
Found at i:51980635 original size:16 final size:17
Alignment explanation
Indices: 51980596--51980636 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
51980586 ATATTAAAAA
51980596 TATAATTTTATTATTTC
1 TATAATTTTATTATTTC
* *
51980613 AAT-ATTTTA-TATTTT
1 TATAATTTTATTATTTC
51980628 TATAATTTT
1 TATAATTTT
51980637 TAAAAGATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
15 7 0.35
16 11 0.55
17 2 0.10
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (17 bp):
TATAATTTTATTATTTC
Found at i:51982079 original size:4 final size:4
Alignment explanation
Indices: 51982070--51982099 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
51982060 CAGAAGGGAA
51982070 AAAG AAAG AAA- AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
51982100 AGGAGCAAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:51982082 original size:11 final size:11
Alignment explanation
Indices: 51982068--51982099 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
51982058 AACAGAAGGG
51982068 AAAAAGAAAGA
1 AAAAAGAAAGA
51982079 AAAAAGAAAGA
1 AAAAAGAAAGA
51982090 AAGAAAGAAA
1 AA-AAAGAAA
51982100 AGGAGCAAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.65
12 7 0.35
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (11 bp):
AAAAAGAAAGA
Found at i:51982809 original size:15 final size:15
Alignment explanation
Indices: 51982789--51982838 Score: 57
Period size: 15 Copynumber: 3.2 Consensus size: 15
51982779 TGATAAATTT
51982789 ATTGAATTTATATTG
1 ATTGAATTTATATTG
51982804 ATTGAATTGGTATATAT-
1 ATTGAATT--TATAT-TG
*
51982821 ATTGAATATATATTG
1 ATTGAATTTATATTG
51982836 ATT
1 ATT
51982839 ATTTGAATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
14 1 0.03
15 16 0.53
17 12 0.40
18 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.14, T:0.50
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:51984785 original size:42 final size:42
Alignment explanation
Indices: 51984678--51984785 Score: 155
Period size: 42 Copynumber: 2.6 Consensus size: 42
51984668 TACACCGACT
* * * *
51984678 TTAAGCTTGCTAGACTTATAGTCCGAATTTATTTCGCCGGCA
1 TTAAGCCTGCTAGACATAAAGTCTGAATTTATTTCGCCGGCA
51984720 TTAAGCCTGCTAGACATAAAGTCTGAATTTATTT-GACCGGCA
1 TTAAGCCTGCTAGACATAAAGTCTGAATTTATTTCG-CCGGCA
*
51984762 TTAAGCCTGCTAGACGTAAAGTCT
1 TTAAGCCTGCTAGACATAAAGTCT
51984786 AAATGGTTTC
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
41 1 0.02
42 59 0.98
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (42 bp):
TTAAGCCTGCTAGACATAAAGTCTGAATTTATTTCGCCGGCA
Found at i:51996625 original size:51 final size:51
Alignment explanation
Indices: 51996561--51996802 Score: 260
Period size: 51 Copynumber: 4.8 Consensus size: 51
51996551 TAAGGTATCG
* * * *
51996561 ATGAACACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATG
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATA
* * * * *
51996612 ATGGTCACATGTGTAGTACTAAGTGAAGGCTACTATGTGTATCGA-AAAGTT
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAA-TA
* * * *
51996663 TTGGTCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA-CCATAAA-A
1 ATGATCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATA
* *
51996712 ACTTGATCACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACCG-TAAA-A
1 A--TGATCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATA
* *
51996763 CTTGATCACATGTGTAGTACTATGTGGAGGCTACTACGTG
1 -ATGATCACATGTGTAGTACTATGTGAAGGCTACTACGTG
51996803 TATTGAATGA
Statistics
Matches: 164, Mismatches: 21, Indels: 13
0.83 0.11 0.07
Matches are distributed among these distances:
50 41 0.25
51 122 0.74
52 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.26, T:0.29
Consensus pattern (51 bp):
ATGATCACATGTGTAGTACTATGTGAAGGCTACTACGTGAATCGATAAATA
Found at i:51996742 original size:102 final size:101
Alignment explanation
Indices: 51996566--51996802 Score: 300
Period size: 102 Copynumber: 2.3 Consensus size: 101
51996556 TATCGATGAA
* * * *
51996566 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCCATAAATAATGATCACATGTGTAGTAC
* * * * *
51996631 TAAGTGAAGGCTACTATGTGTATCG-AAAAGTTTTGGT
66 TAAGTGAAGGCTACTACGTGAACCGTAAAA--CTTGAT
*
51996668 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAA-CCATAAA-AACTTGATCACGTGTGTAGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCCATAAATAA--TGATCACATGTGTAGT
*
51996731 ACTATGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
64 ACTAAGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
* *
51996769 CACATGTGTAGTACTATGTGGAGGCTACTACGTG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG
51996803 TATTGAATGA
Statistics
Matches: 119, Mismatches: 13, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
100 1 0.01
101 42 0.35
102 72 0.61
103 4 0.03
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAATCCATAAATAATGATCACATGTGTAGTAC
TAAGTGAAGGCTACTACGTGAACCGTAAAACTTGAT
Found at i:52004111 original size:20 final size:20
Alignment explanation
Indices: 52004083--52004125 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
52004073 GGGTTATGGG
52004083 CACGAGCGTGTAGAGGGCCA
1 CACGAGCGTGTAGAGGGCCA
* *
52004103 CACGGGCGTGTGGAGGGCCA
1 CACGAGCGTGTAGAGGGCCA
52004123 CAC
1 CAC
52004126 TGGAATGTGG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.21, C:0.28, G:0.42, T:0.09
Consensus pattern (20 bp):
CACGAGCGTGTAGAGGGCCA
Found at i:52004134 original size:20 final size:20
Alignment explanation
Indices: 52004095--52004136 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
52004085 CGAGCGTGTA
**
52004095 GAGGGCCACACGGGCGTGTG
1 GAGGGCCACACGGGAATGTG
*
52004115 GAGGGCCACACTGGAATGTG
1 GAGGGCCACACGGGAATGTG
52004135 GA
1 GA
52004137 ATAGTCACAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.21, C:0.21, G:0.45, T:0.12
Consensus pattern (20 bp):
GAGGGCCACACGGGAATGTG
Found at i:52015649 original size:21 final size:21
Alignment explanation
Indices: 52015610--52015649 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
52015600 GAGCTATCAT
**
52015610 ACATGGACGTGTGGGATTTCC
1 ACATGGACGTGTGCAATTTCC
*
52015631 ACATGGGCGTGTGCAATTT
1 ACATGGACGTGTGCAATTT
52015650 GCTTAAAAGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (21 bp):
ACATGGACGTGTGCAATTTCC
Found at i:52018957 original size:29 final size:28
Alignment explanation
Indices: 52018906--52018961 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
52018896 TTGATAAAAA
*
52018906 TGTAAATTAAGGATTAAATTGTGAAATG
1 TGTAAATTAAGGATTAAAATGTGAAATG
52018934 TGTAAATTGAATGG-TTAAAATGTGAAAT
