Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr13
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55873576
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.32
Warning! 1239791 characters in sequence are not A, C, G, or T
File 19 of 182
Found at i:6801099 original size:18 final size:17
Alignment explanation
Indices: 6801078--6801112 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6801068 TTATTATTTA
*
6801078 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6801096 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6801113 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6801106 original size:28 final size:27
Alignment explanation
Indices: 6801036--6801108 Score: 76
Period size: 27 Copynumber: 2.7 Consensus size: 27
6801026 TTTATTATCA
*
6801036 AAAATAAATAATTTAATCATATTTAAAC
1 AAAATATATAATTTAAT-ATATTTAAAC
* * **
6801064 ATAAT-TATTATTTAATATATTTTAATT
1 AAAATATATAATTTAATATA-TTTAAAC
6801091 AAAATATATAATTTAATA
1 AAAATATATAATTTAATA
6801109 AAATTCTTAA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
26 3 0.08
27 18 0.50
28 15 0.42
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (27 bp):
AAAATATATAATTTAATATATTTAAAC
Found at i:6801246 original size:18 final size:17
Alignment explanation
Indices: 6801225--6801259 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
6801215 TTATTATTAA
*
6801225 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
6801243 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
6801260 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:6801271 original size:147 final size:149
Alignment explanation
Indices: 6800997--6801271 Score: 500
Period size: 147 Copynumber: 1.9 Consensus size: 149
6800987 ATGATTATTG
*
6800997 TTATTGTTATTTAAATTTTAATAAGATTATTTATTATCAAAAATAAATAATTTAATCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
*
6801062 ACATAATTATTATTTAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
6801127 AGAAATTTGTTTTGGTAAA
131 AGAAATTTGTTTTGGTAAA
* *
6801146 TTATT-TTATTTAAATTTTAATAAGATTA-TTAATATCAATAATAAATAATTTACTCATATTTAA
1 TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
6801209 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
66 ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
6801272 ATATTCTTAT
Statistics
Matches: 122, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
147 94 0.77
148 23 0.19
149 5 0.04
ACGTcount: A:0.46, C:0.04, G:0.03, T:0.47
Consensus pattern (149 bp):
TTATTGTTATTTAAATTTTAATAAGATTATTTAATATCAAAAATAAATAATTTAATCATATTTAA
ACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAGC
AGAAATTTGTTTTGGTAAA
Found at i:6801367 original size:18 final size:17
Alignment explanation
Indices: 6801327--6801379 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 17
6801317 AAATATAAAT
6801327 TAAAATA-ATAA-TT-A
1 TAAAATATATAATTTAA
*
6801341 TTAAATATAT--TTTAA
1 TAAAATATATAATTTAA
6801356 TTAAAATATATAATTTAA
1 -TAAAATATATAATTTAA
6801374 TAAAAT
1 TAAAAT
6801380 TCTAATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
14 8 0.26
15 3 0.10
16 9 0.29
17 6 0.19
18 5 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
TAAAATATATAATTTAA
Found at i:6801437 original size:60 final size:59
Alignment explanation
Indices: 6801253--6801439 Score: 157
Period size: 60 Copynumber: 3.1 Consensus size: 59
6801243 ATATAATTTA
*
6801253 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTC-TAATAA-TAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
* * ** * * * ** * * * *
6801314 GTAAAATAT-AAATTAA-AATAATAATTAT-TAAATATATTTTAATTAAAATATATAAT-TT
1 ATAAAAT-TCTAA-TAATAAT-ATTCTTATATGAATTTACTAAAATCATAATATATGATACT
6801372 AATAAAATTCTAATAATCAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
1 -ATAAAATTCTAATAAT-AATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
6801433 ATAAAAT
1 ATAAAAT
6801440 ATAATTTGAA
Statistics
Matches: 91, Mismatches: 26, Indels: 19
0.67 0.19 0.14
Matches are distributed among these distances:
58 5 0.05
59 37 0.41
60 38 0.42
61 10 0.11
62 1 0.01
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (59 bp):
ATAAAATTCTAATAATAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT
Found at i:6801438 original size:119 final size:120
Alignment explanation
Indices: 6801205--6801499 Score: 495
Period size: 119 Copynumber: 2.5 Consensus size: 120
6801195 TTACTCATAT
*
6801205 TTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
1 TTAAA-ATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAAT
* * *
6801270 TAATATTCTTATATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAAA
65 CAATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
6801326 TTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTC-TAATAATC
1 TTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATC
*
6801390 AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAT
66 AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
* *
6801445 TTGAAATAATTAA-TATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 TTAAAATAA-TAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATT
6801500 TAAAATAATT
Statistics
Matches: 166, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
119 108 0.65
120 53 0.32
121 5 0.03
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (120 bp):
TTAAAATAATAATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATC
AATATTCTTATATGAATTTACTAAAATCATAATATATGATACTATAAAATATAAA
Found at i:6804762 original size:72 final size:72
Alignment explanation
Indices: 6804683--6804839 Score: 190
Period size: 72 Copynumber: 2.2 Consensus size: 72
6804673 TTTGATTAAA
* *
6804683 GGATAAGTCCAACAAATCCAAATTGGTTAAGTT-GCCTAATGTAGAAGGGACAGGACCAATAATT
1 GGATAAGTCCAACAAATCCAAATTGGTTAAGTTGGCC-AAGGTAGAAGGGACAGGACCAAGAATT
*
6804747 TGGTTTTT
65 TGGTTATT
* ** ** * * *
6804755 GGATAAGTTCAACATTTTTAAATTGGTTAAGTTGGCCAAGGTAGGAGGGATAGGACCACGAATTT
1 GGATAAGTCCAACAAATCCAAATTGGTTAAGTTGGCCAAGGTAGAAGGGACAGGACCAAGAATTT
6804820 GGTTATT
66 GGTTATT
*
6804827 GGATAGGTCCAAC
1 GGATAAGTCCAAC
6804840 TGTTTCAACC
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
72 68 0.96
73 3 0.04
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (72 bp):
GGATAAGTCCAACAAATCCAAATTGGTTAAGTTGGCCAAGGTAGAAGGGACAGGACCAAGAATTT
GGTTATT
Found at i:6806621 original size:7 final size:7
Alignment explanation
Indices: 6806609--6806646 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
6806599 TAGTTTAGCC
6806609 ATTTTTT
1 ATTTTTT
6806616 ATTTTTT
1 ATTTTTT
6806623 A-TTTTT
1 ATTTTTT
6806629 ATTTTTT
1 ATTTTTT
* *
6806636 GTTTTTA
1 ATTTTTT
6806643 ATTT
1 ATTT
6806647 AAATTTGACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.82
Consensus pattern (7 bp):
ATTTTTT
Found at i:6806629 original size:13 final size:13
Alignment explanation
Indices: 6806611--6806642 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
6806601 GTTTAGCCAT
6806611 TTTTTATTTTTTA
1 TTTTTATTTTTTA
*
6806624 TTTTTATTTTTTG
1 TTTTTATTTTTTA
6806637 TTTTTA
1 TTTTTA
6806643 ATTTAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.03, T:0.84
Consensus pattern (13 bp):
TTTTTATTTTTTA
Found at i:6809827 original size:52 final size:51
Alignment explanation
Indices: 6809697--6809828 Score: 153
Period size: 50 Copynumber: 2.6 Consensus size: 51
6809687 ATGTGTTTTG
* * *
6809697 CATTTAATAAAGTGAAT-CATTATGTAACTCTCATGTTAGTTAAGTTGGCAT
1 CATTAAATTAAGT-AATGCATTATGTAACTCTCATATTAGTTAAGTTGGCAT
* * *
6809748 CA-TAAATTATG-ACATGCATTATCTAACTCTCATATTAGTTAAAGTTTGCAT
1 CATTAAATTAAGTA-ATGCATTATGTAACTCTCATATTAGTT-AAGTTGGCAT
*
6809799 CATTAAATTAAGTAATGCATTAAGTAACTC
1 CATTAAATTAAGTAATGCATTATGTAACTC
6809829 ATTTGCTCAT
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
48 1 0.01
49 2 0.03
50 28 0.42
51 13 0.19
52 22 0.33
53 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (51 bp):
CATTAAATTAAGTAATGCATTATGTAACTCTCATATTAGTTAAGTTGGCAT
Found at i:6813961 original size:141 final size:141
Alignment explanation
Indices: 6813707--6813984 Score: 493
Period size: 141 Copynumber: 2.0 Consensus size: 141
6813697 TAGACACATG
* * *
6813707 GGCATGTGACAAGCCATGTGAACAGTGGAGCAATACTTTAAGATAGGCCACACGAGTACAACGAG
1 GGCATGTGACAAGCCATGTGAACAGTGGAGAAATACTTTAAAATAGGCCACACGAGCACAACGAG
*
6813772 TAACATAGTCAACTCACACGGTCGTATGGCCCAACATAGTCCACATACACACCCATGGCTTCCTC
66 TAACATAGTCAACTCACACAGTCGTATGGCCCAACATAGTCCACATACACACCCATGGCTTCCTC
6813837 CTCTCTTTTCT
131 CTCTCTTTTCT
* *
6813848 GGCATGTGACAGGCCATGTGAACAGTGGAGAAATACTTTAAAATAGGCCACACGAGCACAATGAG
1 GGCATGTGACAAGCCATGTGAACAGTGGAGAAATACTTTAAAATAGGCCACACGAGCACAACGAG
6813913 TAACATAGTCAACTCACACAGTCGTATGGCCCAACATAGTCCACATACACACCCATGGCTTCCTC
66 TAACATAGTCAACTCACACAGTCGTATGGCCCAACATAGTCCACATACACACCCATGGCTTCCTC
*
6813978 TTCTCTT
131 CTCTCTT
6813985 CGCTAGCCCG
Statistics
Matches: 130, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
141 130 1.00
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (141 bp):