1 TGTAAATT-AA-GGATTAAAATGTGAAAT
52018962 AAATGCAAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 8 0.32
29 15 0.60
30 2 0.08
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (28 bp):
TGTAAATTAAGGATTAAAATGTGAAATG
Found at i:52019510 original size:31 final size:31
Alignment explanation
Indices: 52019475--52019567 Score: 79
Period size: 30 Copynumber: 3.0 Consensus size: 31
52019465 AAATAATTTT
52019475 TATATGGTTATTCATTGTTGAAATTGAATTG
1 TATATGGTTATTCATTGTTGAAATTGAATTG
* *
52019506 TATAT-G-TATATAAGCTGTTGAAA-TG-ATTCG
1 TATATGGTTAT-TCA-TTGTTGAAATTGAATT-G
* *
52019536 TATATGGTTCA-ACATTGTTGAAATTAAATTG
1 TATATGGTT-ATTCATTGTTGAAATTGAATTG
52019567 T
1 T
52019568 TCATGAATAT
Statistics
Matches: 48, Mismatches: 6, Indels: 16
0.69 0.09 0.23
Matches are distributed among these distances:
29 6 0.12
30 19 0.40
31 18 0.38
32 4 0.08
33 1 0.02
ACGTcount: A:0.32, C:0.05, G:0.18, T:0.44
Consensus pattern (31 bp):
TATATGGTTATTCATTGTTGAAATTGAATTG
Found at i:52019550 original size:92 final size:91
Alignment explanation
Indices: 52019388--52019558 Score: 261
Period size: 92 Copynumber: 1.9 Consensus size: 91
52019378 GAATTGTTTT
* *
52019388 TGGTTATACATTGTTGATATTGAATTGTATATTACATAAGTTGCCGAAATGATTCGTATATGGTT
1 TGGTTATACATTGTTGAAATTGAATTGTATATTACATAAGCTGCCGAAATGATTCGTATATGGTT
*
52019453 GAACATTGCTGAAAATAATTTTTATA
66 CAACATTGCTGAAAATAATTTTTATA
* * **
52019479 TGGTTATTCATTGTTGAAATTGAATTGTATATGTATATAAGCTGTTGAAATGATTCGTATATGGT
1 TGGTTATACATTGTTGAAATTGAATTGTATAT-TACATAAGCTGCCGAAATGATTCGTATATGGT
*
52019544 TCAACATTGTTGAAA
65 TCAACATTGCTGAAA
52019559 TTAAATTGTT
Statistics
Matches: 71, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
91 30 0.42
92 41 0.58
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (91 bp):
TGGTTATACATTGTTGAAATTGAATTGTATATTACATAAGCTGCCGAAATGATTCGTATATGGTT
CAACATTGCTGAAAATAATTTTTATA
Found at i:52019675 original size:61 final size:63
Alignment explanation
Indices: 52019590--52019721 Score: 146
Period size: 61 Copynumber: 2.1 Consensus size: 63
52019580 GATGCTGAAT
* * *
52019590 TTGATTTGTATATGATTATACATTGCCAAAT-TAGATTCTTATATG-GT-TATATATTGCCGAA
1 TTGATTGGTATATGATTATACATTGCCAAATCT-GATTCGTATATGAATATATATATTGCCGAA
* * * * *
52019651 TTGCTTGGTATATCGA-TATTCATTGTCGAATCTGATTCGTATATGAATATATATATTGCTGAA
1 TTGATTGGTATAT-GATTATACATTGCCAAATCTGATTCGTATATGAATATATATATTGCCGAA
52019714 TTGATTGG
1 TTGATTGG
52019722 AGCATTAGAT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
61 34 0.59
62 4 0.07
63 20 0.34
ACGTcount: A:0.29, C:0.10, G:0.17, T:0.44
Consensus pattern (63 bp):
TTGATTGGTATATGATTATACATTGCCAAATCTGATTCGTATATGAATATATATATTGCCGAA
Found at i:52030785 original size:2 final size:2
Alignment explanation
Indices: 52030778--52030814 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
52030768 CTTCACTGAG
52030778 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
52030815 CCATTTCCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:52034055 original size:37 final size:37
Alignment explanation
Indices: 52034014--52034087 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
52034004 CATTTCCAGA
*
52034014 ATTTCCAAACTGTAAATTTT-CGACTTTACCGGCATT
1 ATTTCCAAACTATAAATTTTACGACTTTACCGGCATT
*
52034050 NATTTCCAAACTATAAATTTTACGACTTTACTGGCATT
1 -ATTTCCAAACTATAAATTTTACGACTTTACCGGCATT
52034088 CCTGGTTCAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
37 19 0.56
38 15 0.44
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.39
Consensus pattern (37 bp):
ATTTCCAAACTATAAATTTTACGACTTTACCGGCATT
Found at i:52035563 original size:14 final size:14
Alignment explanation
Indices: 52035546--52035595 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
52035536 TGGATTAAAG
52035546 CTTAATTAAATTAA
1 CTTAATTAAATTAA
*
52035560 CTTAATTAACATAAA
1 CTTAATTAA-ATTAA
* *
52035575 CATAATTTAATTAA
1 CTTAATTAAATTAA
52035589 CTTAATT
1 CTTAATT
52035596 CAACATTAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
14 19 0.63
15 11 0.37
ACGTcount: A:0.48, C:0.10, G:0.00, T:0.42
Consensus pattern (14 bp):
CTTAATTAAATTAA
Found at i:52037088 original size:211 final size:211
Alignment explanation
Indices: 52036724--52037145 Score: 835
Period size: 211 Copynumber: 2.0 Consensus size: 211
52036714 TATTCTCGTT
52036724 CCTCGTGACTTCACTCTTTTGAAAAATTCAAACCCTAACCTCTGCAATTTCGACCGATTTTCAGT
1 CCTCGTGACTTCACTCTTTTGAAAAATTCAAACCCTAACCTCTGCAATTTCGACCGATTTTCAGT
*
52036789 GATTAGAAACAAAATTATTATCATAATTTTCATGGAAACCAGATCCGCAAAACGAAAGAAGTATT
66 GATTAGAAACAAAATTATTATAATAATTTTCATGGAAACCAGATCCGCAAAACGAAAGAAGTATT
52036854 GGTTGGAAGGCGAGAATGGAATCGATAGAATTAGTGATCTCCCAGACGTTGTTCTTCATCAAATT
131 GGTTGGAAGGCGAGAATGGAATCGATAGAATTAGTGATCTCCCAGACGTTGTTCTTCATCAAATT
52036919 CTTTTTCATTTACCCA
196 CTTTTTCATTTACCCA
52036935 CCTCGTGACTTCACTCTTTTGAAAAATTCAAACCCTAACCTCTGCAATTTCGACCGATTTTCAGT
1 CCTCGTGACTTCACTCTTTTGAAAAATTCAAACCCTAACCTCTGCAATTTCGACCGATTTTCAGT
52037000 GATTAGAAACAAAATTATTATAATAATTTTCATGGAAACCAGATCCGCAAAACGAAAGAAGTATT
66 GATTAGAAACAAAATTATTATAATAATTTTCATGGAAACCAGATCCGCAAAACGAAAGAAGTATT
52037065 GGTTGGAAGGCGAGAATGGAATCGATAGAATTAGTGATCTCCCAGACGTTGTTCTTCATCAAATT
131 GGTTGGAAGGCGAGAATGGAATCGATAGAATTAGTGATCTCCCAGACGTTGTTCTTCATCAAATT
52037130 CTTTTTCATTTACCCA
196 CTTTTTCATTTACCCA
52037146 TCAAATCCAT
Statistics
Matches: 210, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
211 210 1.00
ACGTcount: A:0.33, C:0.20, G:0.16, T:0.31
Consensus pattern (211 bp):
CCTCGTGACTTCACTCTTTTGAAAAATTCAAACCCTAACCTCTGCAATTTCGACCGATTTTCAGT
GATTAGAAACAAAATTATTATAATAATTTTCATGGAAACCAGATCCGCAAAACGAAAGAAGTATT
GGTTGGAAGGCGAGAATGGAATCGATAGAATTAGTGATCTCCCAGACGTTGTTCTTCATCAAATT
CTTTTTCATTTACCCA
Found at i:52039140 original size:26 final size:27
Alignment explanation
Indices: 52039089--52039140 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
52039079 ATGGTGACAG
52039089 TTTTTATGGTGACTTTCTCTAGATACAA
1 TTTTTATGGTGAC-TTCTCTAGATACAA
52039117 TTTTTATGGTGAC-TCTCTAGATAC
1 TTTTTATGGTGACTTCTCTAGATAC
52039141 CAGGTTCCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 11 0.46
28 13 0.54
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (27 bp):
TTTTTATGGTGACTTCTCTAGATACAA
Found at i:52039316 original size:9 final size:9
Alignment explanation
Indices: 52039304--52039330 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
52039294 TAATTAAACT
52039304 CTTTAATTA
1 CTTTAATTA
52039313 CTTTAATTA
1 CTTTAATTA
52039322 CTTTAATTA
1 CTTTAATTA