GGCATGTGACAAGCCATGTGAACAGTGGAGAAATACTTTAAAATAGGCCACACGAGCACAACGAG
TAACATAGTCAACTCACACAGTCGTATGGCCCAACATAGTCCACATACACACCCATGGCTTCCTC
CTCTCTTTTCT
Found at i:6815308 original size:35 final size:35
Alignment explanation
Indices: 6815262--6815335 Score: 130
Period size: 35 Copynumber: 2.1 Consensus size: 35
6815252 GAAAGGAGAG
*
6815262 TATGAGCGTCGTAGGCAATTTAGATTTGTACTTCT
1 TATGAGCGTCGTAGGCAATTTAGATATGTACTTCT
*
6815297 TATGAGCGTCGTGGGCAATTTAGATATGTACTTCT
1 TATGAGCGTCGTAGGCAATTTAGATATGTACTTCT
6815332 TATG
1 TATG
6815336 GAGTATGCAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.23, C:0.14, G:0.24, T:0.39
Consensus pattern (35 bp):
TATGAGCGTCGTAGGCAATTTAGATATGTACTTCT
Found at i:6815837 original size:6 final size:6
Alignment explanation
Indices: 6815826--6815888 Score: 126
Period size: 6 Copynumber: 10.5 Consensus size: 6
6815816 TGTTTTATCT
6815826 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
6815874 ATTTTG ATTTTG ATT
1 ATTTTG ATTTTG ATT
6815889 ATTAGTTGTT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 57 1.00
ACGTcount: A:0.17, C:0.00, G:0.16, T:0.67
Consensus pattern (6 bp):
ATTTTG
Found at i:6815989 original size:93 final size:94
Alignment explanation
Indices: 6815875--6816052 Score: 340
Period size: 93 Copynumber: 1.9 Consensus size: 94
6815865 TTGATTTTGA
6815875 TTTTGATTTTGATTATTAGTTGTTTTTATTTTCTTTTCTAAACTTATATGTTTTTATTTTATTAT
1 TTTTGATTTTGATTATTAGTTGTTTTTATTTTCTTTTCTAAACTTATATGTTTTTATTTTATTAT
6815940 GCATTTTACTTTTATTATTTCAGTTGTAC
66 GCATTTTACTTTTATTATTTCAGTTGTAC
*
6815969 TTTT-ATTTTTATTATTAGTTGTTTTTATTTTCTTTTCTAAACTTATATGTTTTTATTTTATTAT
1 TTTTGATTTTGATTATTAGTTGTTTTTATTTTCTTTTCTAAACTTATATGTTTTTATTTTATTAT
6816033 GCATTTTACTTTTATTATTT
66 GCATTTTACTTTTATTATTT
6816053 TTTCTGTTTT
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
93 79 0.95
94 4 0.05
ACGTcount: A:0.20, C:0.07, G:0.07, T:0.66
Consensus pattern (94 bp):
TTTTGATTTTGATTATTAGTTGTTTTTATTTTCTTTTCTAAACTTATATGTTTTTATTTTATTAT
GCATTTTACTTTTATTATTTCAGTTGTAC
Found at i:6816080 original size:18 final size:17
Alignment explanation
Indices: 6816042--6816085 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
6816032 TGCATTTTAC
*
6816042 TTTTATTATTTTTTCTGT
1 TTTTATT-TTTTTTCTAT
6816060 TTTTATTTTTTTTCTTAT
1 TTTTATTTTTTTTC-TAT
6816078 TTTT-TTTT
1 TTTTATTTT
6816086 ATCTATCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 11 0.46
18 13 0.54
ACGTcount: A:0.09, C:0.05, G:0.02, T:0.84
Consensus pattern (17 bp):
TTTTATTTTTTTTCTAT
Found at i:6820900 original size:63 final size:63
Alignment explanation
Indices: 6820701--6820947 Score: 282
Period size: 63 Copynumber: 3.9 Consensus size: 63
6820691 TTGTGCTAAC
** *
6820701 CCAGTTTATTTTACACAAGTACCACAACATGCACAATCATTCCTAGCATCAACACCTTCAACT
1 CCAGTTTATTTTACACAAACACCACAACATGCACAATCATTCCTTGCATCAACACCTTCAACT
* * ** *
6820764 CCAGTTTATTTTACACAAACACCACAGCA--CACATAACATTCCCCGTATCAACACCTTCAACT
1 CCAGTTTATTTTACACAAACACCACAACATGCACA-ATCATTCCTTGCATCAACACCTTCAACT
* * * * * * *
6820826 CTAGTTTATTTTACAAAAACACCACAACATGCACAATTATTCCTTGCATCAACACATTTAGCA
1 CCAGTTTATTTTACACAAACACCACAACATGCACAATCATTCCTTGCATCAACACCTTCAACT
* * * ** *
6820889 CCAGTTTATTTTACATAAGCACCATAACACCCACAATCATTCCATGCATCAACACCTTC
1 CCAGTTTATTTTACACAAACACCACAACATGCACAATCATTCCTTGCATCAACACCTTC
6820948 TCAATAGGTA
Statistics
Matches: 152, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
61 4 0.03
62 50 0.33
63 94 0.62
64 4 0.03
ACGTcount: A:0.36, C:0.32, G:0.06, T:0.27
Consensus pattern (63 bp):
CCAGTTTATTTTACACAAACACCACAACATGCACAATCATTCCTTGCATCAACACCTTCAACT
Found at i:6828879 original size:20 final size:20
Alignment explanation
Indices: 6828854--6828892 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
6828844 CAATCGGCTT
6828854 TAATTACACCAAA-TATTACC
1 TAATTACA-CAAATTATTACC
6828874 TAATTACACAAATTATTAC
1 TAATTACACAAATTATTAC
6828893 AAATATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.46, C:0.21, G:0.00, T:0.33
Consensus pattern (20 bp):
TAATTACACAAATTATTACC
Found at i:6834518 original size:44 final size:44
Alignment explanation
Indices: 6834431--6834519 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
6834421 CATCAAGTGT
* * * *
6834431 AGAATCAAATTATTACAACATAAATAGAGTAAGAACTGAAACAA
1 AGAATCAAATTATTACAACACAAACAAAGTAAGAACAGAAACAA
* *
6834475 AGAATCAAATTATTACAACACAAACAAATTATGAACA-AGAACAA
1 AGAATCAAATTATTACAACACAAACAAAGTAAGAACAGA-AACAA
6834519 A
1 A
6834520 CCAAACTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 1 0.03
44 37 0.97
ACGTcount: A:0.58, C:0.13, G:0.09, T:0.19
Consensus pattern (44 bp):
AGAATCAAATTATTACAACACAAACAAAGTAAGAACAGAAACAA
Found at i:6839316 original size:23 final size:24
Alignment explanation
Indices: 6839273--6839322 Score: 59
Period size: 23 Copynumber: 2.1 Consensus size: 24
6839263 ACTTGAATTT
*
6839273 TTTTATTTTTGTATATTTTTTA-A
1 TTTTATTTTTGTATATCTTTTAGA
*
6839296 TTTTATTTGTTGTGTA-CTTTTAGA
1 TTTTATTT-TTGTATATCTTTTAGA
6839320 TTT
1 TTT
6839323 AAAAAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 13 0.57
24 10 0.43
ACGTcount: A:0.18, C:0.02, G:0.10, T:0.70
Consensus pattern (24 bp):
TTTTATTTTTGTATATCTTTTAGA
Found at i:6839353 original size:14 final size:14
Alignment explanation
Indices: 6839334--6839381 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 14
6839324 AAAAAAATAT
6839334 TTTTTAAAGTTAAC
1 TTTTTAAAGTTAAC
*
6839348 TTTTTAAAGAGTAAGC
1 TTTTTAAAG-TTAA-C
6839364 -TTTTAAATGTTAAC
1 TTTTTAAA-GTTAAC
6839378 TTTT
1 TTTT
6839382 AACTTAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 7
0.76 0.05 0.19
Matches are distributed among these distances:
14 10 0.36
15 16 0.57
16 2 0.07
ACGTcount: A:0.33, C:0.06, G:0.10, T:0.50
Consensus pattern (14 bp):
TTTTTAAAGTTAAC
Found at i:6839382 original size:14 final size:13
Alignment explanation
Indices: 6839335--6839383 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
6839325 AAAAAATATT
6839335 TTTTAAAGTTAAC
1 TTTTAAAGTTAAC
*
6839348 TTTTTAAAGAGTAAGC
1 -TTTTAAAG-TTAA-C
6839364 TTTTAAATGTTAAC
1 TTTTAAA-GTTAAC
6839378 TTTTAA
1 TTTTAA
6839384 CTTAATTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
14 15 0.50
15 13 0.43
16 2 0.07
ACGTcount: A:0.37, C:0.06, G:0.10, T:0.47
Consensus pattern (13 bp):
TTTTAAAGTTAAC
Found at i:6839445 original size:28 final size:28
Alignment explanation
Indices: 6839413--6839475 Score: 69
Period size: 27 Copynumber: 2.3 Consensus size: 28
6839403 TTTATTTTTT
*
6839413 TATATATTCAAT-TTTTAAAATTTTAAAA
1 TATATATTC-ATCTCTTAAAATTTTAAAA
*
6839441 TATATAAT-ATCTCTTAAAATTTTAAAA
1 TATATATTCATCTCTTAAAATTTTAAAA
*
6839468 AATA-ATTC
1 TATATATTC
6839476 TGATTTTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 4 0.14
27 18 0.62
28 7 0.24
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.46
Consensus pattern (28 bp):
TATATATTCATCTCTTAAAATTTTAAAA
Found at i:6840612 original size:3 final size:3
Alignment explanation
Indices: 6840604--6840684 Score: 92
Period size: 3 Copynumber: 26.7 Consensus size: 3
6840594 NNNNNNNNNN
*
6840604 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCT- TTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
* * **
6840649 TTA TATA TTA TTA TTA TCA ATA TTA TGG TTA TTA TT
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
6840685 GTGATGTTTT
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
2 1 0.02
3 60 0.92
4 4 0.06
ACGTcount: A:0.32, C:0.04, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:6845187 original size:24 final size:23
Alignment explanation
Indices: 6845143--6845225 Score: 71
Period size: 24 Copynumber: 3.6 Consensus size: 23
6845133 AAGAAAAATC
* *
6845143 AAAATCAAAGTCAAAAT--GAAA
1 AAAATAAAAATCAAAATAAGAAA
6845164 AAAATTAAAAATCAAAATAAGAAA
1 AAAA-TAAAAATCAAAATAAGAAA
* ** *
6845188 AAAACAAAAAGAAGAAAGAAGAAA
1 AAAATAAAAATCA-AAATAAGAAA
*
6845212 AAAATCAAAATCAA
1 AAAATAAAAATCAA
6845226 GATCAAAATG
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
21 4 0.08
22 11 0.23
23 7 0.15
24 26 0.54
ACGTcount: A:0.73, C:0.07, G:0.08, T:0.11
Consensus pattern (23 bp):
AAAATAAAAATCAAAATAAGAAA
Found at i:6847605 original size:44 final size:43
Alignment explanation
Indices: 6847424--6847667 Score: 172
Period size: 44 Copynumber: 5.7 Consensus size: 43
6847414 AGAATTTCAG
* * * *
6847424 ATCTTATCTCCATG-AGATTACAGCGGAACAGATTGAAGATAGT
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAAGACAGT
* * * * * *
6847467 AATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGG
1 -ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATT-GAAGACAGT
* * * * * * *
6847512 ATCTCATCTCTCTGAAGTTACAGTAGAGTAGATCGCA-TCAG-
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAGT
* * *
6847553 GTCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAT
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAG-T
* * * ** *
6847597 ATCTTATCTTCTTG-AGATTACAGCGGAGCAGATCCAAGACACT