52039331 ATTCTCTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.00, T:0.56
Consensus pattern (9 bp):
CTTTAATTA
Found at i:52039430 original size:22 final size:24
Alignment explanation
Indices: 52039384--52039430 Score: 62
Period size: 26 Copynumber: 2.0 Consensus size: 24
52039374 GGTCAAATCT
52039384 CTGATTCAATTAAGTCTATAAACTCA
1 CTGATTCAATTAA--CTATAAACTCA
52039410 CTGATTCAATTAA-T-TAAACTC
1 CTGATTCAATTAACTATAAACTC
52039431 TCTTGATTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
22 7 0.33
23 1 0.05
26 13 0.62
ACGTcount: A:0.38, C:0.19, G:0.06, T:0.36
Consensus pattern (24 bp):
CTGATTCAATTAACTATAAACTCA
Found at i:52062837 original size:30 final size:30
Alignment explanation
Indices: 52062793--52062849 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
52062783 CATGGGCTGG
* *
52062793 CACATGGGCATGTGTCCATCCCATGTGTAT
1 CACATGAGCATGTGTCCAGCCCATGTGTAT
* *
52062823 CACATGAGCGTGTGTCTAGCCCATGTG
1 CACATGAGCATGTGTCCAGCCCATGTG
52062850 GCTCTTGAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.19, C:0.26, G:0.26, T:0.28
Consensus pattern (30 bp):
CACATGAGCATGTGTCCAGCCCATGTGTAT
Found at i:52064671 original size:6 final size:6
Alignment explanation
Indices: 52064660--52064725 Score: 60
Period size: 6 Copynumber: 10.5 Consensus size: 6
52064650 CAAGTCTAAG
* * *
52064660 AAAATA AAAATAA AACAACTA AAAATA AAAATA AACATA AACATA AAAAGA
1 AAAATA AAAAT-A AA-AA-TA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
52064711 AAAAGA GAAATA AAA
1 AAAATA AAAATA AAA
52064726 CAAATAAAAT
Statistics
Matches: 51, Mismatches: 6, Indels: 6
0.81 0.10 0.10
Matches are distributed among these distances:
6 40 0.78
7 5 0.10
8 5 0.10
9 1 0.02
ACGTcount: A:0.77, C:0.06, G:0.05, T:0.12
Consensus pattern (6 bp):
AAAATA
Found at i:52070123 original size:6 final size:6
Alignment explanation
Indices: 52070114--52070150 Score: 65
Period size: 6 Copynumber: 6.0 Consensus size: 6
52070104 AATTATAATG
52070114 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TATAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TA-AAAA
52070151 AATGGCTAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 26 0.87
7 4 0.13
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:52079396 original size:26 final size:26
Alignment explanation
Indices: 52079360--52079412 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
52079350 TGGAGGACCC
52079360 TATCTCGATGTTCTACTCTTAATGTT
1 TATCTCGATGTTCTACTCTTAATGTT
*
52079386 TATCTCGATGTTTTACTCTTAATGTT
1 TATCTCGATGTTCTACTCTTAATGTT
52079412 T
1 T
52079413 GTTATTTTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.17, G:0.11, T:0.53
Consensus pattern (26 bp):
TATCTCGATGTTCTACTCTTAATGTT
Found at i:52079412 original size:14 final size:14
Alignment explanation
Indices: 52079367--52079412 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
52079357 CCCTATCTCG
*
52079367 ATGTTCTACTCTTA
1 ATGTTTTACTCTTA
**
52079381 ATG-TTTA-TCTCG
1 ATGTTTTACTCTTA
52079393 ATGTTTTACTCTTA
1 ATGTTTTACTCTTA
52079407 ATGTTT
1 ATGTTT
52079413 GTTATTTTAG
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
12 6 0.24
13 7 0.28
14 12 0.48
ACGTcount: A:0.20, C:0.15, G:0.11, T:0.54
Consensus pattern (14 bp):
ATGTTTTACTCTTA
Found at i:52090981 original size:26 final size:25
Alignment explanation
Indices: 52090933--52090990 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 25
52090923 ATCGCTCCAA
*
52090933 GAAAGAGAAAATTCTTGAAAGAAATC
1 GAAAGAGAAAATTCTTG-AAGAAAAC
52090959 GAAAGAGAAATATTCTCTG-AGAAAAC
1 GAAAGAGAAA-ATTCT-TGAAGAAAAC
52090985 GAAAGA
1 GAAAGA
52090991 AGAAGAAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 22 0.76
27 5 0.17
28 2 0.07
ACGTcount: A:0.53, C:0.09, G:0.21, T:0.17
Consensus pattern (25 bp):
GAAAGAGAAAATTCTTGAAGAAAAC
Found at i:52091694 original size:3 final size:3
Alignment explanation
Indices: 52091686--52091712 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
52091676 GAGCAGAGCA
52091686 GAG GAG GAG GAG GAG GAG GAG GAG GAG
1 GAG GAG GAG GAG GAG GAG GAG GAG GAG
52091713 ACGGTTTCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (3 bp):
GAG
Found at i:52094347 original size:13 final size:13
Alignment explanation
Indices: 52094331--52094364 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
52094321 CTGTAATTAG
52094331 TTTAAATTTTAAT
1 TTTAAATTTTAAT
*
52094344 TTT-AATTTTATT
1 TTTAAATTTTAAT
52094356 TTTAAATTT
1 TTTAAATTT
52094365 AGAATTATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (13 bp):
TTTAAATTTTAAT
Found at i:52097011 original size:24 final size:24
Alignment explanation
Indices: 52096992--52097044 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 24
52096982 CTTAATATTT
52096992 AAGTAAATATATAATATAATAATA
1 AAGTAAATATATAATATAATAATA
*
52097016 AAGTAAATATAATAAAATAAATAAGTA
1 AAGTAAATAT-ATAATAT-AATAA-TA
52097043 AA
1 AA
52097045 TGAAATAAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 10 0.40
25 6 0.24
26 5 0.20
27 4 0.16
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (24 bp):
AAGTAAATATATAATATAATAATA
Found at i:52097028 original size:22 final size:22
Alignment explanation
Indices: 52096991--52097053 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 22
52096981 ACTTAATATT
*
52096991 TAAGTAAATAT-ATAATATAATAA
1 TAAGTAAATATAATAAAAT-A-AA
52097014 TAAAGTAAATATAATAAAATAAA
1 T-AAGTAAATATAATAAAATAAA
52097037 TAAGTAAATGA-AATAAA
1 TAAGTAAAT-ATAATAAA
52097054 GAAAGAAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
22 14 0.39
23 5 0.14
24 11 0.31
25 6 0.17
ACGTcount: A:0.65, C:0.00, G:0.06, T:0.29
Consensus pattern (22 bp):
TAAGTAAATATAATAAAATAAA
Found at i:52097057 original size:8 final size:8
Alignment explanation
Indices: 52097030--52097102 Score: 55
Period size: 8 Copynumber: 9.4 Consensus size: 8
52097020 AAATATAATA
*
52097030 AAATAAAT
1 AAATAAAG
*
52097038 AAGTAAATG
1 AAATAAA-G
52097047 AAATAAAG
1 AAATAAAG
*
52097055 AAAGAAAG
1 AAATAAAG
52097063 AAAATAAA-
1 -AAATAAAG
52097071 AAA-AAAG
1 AAATAAAG
*
52097078 AAAGAAAG
1 AAATAAAG
52097086 -AA-AAAG
1 AAATAAAG
*
52097092 AAAGAAAG
1 AAATAAAG
52097100 AAA
1 AAA
52097103 AGAAAAAGGA
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
6 7 0.13
7 10 0.19
8 25 0.46
9 12 0.22
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (8 bp):
AAATAAAG
Found at i:52097058 original size:4 final size:4
Alignment explanation
Indices: 52097046--52097107 Score: 60
Period size: 4 Copynumber: 16.0 Consensus size: 4
52097036 ATAAGTAAAT
* *
52097046 GAAA TAAA GAAA GAAA GAAA -ATAA -AAA AAAA GAAA GAAA G-AA -AAA
1 GAAA GAAA GAAA GAAA GAAA GA-AA GAAA GAAA GAAA GAAA GAAA GAAA
52097091 GAAA GAAA GAAAA GAAA
1 GAAA GAAA G-AAA GAAA
52097108 AAGGAAGGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
3 7 0.14
4 39 0.78
5 4 0.08
ACGTcount: A:0.79, C:0.00, G:0.18, T:0.03
Consensus pattern (4 bp):
GAAA
Found at i:52097077 original size:23 final size:22
Alignment explanation
Indices: 52097051--52097107 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
52097041 TAAATGAAAT
52097051 AAAGAAAGAAAGAAAATAAAAAA
1 AAAGAAAGAAAGAAAA-AAAAAA
* *
52097074 AAAGAAAGAAAGAAAAAGAAAG
1 AAAGAAAGAAAGAAAAAAAAAA
52097096 AAAGAAAAGAAA
1 AAAG-AAAGAAA
52097108 AAGGAAGGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
22 8 0.26
23 23 0.74
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.02
Consensus pattern (22 bp):
AAAGAAAGAAAGAAAAAAAAAA
Found at i:52097091 original size:14 final size:14
Alignment explanation
Indices: 52097051--52097107 Score: 73
Period size: 14 Copynumber: 4.2 Consensus size: 14
52097041 TAAATGAAAT
*
52097051 AAAGAAAGAAAGA-
1 AAAGAAAGAAAAAG
* *
52097064 AAATAAAAAAAAAG
1 AAAGAAAGAAAAAG
52097078 AAAGAAAGAAAAAG
1 AAAGAAAGAAAAAG
52097092 AAAGAAAG-AAAAG
1 AAAGAAAGAAAAAG
52097105 AAA
1 AAA
52097108 AAGGAAGGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
13 18 0.47
14 20 0.53
ACGTcount: A:0.81, C:0.00, G:0.18, T:0.02
Consensus pattern (14 bp):
AAAGAAAGAAAAAG
Found at i:52097110 original size:19 final size:19
Alignment explanation
Indices: 52097051--52097110 Score: 95
Period size: 19 Copynumber: 3.2 Consensus size: 19
52097041 TAAATGAAAT
*
52097051 AAAGAAAGAAAGAAAATAA
1 AAAGAAAGAAAGAAAAGAA
*
52097070 AAAAAAAGAAAG-AAAGAA
1 AAAGAAAGAAAGAAAAGAA
52097088 AAAGAAAGAAAGAAAAGAA
1 AAAGAAAGAAAGAAAAGAA
52097107 AAAG
1 AAAG
52097111 GAAGGAGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
18 16 0.43
19 21 0.57
ACGTcount: A:0.80, C:0.00, G:0.18, T:0.02
Consensus pattern (19 bp):
AAAGAAAGAAAGAAAAGAA
Found at i:52097810 original size:24 final size:24
Alignment explanation
Indices: 52097783--52097829 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
52097773 ATTGAAATGG
52097783 ATTG-ATTTAGTATGTGA-TGAATTT
1 ATTGAATTTA-TAT-TGATTGAATTT
52097807 ATTGAATTTATATTGATTGAATT
1 ATTGAATTTATATTGATTGAATT
52097830 GGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 3 0.14
24 13 0.62
25 5 0.24
ACGTcount: A:0.32, C:0.00, G:0.17, T:0.51
Consensus pattern (24 bp):
ATTGAATTTATATTGATTGAATTT
Found at i:52098031 original size:41 final size:38
Alignment explanation
Indices: 52097985--52098117 Score: 110
Period size: 37 Copynumber: 3.4 Consensus size: 38
52097975 CGACTTCGAG
52097985 TCGATGAGACACTGTGTGTCAATTTACTACTTCGAATTAAT
1 TCGATGAGACACTG-GTGTCAATTTA-TACTTCGAATT-AT
* * * * *
52098026 TCGATGAGGCATTGGGTGCCAA-TT-TACTTCG-GTTGAG
1 TCGATGAGACACT-GGTGTCAATTTATACTTCGAATT-AT
*
52098063 TCGATGAGACACTAGGTGTCAATTTATTACTTTGAATTAT
1 TCGATGAGACACT-GGTGTCAATTTA-TACTTCGAATTAT
* *
52098103 CCGATGAGGCACTGG
1 TCGATGAGACACTGG
52098118 ATGCCAAACT
Statistics
Matches: 72, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
37 21 0.29
38 9 0.12
39 2 0.03
40 20 0.28
41 19 0.26
42 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.24, T:0.34
Consensus pattern (38 bp):
TCGATGAGACACTGGTGTCAATTTATACTTCGAATTAT
Found at i:52098086 original size:37 final size:37
Alignment explanation
Indices: 52097968--52098088 Score: 102
Period size: 37 Copynumber: 3.1 Consensus size: 37
52097958 GAGTTCAGAG
*
52097968 ATTT-CTTCGACTTCGAGTCGATGAGACACTGTGTGTCA
1 ATTTACTTCGAATT-GAGTCGATGAGACACTG-GTGTCA
* * * * *
52098006 ATTTACTACTTCGAATTAATTCGATGAGGCATTGGGTGCCA
1 A-TT--TACTTCGAATTGAGTCGATGAGACACT-GGTGTCA
*
52098047 ATTTACTTCG-GTTGAGTCGATGAGACACTAGGTGTCA
1 ATTTACTTCGAATTGAGTCGATGAGACACT-GGTGTCA
52098084 ATTTA
1 ATTTA
52098089 TTACTTTGAA
Statistics
Matches: 65, Mismatches: 13, Indels: 11
0.73 0.15 0.12
Matches are distributed among these distances:
37 25 0.38
38 8 0.12
39 2 0.03
40 2 0.03
41 19 0.29
42 9 0.14
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.35
Consensus pattern (37 bp):
ATTTACTTCGAATTGAGTCGATGAGACACTGGTGTCA
Found at i:52100959 original size:18 final size:18
Alignment explanation
Indices: 52100933--52100987 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
52100923 TAGTTTATGG
52100933 TAATTCTTTCAATGAATC
1 TAATTCTTTCAATGAATC
*
52100951 TATTTCTTTCAATGAATC
1 TAATTCTTTCAATGAATC
52100969 TAATTCTTTCAATGAATC
1 TAATTCTTTCAATGAATC
52100987 T
1 T
52100988 TTATCAAACC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.31, C:0.16, G:0.05, T:0.47
Consensus pattern (18 bp):
TAATTCTTTCAATGAATC
Found at i:52103176 original size:5 final size:5
Alignment explanation
Indices: 52103161--52103194 Score: 59
Period size: 5 Copynumber: 6.6 Consensus size: 5
52103151 GCAACCTACA
52103161 TTTATT TTTAT TTTAT TTTAT TTTAT TTTAT TTT
1 TTTA-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
52103195 GAATTCTAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 24 0.86
6 4 0.14
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTAT
Found at i:52108534 original size:18 final size:18
Alignment explanation
Indices: 52108513--52108547 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
52108503 ATGTATATAT
* *
52108513 GTATATATAAATTATAAA
1 GTATATAAAAAATATAAA
52108531 GTATATAAAAAATATAA
1 GTATATAAAAAATATAA
52108548 GTACGTACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (18 bp):
GTATATAAAAAATATAAA
Found at i:52108640 original size:21 final size:20
Alignment explanation
Indices: 52108616--52108680 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
52108606 TAAAAACGGT
52108616 ATAAATGGGTAAATAATAATA
1 ATAAAT-GGTAAATAATAATA
**
52108637 AT-AA-GGTAGGTAATAATA
1 ATAAATGGTAAATAATAATA
**
52108655 ATAAATGCAATAATAATAATA
1 ATAAATGGTA-AATAATAATA
52108676 ATAAA
1 ATAAA
52108681 ACTAATTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 14 0.40
19 2 0.06
20 4 0.11
21 15 0.43
ACGTcount: A:0.58, C:0.02, G:0.12, T:0.28
Consensus pattern (20 bp):
ATAAATGGTAAATAATAATA
Found at i:52108644 original size:18 final size:18
Alignment explanation
Indices: 52108623--52108676 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
52108613 GGTATAAATG
52108623 GGTAAATAATAATAATAA
1 GGTAAATAATAATAATAA
**
52108641 GGTAGGTAATAATAATAA