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAAGACAGT
*
6847640 ATCCTATCTCCCTGAAGTTACAGTGGAG
1 ATCTTATCTCCCTGAAGTTACAGTGGAG
6847668 TGGATTAAAG
Statistics
Matches: 151, Mismatches: 42, Indels: 15
0.73 0.20 0.07
Matches are distributed among these distances:
41 29 0.19
42 5 0.03
43 24 0.16
44 86 0.57
45 7 0.05
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.27
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAGT
Found at i:6847812 original size:98 final size:98
Alignment explanation
Indices: 6847643--6847822 Score: 263
Period size: 98 Copynumber: 1.8 Consensus size: 98
6847633 AGACACTATC
* *
6847643 CTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAGTAAAGGATCTCAACTCTCTGAAATTACAGT
1 CTATCTCCCTAAAGTTACAGTGGAGTGGATTAAAATAAAGGATCTCAACTCTCTGAAATTACAGT
6847708 AGAGTAGATCACATCAGATTGAAGCCGATAATT
66 AGAGTAGATCACATCAGATTGAAGCCGATAATT
* ** * * *
6847741 CTATCTCCCTAAAGTTGCAGTGGAGTGGATTAAAATCGTA-GATCTTATCTCTCTGAAGTTACAG
1 CTATCTCCCTAAAGTTACAGTGGAGTGGATTAAAAT-AAAGGATCTCAACTCTCTGAAATTACAG
*
6847805 TAGAGTAGATCGCATCAG
65 TAGAGTAGATCACATCAG
6847823 GTCTTATCTC
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
98 71 0.99
99 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (98 bp):
CTATCTCCCTAAAGTTACAGTGGAGTGGATTAAAATAAAGGATCTCAACTCTCTGAAATTACAGT
AGAGTAGATCACATCAGATTGAAGCCGATAATT
Found at i:6848891 original size:94 final size:95
Alignment explanation
Indices: 6848708--6848895 Score: 369
Period size: 94 Copynumber: 2.0 Consensus size: 95
6848698 ATTTTTATTT
6848708 TTATTTTGGCTATAAAGCCGATTTGTAAGAAACGAAATAGGGGGGATTTTTCTGGGATTTTTTTC
1 TTATTTTGGCTATAAAGCCGATTTGTAAGAAACGAAATAGGGGGGATTTTTCTGGGATTTTTTTC
6848773 TTCTTCTCTTTCGGCAAAAGCCGAACACTG
66 TTCTTCTCTTTCGGCAAAAGCCGAACACTG
6848803 TTATTTTGGCTATAAAGCCGATTTGTAAGAAACGAAATA-GGGGGATTTTTCTGGGATTTTTTTC
1 TTATTTTGGCTATAAAGCCGATTTGTAAGAAACGAAATAGGGGGGATTTTTCTGGGATTTTTTTC
6848867 TTCTTCTCTTTCGGCAAAAGCCGAACACT
66 TTCTTCTCTTTCGGCAAAAGCCGAACACT
6848896 ATAAAAGGGG
Statistics
Matches: 93, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
94 54 0.58
95 39 0.42
ACGTcount: A:0.26, C:0.16, G:0.21, T:0.37
Consensus pattern (95 bp):
TTATTTTGGCTATAAAGCCGATTTGTAAGAAACGAAATAGGGGGGATTTTTCTGGGATTTTTTTC
TTCTTCTCTTTCGGCAAAAGCCGAACACTG
Found at i:6848933 original size:39 final size:39
Alignment explanation
Indices: 6848890--6848972 Score: 157
Period size: 39 Copynumber: 2.1 Consensus size: 39
6848880 GCAAAAGCCG
6848890 AACACTATAAAAGGGGGTTCTTTTTCTTTTCTTTCTTGT
1 AACACTATAAAAGGGGGTTCTTTTTCTTTTCTTTCTTGT
*
6848929 AACACTATAAAAGGGGGTTCTTTTTTTTTTCTTTCTTGT
1 AACACTATAAAAGGGGGTTCTTTTTCTTTTCTTTCTTGT
6848968 AACAC
1 AACAC
6848973 ATTCACAGAA
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 43 1.00
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (39 bp):
AACACTATAAAAGGGGGTTCTTTTTCTTTTCTTTCTTGT
Found at i:6849462 original size:289 final size:289
Alignment explanation
Indices: 6848987--6849564 Score: 1138
Period size: 289 Copynumber: 2.0 Consensus size: 289
6848977 ACAGAAAAAA
6848987 AAGCAAAAAAAAAAAAAAAATCAAAGGTGATTTCCAAGTTTTGTTTCTGATTTCAATCTTTCCTT
1 AAGCAAAAAAAAAAAAAAAATCAAAGGTGATTTCCAAGTTTTGTTTCTGATTTCAATCTTTCCTT
6849052 TTTATTTTTATCACTGTTTTTACTTTTTATTTTTATTTATTTAACGAAAATATAAAAAGAAAAAA
66 TTTATTTTTATCACTGTTTTTACTTTTTATTTTTATTTATTTAACGAAAATATAAAAAGAAAAAA
*
6849117 AGAAAGAAACTCACCGGGACGGATTTCAAGCGCCAATCTGACGTTTCGTCGGCCGTCGAAAGCAG
131 AGAAAGAAACTCACCGGGACGGATTTCAAGCGCCAATCAGACGTTTCGTCGGCCGTCGAAAGCAG
6849182 TGGCGGTGCGACGAGCGCAACGGCGGCGCTAAAAGGAACCAAGGGCCGGATTTTTTTTTAGAGAA
196 TGGCGGTGCGACGAGCGCAACGGCGGCGCTAAAAGGAACCAAGGGCCGGATTTTTTTTTAGAGAA
6849247 AAAAGAAAGGTCTTTTTGAATTTTTTTTT
261 AAAAGAAAGGTCTTTTTGAATTTTTTTTT
6849276 AAGCAAAAAAAAAAAAAAAATCAAAGGTGATTTCCAAGTTTTGTTTCTGATTTCAATCTTTCCTT
1 AAGCAAAAAAAAAAAAAAAATCAAAGGTGATTTCCAAGTTTTGTTTCTGATTTCAATCTTTCCTT
6849341 TTTATTTTTATCACTGTTTTTACTTTTTATTTTTATTTATTTAACGAAAATATAAAAAGAAAAAA
66 TTTATTTTTATCACTGTTTTTACTTTTTATTTTTATTTATTTAACGAAAATATAAAAAGAAAAAA
*
6849406 AGAAAGAAACTCACCGGGACGGATTTCAAGCGCCAATCAGATGTTTCGTCGGCCGTCGAAAGCAG
131 AGAAAGAAACTCACCGGGACGGATTTCAAGCGCCAATCAGACGTTTCGTCGGCCGTCGAAAGCAG
6849471 TGGCGGTGCGACGAGCGCAACGGCGGCGCTAAAAGGAACCAAGGGCCGGATTTTTTTTTAGAGAA
196 TGGCGGTGCGACGAGCGCAACGGCGGCGCTAAAAGGAACCAAGGGCCGGATTTTTTTTTAGAGAA
6849536 AAAAGAAAGGTCTTTTTGAATTTTTTTTT
261 AAAAGAAAGGTCTTTTTGAATTTTTTTTT
6849565 TAAAACAGTG
Statistics
Matches: 287, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
289 287 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (289 bp):
AAGCAAAAAAAAAAAAAAAATCAAAGGTGATTTCCAAGTTTTGTTTCTGATTTCAATCTTTCCTT
TTTATTTTTATCACTGTTTTTACTTTTTATTTTTATTTATTTAACGAAAATATAAAAAGAAAAAA
AGAAAGAAACTCACCGGGACGGATTTCAAGCGCCAATCAGACGTTTCGTCGGCCGTCGAAAGCAG
TGGCGGTGCGACGAGCGCAACGGCGGCGCTAAAAGGAACCAAGGGCCGGATTTTTTTTTAGAGAA
AAAAGAAAGGTCTTTTTGAATTTTTTTTT
Found at i:6856307 original size:23 final size:23
Alignment explanation
Indices: 6856281--6856346 Score: 62
Period size: 23 Copynumber: 2.9 Consensus size: 23
6856271 GTTTAATTAC
*
6856281 ATGTTCATGAATATATTCGTTTA
1 ATGTTAATGAATATATTCGTTTA
** * * *
6856304 ATGTTTGTGAACATGTTCGATTA
1 ATGTTAATGAATATATTCGTTTA
6856327 A-GTTAAATGAATATATTCGT
1 ATGTT-AATGAATATATTCGT
6856347 GAACAGTAAA
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
22 3 0.09
23 29 0.91
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.44
Consensus pattern (23 bp):
ATGTTAATGAATATATTCGTTTA
Found at i:6860229 original size:24 final size:24
Alignment explanation
Indices: 6860200--6860290 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
6860190 CCATATAAAA
*
6860200 GGAAGCTCATGTGAGCCATGTAAG
1 GGAAGCTCATGCGAGCCATGTAAG
* * * * *
6860224 GGAAGCTTATCCGGGCTATATAACG
1 GGAAGCTCATGCGAGCCATGTAA-G
* * *
6860249 GGAAGCTCATGAGAGTCATGATTA-
1 GGAAGCTCATGCGAGCCATG-TAAG
6860273 GGAAGCTCATGCGAGCCA
1 GGAAGCTCATGCGAGCCA
6860291 ATAACGAGTA
Statistics
Matches: 49, Mismatches: 16, Indels: 4
0.71 0.23 0.06
Matches are distributed among these distances:
24 33 0.67
25 14 0.29
26 2 0.04
ACGTcount: A:0.30, C:0.19, G:0.31, T:0.21
Consensus pattern (24 bp):
GGAAGCTCATGCGAGCCATGTAAG
Found at i:6860423 original size:26 final size:26
Alignment explanation
Indices: 6860367--6860437 Score: 92
Period size: 26 Copynumber: 2.8 Consensus size: 26
6860357 GCGAACCATA
6860367 TCGGGAAGCTCA-AAAGAGCCTTAAT
1 TCGGGAAGCTCACAAAGAGCCTTAAT
* *
6860392 T-AGGAAGCTCACAAAGAGCCTTTAT
1 TCGGGAAGCTCACAAAGAGCCTTAAT
* *
6860417 TCGGGAAACTCACGAAGAGCC
1 TCGGGAAGCTCACAAAGAGCC
6860438 ATATATCTGG
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
24 9 0.23
25 14 0.36
26 16 0.41
ACGTcount: A:0.35, C:0.23, G:0.24, T:0.18
Consensus pattern (26 bp):
TCGGGAAGCTCACAAAGAGCCTTAAT
Found at i:6860539 original size:24 final size:24
Alignment explanation
Indices: 6860498--6860557 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
6860488 ATCACAACCA
* *
6860498 ATCGGGATGCTACGAAGA-GATATT
1 ATCGGGAAGCTACGAAGACCATA-T
6860522 ATCGGGAAGCT-CGCAAGACCATAT
1 ATCGGGAAGCTACG-AAGACCATAT
*
6860546 AACGGGAAGCTA
1 ATCGGGAAGCTA
6860558 GAGAGAGCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
23 2 0.07
24 25 0.83
25 3 0.10
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.18
Consensus pattern (24 bp):
ATCGGGAAGCTACGAAGACCATAT
Found at i:6865473 original size:6 final size:7
Alignment explanation
Indices: 6865452--6865476 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6865442 TATTGCATAA
6865452 TTTATTT
1 TTTATTT
6865459 TTTATTT
1 TTTATTT
6865466 TTTATTT
1 TTTATTT
6865473 TTTA
1 TTTA
6865477 AAAACAACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTATTT
Found at i:6866163 original size:13 final size:13
Alignment explanation
Indices: 6866145--6866174 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
6866135 GTTGTAAGGT
6866145 AAAATAAAAAATA
1 AAAATAAAAAATA
*
6866158 AAAATAAAATATA
1 AAAATAAAAAATA
6866171 AAAA
1 AAAA
6866175 AACAAAATCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (13 bp):
AAAATAAAAAATA
Found at i:6866181 original size:20 final size:18
Alignment explanation
Indices: 6866144--6866182 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
6866134 AGTTGTAAGG
*
6866144 TAAAATAAAAAATAAAAA
1 TAAAATAAAAAAAAAAAA
6866162 TAAAATATAAAAAAACAAAA
1 TAAAATA-AAAAAAA-AAAA
6866182 T
1 T
6866183 CCTATAATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 6 0.33
20 5 0.28
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (18 bp):
TAAAATAAAAAAAAAAAA
Found at i:6866686 original size:24 final size:24
Alignment explanation
Indices: 6866647--6866698 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
6866637 GAATTTCATA
*
6866647 TTTTTCTATTGCTTTTGGACAACT
1 TTTTTCTATTGATTTTGGACAACT
* *
6866671 TTTTTCTGTTGATTTTGGACTACT
1 TTTTTCTATTGATTTTGGACAACT
6866695 TTTT
1 TTTT
6866699 ATTTTTTATT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.13, C:0.13, G:0.13, T:0.60
Consensus pattern (24 bp):
TTTTTCTATTGATTTTGGACAACT
Found at i:6873180 original size:27 final size:28
Alignment explanation
Indices: 6873129--6873182 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
6873119 CCATAACTGC
6873129 AAACCATAAACTCCAAACCTCGAACCTA
1 AAACCATAAACTCCAAACCTCGAACCTA
* * *
6873157 AAACCCTAAAC-CTAAACCTTGAACCT
1 AAACCATAAACTCCAAACCTCGAACCT
6873183 TAAAGTTTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.44, C:0.35, G:0.04, T:0.17
Consensus pattern (28 bp):
AAACCATAAACTCCAAACCTCGAACCTA
Found at i:6879873 original size:19 final size:18
Alignment explanation
Indices: 6879849--6879899 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 18
6879839 GAATCAAAAC
6879849 AACTTTTATGCATTATAAA
1 AACTTTTATGCATTAT-AA
*
6879868 AACTTTTATCTACATTATAA
1 AACTTTTA--TGCATTATAA
6879888 AA-TTTTATGCAT
1 AACTTTTATGCAT
6879900 CAGTTTCAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
17 4 0.14
19 13 0.46
20 4 0.14
21 7 0.25
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (18 bp):
AACTTTTATGCATTATAA
Found at i:6898257 original size:43 final size:43
Alignment explanation
Indices: 6898159--6898259 Score: 132
Period size: 44 Copynumber: 2.3 Consensus size: 43
6898149 GAAGATAGCA
*
6898159 AATCCTATCTCCCTGGGCAACAGTGGAATAGGTTAAAGATTGT
1 AATCCTATCTCCCTGGACAACAGTGGAATAGGTTAAAGATTGT
** *
6898202 AAGTCCTATCTCCCTGGACTGCAGTGGAATA-GTTGAAGATTGT
1 AA-TCCTATCTCCCTGGACAACAGTGGAATAGGTTAAAGATTGT
*
6898245 AGATCCTGTCTCCCT
1 A-ATCCTATCTCCCT
6898260 AAGCAGTAGT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
43 25 0.49
44 26 0.51
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.30
Consensus pattern (43 bp):
AATCCTATCTCCCTGGACAACAGTGGAATAGGTTAAAGATTGT
Found at i:6919532 original size:27 final size:27
Alignment explanation
Indices: 6919485--6919564 Score: 115
Period size: 27 Copynumber: 3.0 Consensus size: 27
6919475 AGATCCTTCA
* * *
6919485 ATAATTCGCCACAAAGGCTTTTCTTTC
1 ATAATTCACCGCAAAGACTTTTCTTTC
*
6919512 ATAATTCACCGCGAAGACTTTTCTTTC
1 ATAATTCACCGCAAAGACTTTTCTTTC
*
6919539 ATAATTCACCGCAAAGGCTTTTCTTT
1 ATAATTCACCGCAAAGACTTTTCTTT
6919565 TATGGCGTGT
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (27 bp):
ATAATTCACCGCAAAGACTTTTCTTTC
Found at i:6921949 original size:23 final size:22
Alignment explanation
Indices: 6921916--6921967 Score: 77
Period size: 23 Copynumber: 2.3 Consensus size: 22
6921906 AAAAATAGCA
*
6921916 CAAAAAAGTAGCAAAACAACAC
1 CAAAACAGTAGCAAAACAACAC
*
6921938 CAACAACAGTAGCAAAACAACAT
1 CAA-AACAGTAGCAAAACAACAC
6921961 CAAAACA
1 CAAAACA
6921968 ACACCAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 7 0.26
23 20 0.74
ACGTcount: A:0.62, C:0.25, G:0.08, T:0.06
Consensus pattern (22 bp):
CAAAACAGTAGCAAAACAACAC
Found at i:6921964 original size:11 final size:11
Alignment explanation
Indices: 6921927--6921976 Score: 55
Period size: 11 Copynumber: 4.5 Consensus size: 11
6921917 AAAAAAGTAG
6921927 CAAAACAACAC
1 CAAAACAACAC
** *
6921938 CAACAACAGTAG
1 CAA-AACAACAC
*
6921950 CAAAACAACAT
1 CAAAACAACAC
6921961 CAAAACAACAC
1 CAAAACAACAC
6921972 CAAAA
1 CAAAA
6921977 ATCTACAAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
11 23 0.74
12 8 0.26
ACGTcount: A:0.62, C:0.30, G:0.04, T:0.04
Consensus pattern (11 bp):
CAAAACAACAC
Found at i:6930030 original size:16 final size:16
Alignment explanation
Indices: 6929991--6930044 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
6929981 ATGTAATTAG
6929991 TAATAAATTTTTATTT
1 TAATAAATTTTTATTT
*
6930007 TAAAAAATTATTTA-TT
1 TAATAAATT-TTTATTT
* *
6930023 TCATAAATTTTATTTTT
1 TAATAAATTTT-TATTT
6930040 TAATA
1 TAATA
6930045 TAAAATTTTA
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
15 2 0.07
16 18 0.60
17 10 0.33
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (16 bp):
TAATAAATTTTTATTT
Found at i:6930066 original size:20 final size:19
Alignment explanation
Indices: 6930000--6930066 Score: 61
Period size: 17 Copynumber: 3.6 Consensus size: 19
6929990 GTAATAAATT
*
6930000 TTTATTTTA-AAAA-ATTA
1 TTTATTTTATAAAATTTTA
*
6930017 TTTATTTCAT-AAATTTTA
1 TTTATTTTATAAAATTTTA
6930035 TTT-TTTAATATAAAATTTTA
1 TTTATTT--TATAAAATTTTA
6930055 TATTATTTTATA
1 T-TTATTTTATA
6930067 TAGTTTTGAC
Statistics
Matches: 40, Mismatches: 3, Indels: 11
0.74 0.06 0.20
Matches are distributed among these distances:
17 14 0.35
18 6 0.15
19 2 0.05
20 13 0.32
21 2 0.05
22 3 0.08
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (19 bp):
TTTATTTTATAAAATTTTA
Found at i:6931196 original size:7 final size:7
Alignment explanation
Indices: 6931184--6931218 Score: 54
Period size: 7 Copynumber: 5.1 Consensus size: 7
6931174 AATTTAACAC
6931184 TTATATT
1 TTATATT
6931191 TTATATT
1 TTATATT
6931198 TTAT-TT
1 TTATATT
*
6931204 TTATATA
1 TTATATT
6931211 TTATATT
1 TTATATT
6931218 T
1 T
6931219 CAAATGTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 6 0.24
7 19 0.76
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTATATT
Found at i:6931205 original size:13 final size:14
Alignment explanation
Indices: 6931184--6931218 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
6931174 AATTTAACAC
*
6931184 TTATATTTTATATT
1 TTATATTTTATATA
6931198 TTAT-TTTTATATA
1 TTATATTTTATATA
6931211 TTATATTT
1 TTATATTT
6931219 CAAATGTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (14 bp):
TTATATTTTATATA
Found at i:6932327 original size:24 final size:24
Alignment explanation
Indices: 6932286--6932332 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
6932276 TTTTTGAACC
* * *
6932286 GAGTGAAATTGAATAAATTTATTA
1 GAGTGAAATTAAAAAAATATATTA
*
6932310 GAGTTAAATTAAAAAAATATATT
1 GAGTGAAATTAAAAAAATATATT
6932333 GAATAAGTAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.51, C:0.00, G:0.13, T:0.36
Consensus pattern (24 bp):
GAGTGAAATTAAAAAAATATATTA
Found at i:6932583 original size:27 final size:28
Alignment explanation
Indices: 6932551--6932606 Score: 80
Period size: 27 Copynumber: 2.0 Consensus size: 28
6932541 CATTTTAATA
*
6932551 TAATTTTTAAGA-AAT-TTATATATTTTT
1 TAATTTTTAAAATAATATTATA-ATTTTT
6932578 TAATTTTTAAAATAATATTATAATTTTT
1 TAATTTTTAAAATAATATTATAATTTTT
6932606 T
1 T
6932607 TTGAAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
27 11 0.42
28 10 0.38
29 5 0.19
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (28 bp):
TAATTTTTAAAATAATATTATAATTTTT
Found at i:6933508 original size:3 final size:3
Alignment explanation
Indices: 6933502--6933553 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
6933492 TGTTCTTTGC
6933502 ATT ATT ATT ATT ATT ATT ATT A-T ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
6933549 ATT AT
1 ATT AT
6933554 CAGCATGGTT
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
2 2 0.04
3 46 0.96
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:6934575 original size:24 final size:23
Alignment explanation
Indices: 6934535--6934583 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
6934525 ATGTTTTATT
*
6934535 TATATTTATTCTTTATATAA-AAA
1 TATATTTATTCTATATA-AATAAA
*
6934558 TATATTTTCTTCTATATAAATAAA
1 TATA-TTTATTCTATATAAATAAA
6934582 TA
1 TA
6934584 AAGCTTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.51
Consensus pattern (23 bp):
TATATTTATTCTATATAAATAAA
Found at i:6939626 original size:23 final size:23
Alignment explanation
Indices: 6939600--6939654 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 23
6939590 ATAATAAATA
* *
6939600 TATATATATTTTTTATTTTTAAT
1 TATATATATATTTTAATTTTAAT
*
6939623 TATATTTATATTTTAATTTTAAT
1 TATATATATATTTTAATTTTAAT
*
6939646 TTTA-ATATA
1 TATATATATA
6939655 ATCAATTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 4 0.15
23 23 0.85
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (23 bp):
TATATATATATTTTAATTTTAAT
Found at i:6953736 original size:20 final size:21
Alignment explanation
Indices: 6953700--6953742 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
6953690 AAAGCATAAA
*
6953700 AAAATTAGAAATTAATAATTT
1 AAAATTAGAAATAAATAATTT
*
6953721 AAAATTA-AAATAAATATTTT
1 AAAATTAGAAATAAATAATTT
6953741 AA
1 AA
6953743 TTTTCAAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (21 bp):
AAAATTAGAAATAAATAATTT
Found at i:6954533 original size:17 final size:17
Alignment explanation
Indices: 6954511--6954543 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6954501 TGAAAATTTT
*
6954511 AAAAATTTTTAAAATTC
1 AAAAATATTTAAAATTC
6954528 AAAAATATTTAAAATT
1 AAAAATATTTAAAATT
6954544 ATTTTTAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (17 bp):
AAAAATATTTAAAATTC
Found at i:6954560 original size:29 final size:29
Alignment explanation
Indices: 6954503--6954620 Score: 104
Period size: 29 Copynumber: 4.1 Consensus size: 29
6954493 TTAACTTTTG
6954503 AAAAT-TTTAAAA--ATTTTT-AAAATTCA
1 AAAATATTTAAAATTATTTTTAAAAATT-A
6954529 AAAATATTTAAAATTATTTTTAAAAATTA
1 AAAATATTTAAAATTATTTTTAAAAATTA