1 GGTAAATAATAATAATAA
* *
52108659 -ATGCAATAATAATAATAA
1 GGT-AAATAATAATAATAA
52108677 TAAAACTAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
17 1 0.03
18 28 0.97
ACGTcount: A:0.57, C:0.02, G:0.13, T:0.28
Consensus pattern (18 bp):
GGTAAATAATAATAATAA
Found at i:52113097 original size:18 final size:18
Alignment explanation
Indices: 52113076--52113110 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
52113066 ATGTATATAT
* *
52113076 GTATATATAAATTATAAA
1 GTATATAAAAAATATAAA
52113094 GTATATAAAAAATATAA
1 GTATATAAAAAATATAA
52113111 GTACGTACAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (18 bp):
GTATATAAAAAATATAAA
Found at i:52113203 original size:21 final size:20
Alignment explanation
Indices: 52113179--52113243 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 20
52113169 TAAAAACGGT
52113179 ATAAATGGGTAAATAATAATA
1 ATAAAT-GGTAAATAATAATA
**
52113200 AT-AA-GGTAGGTAATAATA
1 ATAAATGGTAAATAATAATA
**
52113218 ATAAATGCAATAATAATAATA
1 ATAAATGGTA-AATAATAATA
52113239 ATAAA
1 ATAAA
52113244 ACTAATTAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 14 0.40
19 2 0.06
20 4 0.11
21 15 0.43
ACGTcount: A:0.58, C:0.02, G:0.12, T:0.28
Consensus pattern (20 bp):
ATAAATGGTAAATAATAATA
Found at i:52113207 original size:18 final size:18
Alignment explanation
Indices: 52113186--52113239 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 18
52113176 GGTATAAATG
52113186 GGTAAATAATAATAATAA
1 GGTAAATAATAATAATAA
**
52113204 GGTAGGTAATAATAATAA
1 GGTAAATAATAATAATAA
* *
52113222 -ATGCAATAATAATAATAA
1 GGT-AAATAATAATAATAA
52113240 TAAAACTAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
17 1 0.03
18 28 0.97
ACGTcount: A:0.57, C:0.02, G:0.13, T:0.28
Consensus pattern (18 bp):
GGTAAATAATAATAATAA
Found at i:52114027 original size:10 final size:11
Alignment explanation
Indices: 52114004--52114036 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
52113994 AAATAAGAAG
52114004 ATAAAATGAAA
1 ATAAAATGAAA
52114015 ATAAAAT-AAA
1 ATAAAATGAAA
52114025 ATAAAATCGAAA
1 ATAAAAT-GAAA
52114037 TCTAAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 7 0.35
12 3 0.15
ACGTcount: A:0.73, C:0.03, G:0.06, T:0.18
Consensus pattern (11 bp):
ATAAAATGAAA
Found at i:52114514 original size:5 final size:5
Alignment explanation
Indices: 52114504--52114529 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
52114494 TGAGCATTCG
52114504 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
52114530 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:52115570 original size:9 final size:9
Alignment explanation
Indices: 52115556--52115592 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
52115546 TATAGTTTGA
52115556 TATTCGAAT
1 TATTCGAAT
52115565 TATTCGAAT
1 TATTCGAAT
*
52115574 TATTCGAGT
1 TATTCGAAT
52115583 TATTCGAAT
1 TATTCGAAT
52115592 T
1 T
52115593 CGAAAAATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:52121475 original size:75 final size:75
Alignment explanation
Indices: 52121352--52121502 Score: 293
Period size: 75 Copynumber: 2.0 Consensus size: 75
52121342 CGCCTCAAGC
*
52121352 AACAATTCTAACTTTCTAAACTATTGATGTTTTTAGCAAACCTAAAATGATCTTAAAATTTTAAG
1 AACAATTCTAACTTTCTAAACTATTGATGTTTTTAACAAACCTAAAATGATCTTAAAATTTTAAG
52121417 ACATAATTTG
66 ACATAATTTG
52121427 AACAATTCTAACTTTCTAAACTATTGATGTTTTTAACAAACCTAAAATGATCTTAAAATTTTAAG
1 AACAATTCTAACTTTCTAAACTATTGATGTTTTTAACAAACCTAAAATGATCTTAAAATTTTAAG
52121492 ACATAATTTG
66 ACATAATTTG
52121502 A
1 A
52121503 GACCGTGAAA
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.38
Consensus pattern (75 bp):
AACAATTCTAACTTTCTAAACTATTGATGTTTTTAACAAACCTAAAATGATCTTAAAATTTTAAG
ACATAATTTG
Found at i:52126726 original size:15 final size:15
Alignment explanation
Indices: 52126700--52126740 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
52126690 AGAGTCTTGG
52126700 GCTAAGTTGGGTTAAA
1 GCTAA-TTGGGTTAAA
* *
52126716 GCTAATTGGGTTTAG
1 GCTAATTGGGTTAAA
52126731 GCTAATTGGG
1 GCTAATTGGG
52126741 CCGTAATGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 18 0.78
16 5 0.22
ACGTcount: A:0.24, C:0.07, G:0.34, T:0.34
Consensus pattern (15 bp):
GCTAATTGGGTTAAA
Found at i:52134547 original size:20 final size:20
Alignment explanation
Indices: 52134522--52134573 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
52134512 ATATATATTT
52134522 TTAAAATAATATTGATAA-AA
1 TTAAAA-AATATTGATAATAA
*
52134542 TTAAAACATATTGATAATAA
1 TTAAAAAATATTGATAATAA
52134562 TTTAAACAAATA
1 -TTAAA-AAATA
52134574 ATGTATTATT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
19 10 0.37
20 8 0.30
21 5 0.19
22 4 0.15
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (20 bp):
TTAAAAAATATTGATAATAA
Found at i:52134554 original size:19 final size:20
Alignment explanation
Indices: 52134530--52134569 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
52134520 TTTTAAAATA
52134530 ATATTGATAA-AATTAAAAC
1 ATATTGATAATAATTAAAAC
*
52134549 ATATTGATAATAATTTAAAC
1 ATATTGATAATAATTAAAAC
52134569 A
1 A
52134570 AATAATGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.35
Consensus pattern (20 bp):
ATATTGATAATAATTAAAAC
Found at i:52145734 original size:20 final size:20
Alignment explanation
Indices: 52145709--52145746 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
52145699 GTTTTTCTAG
52145709 TTTAAATTATTT-TGTTAAAT
1 TTTAAATT-TTTATGTTAAAT
52145729 TTTAAATTTTTATGTTAA
1 TTTAAATTTTTATGTTAA
52145747 TAAAGGGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTAAATTTTTATGTTAAAT
Found at i:52154412 original size:20 final size:19
Alignment explanation
Indices: 52154383--52154431 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
52154373 TCCACTAGCC
*
52154383 TTATTGATATTGTAATTAT
1 TTATTTATATTGTAATTAT
* *
52154402 GTTATTTATATTTTATTTAT
1 -TTATTTATATTGTAATTAT
*
52154422 CTATTTATAT
1 TTATTTATAT
52154432 ATATATGTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (19 bp):
TTATTTATATTGTAATTAT
Found at i:52154531 original size:23 final size:22
Alignment explanation
Indices: 52154505--52154619 Score: 63
Period size: 23 Copynumber: 4.9 Consensus size: 22
52154495 TATATTAGCG
*
52154505 TTAAATTTCATTATGTATTATTT
1 TTAAATTT-ATTATGTATTATTC
* *
52154528 TTAAATTACAATATAT-TATTAACATC
1 TTAAATT--TAT-TATGTATT-A-TTC
* *
52154554 ATAAACTT-TTATGTATTATTAGC
1 TTAAATTTATTATGTATTATT--C
* * *
52154577 TTAGATTTATTATATATTTATTT
1 TTAAATTTATTATGTA-TTATTC
52154600 TTAAATTTATTATGTATTAT
1 TTAAATTTATTATGTATTAT