** *
6954558 AAAGCA-TTAAAATTATTTTTTAAAAAGTA
1 AAAATATTTAAAATTA-TTTTTAAAAATTA
* **
6954587 AAAA-ATTATAAAAAATATTTTTAAATTTTA
1 AAAATATT-T-AAAATTATTTTTAAAAATTA
6954617 AAAA
1 AAAA
6954621 ATTAATTAAA
Statistics
Matches: 76, Mismatches: 8, Indels: 12
0.79 0.08 0.12
Matches are distributed among these distances:
26 5 0.07
27 7 0.09
28 10 0.13
29 27 0.36
30 21 0.28
31 6 0.08
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.41
Consensus pattern (29 bp):
AAAATATTTAAAATTATTTTTAAAAATTA
Found at i:6956708 original size:21 final size:21
Alignment explanation
Indices: 6956679--6956721 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
6956669 CGAACACATC
6956679 AACAAAAGCTCATAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
* *
6956700 AACAGAAGCTCGTAAGAGCTG
1 AACAAAAGCTCATAAGAGCTG
6956721 A
1 A
6956722 TCCACCCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.19, G:0.23, T:0.14
Consensus pattern (21 bp):
AACAAAAGCTCATAAGAGCTG
Found at i:6967666 original size:27 final size:27
Alignment explanation
Indices: 6967626--6967728 Score: 111
Period size: 27 Copynumber: 3.8 Consensus size: 27
6967616 AGGAAGCGTC
*
6967626 CTGGTGGCTATGCCACAATTATCTAAT
1 CTGGTGGCTCTGCCACAATTATCTAAT
**
6967653 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTAAT
* *
6967680 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCT-AAT
* *
6967708 CTGGTGACTCTGTCAC-ATTAT
1 CTGGTGGCTCTGCCACAATTAT
6967729 TTGTTTTGGC
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.05
27 44 0.68
28 18 0.28
ACGTcount: A:0.17, C:0.24, G:0.21, T:0.37
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTAAT
Found at i:6979978 original size:27 final size:26
Alignment explanation
Indices: 6979938--6980022 Score: 89
Period size: 27 Copynumber: 3.2 Consensus size: 26
6979928 AGGAAGCGTC
*
6979938 CTGGTGGCTATGCCATAATTATCTGAT
1 CTGGTGGCTCTGCCA-AATTATCTGAT
*
6979965 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCA-AATTATCTG-AT
* * * *
6979993 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCAAATTATCTGAT
6980019 CTGG
1 CTGG
6980023 CGGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.10
27 30 0.60
28 15 0.30
ACGTcount: A:0.16, C:0.22, G:0.24, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCAAATTATCTGAT
Found at i:6980003 original size:28 final size:27
Alignment explanation
Indices: 6979955--6980022 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
6979945 CTATGCCATA
*
6979955 ATTATCTG-ATCTGGTGGCTCTGCCAC
1 ATTATCTGTATCTGGTGACTCTGCCAC
*
6979981 GATTATCTGTATCTGGTGACTCTGTCAC
1 -ATTATCTGTATCTGGTGACTCTGCCAC
6980009 ATTATCTGT-TCTGG
1 ATTATCTGTATCTGG
6980023 CGGCCATGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
26 5 0.13
27 17 0.45
28 16 0.42
ACGTcount: A:0.16, C:0.22, G:0.22, T:0.40
Consensus pattern (27 bp):
ATTATCTGTATCTGGTGACTCTGCCAC
Found at i:6981222 original size:27 final size:26
Alignment explanation
Indices: 6981174--6981251 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
6981164 GCAAGGTTGC
* *
6981174 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGA-A
6981201 CAGATATTGTGGCAGAGCCACCAGAA
1 CAGATATTGTGGCAGAGCCACCAGAA
* *
6981227 CAGATAATTGTGGCATAACCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
6981252 GACGCTTCCT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.13
27 38 0.84
28 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
CAGATATTGTGGCAGAGCCACCAGAA
Found at i:6982879 original size:26 final size:26
Alignment explanation
Indices: 6982848--6982955 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
6982838 TGAAATGCCC
*
6982848 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
6982874 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
6982900 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
6982926 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
6982952 ATCA
1 ATCA
6982956 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:6989324 original size:27 final size:27
Alignment explanation
Indices: 6989276--6989434 Score: 175
Period size: 27 Copynumber: 5.9 Consensus size: 27
6989266 GCGAGGCTGC
* *
6989276 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
6989303 CAGATATTGTGGCAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
6989329 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
6989356 CAGATAATTGTGGCATAGCCACCAG-GA
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
6989383 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* **
6989410 CAGATAATTGTAGCCTAGCCACCAG
1 CAGAT-ATTGTGGCAGAGCCACCAG
6989435 GACGCTTCCT
Statistics
Matches: 115, Mismatches: 9, Indels: 16
0.82 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 100 0.87
28 5 0.04
ACGTcount: A:0.34, C:0.23, G:0.25, T:0.19
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:6989435 original size:54 final size:54
Alignment explanation
Indices: 6989294--6989437 Score: 236
Period size: 54 Copynumber: 2.7 Consensus size: 54
6989284 GTGACGAAGT
* *
6989294 CACCAGATACAGAT-ATTGTGGCAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
6989348 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
* *
6989402 CACCAGATCAGATAATTGTAGCCTAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCATAGCCACCAGGAC
6989438 GCTTCCTCCA
Statistics
Matches: 85, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
53 5 0.06
54 80 0.94
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCATAGCCACCAGGACAGATATATGTGGCAGAGC
Found at i:6992861 original size:11 final size:11
Alignment explanation
Indices: 6992847--6992872 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
6992837 TCTGACTCTG
6992847 ATCTAAAATTA
1 ATCTAAAATTA
6992858 ATCTAAAATTA
1 ATCTAAAATTA
6992869 ATCT
1 ATCT
6992873 GTCTTAGATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (11 bp):
ATCTAAAATTA
Found at i:7005631 original size:21 final size:21
Alignment explanation
Indices: 7005605--7005649 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7005595 ACAACCTCTA
* *
7005605 ACACGGAAGTGTCCCAAGGTC
1 ACACGGAAGTCTCCCAAGATC
**
7005626 ACACGGGCGTCTCCCAAGATC
1 ACACGGAAGTCTCCCAAGATC
7005647 ACA
1 ACA
7005650 TTGGCATGTC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.33, G:0.24, T:0.13
Consensus pattern (21 bp):
ACACGGAAGTCTCCCAAGATC
Found at i:7005661 original size:21 final size:21
Alignment explanation
Indices: 7005614--7005661 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
7005604 AACACGGAAG
* *
7005614 TGTCCCAAGGTCACACGGGCG
1 TGTCCCAAGATCACACGGGCA
* **
7005635 TCTCCCAAGATCACATTGGCA
1 TGTCCCAAGATCACACGGGCA
7005656 TGTCCC
1 TGTCCC
7005662 TTGGACCACA
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.21, C:0.35, G:0.23, T:0.21
Consensus pattern (21 bp):
TGTCCCAAGATCACACGGGCA
Found at i:7005900 original size:67 final size:67
Alignment explanation
Indices: 7005792--7005925 Score: 250
Period size: 67 Copynumber: 2.0 Consensus size: 67
7005782 TATTTAAGGA
* *
7005792 CATTTTGAATAATCTTGGTTAATGAATAGTAACTTGCATGATTTATTTGTAAATGTTCCTGTATG
1 CATTTTGAATAATCTTAGTTAATGAATAGTAACTTGCATGATTTATTTGTAAATGTTCATGTATG
7005857 TT
66 TT
7005859 CATTTTGAATAATCTTAGTTAATGAATAGTAACTTGCATGATTTATTTGTAAATGTTCATGTATG
1 CATTTTGAATAATCTTAGTTAATGAATAGTAACTTGCATGATTTATTTGTAAATGTTCATGTATG
7005924 TT
66 TT
7005926 ACATGCAACC
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
67 65 1.00
ACGTcount: A:0.30, C:0.08, G:0.16, T:0.46
Consensus pattern (67 bp):
CATTTTGAATAATCTTAGTTAATGAATAGTAACTTGCATGATTTATTTGTAAATGTTCATGTATG
TT
Found at i:7008910 original size:41 final size:40
Alignment explanation
Indices: 7008865--7008967 Score: 134
Period size: 41 Copynumber: 2.5 Consensus size: 40
7008855 TTTCTGAATC
*
7008865 AATGAAAAAGTTGAAAAGGATGTTATCAGAAAACGATATCA
1 AATGAAAAAGTTGAAAAGGATATTATCAGAAAACGATAT-A
** * *
7008906 AATGAAAAAGTTGAAAAAAATATTATCTGAAAAGGATATA
1 AATGAAAAAGTTGAAAAGGATATTATCAGAAAACGATATA
* *
7008946 AATGAAAAGGTCGAAAAGGATA
1 AATGAAAAAGTTGAAAAGGATA
7008968 GCAATGAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
40 19 0.36
41 34 0.64
ACGTcount: A:0.54, C:0.05, G:0.19, T:0.21
Consensus pattern (40 bp):
AATGAAAAAGTTGAAAAGGATATTATCAGAAAACGATATA
Found at i:7009921 original size:31 final size:31
Alignment explanation
Indices: 7009884--7010061 Score: 223
Period size: 31 Copynumber: 5.7 Consensus size: 31
7009874 TGTGTACAAT
7009884 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
7009915 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * * *
7009946 ATGAAAAGCGGTAGCTTCGACTACTTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * * *
7009977 GCGAAAAGTAGTAGCTTCGACTACCTGATTA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* * *
7010008 GTGAAAAGTGGTAGCTCCAGCTAACTGATCA
1 GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
* *
7010039 GT-AAATAGTGATAGCTTCAGCTA
1 GTGAAA-AGTGGTAGCTTCGGCTA
7010062 TCGAATGTTA
Statistics
Matches: 127, Mismatches: 19, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
30 3 0.02
31 124 0.98
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (31 bp):
GTGAAAAGTGGTAGCTTCGGCTACCTGATCA
Found at i:7010090 original size:29 final size:29
Alignment explanation
Indices: 7010048--7010105 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
7010038 AGTAAATAGT
*
7010048 GATAGCTTCAGCTATCGAATGTTAAAAGG
1 GATAGCTTCAGCTATCGAATGTGAAAAGG
**
7010077 GATAGCTTTGGCTATCGAATGTGAAAAGG
1 GATAGCTTCAGCTATCGAATGTGAAAAGG
7010106 TTAGGTATAC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.28
Consensus pattern (29 bp):
GATAGCTTCAGCTATCGAATGTGAAAAGG
Found at i:7010258 original size:33 final size:32
Alignment explanation
Indices: 7010098--7010252 Score: 177
Period size: 32 Copynumber: 4.8 Consensus size: 32
7010088 CTATCGAATG
*
7010098 TGAAAAGGTTAGGTATACTTTGTGTATATCACA
1 TGAAAAGGTTAGGTATACTTTGTGTATA-CACT
* * *
7010131 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACACT
* * *
7010163 TGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGTTAGGTATACTTTGTGTATACACT
**
7010195 TGAAAAGGAAAGGTATACTTTGTGTATAC-CAT
1 TGAAAAGGTTAGGTATACTTTGTGTATACAC-T
**
7010227 ATGAAAAGGAAAGGTATACTTTGTGT
1 -TGAAAAGGTTAGGTATACTTTGTGT
7010253 TTACCACTCA
Statistics
Matches: 111, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
31 1 0.01
32 60 0.54
33 50 0.45
ACGTcount: A:0.33, C:0.10, G:0.23, T:0.35
Consensus pattern (32 bp):
TGAAAAGGTTAGGTATACTTTGTGTATACACT
Found at i:7010276 original size:97 final size:97
Alignment explanation
Indices: 7010098--7010306 Score: 215
Period size: 97 Copynumber: 2.1 Consensus size: 97
7010088 CTATCGAATG
** * ** *
7010098 TGAAAAGGTTAGGTATACTTTGTGTATATCACATGAAAAGGTTATGTACACTTTGTGTGTACACT
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACT
* ** * * * * *
7010163 TGAAAAGGTTATGTACACTTTGTGTGTACACT
66 AGAAAAGGAAACGTACACCTCGAGTGTACAAT
* * *
7010195 TGAAAAGGAAAGGTATACTTTGTGTATACCATATGAAAAGGAAAGGTATACTTTGTGTTTACCAC
1 TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTA-CAC
7010260 TCAG-AAA-GAAACGTACACCTCGAGTGTACAAT
65 T-AGAAAAGGAAACGTACACCTCGAGTGTACAAT
*
7010292 TGGAAAAGAAAAGGT
1 T-GAAAAGGAAAGGT
7010307 CCATCAGAAA
Statistics
Matches: 91, Mismatches: 18, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
97 71 0.78
98 19 0.21
99 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (97 bp):
TGAAAAGGAAAGGTATACTTTGTGTATACCACATGAAAAGGAAAGGTACACTTTGTGTGTACACT
AGAAAAGGAAACGTACACCTCGAGTGTACAAT
Found at i:7014987 original size:24 final size:24
Alignment explanation
Indices: 7014939--7014988 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
7014929 AGTTTTGGGT
**
7014939 TTTCTTTATGTTTTGTATTCTTTA
1 TTTCTTTATGTTTTGTATTAGTTA
7014963 TTTCTTTATGTTTTGTATTAGTTA
1 TTTCTTTATGTTTTGTATTAGTTA
7014987 TT
1 TT
7014989 ATTTTGAGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.14, C:0.06, G:0.10, T:0.70
Consensus pattern (24 bp):
TTTCTTTATGTTTTGTATTAGTTA
Found at i:7017933 original size:23 final size:23
Alignment explanation
Indices: 7017888--7017933 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7017878 AAATCCTAAT
* *
7017888 TTTCCTTTCTTTTTCTTTCTTTC
1 TTTCCCTTCTTTGTCTTTCTTTC
7017911 TTTCCCTTCTTTGT-TTTCGTTTC
1 TTTCCCTTCTTTGTCTTTC-TTTC
7017934 AACTTCTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.00, C:0.26, G:0.04, T:0.70
Consensus pattern (23 bp):
TTTCCCTTCTTTGTCTTTCTTTC
Found at i:7018000 original size:16 final size:16
Alignment explanation
Indices: 7017979--7018017 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
7017969 ACTTTATGTT
*
7017979 TATTATATTAATATAA
1 TATTATATTAACATAA
7017995 TATTATATTAACATAA
1 TATTATATTAACATAA
7018011 TAATTAT
1 T-ATTAT
7018018 TATTTCTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 16 0.76
17 5 0.24
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (16 bp):
TATTATATTAACATAA
Found at i:7019779 original size:69 final size:69
Alignment explanation
Indices: 7019668--7019805 Score: 267
Period size: 69 Copynumber: 2.0 Consensus size: 69
7019658 AGCCTCATTA
7019668 TCGGCATACCATGGGTAAAACTACTTTTTCAATTCCTTTTGGAACTCCTCCTAAGTCCCAATCAT
1 TCGGCATACCATGGGTAAAACTACTTTTTCAATTCCTTTTGGAACTCCTCCTAAGTCCCAATCAT
7019733 GATG
66 GATG
*
7019737 TCGGCATACCATGGGTAAAACTACTTTTTCAATTCTTTTTGGAACTCCTCCTAAGTCCCAATCAT
1 TCGGCATACCATGGGTAAAACTACTTTTTCAATTCCTTTTGGAACTCCTCCTAAGTCCCAATCAT
7019802 GATG
66 GATG
7019806 CCACCTCGTT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 68 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.34
Consensus pattern (69 bp):
TCGGCATACCATGGGTAAAACTACTTTTTCAATTCCTTTTGGAACTCCTCCTAAGTCCCAATCAT
GATG
Found at i:7020643 original size:49 final size:49
Alignment explanation
Indices: 7020571--7020668 Score: 187
Period size: 49 Copynumber: 2.0 Consensus size: 49
7020561 GCCTAACTCT
7020571 TAAAAAAGAGAATTCATATAGGAAATTCTTTAAAGCACCAAAATAAAGC
1 TAAAAAAGAGAATTCATATAGGAAATTCTTTAAAGCACCAAAATAAAGC
*
7020620 TAAAAATGAGAATTCATATAGGAAATTCTTTAAAGCACCAAAATAAAGC
1 TAAAAAAGAGAATTCATATAGGAAATTCTTTAAAGCACCAAAATAAAGC
7020669 GAAAGCAAAC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.52, C:0.12, G:0.12, T:0.23
Consensus pattern (49 bp):
TAAAAAAGAGAATTCATATAGGAAATTCTTTAAAGCACCAAAATAAAGC
Found at i:7021243 original size:27 final size:27
Alignment explanation
Indices: 7021213--7021267 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
7021203 TGATCTTATT
7021213 AGCATTATTTCTTTATCTTTGTCTTTC
1 AGCATTATTTCTTTATCTTTGTCTTTC
7021240 AGCATTATTTCTTTATCTTTGTCTTTC
1 AGCATTATTTCTTTATCTTTGTCTTTC
7021267 A
1 A
7021268 CTTTAGTGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.16, C:0.18, G:0.07, T:0.58
Consensus pattern (27 bp):
AGCATTATTTCTTTATCTTTGTCTTTC
Found at i:7022095 original size:27 final size:27
Alignment explanation
Indices: 7022064--7022120 Score: 107
Period size: 26 Copynumber: 2.1 Consensus size: 27
7022054 AAAAATATTT
7022064 CATAAAAGTTGTTTTCAATTAAACAAA
1 CATAAAAGTTGTTTTCAATTAAACAAA
7022091 CAT-AAAGTTGTTTTCAATTAAACAAA
1 CATAAAAGTTGTTTTCAATTAAACAAA
7022117 CATA
1 CATA
7022121 CATTTAAGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 26 0.90
27 3 0.10
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.33
Consensus pattern (27 bp):
CATAAAAGTTGTTTTCAATTAAACAAA
Found at i:7022481 original size:15 final size:15
Alignment explanation
Indices: 7022461--7022512 Score: 50
Period size: 15 Copynumber: 3.2 Consensus size: 15
7022451 ACTATAAAAC
7022461 ATTTATTATTAATAT
1 ATTTATTATTAATAT
*
7022476 ATTTATAATTGTAATAAAT
1 ATTTATTA-T-TAAT--AT
*
7022495 ATTTATTATTAAAAT
1 ATTTATTATTAATAT
7022510 ATT
1 ATT
7022513 AATATTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
15 12 0.40
16 1 0.03
17 7 0.23
18 1 0.03
19 9 0.30
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATTTATTATTAATAT
Found at i:7022622 original size:20 final size:22
Alignment explanation
Indices: 7022600--7022643 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
7022590 TTGAAATATT
7022600 AAATA-ATTTATTAAAATAATA
1 AAATATATTTATTAAAATAATA
* *
7022621 AAATATATTTATTATATTAATA
1 AAATATATTTATTAAAATAATA
7022643 A
1 A
7022644 TTTATTATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAATATATTTATTAAAATAATA
Found at i:7022648 original size:16 final size:17
Alignment explanation
Indices: 7022622--7022653 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7022612 AAAATAATAA
7022622 AATATATTTATTATATT
1 AATATATTTATTATATT
7022639 AATA-ATTTATTATAT
1 AATATATTTATTATAT
7022654 GACTAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AATATATTTATTATATT
Found at i:7023614 original size:13 final size:13
Alignment explanation
Indices: 7023596--7023621 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7023586 TTGTGTGTTC
7023596 TTTATTTTATTTT
1 TTTATTTTATTTT
7023609 TTTATTTTATTTT
1 TTTATTTTATTTT
7023622 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:7025227 original size:28 final size:28
Alignment explanation
Indices: 7025194--7025249 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
7025184 TCCAAAGTGC
7025194 CTTCGAGAGGTGGAGCTAATTATATGCT
1 CTTCGAGAGGTGGAGCTAATTATATGCT
7025222 CTTCGAGAGGTGGAGCTAATTATATGCT
1 CTTCGAGAGGTGGAGCTAATTATATGCT
7025250 AACCTTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (28 bp):
CTTCGAGAGGTGGAGCTAATTATATGCT
Found at i:7026075 original size:17 final size:16
Alignment explanation
Indices: 7026055--7026086 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7026045 TTCATAAGTA
7026055 TATATCAATCATTTCAT
1 TATATCAAT-ATTTCAT
7026072 TATATCAATATTTCA
1 TATATCAATATTTCA
7026087 GGCTTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.38, C:0.16, G:0.00, T:0.47
Consensus pattern (16 bp):
TATATCAATATTTCAT
Found at i:7026418 original size:46 final size:46
Alignment explanation
Indices: 7026353--7026534 Score: 285
Period size: 46 Copynumber: 4.0 Consensus size: 46