52154620 CATTTCAGAT
Statistics
Matches: 68, Mismatches: 14, Indels: 21
0.66 0.14 0.20
Matches are distributed among these distances:
21 1 0.01
22 8 0.12
23 32 0.47
24 12 0.18
25 9 0.13
26 6 0.09
ACGTcount: A:0.36, C:0.05, G:0.04, T:0.55
Consensus pattern (22 bp):
TTAAATTTATTATGTATTATTC
Found at i:52158613 original size:25 final size:25
Alignment explanation
Indices: 52158585--52158638 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
52158575 ATTGTGATCA
52158585 TTTTTGAACCAA-TATTCTTTCAGTC
1 TTTTTGAA-CAATTATTCTTTCAGTC
* *
52158610 TTTTTGAATAATTATTCTTTCATTC
1 TTTTTGAACAATTATTCTTTCAGTC
52158635 TTTT
1 TTTT
52158639 GAATTTCCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 2 0.08
25 24 0.92
ACGTcount: A:0.22, C:0.15, G:0.06, T:0.57
Consensus pattern (25 bp):
TTTTTGAACAATTATTCTTTCAGTC
Found at i:52159455 original size:27 final size:26
Alignment explanation
Indices: 52159400--52159468 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 26
52159390 GTTCAGATTC
52159400 AATAAAAAAAAGAAATCAAAATCAAAA
1 AATAAAAAAAA-AAATCAAAATCAAAA
52159427 AATAAAAAAAAAAGAT-AAAAT-AATTAA
1 AATAAAAAAAAAA-ATCAAAATCAA--AA
52159454 AATAAAAACAAAAAA
1 AATAAAAA-AAAAAA
52159469 AATGATGAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
25 2 0.05
26 7 0.18
27 24 0.63
28 5 0.13
ACGTcount: A:0.80, C:0.04, G:0.03, T:0.13
Consensus pattern (26 bp):
AATAAAAAAAAAAATCAAAATCAAAA
Found at i:52161780 original size:44 final size:44
Alignment explanation
Indices: 52161715--52161970 Score: 318
Period size: 44 Copynumber: 5.8 Consensus size: 44
52161705 TGACCCCATC
* ** *
52161715 CCTATCTCCCAGGACAATAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGACAGCAGTGGAGTAGGTTGAAGATTGTGAAT
* * *
52161759 CCTATCTCCCTGCACAGTAGTGGAGTAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGACAGCAGTGGAGTAGGTTGAAGATTGTGAAT
*
52161803 CCTATCTCCCTGGACAGCAGTAGAGTAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGACAGCAGTGGAGTAGGTTGAAGATTGTGAAT
* * *
52161847 CCTATCTCCCTGGATAGCAGTGGAGTAGGTTAAAGATTATGAAT
1 CCTATCTCCCTGGACAGCAGTGGAGTAGGTTGAAGATTGTGAAT
* * * * *
52161891 CCTATATCCCGGGACAACAGTGGAATAGGTTGAAGATTGT-AAG
1 CCTATCTCCCTGGACAGCAGTGGAGTAGGTTGAAGATTGTGAAT
* *
52161934 CCTTATCTCCCT-AAGCAGTAGTGGAGTAGGTTGAAGA
1 CC-TATCTCCCTGGA-CAGCAGTGGAGTAGGTTGAAGA
52161971 ATTAGCGATC
Statistics
Matches: 183, Mismatches: 27, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
43 5 0.03
44 178 0.97
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.27
Consensus pattern (44 bp):
CCTATCTCCCTGGACAGCAGTGGAGTAGGTTGAAGATTGTGAAT
Found at i:52162769 original size:13 final size:13
Alignment explanation
Indices: 52162753--52162787 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
52162743 TAAAACCCAA
52162753 ATATAAAAAAAAT
1 ATATAAAAAAAAT
*
52162766 ATATAAAATAAAT
1 ATATAAAAAAAAT
52162779 ATAATAAAA
1 AT-ATAAAA
52162788 GTCCAATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 14 0.70
14 6 0.30
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
ATATAAAAAAAAT
Found at i:52164580 original size:16 final size:16
Alignment explanation
Indices: 52164559--52164589 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
52164549 CCCCAAATTA
*
52164559 TTTTTTTTTCTTTTTG
1 TTTTTTTCTCTTTTTG
52164575 TTTTTTTCTCTTTTT
1 TTTTTTTCTCTTTTT
52164590 TTATGCTTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (16 bp):
TTTTTTTCTCTTTTTG
Found at i:52165613 original size:9 final size:9
Alignment explanation
Indices: 52165599--52165659 Score: 54
Period size: 9 Copynumber: 6.8 Consensus size: 9
52165589 ATTAATATCC
*
52165599 AAATAAGTA
1 AAATAAATA
52165608 AAATAAAATA
1 AAAT-AAATA
52165618 AAATAAA-A
1 AAATAAATA
*
52165626 TAATAAATA
1 AAATAAATA
* *
52165635 AAGTAAAGA
1 AAATAAATA
52165644 AAA-AAATA
1 AAATAAATA
52165652 ATAATAAA
1 A-AATAAA
52165660 AATAAAAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 7
0.75 0.13 0.13
Matches are distributed among these distances:
8 12 0.29
9 18 0.44
10 11 0.27
ACGTcount: A:0.75, C:0.00, G:0.05, T:0.20
Consensus pattern (9 bp):
AAATAAATA
Found at i:52165616 original size:5 final size:5
Alignment explanation
Indices: 52165606--52165666 Score: 50
Period size: 5 Copynumber: 11.0 Consensus size: 5
52165596 TCCAAATAAG
* *
52165606 TAAAA TAAAA TAAAA TAAAA TAATAAA TAAAG TAAAGAA AAAAA TAATAA
1 TAAAA TAAAA TAAAA TAAAA T-A-AAA TAAAA T-AA-AA TAAAA TAA-AA
52165656 TAAAAA TAAAA
1 T-AAAA TAAAA
52165667 ATTGGGTTGC
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
5 27 0.59
6 12 0.26
7 7 0.15
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:52165630 original size:27 final size:24
Alignment explanation
Indices: 52165600--52165667 Score: 66
Period size: 24 Copynumber: 2.7 Consensus size: 24
52165590 TTAATATCCA
52165600 AATAAGTAAAATAAAATAAAATAAAAT
1 AATAA-TAAAATAAAA-AAAA-AAAAT
* *
52165627 AATAAATAAAGT-AAAGAAAAAAAT
1 AAT-AATAAAATAAAAAAAAAAAAT
52165651 AATAATAAAAATAAAAA
1 AATAAT-AAAATAAAAA
52165668 TTGGGTTGCC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
23 3 0.09
24 12 0.35
25 6 0.18
26 3 0.09
27 8 0.24
28 2 0.06
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.19
Consensus pattern (24 bp):
AATAATAAAATAAAAAAAAAAAAT
Found at i:52165635 original size:17 final size:16
Alignment explanation
Indices: 52165607--52165668 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 16
52165597 CCAAATAAGT
*
52165607 AAAATAAAATAAAATA
1 AAAAAAAAATAAAATA
* *
52165623 AAATAATAAATAAAGTA
1 AAA-AAAAAATAAAATA
52165640 AAGAAAAAAATAATAATA
1 AA-AAAAAAATAA-AATA
52165658 AAAATAAAAAT
1 AAAA-AAAAAT
52165669 TGGGTTGCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 6
0.77 0.10 0.12
Matches are distributed among these distances:
16 3 0.08
17 22 0.59
18 12 0.32
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (16 bp):
AAAAAAAAATAAAATA
Found at i:52165662 original size:12 final size:11
Alignment explanation
Indices: 52165607--52165668 Score: 63
Period size: 12 Copynumber: 5.5 Consensus size: 11
52165597 CCAAATAAGT
52165607 AAAATAAAAT-
1 AAAATAAAATA
52165617 AAAATAAAATA
1 AAAATAAAATA
*
52165628 ATAAATAAAGTA
1 A-AAATAAAATA
*
52165640 AAGAAAAAAATA
1 AA-AATAAAATA
*
52165652 ATAATAAAAATA
1 AAAAT-AAAATA
52165664 AAAAT
1 AAAAT
52165669 TGGGTTGCCT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
10 10 0.24
11 4 0.10
12 28 0.67
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.19
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:52172277 original size:20 final size:19
Alignment explanation
Indices: 52172248--52172296 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
52172238 TCCACTAGCC
*
52172248 TTATTGATATTGTAATTAT
1 TTATTTATATTGTAATTAT
* *
52172267 GTTATTTATATTTTATTTAT
1 -TTATTTATATTGTAATTAT
*
52172287 CTATTTATAT
1 TTATTTATAT
52172297 ATATATATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 9 0.36
20 16 0.64
ACGTcount: A:0.29, C:0.02, G:0.06, T:0.63
Consensus pattern (19 bp):
TTATTTATATTGTAATTAT
Found at i:52172400 original size:23 final size:22
Alignment explanation
Indices: 52172374--52172488 Score: 72
Period size: 23 Copynumber: 4.9 Consensus size: 22
52172364 TTTATTAACG
*
52172374 TTAAATTTCATTATGTATTATTT
1 TTAAATTT-ATTATGTATTATTC
* *
52172397 TTAAATTACAATATAT-TATTAACATC
1 TTAAATT--TAT-TATGTATT-A-TTC
*
52172423 ATAAATTT-TTATGTATTATTAGC
1 TTAAATTTATTATGTATTATT--C
* * *
52172446 TTAGATTTATTATATATTTATTT
1 TTAAATTTATTATGTA-TTATTC
52172469 TTAAATTTATTATGTATTAT
1 TTAAATTTATTATGTATTAT
52172489 CATTTCATAT
Statistics
Matches: 70, Mismatches: 12, Indels: 21
0.68 0.12 0.20
Matches are distributed among these distances:
21 1 0.01
22 8 0.11
23 33 0.47
24 12 0.17
25 9 0.13
26 7 0.10
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (22 bp):
TTAAATTTATTATGTATTATTC
Found at i:52179150 original size:147 final size:147
Alignment explanation
Indices: 52178924--52179193 Score: 409
Period size: 147 Copynumber: 1.8 Consensus size: 147
52178914 ATTCCTATGG
* * *
52178924 CCTGGGGCGTTTCCTCCACTTCCTACCACATTGCGAACAGGACTGCCCCCTCTGCCAAGCATTCC
1 CCTGGGGCGTTTCCTCCACTTCCTACCACATTGCCAACAGGACTGCCCCCTCTACAAAGCATTCC
* *
52178989 CTCAGTCCCCACAATCCCAACTGTGATTTCCCT-AATTCCTTTCTCTTT-TCCACCATTTCTATA
66 CTCAGTCCCCACAATCCCAACTG-CAGTTCCCTCAATTCCTTTCT-TTTCTCCACCATTTCTATA
52179052 TTTCCCTAATTTCCCAAAC
129 TTTCCCTAATTTCCCAAAC
* * *
52179071 CCTGGGGTGTTTCCTCCACTTCCTACCACATTGCCAAGAGGACTTCCCCCTCTACAAAGCATTCC
1 CCTGGGGCGTTTCCTCCACTTCCTACCACATTGCCAACAGGACTGCCCCCTCTACAAAGCATTCC
* * *
52179136 TTCAGTCCCTACAATCCCAACTGCAGTTCCCTCTATTCCTTTCTTTTCTCCACCATTT
66 CTCAGTCCCCACAATCCCAACTGCAGTTCCCTCAATTCCTTTCTTTTCTCCACCATTT
52179194 TCTCATTCTA
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
146 10 0.09
147 100 0.91
ACGTcount: A:0.19, C:0.39, G:0.10, T:0.32
Consensus pattern (147 bp):
CCTGGGGCGTTTCCTCCACTTCCTACCACATTGCCAACAGGACTGCCCCCTCTACAAAGCATTCC
CTCAGTCCCCACAATCCCAACTGCAGTTCCCTCAATTCCTTTCTTTTCTCCACCATTTCTATATT
TCCCTAATTTCCCAAAC
Found at i:52183580 original size:16 final size:17
Alignment explanation
Indices: 52183559--52183591 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
52183549 AGTTGCTATA
52183559 CTTG-AATGATTTTGGT
1 CTTGAAATGATTTTGGT
52183575 CTTGAAATGATTTTGGT
1 CTTGAAATGATTTTGGT
52183592 TCATGTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (17 bp):
CTTGAAATGATTTTGGT
Found at i:52184261 original size:21 final size:21
Alignment explanation
Indices: 52184235--52184275 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
52184225 CACATACATA
* *
52184235 GGCGTGTGAATTAGCCACACG
1 GGCGTGTGAAATAGACACACG
52184256 GGCGTGTGAAATAGACACAC
1 GGCGTGTGAAATAGACACAC
52184276 AACGCTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.32, T:0.17
Consensus pattern (21 bp):
GGCGTGTGAAATAGACACACG
Found at i:52193919 original size:6 final size:6
Alignment explanation
Indices: 52193903--52193940 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
52193893 AGTCCATTTG
* *
52193903 TTTTA- TTTTAT TTTTAT TTTTAT GTTTAT TGTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
52193941 CTTAGACTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
5 5 0.18
6 23 0.82
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:52193932 original size:18 final size:17
Alignment explanation
Indices: 52193903--52193940 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
52193893 AGTCCATTTG
*
52193903 TTTTATTTTATTTTTAT
1 TTTTATTTTATTGTTAT
52193920 TTTTATGTTTATTGTTAT
1 TTTTAT-TTTATTGTTAT
52193938 TTT
1 TTT
52193941 CTTAGACTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.16, C:0.00, G:0.05, T:0.79
Consensus pattern (17 bp):
TTTTATTTTATTGTTAT
Found at i:52201539 original size:14 final size:14
Alignment explanation
Indices: 52201516--52201546 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
52201506 TGTTGTGTTC
*
52201516 TTAGTTAATTTAGA
1 TTAGTAAATTTAGA
52201530 TTAGTAAATTTAGA
1 TTAGTAAATTTAGA
52201544 TTA
1 TTA
52201547 AAAGCAATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.48
Consensus pattern (14 bp):
TTAGTAAATTTAGA
Found at i:52202392 original size:12 final size:12
Alignment explanation
Indices: 52202368--52202422 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
52202358 ATTATTACCT
52202368 AAAAAA-TT-AA
1 AAAAAATTTGAA
52202378 AAAATAATTTGAA
1 AAAA-AATTTGAA
*
52202391 AAAAAATATT-TA
1 AAAAAAT-TTGAA
*
52202403 AAAAAATTGGAA
1 AAAAAATTTGAA
52202415 AAAAAATT
1 AAAAAATT
52202423 GGTCCACATG
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
10 4 0.11
11 3 0.08
12 22 0.59
13 8 0.22
ACGTcount: A:0.69, C:0.00, G:0.05, T:0.25
Consensus pattern (12 bp):
AAAAAATTTGAA
Found at i:52203718 original size:194 final size:196
Alignment explanation
Indices: 52203330--52203723 Score: 641
Period size: 194 Copynumber: 2.0 Consensus size: 196
52203320 ATGAAATCTC
* * *
52203330 TGAATTATTGTTTGTGTGTTTAAGTAATTTTCTCACACCTATCATTGAAGTTTTTTTTTTAATTT
1 TGAATTATTGTTTGCGTGTTTAAGTAATTTTCTCACACCTATCATTAAAGTTATTTTTTTAATTT
* * * *
52203395 AGAGTTTTAAGTGATTCTGTTTTGTGAATAATTTGTGGATGTTTGTGCATTGTGTAATTAATATT
66 AGAGTTTTAAGTGATTCTATTTTGGGAATAATTTATGGATATTTGTGCATTGTGTAATTAATATT
* *
52203460 TTTAAGACACGAGAGAGTCAAGCATGATAAGTTGTTTTTCAGAAATTATTATTTTAGGTGTCTCC
131 TTTAAGACACGAGAGAGTCAAGCATGATAAGTTGTTTTTCAAAAATTATTATTCTAGGTGTCTCC
52203525 A
196 A
*
52203526 TGAATTATTG-TT-CGTGTTTAAGTGATTTTCTCACACCTATCATTAAAGTTATTTTTTTAATTT
1 TGAATTATTGTTTGCGTGTTTAAGTAATTTTCTCACACCTATCATTAAAGTTATTTTTTTAATTT
* *
52203589 AGAGTTTTTAGTGATTCTATTTTGGGAATAATTTATGGATATTTGTGCATTGTGTGATTAATA-T
66 AGAGTTTTAAGTGATTCTATTTTGGGAATAATTTATGGATATTTGTGCATTGTGTAATTAATATT
52203653 TTTAAGACACGAGAGAGTCAAGCATGATAAGTTGTTTTTCAAAAATTATTATTCTAGGTTGTCTC
131 TTTAAGACACGAGAGAGTCAAGCATGATAAGTTGTTTTTCAAAAATTATTATTCTAGG-TGTCTC
*
52203718 CC
195 CA
52203720 TGAA
1 TGAA
52203724 CTAAAGAATT
Statistics
Matches: 184, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
193 57 0.31