7026343 TTATCTTCGA
* * * * * *
7026353 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
7026399 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
7026445 CAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
7026491 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
7026535 TTCAGAAAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
45 4 0.03
46 123 0.97
ACGTcount: A:0.23, C:0.24, G:0.14, T:0.40
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:7031619 original size:13 final size:13
Alignment explanation
Indices: 7031601--7031626 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7031591 TTGTGTGTTC
7031601 TTTATTTTATTTT
1 TTTATTTTATTTT
7031614 TTTATTTTATTTT
1 TTTATTTTATTTT
7031627 ATTTTTCACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTATTTTATTTT
Found at i:7032232 original size:35 final size:32
Alignment explanation
Indices: 7032180--7032243 Score: 83
Period size: 34 Copynumber: 1.9 Consensus size: 32
7032170 TAATACATCA
* *
7032180 AATATATTAAAAATATTAAAATAAATGTTTCTC
1 AATAAATTAAAAATATTAAAA-AAAAGTTTCTC
7032213 AATAAATTGAAAACATATTAAAAAAAAGTTT
1 AATAAATT-AAAA-ATATTAAAAAAAAGTTT
7032244 ATATTTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
33 7 0.26
34 11 0.41
35 9 0.33
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.34
Consensus pattern (32 bp):
AATAAATTAAAAATATTAAAAAAAAGTTTCTC
Found at i:7032358 original size:11 final size:11
Alignment explanation
Indices: 7032342--7032390 Score: 53
Period size: 11 Copynumber: 4.5 Consensus size: 11
7032332 ACATCCAAAC
*
7032342 AATAATAACAA
1 AATAATAATAA
*
7032353 AATAATAGTAA
1 AATAATAATAA
*
7032364 TATAATAATAA
1 AATAATAATAA
* *
7032375 AATAGTAGTAA
1 AATAATAATAA
7032386 AATAA
1 AATAA
7032391 ACAACGAATC
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (11 bp):
AATAATAATAA
Found at i:7032371 original size:22 final size:22
Alignment explanation
Indices: 7032342--7032390 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
7032332 ACATCCAAAC
7032342 AATAATAACAAAATAATAGTAA
1 AATAATAACAAAATAATAGTAA
* * *
7032364 TATAATAATAAAATAGTAGTAA
1 AATAATAACAAAATAATAGTAA
7032386 AATAA
1 AATAA
7032391 ACAACGAATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.65, C:0.02, G:0.06, T:0.27
Consensus pattern (22 bp):
AATAATAACAAAATAATAGTAA
Found at i:7033114 original size:2 final size:2
Alignment explanation
Indices: 7033107--7033135 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7033097 GTTTTCCAGG
7033107 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7033136 ATATATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:7043404 original size:22 final size:22
Alignment explanation
Indices: 7043376--7043420 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
7043366 CAGCTGCAGG
7043376 ATTGTCTGAAGGAGTGGTTTTC
1 ATTGTCTGAAGGAGTGGTTTTC
7043398 ATTGTCTGAAGGAGTGGTTTTC
1 ATTGTCTGAAGGAGTGGTTTTC
7043420 A
1 A
7043421 CTTTTTTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.20, C:0.09, G:0.31, T:0.40
Consensus pattern (22 bp):
ATTGTCTGAAGGAGTGGTTTTC
Found at i:7051499 original size:21 final size:21
Alignment explanation
Indices: 7051449--7051522 Score: 89
Period size: 21 Copynumber: 3.5 Consensus size: 21
7051439 CTTGATGCAA
*
7051449 CCACTGCTCCAGTTGAATCTT
1 CCACTGCTCCAATTGAATCTT
7051470 CCA-TGGCTCCAATTGAATCTT
1 CCACT-GCTCCAATTGAATCTT
* *
7051491 CAACTGCTCTAATTG-ATCCTT
1 CCACTGCTCCAATTGAAT-CTT
7051512 CCACTGCTCCA
1 CCACTGCTCCA
7051523 TCCCTTCCAT
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
20 3 0.07
21 41 0.91
22 1 0.02
ACGTcount: A:0.22, C:0.34, G:0.12, T:0.32
Consensus pattern (21 bp):
CCACTGCTCCAATTGAATCTT
Found at i:7056435 original size:15 final size:15
Alignment explanation
Indices: 7056411--7056465 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 15
7056401 TATTACTAAT
* *
7056411 AAATTTTTAATTTTA
1 AAATTATTAATTTCA
*
7056426 AAATTATTAATATCA
1 AAATTATTAATTTCA
7056441 AATATTA-TAATTTCA
1 AA-ATTATTAATTTCA
*
7056456 ATATTATTAA
1 AAATTATTAA
7056466 ACATACATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
14 4 0.12
15 25 0.76
16 4 0.12
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (15 bp):
AAATTATTAATTTCA
Found at i:7056541 original size:27 final size:31
Alignment explanation
Indices: 7056483--7056542 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 31
7056473 TATTTAATTA
7056483 TTTATATTTAATAATATAATAATTTATTAAAAT
1 TTTATATTTAATAATATAAT-ATTTA-TAAAAT
7056516 TTTAT-TTTAATAATA-AAT-TTTA-AAAAT
1 TTTATATTTAATAATATAATATTTATAAAAT
7056543 AATAATTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
27 5 0.19
29 4 0.15
31 3 0.11
32 10 0.37
33 5 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (31 bp):
TTTATATTTAATAATATAATATTTATAAAAT
Found at i:7056551 original size:15 final size:16
Alignment explanation
Indices: 7056524--7056554 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7056514 ATTTTATTTT
7056524 AATAATAAATTTTAAA
1 AATAATAAATTTTAAA
7056540 AATAAT-AATTTTAAA
1 AATAATAAATTTTAAA
7056555 TTTTAAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
AATAATAAATTTTAAA
Found at i:7056564 original size:20 final size:20
Alignment explanation
Indices: 7056529--7056570 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 20
7056519 ATTTTAATAA
7056529 TAAATTTTAAAAATAATAATTT
1 TAAATTTT-AAAATAAT-ATTT
7056551 TAAATTTT-AAATAATATTT
1 TAAATTTTAAAATAATATTT
7056570 T
1 T
7056571 TCATATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 7 0.35
22 8 0.40
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAAATTTTAAAATAATATTT
Found at i:7056571 original size:20 final size:21
Alignment explanation
Indices: 7056529--7056571 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
7056519 ATTTTAATAA
7056529 TAAATTTTAAAAATAATAATTT
1 TAAATTTT-AAAATAATAATTT
*
7056551 TAAATTTT-AAATAATATTTT
1 TAAATTTTAAAATAATAATTT
7056571 T
1 T
7056572 CATATATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
22 8 0.40
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
TAAATTTTAAAATAATAATTT
Found at i:7062456 original size:20 final size:20
Alignment explanation
Indices: 7062431--7062471 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
7062421 TCTAGTAACA
7062431 TGTACTAAATTGCATGAATT
1 TGTACTAAATTGCATGAATT
7062451 TGTACTAAATTGCATGAATT
1 TGTACTAAATTGCATGAATT
7062471 T
1 T
7062472 TCAATTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.10, G:0.15, T:0.41
Consensus pattern (20 bp):
TGTACTAAATTGCATGAATT
Found at i:7062967 original size:24 final size:24
Alignment explanation
Indices: 7062935--7063003 Score: 70
Period size: 24 Copynumber: 2.9 Consensus size: 24
7062925 TACCGATATA
*
7062935 TCAGATCGTAAGAGCTTACTGTTT
1 TCAGCTCGTAAGAGCTTACTGTTT
* * *
7062959 TCAGCTCGTCAGAGCTTGCCGTTT
1 TCAGCTCGTAAGAGCTTACTGTTT
*
7062983 T-AGCTC-AATAGAGCTTACTGT
1 TCAGCTCGTA-AGAGCTTACTGT
7063004 CCATCAGCTC
Statistics
Matches: 36, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
23 15 0.42
24 21 0.58
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (24 bp):
TCAGCTCGTAAGAGCTTACTGTTT
Found at i:7063867 original size:30 final size:30
Alignment explanation
Indices: 7063831--7063890 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
7063821 AGGCATATGA
7063831 ATGGAAAATGCATAATATTAATTAGGTATT
1 ATGGAAAATGCATAATATTAATTAGGTATT
*
7063861 ATGGAAAATGCATGATATTAATTAGGTATT
1 ATGGAAAATGCATAATATTAATTAGGTATT
7063891 TGAATACTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.37
Consensus pattern (30 bp):
ATGGAAAATGCATAATATTAATTAGGTATT
Found at i:7071590 original size:12 final size:13
Alignment explanation
Indices: 7071558--7071590 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7071548 GGCATCTCTA
7071558 TTTCTTC-TCTTC
1 TTTCTTCTTCTTC
7071570 TTTCTTCTTCTTC
1 TTTCTTCTTCTTC
7071583 -TTCTTCTT
1 TTTCTTCTT
7071591 ATATTTCTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTCTTCTTCTTC
Found at i:7081705 original size:18 final size:18
Alignment explanation
Indices: 7081683--7081726 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
7081673 TATGAAATAA
7081683 ATAAAAACT-TTTTAAAAT
1 ATAAAAA-TATTTTAAAAT
*
7081701 TTAAAAATAATTTTAAAAT
1 ATAAAAAT-ATTTTAAAAT
7081720 ATAAAAA
1 ATAAAAA
7081727 GATATAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 1 0.05
18 6 0.27
19 15 0.68
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAAAAATATTTTAAAAT
Found at i:7083860 original size:16 final size:17
Alignment explanation
Indices: 7083835--7083870 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
7083825 TTCTGACGCC
*
7083835 AAACAGTGAAAA-AAAA
1 AAACACTGAAAACAAAA
7083851 AAACACTGAAAACAAAA
1 AAACACTGAAAACAAAA
7083868 AAA
1 AAA
7083871 AAAAGCTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.75, C:0.11, G:0.08, T:0.06
Consensus pattern (17 bp):
AAACACTGAAAACAAAA
Found at i:7083869 original size:20 final size:21
Alignment explanation