194 115 0.62
195 2 0.01
196 10 0.05
ACGTcount: A:0.27, C:0.09, G:0.18, T:0.46
Consensus pattern (196 bp):
TGAATTATTGTTTGCGTGTTTAAGTAATTTTCTCACACCTATCATTAAAGTTATTTTTTTAATTT
AGAGTTTTAAGTGATTCTATTTTGGGAATAATTTATGGATATTTGTGCATTGTGTAATTAATATT
TTTAAGACACGAGAGAGTCAAGCATGATAAGTTGTTTTTCAAAAATTATTATTCTAGGTGTCTCC
A
Found at i:52208618 original size:20 final size:21
Alignment explanation
Indices: 52208595--52208637 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
52208585 CTTCTACTCC
52208595 TTGAAATA-CCCTTTGGTTTA
1 TTGAAATACCCCTTTGGTTTA
52208615 TTGAAATACCCCCTTTGGTTTA
1 TTGAAATA-CCCCTTTGGTTTA
52208637 T
1 T
52208638 CTGCTGCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 8 0.38
22 13 0.62
ACGTcount: A:0.23, C:0.19, G:0.14, T:0.44
Consensus pattern (21 bp):
TTGAAATACCCCTTTGGTTTA
Found at i:52216412 original size:14 final size:14
Alignment explanation
Indices: 52216393--52216426 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
52216383 GGGGTTTATT
52216393 GGTTTAGGG-TTAA
1 GGTTTAGGGTTTAA
52216406 GGGTTTAGGGTTTAA
1 -GGTTTAGGGTTTAA
52216421 GGTTTA
1 GGTTTA
52216427 AGATTTATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.41
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:52216427 original size:22 final size:22
Alignment explanation
Indices: 52216347--52216446 Score: 60
Period size: 22 Copynumber: 4.5 Consensus size: 22
52216337 GTGGCTTAGA
* *
52216347 GTTTTGGGTTTAAGGGTTTATAG
1 GTTTAGGG-TTAAGGGTTTATGG
** * *
52216370 GTTAGGGGTTCATGGGGTTTATTG
1 GTTTAGGGTT-A-AGGGTTTATGG
52216394 GTTTAGGGTTAAGGGTTTA-GG
1 GTTTAGGGTTAAGGGTTTATGG
* * *
52216415 GTTTAAGGTTTAA-GATTTATGA
1 GTTT-AGGGTTAAGGGTTTATGG
*
52216437 TTTTAGGGTT
1 GTTTAGGGTT
52216447 TATAATTTAT
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
21 15 0.25
22 20 0.33
23 8 0.13
24 17 0.28
ACGTcount: A:0.19, C:0.01, G:0.35, T:0.45
Consensus pattern (22 bp):
GTTTAGGGTTAAGGGTTTATGG
Found at i:52216441 original size:29 final size:29
Alignment explanation
Indices: 52216409--52216475 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
52216399 GGGTTAAGGG
*
52216409 TTTAGGGTTTA-AGGTTTAAGATTTATGAT
1 TTTAGGGTTTATA-ATTTAAGATTTATGAT
*
52216438 TTTAGGGTTTATAATTTATGATTTATGAT
1 TTTAGGGTTTATAATTTAAGATTTATGAT
*
52216467 TTTAAGGTT
1 TTTAGGGTT
52216476 AATTTAGGGT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 33 0.97
30 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.21, T:0.52
Consensus pattern (29 bp):
TTTAGGGTTTATAATTTAAGATTTATGAT
Found at i:52216447 original size:22 final size:22
Alignment explanation
Indices: 52216416--52216461 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
52216406 GGGTTTAGGG
52216416 TTTAAGGTTTA-AGATTTATGAT
1 TTTAAGGTTTATA-ATTTATGAT
*
52216438 TTTAGGGTTTATAATTTATGAT
1 TTTAAGGTTTATAATTTATGAT
52216460 TT
1 TT
52216462 ATGATTTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 21 0.95
23 1 0.05
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.54
Consensus pattern (22 bp):
TTTAAGGTTTATAATTTATGAT
Found at i:52216720 original size:23 final size:21
Alignment explanation
Indices: 52216694--52216735 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
52216684 ATTTAAGGGT
52216694 TATGCTAAAAACATAGAAAAATA
1 TATG-TAAAAA-ATAGAAAAATA
*
52216717 TATGTTAAAAATAGAAAAA
1 TATGTAAAAAATAGAAAAA
52216736 AATAAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (21 bp):
TATGTAAAAAATAGAAAAATA
Found at i:52216799 original size:134 final size:134
Alignment explanation
Indices: 52216637--52216903 Score: 516
Period size: 134 Copynumber: 2.0 Consensus size: 134
52216627 GTTTAGAGTT
*
52216637 TAAGGGTTAGGGGCTTATGATTTAGGGTTTAAATTTTATTTTTTCACATTTAAGGGTTATGCTAA
1 TAAGGGTTAGGGGCTTATGATTTAGGGTTTAAATTTTATTTTTCCACATTTAAGGGTTATGCTAA
52216702 AAACATAGAAAAATATATGTTAAAAATAGAAAAAAATAAAATAGTATTATTTAAAATAATTTGAA
66 AAACATAGAAAAATATATGTTAAAAATAGAAAAAAATAAAATAGTATTATTTAAAATAATTTGAA
52216767 AATC
131 AATC
*
52216771 TAAGGGTTAGGGGCTTATGGTTTAGGGTTTAAATTTTATTTTTCCACATTTAAGGGTTATGCTAA
1 TAAGGGTTAGGGGCTTATGATTTAGGGTTTAAATTTTATTTTTCCACATTTAAGGGTTATGCTAA
52216836 AAACATAGAAAAATATATGTTAAAAATAGAAAAAAATAAAATAGTATTATTTAAAATAATTTGAA
66 AAACATAGAAAAATATATGTTAAAAATAGAAAAAAATAAAATAGTATTATTTAAAATAATTTGAA
52216901 AAT
131 AAT
52216904 AATTTTAAGT
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
134 131 1.00
ACGTcount: A:0.44, C:0.04, G:0.15, T:0.36
Consensus pattern (134 bp):
TAAGGGTTAGGGGCTTATGATTTAGGGTTTAAATTTTATTTTTCCACATTTAAGGGTTATGCTAA
AAACATAGAAAAATATATGTTAAAAATAGAAAAAAATAAAATAGTATTATTTAAAATAATTTGAA
AATC
Found at i:52216854 original size:23 final size:21
Alignment explanation
Indices: 52216828--52216869 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 21
52216818 ATTTAAGGGT
52216828 TATGCTAAAAACATAGAAAAATA
1 TATG-TAAAAA-ATAGAAAAATA
*
52216851 TATGTTAAAAATAGAAAAA
1 TATGTAAAAAATAGAAAAA
52216870 AATAAAATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 5 0.28
23 4 0.22
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.24
Consensus pattern (21 bp):
TATGTAAAAAATAGAAAAATA
Found at i:52217226 original size:112 final size:113
Alignment explanation
Indices: 52217077--52217388 Score: 335
Period size: 112 Copynumber: 2.7 Consensus size: 113
52217067 TGTTTCTACA
* * * *
52217077 AAAAATGCCGCAATTATGTTTTTTGTCTTTT-TCAAACGTTGTCATTTTTATCTAGGTTTTCAGT
1 AAAAACGCCGCAATTATGTTATTAGTCTTTTGT-AAACGTTGTCATTTTTATCTAGATTTT-AGT
* * * *
52217141 GGCGTTTTTGCCAAAACGCCGCAAAA-TGATGTGTTAGTGGCATTTTCA-
64 GGCGTTTTTACAAAAACACCGCAAAAGTGATGTGGTAGTGGCATTTTCAT
*** * *
52217189 GGTAACGCCGCAATTATGTTATTAGTCTTTTGTAAACGTTGTCGTTTTTATCTACATTATTAGTG
1 AAAAACGCCGCAATTATGTTATTAGTCTTTTGTAAACGTTGTCATTTTTATCTAGATT-TTAGTG
* * * *
52217254 GCATTTTTACAAAAACACCGCAAAAGGTTATGTGGTAGTGGCGTTTTTAT
65 GCGTTTTTACAAAAACACCGCAAAA-GTGATGTGGTAGTGGCATTTTCAT
* * * *
52217304 AAAAATGCCGCAATTATGTTATAAGT-GTTCGCTAAACGTTGTCATTTTTATCTACGATTTTAGT
1 AAAAACGCCGCAATTATGTTATTAGTCTTTTG-TAAACGTTGTCATTTTTATCTA-GATTTTAGT
* *
52217368 GGCGTTTGTACTAAAACACCG
64 GGCGTTTTTACAAAAACACCG
52217389 GTAAAGGATA
Statistics
Matches: 164, Mismatches: 29, Indels: 11
0.80 0.14 0.05
Matches are distributed among these distances:
112 72 0.44
113 3 0.02
114 21 0.13
115 65 0.40
116 3 0.02
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.39
Consensus pattern (113 bp):
AAAAACGCCGCAATTATGTTATTAGTCTTTTGTAAACGTTGTCATTTTTATCTAGATTTTAGTGG
CGTTTTTACAAAAACACCGCAAAAGTGATGTGGTAGTGGCATTTTCAT
Done.