Indices: 7083842--7083894 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
7083832 GCCAAACAGT
*
7083842 GAAAAAAAAAAACACTGAAAAC
1 GAAAAAAAAAAA-GCTGAAAAC
7083864 -AAAAAAAAAAAGCTGAAAAC
1 GAAAAAAAAAAAGCTGAAAAC
*
7083884 GAAATAAAAAA
1 GAAAAAAAAAA
7083895 TAAAAAACGG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
20 8 0.29
21 20 0.71
ACGTcount: A:0.75, C:0.09, G:0.09, T:0.06
Consensus pattern (21 bp):
GAAAAAAAAAAAGCTGAAAAC
Found at i:7086783 original size:18 final size:18
Alignment explanation
Indices: 7086760--7086798 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
7086750 CCTAGAGATG
7086760 AAAGCAATTTACAGGTCC
1 AAAGCAATTTACAGGTCC
7086778 AAAGCAATTTACAGGTCC
1 AAAGCAATTTACAGGTCC
7086796 AAA
1 AAA
7086799 TCCAAATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (18 bp):
AAAGCAATTTACAGGTCC
Found at i:7096995 original size:31 final size:30
Alignment explanation
Indices: 7096959--7097030 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 30
7096949 GATTAAATCA
*
7096959 AAATTAAAGTTTCAAGTATACATTTGAACC
1 AAATTAAAGTTTCAAGTATACAATTGAACC
* * * *
7096989 ACAATTAGAA-TTTCATGTGTATAATTGCACC
1 A-AATTA-AAGTTTCAAGTATACAATTGAACC
7097020 AAATTAAAGTT
1 AAATTAAAGTT
7097031 AGTATATATA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
29 2 0.06
30 8 0.24
31 22 0.65
32 2 0.06
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.35
Consensus pattern (30 bp):
AAATTAAAGTTTCAAGTATACAATTGAACC
Found at i:7102629 original size:18 final size:19
Alignment explanation
Indices: 7102576--7102678 Score: 65
Period size: 17 Copynumber: 5.7 Consensus size: 19
7102566 ATTGTTGAAC
*
7102576 ATAAATACAATTTTAATAT
1 ATAAATATAATTTTAATAT
* **
7102595 GTATTTTATAA-TTTAATAT
1 ATA-AATATAATTTTAATAT
7102614 A-AAATATAATTTTAAT-T
1 ATAAATATAATTTTAATAT
* * * *
7102631 ATTAACAT-ATTTTATTTT
1 ATAAATATAATTTTAATAT
*
7102649 A-AAATAT-ATTTTTATAT
1 ATAAATATAATTTTAATAT
*
7102666 ATACATATAATTT
1 ATAAATATAATTT
7102679 AATTAAATTT
Statistics
Matches: 62, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
17 26 0.42
18 18 0.29
19 14 0.23
20 4 0.06
ACGTcount: A:0.45, C:0.03, G:0.01, T:0.51
Consensus pattern (19 bp):
ATAAATATAATTTTAATAT
Found at i:7106487 original size:21 final size:22
Alignment explanation
Indices: 7106448--7106488 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
7106438 CCTACCATGG
7106448 CTTGTATTTTAGTTGAATGATT
1 CTTGTATTTTAGTTGAATGATT
* *
7106470 CTTGTTTTTTA-TTTAATGA
1 CTTGTATTTTAGTTGAATGA
7106489 AGGAACCGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.22, C:0.05, G:0.15, T:0.59
Consensus pattern (22 bp):
CTTGTATTTTAGTTGAATGATT
Found at i:7108397 original size:11 final size:11
Alignment explanation
Indices: 7108362--7108408 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
7108352 AATAACAATA
7108362 AAAAT-ATAGC
1 AAAATGATAGC
* *
7108372 AAAATGACAGT
1 AAAATGATAGC
*
7108383 AAAATAATAGC
1 AAAATGATAGC
*
7108394 AAAATGTTAGC
1 AAAATGATAGC
7108405 AAAA
1 AAAA
7108409 CAACAACGAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
10 5 0.17
11 24 0.83
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.19
Consensus pattern (11 bp):
AAAATGATAGC
Found at i:7108408 original size:22 final size:21
Alignment explanation
Indices: 7108362--7108408 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
7108352 AATAACAATA
*
7108362 AAAATATAGCAAAATGACAGT
1 AAAATATAGCAAAATGACAGC
**
7108383 AAAATAATAGCAAAATGTTAGC
1 AAAAT-ATAGCAAAATGACAGC
7108405 AAAA
1 AAAA
7108409 CAACAACGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.19
Consensus pattern (21 bp):
AAAATATAGCAAAATGACAGC
Found at i:7115577 original size:40 final size:40
Alignment explanation
Indices: 7115494--7115756 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
7115484 TTGAATGCTG
* * * * * *
7115494 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
7115534 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
7115574 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
7115614 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
7115654 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
7115694 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
7115733 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
7115757 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:7115776 original size:79 final size:80
Alignment explanation
Indices: 7115533--7115791 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
7115523 AAGTGAATAT
* * * * * *
7115533 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
7115597 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
7115613 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
7115678 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
7115693 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
7115757 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
7115772 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
7115792 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:7123527 original size:40 final size:40
Alignment explanation
Indices: 7123483--7123706 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
7123473 AAGTGAATAT
* * * * **
7123483 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
7123523 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
7123563 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
7123603 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
7123643 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
7123682 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
7123707 TGAACGAGGA
Statistics
Matches: 171, Mismatches: 12, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 35 0.20
40 136 0.80
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:7123581 original size:80 final size:80
Alignment explanation
Indices: 7123444--7123706 Score: 318
Period size: 80 Copynumber: 3.3 Consensus size: 80
7123434 TTGAATGCTG
* * * * *
7123444 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCC
*
7123506 TTTGTGCGAGATACTAAA
63 TTTGTGCGAGTTACTAAA
* * *
7123524 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
**
7123589 GTGCGAGTTGTTAAA
66 GTGCGAGTTACTAAA
* * *
7123604 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
7123668 GTGTGAGTTACTAAA
66 GTGCGAGTTACTAAA
* *
7123683 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
7123707 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 35 0.22
80 116 0.73
81 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAAA
Found at i:7123658 original size:120 final size:120
Alignment explanation
Indices: 7123444--7123706 Score: 318
Period size: 120 Copynumber: 2.2 Consensus size: 120
7123434 TTGAATGCTG
* * *
7123444 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGATTAAGATCCGAAGGCCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
* **
7123508 TGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
66 CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
* * * *
7123564 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAG-TGAATAAATCCGGATTAAGAT-CCGAAGGCA
* ** * *
7123626 TTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
7123683 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
7123707 TGAACGAGGA
Statistics
Matches: 122, Mismatches: 18, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
119 34 0.28
120 80 0.66
121 8 0.07
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGATTAAGATCCGAAGGCATT
CGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:7127124 original size:20 final size:21
Alignment explanation
Indices: 7127083--7127126 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
7127073 TTGTGTACAA
*
7127083 TAAAAATGAATAAAATTGTGT
1 TAAAAATGAATAAAATTATGT
7127104 TAAAAATGAATAAAA-TATGT
1 TAAAAATGAATAAAATTATGT
7127124 TAA
1 TAA
7127127 CGAGGTGTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 7 0.32
21 15 0.68
ACGTcount: A:0.57, C:0.00, G:0.11, T:0.32
Consensus pattern (21 bp):
TAAAAATGAATAAAATTATGT
Found at i:7127958 original size:26 final size:26
Alignment explanation
Indices: 7127929--7127981 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
7127919 GGAAAAAAAT
* *
7127929 TAAAAAAATACAATTAAAAGTTTTGA
1 TAAAAAAACACAATTAAAAATTTTGA
*
7127955 TAAAAAAACATAATTAAAAATTTTGA
1 TAAAAAAACACAATTAAAAATTTTGA
7127981 T
1 T
7127982 TGAAATTCTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.58, C:0.04, G:0.06, T:0.32
Consensus pattern (26 bp):
TAAAAAAACACAATTAAAAATTTTGA
Found at i:7128721 original size:10 final size:10
Alignment explanation
Indices: 7128702--7128751 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
7128692 TTAAATTCTA
7128702 AAAGATAAAT
1 AAAGATAAAT
7128712 ACAA-ATAAAT
1 A-AAGATAAAT
*
7128722 AAAGATAATT
1 AAAGATAAAT
7128732 AAAGATAAAT
1 AAAGATAAAT
7128742 GAAA-ATAAAT
1 -AAAGATAAAT
7128752 CCTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Done.